ID:

dan_1103

 Coordinate:

scaffold_13034:1429394-1429544 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.2 -10.0 -9.7

Flybase annnotation

CDS [Dana\GF23411-cds]; exon [dana_GLEANR_8141:4]; intron [Dana\GF23411-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron+
Hoana1DNAhAT-hobo-
mature
  1. scaffold_6864:1236-1254 +
  2. scaffold_10074:4036-4054 +
  3. scaffold_12911:1964457-1964475 +
  4. scaffold_12916:12451811-12451829 -
  5. scaffold_12943:891784-891802 +
  6. scaffold_12948:363461-363479 -
  7. dan_1103  scaffold_13034:1429519-1429537 +
  8. scaffold_13082:2535082-2535100 -
  9. scaffold_13082:3545655-3545673 -
  10. scaffold_13089:479253-479271 -
  11. scaffold_13099:212588-212606 +
  12. scaffold_13248:3993249-3993267 +
  13. scaffold_13248:4189127-4189145 -
  14. scaffold_13250:3303499-3303517 +
  15. scaffold_13337:2696419-2696437 -
  16. scaffold_13337:22716072-22716090 -
  17. scaffold_13337:22826465-22826483 +
  18. scaffold_13339:170543-170561 -
  19. scaffold_13417:763847-763865 -
  20. scaffold_13770:603487-603505 -
star
  1. scaffold_124:507-528 +
  2. scaffold_11845:641-662 +
  3. scaffold_12647:4962-4983 +
  4. scaffold_12984:634396-634417 +
  5. dan_1103  scaffold_13034:1429465-1429486 +
  6. scaffold_13077:97255-97276 +
  7. scaffold_13089:346373-346394 +
  8. scaffold_13099:1438222-1438243 +
  9. scaffold_13137:1145905-1145926 +
  10. scaffold_13230:552487-552508 +
  11. scaffold_13230:2449153-2449174 +
  12. scaffold_13260:1209948-1209969 +
  13. scaffold_13260:1283898-1283919 +
  14. scaffold_13335:2988118-2988139 +
  15. scaffold_13339:2232888-2232909 +
  16. scaffold_13417:2470233-2470254 +
  17. scaffold_13417:2758666-2758687 +
  18. scaffold_13417:3005483-3005504 +
  19. scaffold_13417:3373494-3373515 +
  20. scaffold_13417:5107381-5107402 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGAGTGCACGCTACTCCAACTATTGAACGAGCAATTGAAAGGAATTTTGAGTAAGTATGATTTCTGTACCTTTTTATTGGAAATTAACTATTTTATTATACCCTTGCAGAGGGTATTATAATTTTGGTCAAAAGTATGCAACGTTGTGAAGAAGACATCTCCAACCCTATAAAGTATATATATTCTTGATCAGCCTCCTGAGTCGATATAAGCATGTCTGTCTGTCTGTTTCCACGCAAACTAGTCTCTCA
*************************************************************************************************************************..((((((((.((((((..((((((.((.((.....))))))))........))...)))))).)))))))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 M058
embryo
 V039
embryo
 V105
male body
..TGTGCACACTACTCCAGCTA..................................................................................................................................................................................................................................... 20 3 7 13.86 97 88 0 4 5 0
...GTGCACACTACTCCAGCTA..................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................CGATATAAGCATGTCTGTCTGTCTGTTT.................... 28 0 2 0.50 1 0 1 0 0 0
..TGTGCACACTACTCCATCTA..................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
...............................CAATTGGTGGGAATTTTGAGT....................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 1
...............................................................CTGTAGCTTTGTATTGGA.......................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0
......................................................................................................................................................................................................................................TCCACGCAAACTAGTCTCTCA 21 0 11 0.09 1 0 0 1 0 0
...............................................................................................................................................................................ATATATATTCTTGATCAGC......................................................... 19 0 20 0.05 1 0 0 1 0 0
...................................................................................................................................................................................................TCCTGAGTCGATATAAGCATGTCTGC.............................. 26 1 20 0.05 1 0 0 1 0 0
.........................................................................................................................TTTTGGTCAAAAGTATGCAACG............................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................................TTATAATTTTGGTCAAACGTATGCAACG............................................................................................................ 28 1 20 0.05 1 0 0 0 0 1
....................................................................................TAACTGTTTCATTACACCC.................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
...................................................................................................................TTATAATTTTGGTCAAAAGTAT.................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................................................................................CTCCTGAGTCGATATAAGCATGTCTGTC............................. 28 0 20 0.05 1 0 1 0 0 0
......................................................................................................CTTGCAGAGGGTATTATAATTT............................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1
...............................................................................................................GGTATTATAATTTTGGTCAAAAGTAT.................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

GCTCACGTGCGATGAGGTTGATAACTTGCTCGTTAACTTTCCTTAAAACTCATTCATACTAAAGACATGGAAAAATAACCTTTAATTGATAAAATAATATGGGAACGTCTCCCATAATATTAAAACCAGTTTTCATACGTTGCAACACTTCTTCTGTAGAGGTTGGGATATTTCATATATATAAGAACTAGTCGGAGGACTCAGCTATATTCGTACAGACAGACAGACAAAGGTGCGTTTGATCAGAGAGT
*********************************************************..((((((((.((((((..((((((.((.((.....))))))))........))...)))))).)))))))).************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V106
head
 V055
head
 V039
embryo
................................................................................................................................................................................................CGGAGGACTCAGCTATATTCGTACAG................................. 26 0 8 0.50 4 4 0 0 0 0 0
...................................................................................................................................................................................................................................CAAAGGTGCGTTTGATCAGAGAGT 24 0 7 0.43 3 2 1 0 0 0 0
................................................................................................................................................................................................CGGAGGACTCAGCTATATTCGTAC................................... 24 0 8 0.38 3 3 0 0 0 0 0
................................................................................................................................................................................................CGGAGGACTCAGCTATATTCGTA.................................... 23 0 8 0.25 2 2 0 0 0 0 0
................................................................................................................................................................................................CGGAGGACTCAGCTATATTCGTACA.................................. 25 0 8 0.25 2 2 0 0 0 0 0
................................................................................................................................................................................................CGGAGGACTCAGCTATATT........................................ 19 0 9 0.22 2 2 0 0 0 0 0
...........................................................................................................................................................................TTCATATATATAAGAACTAGTCG......................................................... 23 0 8 0.13 1 0 1 0 0 0 0
......................................................................................................................................................................................ATGAACTAGTCGGAGGAAG.................................................. 19 3 20 0.10 2 0 0 0 0 1 1
............................................................................................................................................................................................................CTATATTCGTACAGACAGACAGAC....................... 24 0 12 0.08 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................AAAGGTGCGTTTGATCAGAGA.. 21 0 12 0.08 1 0 0 1 0 0 0
.AACACGTGTGATGAGGTTG....................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................AGGTGCGTTTGATCAGAGA.. 19 0 13 0.08 1 0 1 0 0 0 0
................................................................................................................................................................................................CGGAGGGCTCAGCTATATTCGTAC................................... 24 1 16 0.06 1 1 0 0 0 0 0
.....................................................TCATACTAAGGACATGTTA................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0
.................CGGATAACATGCTCGTTAA....................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0
