ID:

dan_1119

 Coordinate:

scaffold_13045:394567-394717 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.2 -18.1 -18.0

Flybase annnotation

CDS [Dana\GF21679-cds]; exon [dana_GLEANR_5503:3]; intron [Dana\GF21679-in]

No Repeatable elements found

mature
star
  1. scaffold_12902:12428-12454 -
  2. scaffold_12902:42552-42578 -
  3. scaffold_12911:394956-394982 -
  4. scaffold_12911:398143-398169 -
  5. scaffold_12911:472408-472434 -
  6. scaffold_12911:715812-715838 +
  7. scaffold_12947:328362-328388 -
  8. scaffold_13034:1230106-1230132 -
  9. dan_1119  scaffold_13045:394674-394700 -
  10. scaffold_13250:3348856-3348882 -
  11. scaffold_13339:1227746-1227772 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGGCGCCAGGCACCAAGATCACACGGCCTGCTGGGCGCAAGCATTGGGAGTGCGTGTGTATTGGCACCAACCCGGAACGGTGATCGGGGATCGATGGGAGGACGAGCGGTCGGTCGGCTGAGACGAGCCCTTTTGTAACTTTATCAAAATAAAGGGGATATTTATAAAACGGAGGACCCTGTGTCATTTCTGGGCTCAGGCAATGGTTAATGGGTCCTTTACAGATTATGCCCCATTTCGCACTGAATGT
*******************************************************************..((...((..((....((((.(((((((.............)))))))..))))..))..)).))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
.......CAGGCACCAAGATCACACGGCCT............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
.........GGCACCAAGATCACACGGCCTG............................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0
..........................................................................................................GCGGTCGGTCGGCTGAGACGAGCCCTT...................................................................................................................... 27 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................GGCTCAGGCAATGGTTAATGGG.................................... 22 0 1 1.00 1 1 0 0
.........GGCACCAAGATCACACGGCCTGCTG......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
.....................................................................................................GACGAGCGGTCGGTCGGCTGAGA............................................................................................................................... 23 0 2 1.00 2 2 0 0
.....................................................................................................GACGAGCGGTCGGTCGGCTGAGAC.............................................................................................................................. 24 0 2 0.50 1 0 1 0
......................................................................................................ACGAGCGGTCGGTCGGCTGAGA............................................................................................................................... 22 0 2 0.50 1 1 0 0
...................................................TTCGTGTGTATTGGCACCAACC.................................................................................................................................................................................. 22 1 2 0.50 1 0 1 0
..................................................GTGCGTGTGTATTGGCACCATG................................................................................................................................................................................... 22 2 3 0.33 1 0 1 0
......................................................................................................ACGAGCGGTCGGTCGGCTGAGAA.............................................................................................................................. 23 1 5 0.20 1 0 1 0
..........................................CATTGTGGGTGCGTGTGTAAT............................................................................................................................................................................................ 21 3 10 0.10 1 1 0 0
...................................................................CCAACCCGGAACGGTGATCGGGGATCG............................................................................................................................................................. 27 0 11 0.09 1 1 0 0
......................................................................................GGGGATCGATGGGAGGACGA................................................................................................................................................. 20 0 12 0.08 1 1 0 0
.....................................................................................CGGGGATCGATGGGAGGACGAG................................................................................................................................................ 22 0 12 0.08 1 1 0 0
..........................................CGTGGGGAATGCGTGTGTA.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1
.............................................................TTGGCACCAACCCGGAACGGTGATCGG................................................................................................................................................................... 27 0 20 0.05 1 1 0 0
.........................................................TGTATTGGCACCAACCCGGAACGG.......................................................................................................................................................................... 24 0 20 0.05 1 1 0 0
............................................................................................GGATGGGTGGCCGAGCGGTCGG......................................................................................................................................... 22 3 20 0.05 1 1 0 0
............................................................................................GGATGGGTGGCCGAGCGGTCG.......................................................................................................................................... 21 3 20 0.05 1 1 0 0
.............................................................TTGGCACCAACCCGGAACGGTGATC..................................................................................................................................................................... 25 0 20 0.05 1 1 0 0

Anti-sense strand reads

AGCCGCGGTCCGTGGTTCTAGTGTGCCGGACGACCCGCGTTCGTAACCCTCACGCACACATAACCGTGGTTGGGCCTTGCCACTAGCCCCTAGCTACCCTCCTGCTCGCCAGCCAGCCGACTCTGCTCGGGAAAACATTGAAATAGTTTTATTTCCCCTATAAATATTTTGCCTCCTGGGACACAGTAAAGACCCGAGTCCGTTACCAATTACCCAGGAAATGTCTAATACGGGGTAAAGCGTGACTTACA
**********************************************************************************************************************..((...((..((....((((.(((((((.............)))))))..))))..))..)).))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
..................................................CACGCACACATAACCGTGGTTGGGCCT.............................................................................................................................................................................. 27 0 1 2.00 2 1 1 0
...................................................................................................................................................................................................GAGTCCGTTACCAATTACCCAGGAAAT............................. 27 0 1 1.00 1 1 0 0