...........................................................................................................................................................GTAGAGGTTGGGATATTTCATATAT....................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................................................GTGTAGAGGTTGGGATATTTCATAT......................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
..............................................................................................................CCCATAATATTAAAACCAGTTTTCATACG................................................................................................................ 29 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................CAAAGGTGCGTTTGATCAGAT... 21 1 20 0.05 1 0 0 0 1 0 0
....................................................................................................................................................................................................TTACTCAGCTATATTCGTACAGACAGACA.......................... 29 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13034:1429344-1429594 + dan_1103 CGAG-----TGCACGCTACTCCAACTATTG-------AACG-----AGCAA---------------------------------------------------------TTG---A---------AAG-----GA-------AT-----TT---------------------TGAGTAAGTATGATTTCTGTACCTTTTTATTGG----------------------------------------------------------------------AA---AT--------------------------------T-A-----------------------------------AC---TATTTTATTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGTCA-------AAAGTATGCAACGTTGTGAAGAAG-ACATCTCCAACCCTATA-AAGTATA--TATATTCTTGATCAGCCTC-----CTGAGTCGATATAAGCATGTCTGTCTGTCTGT------------TTCCACGCAAACTAGTCTCTCA
droBip1 scf7180000395685:8035-8299 + CGAC-----TGTATCCTATAGCTGCCATAT-------AACT-----G-----------ATTGATTAAAAT-GGTATTTGG------TAAAAATACCAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTATTTCTGGAGATAGAAGCTT-G------------G-------------------G--AC-----TTTTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGTCC-------AAAGTGTGCAACGCAGTGAAGGAG-ACATCTCCGACCCTATA-AAGTATA--TATATTCTTGATCAGAATCACCTCCTGAGTTGATATAAGCATGTCCGTCTGTCTGTCTGT--------TTCTACGCGAACTAGTCTCTCA
droKik1 scf7180000299767:12190-12434 + CGAG-----CAAAC-----------TT--G-------AA-------AGC------------------------------------------------------------------AATCGAAAA---TTCG------------TTATG-G--------------AATTTACAATTTATA------TT---------------------------------------CTAAACCAAAGATTTATAA-------------------------------------------------------------------T-------------TAA-------------------TTGGC---C--ATTTTTATGCCCTT-----G-------------C--AGGGTA-TT----ACAATTTTAGTCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACGTTTCCGACCCTATA-AAGTATA--TATATTCTCGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCATCTGTCCGT------------TTCTACGCAAACTAGTCCCTCA
droFic1 scf7180000452333:14643-14876 - CCAT-----C---------------TATTGACCATCGTAAG------------------------------------------------AAACCCTAA-----------------------------------AACTTGCTT-------TATAATC------------------------------------------------------A----------------------------------------------TC--TT------------------CTTTTA-AT--------------------------------------------------------------T---T--ATTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGCCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACACCTCAGACCCCATA-AATTATA--TATATTCTTGATCAGCATCACCTTCTGAATCGAAATACGTCTTTACGTCTGTCCGTCTGTCCGT----TTCTGGCCAAACTAGTCTCTCA
droEle1 scf7180000486458:4106-4343 - AAC----------------------TTTTGA---CTGAAAT-----T-------------------AAGG--------------------------------------T---------------------------------------TA-TAAATAAGGGTC-------------------GATTTT------------------------------------------------------TGT-------------TTCGTCCTGGAT----AA---G---------TT----------------------G-A---------------------------------TAAG-----TGTTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACATCTCCGACCCTATA-AAGTATA--TATATTCTTGATCAACATCATTATGCGAGTCGATCTAGCCATGACCGTCTGTCCGTCCGT--------TTCTACGCAAACTAGTCTCTCA
droRho1 scf7180000779812:30194-30453 + TAGG-----T-CACGGTATAG---TTAT--------CAGGCGAACA--------------------------------------------------------------TTG---A---------AAGTTCA------------ATTAA---------------------------------------------------------GTCTGCT------TAAAAT-------------------TT---------TTGTT--GCCCTGTGTTTTCAA---AT--------TT------------------------------------------------------------GG---T--ATTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAG-ACATCTCCGACCCTATA-AAGTATA--TATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCCGTCTGTCTGT----TTCTACGCAAACTAGTCTCTCA
droBia1 scf7180000302189:8742-8996 + CAAG-----AACAC--TAAAATAACGTT-------TAAAAT-----A-------------------GTAG-----------------------------------TAACTGCA-A---------AAA-----GAATTTGTCA-------AA----------------------------TAT---------------------------------------------------------------------------------------------------CATTTT-GTT-----------------------------TATATTTGT-------------------AT-ACCCT--TTTTTTAATACCCTT-----G-------------CAGAGGGTA-TA----ATAATTTCAGTCA-------GAAGTTCGCAACGCAGTGAAGGAG-ACGTTTCCGACACCATATAAGTATA--TATATTCTTGATCAGCGTCACTTGACGGGTCGATCTAGTCATGTCCGTCTGTCTGTCCGT--------TTCTACGCAAACTAGTCTCTCA
droTak1 scf7180000415837:8381-8647 - AGAG-----AGAACGCTATTA--ACTATAT-------TTCT-----TTCAG-------TTTCATAG-------------------------------------------------AACCGAGAA---TTA------------------------------------------------GTAGAGCTTACATGCCCTTTCTTTCA----------------------------------------------------------------------TT---TT--------------------------------T-TGCTACA----------------GTT------AT--AG-----CTTTATTATACCCTT-----G-------------CAGAGGGTA-TT----ATGATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACGTTTCCGACCCCATA-AAGTATA--TATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGT--------TTCTACGCAAACTAGTCTCTCA
droEug1 scf7180000405427:51944-52193 + ATTC-----A------------AACTATTG-------AAGG-----TGCATTTTCCAGCTAACTTCGAATTGGGCTCTGTTCGGCTCAGCAATACCAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------------------------G-------TTAATTATACCCGTTACTCG----T---AGAGTAAAAGGGTA-TA----CTAGATTCGTTGA-------AAAGTATGTAACAGGTAGAAGGAA-GCGTTTCCGACACTATA-AAGTATA--TATATTCTTGATCAGGATGAATAGCGAAGACGAATGAGCCATGTCTGTCTGTCTGTCCGT--------ATGAACG----CTGAGATCTCA
dm3 chrX:15832421-15832629 - TTTA-----AGGATATT--------T-----------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCCATGTATATAT----ATA--------------T-TTATATA----------------GTT------A----CTGA--ACTTGATATACCCTT-----G-------------CAGCGGGTCATTATCAATCAATTTGGCCA-------GACGCTTGCAACGCCGCGACGAAT-A---TTCCAATCTTGTA-AAGTAGA--TAGTT--------------------ATAGTATATATAAGCATGTCCGTATGTTTGTCTGTCTGTCCGTTGTTAAACAAACCAGTCACTCC
droSim2 node_111346:5407-5631 + TTTA-----ACAACC--------ATTG----------TA-------------------------------------------------------------------------------------ACG-----TG-------AT-----CT---------------------CTAGTAA---------------------------GTTTGGT-----------------------------------------------------------------------------------------------------------------------------------------T-ACCCTC--ATAATTATGCCTGTTACTCA----T---AGAGTAAAAGAATA-TA----CTATATTCGTTGA-------AAACTATGGAACATGCAGAAGGAAAGCGTTTCCGGCTATATA-CAGTATATATATATTCTTGATCAGGAACAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGT------------ATCAACGTCGAGATCTCCGGAA
droSec2 scaffold_131:17915-18141 - CGAC-----TA--TGCTATACCCGCTAC-------TAAGCT-----A-------------------GAGG------------------------------------GATTGTGCA---------AAG-----GA-------A---------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTT-----------------------------------------------------------------C--ATATTTATACACGTTACTCG----A---AGAGCAAAAGGGTA-TA----CCAGATTCGTTGA-------AAAGTATGTAACACGCCGAAGGAA-GCGTTTCCGACCATATT-AAGTATA--TATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTTCGTCTGTCCGTA------------TGAACG----TCGAGATCTTA
droYak3 v2_chrUn_2022:3008-3265 - TAAA-----AGCACACTACTACCATGGCT-------GATACGAGCG--------------------------------------------------------------CTA---G---------ACGCCGAGTCACTTGTTA-------AATTCTT------------------------------------------------------G----------------------------------------------TC--AC------------------CTTTTT-TT--------------------------------------------------------------T---T--ATAATTATACCCGTTACTCG----T---AGAGTAAAAGGGTA-TA----CTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAA-GGGTTTTCGACCATATA-AAGTATA--TATATTCTTGATCAGGACCAATAGCCGAGTCGATATGACCATGTCCGTCTGTCTGTCCGTCCG--------TATGAACGCTGTGATCTCA
droEre2 scaffold_4820:1768795-1769030 - AAC----------------------TTCTG-------AG---------C------------------------------------------------------------------AGAAGAAAT----------------------------------GGGTTGAATTTATGGACTAAATATTTACC-------------------------CAGAACCTA----------------ATTTTTGA-------------------------------------------------------------------TT-A------------G-------------------T--AC-----TCTTTTTATACCCGTTACTCG----T---AGAGTAAAAGGGTA-TA----CTAGATTCGTTTA-------AAAGTATGTAACAGGCAGAAGGAA-GCATTTCCGACCATATA-AAGTATA--TATATTCTTGATCAGGATCAATAACCGAGTCGAACTGGCCATGTCCGTCTGTCCGT------------ATGAACGC--------------
dp5 Unknown_singleton_817:1608-1865 - GTTA-----C----TCAAC----ATTATTC-------AACG------------------------------------------------GAATATCAAAATTGAGTAATAG------------------------------------------------GAAC-------------------GATTTT---------TCTCTTACGTCTTAT-----------------------------------------------------------------------------------------------------------------------------------------TAAG-----TTTTTTTATACCCGATACTCA----AAAT-GAGTATTGGGGTA-TA----TTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGTA-TCGTTTCCGACCCCATA-AAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTCCG--------TCCG----TCCGTCTGTCC
droPer2 scaffold_278:9318-9591 - CAATATGAATGTGTCCC-----ATTTTTTG-------AG----------------------------------------------------------------------------AACCGAAAT---TTGA------------GTTATGT---------------------CAATTAAATATTTTTC-------------------------CTCAATCTA----------------ATTTGA---------------T--G------------AA---TA--------TT------------------------------------------------------------GC---T--ATTTTTATACCCGATACTCA----AAAT-GAGTATTGGGGTA-TA----TTCGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAA-TCGTTTCCGACCCCATA-AAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTCCG--------TCCG----TCCGTCTGTCC
droWil2 scf2_1100000004729:2667837-2668089 + GAGG------GCACGAAATTC--------GA---ATGAACC-----A-------------------GAGA--------------------------------------TGG---C---------CAG-----TA-------AT---------------------------------------------------------------TTCGCTCACGGTCTA----------------ATCCTTATTTAAAGTTTTTATA-----------------GAATTCACGTA-AT--------------------------------------------------------------T---T--ATTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAAAATTGGTTA-------AATGTTTGTAACGCACAGAAGGAG-ACGTTTCCGACCCCATA-AAGTATA--CATATTCTTGATCAGCATGGGAAGCTGAGTCGATATAGTCATGTCCGTCTGTGCAA------------ATCAACT----TCACGCCGCCA
droVir3 scaffold_13324:369125-369363 + CGTG-----TGTATTTTACTTTATTTAT----------------------------------------------------------------------------------------------------TCA------------TTTTG---------------------------------------------------------GTATATT------TAATATTGCTGCGACTTTGATTTCTTT-------------------------------------------------------------------T-------------TGT-------------------TT-CC-----CCTTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATGATTATGTCGT-------AAAATGTGTAACGCATAGAAAGAG-ACATCTCCGACCCCATA-AAGTATA--TATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCTGT------------TTCTCTGCGAACTAGTCCCTCA
droMoj3 scaffold_6540:7959158-7959410 - CGTT-----TTAATGCTACGCCAACTGTCG-------AAGG---------------------------------------------------------------------------------------------ATCTGTTCTTTTCT---------------------------------------------------------G------CTTGCTCTA----------------CTTCTT---------------C--GTC------------------------------------------------TT-G------------T-------------------G--TC-----TCTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTA-TA----ATGGTTTTG-TGA-------AAAGTATGTAACAGGCAGAAGGAA-TCATCGCAGACCCCATA-AAGTATA--TATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCG--------TCCG----TCCGTCCCTCC
droGri2 scaffold_15203:4022073-4022356 - TGGG-----TTTGCCCA-----ATCTTCTC-------AATA-----AACAG---------------------------------------------------------TTT---A---------A-------------------------------------------------------------------------------------------------------------------------------------------------------TATCCCATGTATTT-T----ATA--------------TTTTATTTAT-TTTGTACATTATTAATTTTAGCT-AA-ACTAT--TCTTTTTATACCATGAATCCATTAAAAATGGGTAAAAAGGGTA-TA----ATGGTTTTGTGCG-------AATGTATGTAACTGCCAGAAGGAA-GCATCTCCAACCCCATA-AAGTATA--TATATTCTTGTTCAGGGTCAACAGCCGCGTCGATATTGCCATGTCCGCCTGTCCGTCCGTCTGT----CTCTATGAACACGCATACCTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGAG-----TGCACGCTACTCCAACTATTG-------AACG-----AGCAA---------------------------------------------------------TTG---A---------AAG-----GA-------AT-----TT---------------------TGAGTAAGTATGATTTCTGTACCTTTTTATTGG----------------------------------------------------------------------AA---AT--------------------------------T-A-----------------------------------AC---TATTTTATTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGTCA-------AAAGTATGCAACGTTGTGAAGAAG-ACATCTCCAACCCTATA-AAGTATA--TATATTCTTGATCAGCCTC-----CTGAGTCGATATAAGCATGTCTGTCTGTCTGT------------TTCCACGCAAACTAGTCTCTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATAAGCATGTCTGTCTGTCTGT------------TT....................2820.501100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGCAAACTAGTCTCTCA21110.091010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--TATATTCTTGATCAGC..........................................................................19200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----CTGAGTCGATATAAGCATGTCTGC..........................................26200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCA-------AAAGTATGCAACG.................................................................................................................................22200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................TT----ATAATTTTGGTCA-------AAAGTAT.......................................................................................................................................22200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-----CTGAGTCGATATAAGCATGTCTGTC.........................................28200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................CTT-----G-------------CAGAGGGTA-TT----ATAATTT...........................................................................................................................................................22200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................GGTA-TT----ATAATTTTGGTCA-------AAAGTAT.......................................................................................................................................26200.051010000
droBip1
CGAC-----TGTATCCTATAGCTGCCATAT-------AACT-----G-----------ATTGATTAAAAT-GGTATTTGG------TAAAAATACCAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTATTTCTGGAGATAGAAGCTT-G------------G-------------------G--AC-----TTTTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGTCC-------AAAGTGTGCAACGCAGTGAAGGAG-ACATCTCCGACCCTATA-AAGTATA--TATATTCTTGATCAGAATCACCTCCTGAGTTGATATAAGCATGTCCGTCTGTCTGTCTGT--------TTCTACGCGAACTAGTCTCTCASizeHit CountTotal NormTotal
No Reads
droKik1
CGAG-----CAAAC-----------TT--G-------AA-------AGC------------------------------------------------------------------AATCGAAAA---TTCG------------TTATG-G--------------AATTTACAATTTATA------TT---------------------------------------CTAAACCAAAGATTTATAA-------------------------------------------------------------------T-------------TAA-------------------TTGGC---C--ATTTTTATGCCCTT-----G-------------C--AGGGTA-TT----ACAATTTTAGTCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACGTTTCCGACCCTATA-AAGTATA--TATATTCTCGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCATCTGTCCGT------------TTCTACGCAAACTAGTCCCTCASizeHit CountTotal NormTotal
No Reads
droFic1
CCAT-----C---------------TATTGACCATCGTAAG------------------------------------------------AAACCCTAA-----------------------------------AACTTGCTT-------TATAATC------------------------------------------------------A----------------------------------------------TC--TT------------------CTTTTA-AT--------------------------------------------------------------T---T--ATTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGCCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACACCTCAGACCCCATA-AATTATA--TATATTCTTGATCAGCATCACCTTCTGAATCGAAATACGTCTTTACGTCTGTCCGTCTGTCCGT----TTCTGGCCAAACTAGTCTCTCASizeHit CountTotal NormTotal
No Reads
droEle1
AAC----------------------TTTTGA---CTGAAAT-----T-------------------AAGG--------------------------------------T---------------------------------------TA-TAAATAAGGGTC-------------------GATTTT------------------------------------------------------TGT-------------TTCGTCCTGGAT----AA---G---------TT----------------------G-A---------------------------------TAAG-----TGTTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACATCTCCGACCCTATA-AAGTATA--TATATTCTTGATCAACATCATTATGCGAGTCGATCTAGCCATGACCGTCTGTCCGTCCGT--------TTCTACGCAAACTAGTCTCTCASizeHit CountTotal NormTotal
No Reads
droRho1
TAGG-----T-CACGGTATAG---TTAT--------CAGGCGAACA--------------------------------------------------------------TTG---A---------AAGTTCA------------ATTAA---------------------------------------------------------GTCTGCT------TAAAAT-------------------TT---------TTGTT--GCCCTGTGTTTTCAA---AT--------TT------------------------------------------------------------GG---T--ATTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAG-ACATCTCCGACCCTATA-AAGTATA--TATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCCGTCTGTCTGT----TTCTACGCAAACTAGTCTCTCASizeHit CountTotal NormTotal
No Reads
droBia1
CAAG-----AACAC--TAAAATAACGTT-------TAAAAT-----A-------------------GTAG-----------------------------------TAACTGCA-A---------AAA-----GAATTTGTCA-------AA----------------------------TAT---------------------------------------------------------------------------------------------------CATTTT-GTT-----------------------------TATATTTGT-------------------AT-ACCCT--TTTTTTAATACCCTT-----G-------------CAGAGGGTA-TA----ATAATTTCAGTCA-------GAAGTTCGCAACGCAGTGAAGGAG-ACGTTTCCGACACCATATAAGTATA--TATATTCTTGATCAGCGTCACTTGACGGGTCGATCTAGTCATGTCCGTCTGTCTGTCCGT--------TTCTACGCAAACTAGTCTCTCASizeHit CountTotal NormTotal
No Reads
droTak1