.....................................................................................................................CGACTCTGCTCGGGAAAACATTGAAAT........................................................................................................... 27 0 1 1.00 1 1 0 0
..................................CCGCGTTCGTAACCCTCACGCACACAT.............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0
..........................CGGACGGCCCGCGTTCGTAAC............................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0
........................GCCGGACGACCCGCGTTCGTAA............................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0
................................................................................................................CCAGCCGACTCTGCTCGGGAAAACATT................................................................................................................ 27 0 1 1.00 1 1 0 0
......................................................................................................................GACTCTGCTCGGGAAAACATTGAAA............................................................................................................ 25 0 1 1.00 1 1 0 0
......................GTGCCGGACGACCCGCGTTCGTAACCCT......................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0
..................................................................................CTAGCCCCTAGCTACCCTCCTGCTCG............................................................................................................................................... 26 0 9 0.44 4 2 2 0
.......................................................................GGGCCTTGCCACTAGCCCCTAGCTACCCT....................................................................................................................................................... 29 0 3 0.33 1 1 0 0
.............................................................................TGCCACTAGCCCCTAGCTACCCTCCGG................................................................................................................................................... 27 1 3 0.33 1 0 1 0
.....................................................................................................CTGCTCGCCAGCCAGCCGACTCTACCA........................................................................................................................... 27 3 4 0.25 1 0 1 0
................................................................................................CCCTCCTGCTCGCCAGCCAGCCGA................................................................................................................................... 24 0 20 0.25 5 5 0 0
....................................................................................AGCCCCTAGCTACCCTCCTGCTCGCCA............................................................................................................................................ 27 0 9 0.22 2 2 0 0
.......................................................................................CCCTAGCTACCCTCCTGCTCGCCA............................................................................................................................................ 24 0 12 0.17 2 1 1 0
.................................................................................................CCTCCTGCTCGCCAGCCAGCCGACTC................................................................................................................................ 26 0 20 0.15 3 3 0 0
....................................................CGCACACATAACCGTGGTTGGGCCTT............................................................................................................................................................................. 26 0 20 0.15 3 0 3 0
.....................................................................................................CTACTCGCCAGCCAGCCGACTCTGGT............................................................................................................................ 26 2 14 0.14 2 0 2 0
....................................................................................AGCCCCTAGCTACCCTCCTGCTCGCCAG........................................................................................................................................... 28 0 7 0.14 1 1 0 0
....................................................................................AGCCCCTAGCTACCCTCCTGCTCGC.............................................................................................................................................. 25 0 9 0.11 1 1 0 0
.......................................................................................CCCTAGCTACCCTCCTGCTCGCCAG........................................................................................................................................... 25 0 10 0.10 1 0 1 0
......................................................................................CCCCTAGCTACCCTCCTGCTCGCCAG........................................................................................................................................... 26 0 10 0.10 1 1 0 0
........................................................................................CCTAGCTACCCTCCTGCTCGCCAGC.......................................................................................................................................... 25 0 10 0.10 1 1 0 0
......................................................................................CCCCTAGCTACCCTCCTGCTCGCCAGC.......................................................................................................................................... 27 0 10 0.10 1 1 0 0
..................................................................................................................AGACGACTTTGCTCGGGAC...................................................................................................................... 19 3 10 0.10 1 0 0 1
..........................................................................................TAGCTACCCTCCTGCTCGCCAGCCAG....................................................................................................................................... 26 0 11 0.09 1 1 0 0
.......................................................................GGGCCTTGCCACTAGCCCCTAGCT............................................................................................................................................................ 24 0 11 0.09 1 0 1 0
...........................................................................................AGCTACCCTCCTGCTCGCCAGCCAG....................................................................................................................................... 25 0 11 0.09 1 1 0 0
...........................................................................................AGCTACCCTCCTGCTCGCCAGCCAGCCG.................................................................................................................................... 28 0 11 0.09 1 1 0 0
.....................................................................................................CTGCTCGCCAGCCAACCGACTCTG.............................................................................................................................. 24 1 12 0.08 1 0 1 0
.............................................................................................CTACCCTCCTGCTCGCCAGCCAGCCGA................................................................................................................................... 27 0 12 0.08 1 1 0 0
......................................................................................CCCCTAGCTACCCTCCTGCTCGCCA............................................................................................................................................ 25 0 12 0.08 1 1 0 0
..............................................................................................TACCCTCCTGCTCGCCAGCCAGCCGACT................................................................................................................................. 28 0 12 0.08 1 1 0 0
...............................................................................................ACCCTCCTGCTCGCCAGCCAGCCGAC.................................................................................................................................. 26 0 13 0.08 1 1 0 0
.................................................................................................CCTCCTGCTCGCCAGCCAGCCG.................................................................................................................................... 22 0 20 0.05 1 1 0 0
.............................................................AACCGTGGTTGGGCCTTGCCACTAGC.................................................................................................................................................................... 26 0 20 0.05 1 1 0 0
......................................................................TGGGCCTTGCCACTAGCCCCT................................................................................................................................................................ 21 0 20 0.05 1 0 1 0
................................................................CGTGGTTGGGCCTTGCCACTAGCCCC................................................................................................................................................................. 26 0 20 0.05 1 0 1 0
.......................................................ACACATAACCGTGGTTGGGCCT.............................................................................................................................................................................. 22 0 20 0.05 1 0 1 0
...........................................................ATAACCGTGGTTGGGCCTTGCCACT....................................................................................................................................................................... 25 0 20 0.05 1 1 0 0
................................................................CGTGGTTGGGCCTTGCCACT....................................................................................................................................................................... 20 0 20 0.05 1 0 1 0
..........................................................CATAACCGTGGTTGGGCCTTGCCAC........................................................................................................................................................................ 25 0 20 0.05 1 1 0 0
......................................................CACACATAACCGTGGTTGGGCCTT............................................................................................................................................................................. 24 0 20 0.05 1 0 1 0
.........................................................ACATAACCGTGGTTGGGCCTTGCCAC........................................................................................................................................................................ 26 0 20 0.05 1 1 0 0
...........................................................ATAACCGTGGTTGGGCCTTGCCACTA...................................................................................................................................................................... 26 0 20 0.05 1 0 1 0
.......................................................ACACATAACCGTGGTTGGGCCTT............................................................................................................................................................................. 23 0 20 0.05 1 0 1 0
...................................................................................................TCCTGCTCGCCAGCCAGCCGACTC................................................................................................................................ 24 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13045:394517-394767 - dan_1119 TCGGCGCCAG---GCACC-----AAGA---TCACACGGCCTGCTGGGCGCAAGC-ATTGG------GAGTGCGTGTGTATTGGCACCAACCCGG---AACGGTGATC---------------GGGGATCGATGGGAGGACGAGCGGTCGGTCGGCTGAGACGAGCCCTTTTGTAACTTTATCAAAATAAAGGGGATATTTATAAAACGGAGGAC-CCTGTGTCATTTCTGGGCTCAGGCAATGGTTAATGGGTCCTTTACAGATTATGCCCCATTTCGCACTGAATGT
droBip1 scf7180000395258:8783-8925 - AGGAGGCA-CCAAGGGT-------CAC---GAAT---------------------ATTCG------GAGTGGG-GCCCGTTCTCGGGAACCCGGTTAAACCATCATTGTAAACAGAAGGAGCAGCAAATAAAGAGACTGCATAAA------------------------------------------------------------ATAAAAGCTATTTGTATTATTTCTGGGCTCGGGCAAT----------------------------------------------
droKik1 scf7180000301784:275-303 - TCAGTGGCAA----CGCC-----AAGA---GCAAAT--------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT--------------------------------------------------
droFic1 scf7180000453438:44425-44447 - CAGCAGCA-A---GAAC-----AGAAA---CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------
droEle1 scf7180000490335:488-506 + ACAGCGACTG---CCGCC-----AAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:89655-89664 - CTGCGCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG--------------------------------------------------
droTak1 scf7180000415862:24637-24652 + CCGCCACCGT---GCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------
droYak3 X:17213256-17213268 - TCGCCGTCGA---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------
droEre2 scaffold_4690:13107634-13107659 + GCAGCAACAT---CCAC-----GGCAG---CAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------------------------
dp5 Unknown_group_667:14250-14295 + TTGGCACCAC-------C-----AGACCCTGCAC---------ATCACGTGGGCCTCGGG------GCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG--------------------------------------------------
droPer2 scaffold_53:408289-408337 - TCGGGCTA-G---GCGTT-----AAGA---CT------TCCGATGGAAGTAAGCCATTAA------GAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG--------------------------------------------------
droWil2 scf2_1100000003046:2728-2756 - TGGGTGGAGA---ACACCCGAGAGAGA---TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------------------------------------------