AGAG-----AGAACGCTATTA--ACTATAT-------TTCT-----TTCAG-------TTTCATAG-------------------------------------------------AACCGAGAA---TTA------------------------------------------------GTAGAGCTTACATGCCCTTTCTTTCA----------------------------------------------------------------------TT---TT--------------------------------T-TGCTACA----------------GTT------AT--AG-----CTTTATTATACCCTT-----G-------------CAGAGGGTA-TT----ATGATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAG-ACGTTTCCGACCCCATA-AAGTATA--TATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGT--------TTCTACGCAAACTAGTCTCTCASizeHit CountTotal NormTotal
No Reads
droEug1
ATTC-----A------------AACTATTG-------AAGG-----TGCATTTTCCAGCTAACTTCGAATTGGGCTCTGTTCGGCTCAGCAATACCAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------------------------G-------TTAATTATACCCGTTACTCG----T---AGAGTAAAAGGGTA-TA----CTAGATTCGTTGA-------AAAGTATGTAACAGGTAGAAGGAA-GCGTTTCCGACACTATA-AAGTATA--TATATTCTTGATCAGGATGAATAGCGAAGACGAATGAGCCATGTCTGTCTGTCTGTCCGT--------ATGAACG----CTGAGATCTCASizeHit CountTotal NormTotal
No Reads
dm3
TTTA-----AGGATATT--------T-----------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCCATGTATATAT----ATA--------------T-TTATATA----------------GTT------A----CTGA--ACTTGATATACCCTT-----G-------------CAGCGGGTCATTATCAATCAATTTGGCCA-------GACGCTTGCAACGCCGCGACGAAT-A---TTCCAATCTTGTA-AAGTAGA--TAGTT--------------------ATAGTATATATAAGCATGTCCGTATGTTTGTCTGTCTGTCCGTTGTTAAACAAACCAGTCACTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGA--TAGTT--------------------ATAGTATAT........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTGTCTGTCCGTTGT...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTGTCTGTCCG.......................1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTA-----ACAACC--------ATTG----------TA-------------------------------------------------------------------------------------ACG-----TG-------AT-----CT---------------------CTAGTAA---------------------------GTTTGGT-----------------------------------------------------------------------------------------------------------------------------------------T-ACCCTC--ATAATTATGCCTGTTACTCA----T---AGAGTAAAAGAATA-TA----CTATATTCGTTGA-------AAACTATGGAACATGCAGAAGGAAAGCGTTTCCGGCTATATA-CAGTATATATATATTCTTGATCAGGAACAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGT------------ATCAACGTCGAGATCTCCGGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCT........................................25205.15103004000020097000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACATGCAGAAGGAAAGCGTT................................................................................................................2614.00400000000004000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACAATAGCCGAGTCGATCTA.....................................................2514.00400000020110000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAACTATGGAACATGC..............................................................................................................................2414.00400000010300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATATTCTTGATCAGGAAC.......................................................................2614.00400200010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAACTATGGAACATGCAGAAGGAA......................................................................................................................2514.00400000000000040000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAACTATGGAACATGCAGAAGGA.......................................................................................................................2412.00200000000000020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACATGCAGAAGGAAAGCGT.................................................................................................................2512.00200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCCGT------------ATCAACGTCGAGATC.......2612.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGTTGA-------AAACTATGGAACATGC..............................................................................................................................2612.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACAATAGCCGAGTCGATCTAGC...................................................2712.00200000020000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATATTCTTGATCAGGAACA......................................................................2712.00200000000100010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAACTATGGAACATGCAGAAGGAAAGC...................................................................................................................2812.00200000020000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT................................................24201.8537001100020222090000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTG.......................................26201.1523001500000017000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAACTATGGAACATGCAGAAGGAT......................................................................................................................2511.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATATTCTTGATCAGGAACT......................................................................2711.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAATAGCCGAGTCGATCTAGC...................................................2511.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAACTATGGAACATGCAGAA..........................................................................................................................2711.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAACTATGGAACATGCAGA...........................................................................................................................2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGT------------ATCAACGTCGAGATCTCCGGA.2811.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AAACTATGGAACATGCAGAAGGAA......................................................................................................................2711.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGAACAATAGCCGAGT............................................................2511.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAACTATGGAACATGCAG............................................................................................................................2511.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATATTCTTGATCAGGAA........................................................................2511.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAACTATGGAACATGCAGAAGG........................................................................................................................2311.00100000000000010000
.............................................................................................................................CG-----TG-------AT-----CT---------------------CTAGTAA---------------------------GTTTGGT-----------------------------------------------------------------------------------------------------------------------------------------T-ACCCT......................................................................................................................................................................................................................2811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGT------------ATCAACGTCGAGATCTCCGGAA2711.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAACTATGGAACATGCAGAAGGAAAGCG..................................................................................................................2911.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGAACAATAGCCGAGT............................................................3011.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTC.............................................24200.9519000000330310000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGT..........................................23200.8517000300000113000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCG...........................................26200.651300000010804000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCGT------------A.....................24200.651300100043122000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTC.........................................26200.6513000000001011100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACAATAGCCGAGTCGATC.......................................................2320.50100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGT..............................................26200.45900000000007020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTC.............................................22200.40800000006002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGTC.........................................27200.40800010011005000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGTCCGT------------A.....................26200.35700000022120000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGAAGGAAAGC...................................................................................................................1530.33100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT................................................19200.30600000000006000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGT..........................................25200.30600000002003010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGTC.....................................25200.30600000000006000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGT------------A.....................22200.30600000012102000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCATGTC.............................................26200.25500010000004000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGTC.........................................28200.25500000012101000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGTC.............................................19200.25500000000005000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCCG...................................26200.25500200000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTT.......................................26200.25500000000005000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGTCCGTCT........................................24200.25500000000005000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTC.........................................24200.25500050000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGT..........................................27200.25500200000102000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCC............................................25200.15300000000003000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATG...............................................17200.15300000000003000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGT..........................................26200.15300000000011010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATG...............................................22200.15300300000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG...................................22200.10200100000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATG...............................................25200.10200020000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTC.....................................24200.10200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCG...........................................22200.10200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGT..............................................19200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGT..............................................23200.10200000011000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG.......................................23200.10200000000101000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTCC............................................28200.10200020000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCC..................................................18200.10200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCC..................................................15200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCCGT------------A.....................28200.10200000011000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCCGT------------......................26200.10200000020000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCT........................................16200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCCG...................................25200.10200000000200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGT------------ATCAACGTAT............25110.09100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGAACAG.....................................................................21150.07100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCT........................................15200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGT..........................................17200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTC.....................................21200.05100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGT..............................................22200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCC............................................23200.05100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGT------------AT....................23200.05100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTC.............................................23200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTC.............................................27200.05100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAGCCATGTCCG...........................................27200.05100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGTC.........................................22200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATG...............................................21200.05101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGT......................................24200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGG..............................................26200.05100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCG...................................21200.05110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCC..................................................19200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATG...............................................20200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGT------------......................21200.05100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGT..........................................20200.05101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCCGT------------A.....................27200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCC............................................15200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGG------------......................21200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCTG.......................................28200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCG...........................................24200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCA.................................................23200.05100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCG...........................................25200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCT........................................27200.05100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCTGT......................................29200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAG....................................................20200.05100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTC.........................................19200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGAACAG.....................................................................15200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCATGT..............................................25200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCA.................................................18200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCGT------------......................23200.05100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGTCTGTC.....................................26200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGT......................................23200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT................................................21200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGT..............................................18200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCAT................................................18200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGT..............................................20200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTGT......................................27200.05100000000001000000
droSec2
CGAC-----TA--TGCTATACCCGCTAC-------TAAGCT-----A-------------------GAGG------------------------------------GATTGTGCA---------AAG-----GA-------A---------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTT-----------------------------------------------------------------C--ATATTTATACACGTTACTCG----A---AGAGCAAAAGGGTA-TA----CCAGATTCGTTGA-------AAAGTATGTAACACGCCGAAGGAA-GCGTTTCCGACCATATT-AAGTATA--TATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTTCGTCTGTCCGTA------------TGAACG----TCGAGATCTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................ACACGTTACTCG----A---AGAGCA.................................................................................................................................................................................1911.0010010
......................................................................................................................................................................................................................................................................................................................................................................................ACTCG----A---AGAGCAAAAGGG...........................................................................................................................................................................1811.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGGTA-TA----CCAGATTCGT........................................................................................................................................................2211.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--TATATTCTTGATCAGGAT........................................................................22200.0511000
droYak3