droVir3 scaffold_12970:7509504-7509589 + GCAAATATCG---CCACC-----AGAA---CT----------------------------------------------------------ACAGCAAGAACATCTACATTGGCACCAAGAACGCCGAGAAATGGGAGCACATGCG------------------------------------------------------------CACCCGG-----------------------CTG--------------------------------------------------
droMoj3 scaffold_6359:3729365-3729426 + TTGGTGCTAG---AAGC-----AGCAC---ACACACGCATAGCTGG-------CAAGTGTGTATGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------------------------------------------------
droGri2 scaffold_15053:306505-306529 + CCGTTGCC-C---CAGC-----AGAGA---TCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCGGCGCCAG---GCACC-----AAGA---TCACACGGCCTGCTGGGCGCAAGC-ATTGG------GAGTGCGTGTGTATTGGCACCAACCCGG---AACGGTGATC---------------GGGGATCGATGGGAGGACGAGCGGTCGGTCGGCTGAGACGAGCCCTTTTGTAACTTTATCAAAATAAAGGGGATATTTATAAAACGGAGGAC-CCTGTGTCATTTCTGGGCTCAGGCAATGGTTAATGGGTCCTTTACAGATTATGCCCCATTTCGCACTGAATGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......CAG---GCACC-----AAGA---TCACACGGCCT.......................................................................................................................................................................................................................................................2311.001100000
.........G---GCACC-----AAGA---TCACACGGCCTG......................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................GCGGTCGGTCGGCTGAGACGAGCCCTT.......................................................................................................................2711.001100000
......................................................................................................................................................................................................................................GGCTCAGGCAATGGTTAATGGG....................................2211.001100000
.........G---GCACC-----AAGA---TCACACGGCCTGCTG...................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................GACGAGCGGTCGGTCGGCTGAGA................................................................................................................................2321.002200000
.........................................................................................................................................GACGAGCGGTCGGTCGGCTGAGAC...............................................................................................................................2420.501010000
..........................................................................................................................................ACGAGCGGTCGGTCGGCTGAGA................................................................................................................................2220.501100000
....................................................................GTGCGTGTGTATTGGCACCATG......................................................................................................................................................................................................2230.331010000
..........................................................................................................................................ACGAGCGGTCGGTCGGCTGAGAA...............................................................................................................................2350.201010000
.....................................................................................CCAACCCGG---AACGGTGATC---------------GGGGATCG..............................................................................................................................................................27110.091100000
..........................................................................................................................GGGGATCGATGGGAGGACGA..................................................................................................................................................20120.081100000
..........................................................................................................C---------------GGGGATCGATGGGAGGACGAG.................................................................................................................................................22120.081100000
...............................................................................TTGGCACCAACCCGG---AACGGTGATC---------------GG....................................................................................................................................................................27200.051100000
...........................................................................TGTATTGGCACCAACCCGG---AACGG..........................................................................................................................................................................................24200.051100000
...............................................................................TTGGCACCAACCCGG---AACGGTGATC---------------......................................................................................................................................................................25200.051100000
droBip1
AGGAGGCA-CCAAGGGT-------CAC---GAAT---------------------ATTCG------GAGTGGG-GCCCGTTCTCGGGAACCCGGTTAAACCATCATTGTAAACAGAAGGAGCAGCAAATAAAGAGACTGCATAAA------------------------------------------------------------ATAAAAGCTATTTGTATTATTTCTGGGCTCGGGCAAT----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCAGTGGCAA----CGCC-----AAGA---GCAAAT--------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGCAGCA-A---GAAC-----AGAAA---CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAGCGACTG---CCGCC-----AAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTGCGCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCGCCACCGT---GCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
TCGCCGTCGA---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCAGCAACAT---CCAC-----GGCAG---CAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TTGGCACCAC-------C-----AGACCCTGCAC---------ATCACGTGGGCCTCGGG------GCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG--------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....CACCAC-------C-----AGACCCTGCAC---------ATCAC................................................................................................................................................................................................................................................23135.006506410000000
....CACCAC-------C-----AGACCCTGCAC---------ATCACG...............................................................................................................................................................................................................................................24133.925105010000000
................................AC---------ATCACGTGGGCCTCGGG------GCG...........................................................................................................................................................................................................................2212.0020200000000
.............................TGCAC---------ATCACGTGGGCCTCGGG------GCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................2612.0020200000000
....CACCAC-------C-----AGACCCTGCAC---------ATCA.................................................................................................................................................................................................................................................22131.542001810100000
....CACCAC-------C-----AGACCCTGCAC---------ATCACGT..............................................................................................................................................................................................................................................25131.381801800000000
....CACCAC-------C-----AGACCCTGCAC---------ATC..................................................................................................................................................................................................................................................21131.231601510000000
.............................TGCAC---------ATCACGTGGGCCTCGGG------GCG...........................................................................................................................................................................................................................2511.0010100000000
..............................GCAC---------ATCACGTGGGCCTCGGG------GCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------GG...................................................2711.0010100000000
.................................C---------ATCACGTGGGCCTCGGG------GCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------G....................................................2311.0010000000100
....CACCAC-------C-----AGACCCTGCAC---------AT...................................................................................................................................................................................................................................................20130.2330300000000
.....ACCAC-------C-----AGACCCTGCAC---------ATCAC................................................................................................................................................................................................................................................22130.2330300000000
....CACCAC-------C-----AGACCCTGCAC---------A....................................................................................................................................................................................................................................................19130.1520200000000
.....ACCAC-------C-----AGACCCTGCAC---------ATCACGT..............................................................................................................................................................................................................................................24130.1520200000000
....CACCAC-------C-----AGACCCTGCAC---------ATCACGTGG............................................................................................................................................................................................................................................27130.1520200000000
.....ACCAC-------C-----AGACCCTGCAC---------ATCA.................................................................................................................................................................................................................................................21130.1520200000000
.........................ACCCTGCAC---------ATCACGTGGGCCTCG......................................................................................................................................................................................................................................24200.1020200000000
...........................CCTGCAC---------ATCACGTGGGCCT........................................................................................................................................................................................................................................20200.1020100100000
................................AC---------ATCACGTGGGCCTCGGG------GC............................................................................................................................................................................................................................21200.1020200000000
.........................ACCCTGCAC---------ATCACGTGGGCCTCGGG------..............................................................................................................................................................................................................................26200.1020200000000
.............................TGCAC---------ATCACGTGGGCCTCGGG------..............................................................................................................................................................................................................................22200.1020200000000
.TGGCACCAC-------C-----AGACCCTGCAC---------ATCACG...............................................................................................................................................................................................................................................27120.0810100000000
......CCAC-------C-----AGACCCTGCAC---------ATCAC................................................................................................................................................................................................................................................21130.0810100000000
...GCACCAC-------C-----AGACCCTGCAC---------ATCACG...............................................................................................................................................................................................................................................25130.0810100000000
.....ACCAC-------C-----AGACCCTGCAC---------ATCACG...............................................................................................................................................................................................................................................23130.0810100000000
.....ACCAC-------C-----AGACCCTGCAC---------ATCACGTGGGC..........................................................................................................................................................................................................................................28130.0810100000000
.....ACCAC-------C-----AGACCCTGCAC---------A....................................................................................................................................................................................................................................................18130.0810100000000