TAAA-----AGCACACTACTACCATGGCT-------GATACGAGCG--------------------------------------------------------------CTA---G---------ACGCCGAGTCACTTGTTA-------AATTCTT------------------------------------------------------G----------------------------------------------TC--AC------------------CTTTTT-TT--------------------------------------------------------------T---T--ATAATTATACCCGTTACTCG----T---AGAGTAAAAGGGTA-TA----CTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAA-GGGTTTTCGACCATATA-AAGTATA--TATATTCTTGATCAGGACCAATAGCCGAGTCGATATGACCATGTCCGTCTGTCTGTCCGTCCG--------TATGAACGCTGTGATCTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................A-TA----CTAGATTCGTTGA-------AAAGTAT.......................................................................................................................................23200.35700000070000
................................................................................................................................................................................................................................................................................................................................................................................................................A-TA----CTAGATTCGTTGA-------AAAGT.........................................................................................................................................21200.30606000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAA-GGGTTTT..............................................................................................................2750.20100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCCG--------TATGAACGCTGTG......27200.10202000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAA-GGGT.................................................................................................................20200.10200000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAA-GG...................................................................................................................20200.10200200000000
..............................................................................................................................................................................................................................................................................................................................................................................TACCCGTTACTCG----T---AGAGTAAAAGGG...........................................................................................................................................................................26200.10200200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAA-GGGTT................................................................................................................25200.05100010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGA..............................................................24200.05100100000000
droEre2
AAC----------------------TTCTG-------AG---------C------------------------------------------------------------------AGAAGAAAT----------------------------------GGGTTGAATTTATGGACTAAATATTTACC-------------------------CAGAACCTA----------------ATTTTTGA-------------------------------------------------------------------TT-A------------G-------------------T--AC-----TCTTTTTATACCCGTTACTCG----T---AGAGTAAAAGGGTA-TA----CTAGATTCGTTTA-------AAAGTATGTAACAGGCAGAAGGAA-GCATTTCCGACCATATA-AAGTATA--TATATTCTTGATCAGGATCAATAACCGAGTCGAACTGGCCATGTCCGTCTGTCCGT------------ATGAACGC--------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAACCGAGTCGAACTGGCCAT................................................2590.1111000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTA-TA----CTAGATTCGT........................................................................................................................................................22200.0510000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGT------------ATGAAC................22200.0510000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCGT------------......................21200.0511000000
dp5
GTTA-----C----TCAAC----ATTATTC-------AACG------------------------------------------------GAATATCAAAATTGAGTAATAG------------------------------------------------GAAC-------------------GATTTT---------TCTCTTACGTCTTAT-----------------------------------------------------------------------------------------------------------------------------------------TAAG-----TTTTTTTATACCCGATACTCA----AAAT-GAGTATTGGGGTA-TA----TTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGTA-TCGTTTCCGACCCCATA-AAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTCCG--------TCCG----TCCGTCTGTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCG...............................................................20207.45149014900000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTA....................................................................................................................................23201.402802800000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCT................................24201.352702700000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTCTGTCTGTCCGTC.................................21200.601201200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGT.......................................................................................................................21140.5070300013000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGCCATG...............................................26200.3570700000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGT.......................................................................................................................................20200.3060000006000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATA-AAGTATA--TAT.......................................................................................27200.3060600000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGATT.......................................................28200.1530000000030
.......................................................................................................................................................................................................................................................................................................................................................................................CTCA----AAAT-GAGTATTGGGGTA-TA----T.................................................................................................................................................................24200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGTA-TCGTTTCCGA...........................................................................................................2190.1110100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTA-TCGTTTCCGACCCCATA-AAG................................................................................................2590.1110000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTA-TCGTTTCCGACCCCATA-AAGTA..............................................................................................2990.1110000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGTA-TCGTTTCCGACCCCA......................................................................................................2590.1110000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TCGTTTCCGACCCCATA-AAGTA..............................................................................................24100.1010000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCTGTCCG--------TCCG----TC.........22200.1020020000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCA......................................................................20200.1020000000020
........................................................................................................................................................................................................................................................................................................................................................................TTTTTATACCCGATACTCA----AAAT-G.....................................................................................................................................................................................24200.1020020000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGT.......................................................................................................................22140.0710000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGTCCAGAAGGT.......................................................................................................................25140.0710000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCTGTCCG--------TC.................18200.0510000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCTGTC.............................22200.0510000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCTGTCCG--------TCCG----TCCGTC.....25200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCTGTCCG--------TCCG----T..........25200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATA--TATATTCTTGATCAGCATC.......................................................................26200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCTGTCCG--------TC.................22200.0510000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTG......................................................................................................................................21200.0510000010000
..........................................................................................................................................................................................................................................................................................................................................................................................A----AAAT-GAGTATTGGGGTA-TA----TTAGA.............................................................................................................................................................25200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCC................................................................25200.0510000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCC................................................................23200.0510001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTCTGTCCG--------TCCG----...........21200.0510000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCATGTCTGTCT........................................27200.0510010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGT..................................22200.0510010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAGCCATGT..............................................20200.0510000001000
droPer2
CAATATGAATGTGTCCC-----ATTTTTTG-------AG----------------------------------------------------------------------------AACCGAAAT---TTGA------------GTTATGT---------------------CAATTAAATATTTTTC-------------------------CTCAATCTA----------------ATTTGA---------------T--G------------AA---TA--------TT------------------------------------------------------------GC---T--ATTTTTATACCCGATACTCA----AAAT-GAGTATTGGGGTA-TA----TTCGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAA-TCGTTTCCGACCCCATA-AAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTCCG--------TCCG----TCCGTCTGTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACGTC...............................................................................................................................21200.204400000
.................................................................................................................................................................................................................................................................................................................................................................................................AT-GAGTATTGGGGTA-TA----TTCGATT...........................................................................................................................................................24200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................ATACCCGATACTCA----AAAT-GAG...................................................................................................................................................................................21200.051000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTAACGT................................................................................................................................28200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTGTCTGTCCGTCTGTCCG--------TCC................28200.051100000
droWil2
GAGG------GCACGAAATTC--------GA---ATGAACC-----A-------------------GAGA--------------------------------------TGG---C---------CAG-----TA-------AT---------------------------------------------------------------TTCGCTCACGGTCTA----------------ATCCTTATTTAAAGTTTTTATA-----------------GAATTCACGTA-AT--------------------------------------------------------------T---T--ATTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATAAAATTGGTTA-------AATGTTTGTAACGCACAGAAGGAG-ACGTTTCCGACCCCATA-AAGTATA--CATATTCTTGATCAGCATGGGAAGCTGAGTCGATATAGTCATGTCCGTCTGTGCAA------------ATCAACT----TCACGCCGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAACGCACAGAAGGAG-ACGTTTCCG............................................................................................................28200.25500500
....................................................................................................................................................................................................................................................................................................................................................................................T-----G-------------CAGAGGGTA-TT----ATAAAATTGGTT......................................................................................................................................................25140.14200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATA-AAGTATA--CATATTCTTGATC.............................................................................26150.07100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAG-ACGTTTCCGACCCCATA-...................................................................................................23200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................ATTTTTATACCCTT-----G-------------CAG...............................................................................................................................................................................18200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACAGAAGGAG-ACGTTTCCGACCCC.......................................................................................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAA------------ATCAACT----TCACGCCGCCA25200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAACGCACAGAAGGAG-ACGT.................................................................................................................23200.05100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAA------------ATCAACT----TCACGCCGC..21200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCCCATA-AAGTATA--CATA......................................................................................25200.05101000
........................................................................................................................................................................................................................................................................................................................................................................TTTTTATACCCTT-----G-------------CAGAGG............................................................................................................................................................................20200.05100010
droVir3
CGTG-----TGTATTTTACTTTATTTAT----------------------------------------------------------------------------------------------------TCA------------TTTTG---------------------------------------------------------GTATATT------TAATATTGCTGCGACTTTGATTTCTTT-------------------------------------------------------------------T-------------TGT-------------------TT-CC-----CCTTTTTATACCCTT-----G-------------CAGAGGGTA-TT----ATGATTATGTCGT-------AAAATGTGTAACGCATAGAAAGAG-ACATCTCCGACCCCATA-AAGTATA--TATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCTGT------------TTCTCTGCGAACTAGTCCCTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAGAG-.....................................................................................................................23162.0032000011001000000000002000225513041002100100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTGTAACGCATAGAAAGAG-AC...................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAGAG-ACA..................................................................................................................26150.8012000010000000000000000000010100101040210000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAGAG-A....................................................................................................................24150.477000000000000000000000000300101100010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTG...................................20200.408000000000000000000007000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAG........................................................................................................................21160.386000011000000000000000001000000010001000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCCG...............................................................27200.357000000000000000000000000000050200000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAGAG-AC...................................................................................................................25150.335000000000000000000000000000002010000100100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAA.........................................................................................................................20200.255000000000000000000000000010200000010010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGT-------AAAATGTGTAACGCATAGA...........................................................................................................................25130.233000000000000000000000000011000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAGAG-ACATC................................................................................................................28120.172000000000000000000000000001001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAAGAG-ACATCTCCGACC.........................................................................................................26120.172000000000000000000000000001000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAAGAG-.....................................................................................................................22160.132001000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAGA.......................................................................................................................22160.132000000100000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-AAGTATA--TATATTCTTAATCAGCA.........................