....CACCAC-------C-----AGACCCTGCAC---------ATCACGTG.............................................................................................................................................................................................................................................26130.0810100000000
.......CAC-------C-----AGACCCTGCAC---------ATCACGTGG............................................................................................................................................................................................................................................24130.0810100000000
.......................AGACCCTGCAC---------ATCACGTGGG...........................................................................................................................................................................................................................................21200.0510100000000
............................CTGCAC---------ATCACGTGGGCCTC.......................................................................................................................................................................................................................................20200.0510100000000
..........................CCCTGCAC---------ATCACGTGGGCCTC.......................................................................................................................................................................................................................................22200.0510100000000
................................AC---------ATCACGTGGGCCTCGGG------G.............................................................................................................................................................................................................................20200.0510100000000
...........................CCTGCAC---------ATCACGTGGGCCTCGG.....................................................................................................................................................................................................................................23200.0510100000000
.................C-----AGACCCTGCAC---------ATCACGTGGG...........................................................................................................................................................................................................................................22200.0510100000000
..........................CCCTGCAC---------ATCACGTGGGCC.........................................................................................................................................................................................................................................20200.0510100000000
...........................CCTGCAC---------ATCACGTGGGCCTC.......................................................................................................................................................................................................................................21200.0510100000000
.........................ACCCTGCAC---------ATCACGTGGGCCT........................................................................................................................................................................................................................................22200.0510100000000
...............................CAC---------ATCACGTGGGCCTCGGG------GC............................................................................................................................................................................................................................22200.0510100000000
...........................................ATCACGTGGGCCTCGGG------GC............................................................................................................................................................................................................................19200.0510100000000
.........................ACCCTGCAC---------ATCACGTGGG...........................................................................................................................................................................................................................................19200.0510100000000
...........................CCTGCAC---------ATCACGTGGGCCC........................................................................................................................................................................................................................................20200.0510100000000
.............................TGCAC---------ATCACGTGGGCCTCGGG------GC............................................................................................................................................................................................................................24200.0510100000000
.........................ACCCTGCAC---------ATCACGTGGGCCTCGG.....................................................................................................................................................................................................................................25200.0510100000000
droPer2
TCGGGCTA-G---GCGTT-----AAGA---CT------TCCGATGGAAGTAAGCCATTAA------GAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG--------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGGGTGGAGA---ACACCCGAGAGAGA---TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCAAATATCG---CCACC-----AGAA---CT----------------------------------------------------------ACAGCAAGAACATCTACATTGGCACCAAGAACGCCGAGAAATGGGAGCACATGCG------------------------------------------------------------CACCCGG-----------------------CTG--------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTGGTGCTAG---AAGC-----AGCAC---ACACACGCATAGCTGG-------CAAGTGTGTATGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........AG---AAGC-----AGCAC---ACACACGC..........................................................................................................................................................................................................................................................1911.001100000
.....GCTAG---AAGC-----AGCAC---ACACACGCATAGCT....................................................................................................................................................................................................................................................2811.001000010
...................................CGCATAGCTGG-------CAAGTGT....................................................................................................................................................................................................................................1811.001000001
droGri2
CCGTTGCC-C---CAGC-----AGAGA---TCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:31 AM