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCGAG.............................................................25200.102002000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGA.........................................................25200.102000000000000000000000000002000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATATAGCCATGTCCGTC.........................................21200.102000000000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAG.............................................................18200.102000000000000000000000000000000000200000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA--TATATTCTTAATCAGCATCAAC....................................................................27200.102000000000000000000000000002000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGA.........................................................26200.102000000000000000000002000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATA.....................................................25200.102001000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATAGAAAGAG-ACATCTCCGACCC........................................................................................................26120.081000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGT-------AAAATGTGTAACGCATAGAA..........................................................................................................................25130.081000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGCATAGAAAGAG-ACATCTCC.............................................................................................................25130.081000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAAGAG-ACATCTCCGACCCCA......................................................................................................25130.081001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAAGAG-ACATCTCC.............................................................................................................22140.071001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGCATAGAAAGAG-ACATCTCC.............................................................................................................24140.071000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAAGAG-A....................................................................................................................23150.071000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGCATAGAAAGAG-AC...................................................................................................................22160.061001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTAACGCATAGAAAG........................................................................................................................19170.061001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAAT........................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAATCAGCATCAACAGCC................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCC................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TATATTCTTAATCAGCATCAA.....................................................................22200.051000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCGAGTCG..........................................................28200.051000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGTCGATATAGCCAT................................................21200.051000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGATA.......................................................28200.051000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCCATGTCCGTCTGTCTGT------------TT....................25200.051000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAACAGCCGAGTC...........................................................18200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGATAT......................................................28200.051000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGTCT........................................21200.051000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCCGTCTGTCT....................................24200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAGC.................................................................24200.051000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCG...............................................................23200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGT-------AAAATGTGTAACGC................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGATA.......................................................27200.051000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTGTAACGCATAGAA..........................................................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAACAGCCGAGTCGATA.......................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGTC.........................................20200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATATAGCCATGTCCGTCT........................................25200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--TATATTCTTAATCAGCATCAA.....................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCCGAGTCGATATAGCC..................................................25200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATATAGCCATGT..............................................21200.051000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGCATAGAAAGAG-.....................................................................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--TATATTCTTAATCAGCATCAACAGCCG...............................................................29200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATATAGC...................................................28200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGCCATGTCCGTCTGTCT....................................22200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCATGT..............................................27200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATATAGCCATGTCCGTC.........................................26200.051000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAA.....................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TATATTCTTAATCAGCATCAACAGCC................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCCATA-AAGTATA--TATATTC...................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
CGTT-----TTAATGCTACGCCAACTGTCG-------AAGG---------------------------------------------------------------------------------------------ATCTGTTCTTTTCT---------------------------------------------------------G------CTTGCTCTA----------------CTTCTT---------------C--GTC------------------------------------------------TT-G------------T-------------------G--TC-----TCTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTA-TA----ATGGTTTTG-TGA-------AAAGTATGTAACAGGCAGAAGGAA-TCATCGCAGACCCCATA-AAGTATA--TATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCG--------TCCG----TCCGTCCCTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGAGTCGATATAGCCCT................................................22200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAGTATA--TATATTCTTGATC.............................................................................21200.102200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGACGACGAGCTGAGT............................................................22200.102200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAA-TC...................................................................................................................21200.051000001
droGri2
TGGG-----TTTGCCCA-----ATCTTCTC-------AATA-----AACAG---------------------------------------------------------TTT---A---------A-------------------------------------------------------------------------------------------------------------------------------------------------------TATCCCATGTATTT-T----ATA--------------TTTTATTTAT-TTTGTACATTATTAATTTTAGCT-AA-ACTAT--TCTTTTTATACCATGAATCCATTAAAAATGGGTAAAAAGGGTA-TA----ATGGTTTTGTGCG-------AATGTATGTAACTGCCAGAAGGAA-GCATCTCCAACCCCATA-AAGTATA--TATATTCTTGTTCAGGGTCAACAGCCGCGTCGATATTGCCATGTCCGCCTGTCCGTCCGTCTGT----CTCTATGAACACGCATACCTCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:29 AM