ID:

dan_1088

 Coordinate:

scaffold_13016:5371-5521 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.9 -3.8 -3.8 -3.7

Flybase annnotation

CDS [Dana\GF21525-cds]; exon [dana_GLEANR_4816:3]; intron [Dana\GF21525-in]

No Repeatable elements found

mature
  1. scaffold_7818:1071-1091 +
  2. scaffold_10706:709-729 +
  3. scaffold_12905:273607-273627 +
  4. scaffold_12944:186263-186283 +
  5. scaffold_12947:208478-208498 +
  6. scaffold_12948:581087-581107 +
  7. scaffold_13052:10595-10615 +
  8. scaffold_13082:978783-978803 +
  9. scaffold_13137:1091156-1091176 +
  10. scaffold_13137:1145696-1145716 +
  11. scaffold_13164:274073-274093 +
  12. scaffold_13165:411097-411117 +
  13. scaffold_13228:506615-506635 +
  14. scaffold_13230:2267730-2267750 +
  15. scaffold_13248:4491227-4491247 +
  16. scaffold_13258:493758-493778 +
  17. scaffold_13280:561958-561978 +
  18. scaffold_13280:568742-568762 +
  19. scaffold_13280:575939-575959 +
  20. scaffold_13337:8707702-8707722 +
  21. scaffold_4631:419-439 -
  22. scaffold_8090:575-595 -
  23. scaffold_9326:163-183 -
  24. scaffold_12916:3242314-3242334 -
  25. scaffold_13043:161164-161184 -
  26. scaffold_13045:560197-560217 -
  27. scaffold_13082:2683384-2683404 -
  28. scaffold_13082:3626501-3626521 -
  29. scaffold_13089:608560-608580 -
  30. scaffold_13099:351473-351493 -
  31. scaffold_13137:135320-135340 -
  32. scaffold_13230:3530923-3530943 -
  33. scaffold_13250:1682200-1682220 -
  34. scaffold_13250:2362570-2362590 -
  35. scaffold_13260:642996-643016 -
  36. scaffold_13266:19832930-19832950 -
  37. scaffold_13280:885971-885991 -
  38. scaffold_13417:5600643-5600663 -
  39. scaffold_13417:6384497-6384517 -
  40. scaffold_13499:1183452-1183472 -
  41. scaffold_671:753-773 +
  42. scaffold_4576:7091-7111 +
  43. scaffold_7381:546-566 +
  44. scaffold_9474:6755-6775 +
  45. scaffold_12911:153592-153612 +
  46. dan_1088  scaffold_13016:5403-5423 +
  47. scaffold_13082:3789526-3789546 +
  48. scaffold_13099:2380033-2380053 +
  49. scaffold_13099:2674181-2674201 +
  50. scaffold_13099:2694155-2694175 +
  51. scaffold_13099:3169340-3169360 +
  52. scaffold_13118:117369-117389 +
  53. scaffold_13120:4319-4339 +
  54. scaffold_13228:138771-138791 +
  55. scaffold_13228:266558-266578 +
  56. scaffold_13239:409023-409043 +
  57. scaffold_13239:591560-591580 +
  58. scaffold_13250:1621612-1621632 +
  59. scaffold_13272:459862-459882 +
  60. scaffold_13499:614335-614355 +
star
  1. scaffold_1791:1183-1207 +
  2. scaffold_3910:1697-1721 +
  3. scaffold_4576:7130-7154 +
  4. scaffold_6962:1420-1444 +
  5. scaffold_7381:585-609 +
  6. scaffold_12911:2168473-2168497 +
  7. scaffold_12943:958837-958861 +
  8. dan_1088  scaffold_13016:5442-5466 +
  9. scaffold_13082:399303-399327 +
  10. scaffold_13117:5124704-5124728 +
  11. scaffold_13118:115051-115075 +
  12. scaffold_13228:266597-266621 +
  13. scaffold_13248:936090-936114 +
  14. scaffold_13248:3825184-3825208 +
  15. scaffold_13280:495782-495806 +
  16. scaffold_13337:16912082-16912106 +
  17. scaffold_13339:1337998-1338022 +
  18. scaffold_13339:1525421-1525445 +
  19. scaffold_13339:4358231-4358255 +
  20. scaffold_13417:5600326-5600350 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAATCTCAGATTTTCTACATTAATTTTTGGTCTTCTACGATTTTTTTCCAAACATTTTCCCATGGAAGATTTTTATTTTCTTATTGAAATCAGTAGATCATACCATGTTTTAATTTTGGATTTAAGGAAAAACTCGAAATAATTTTATTGAAATTATTATAGGTGGTTAAACAATATTTTCTTCTATTCTATTATTATAGGTGGTGGTGGAAACCACATATTCAACAGCAGCAGTGGGAAAACAGAAACC
**********************************************************************************....((..((..((((((...................))))))..))...............))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
..................................................................................TATTGAAATCAGTAGATCATA.................................................................................................................................................... 21 0 20 0.20 4 0 0 4 0
..........................................................................................TCAGTAGATCATACCATGTTTTAAT........................................................................................................................................ 25 0 20 0.15 3 0 3 0 0
.....................................................................................TGAAATCAGTAGATCATACCATGTTT............................................................................................................................................ 26 0 20 0.10 2 0 2 0 0
............................................TTTTCCAAACATTTTCCCATGGAAGATTT.................................................................................................................................................................................. 29 0 20 0.10 2 2 0 0 0
...............................................TCCAAACATTTTCCCATGGAAGATTT.................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0
.........................................................................................ATCAGTAGATCATACCATGT.............................................................................................................................................. 20 0 20 0.10 2 0 2 0 0
............................................................................................AGTAGATCATACCATGTTTTA.......................................................................................................................................... 21 0 20 0.10 2 0 2 0 0
.......................................................................................................................................................................................................AGATGGTGCTGGTAACCACA................................ 20 3 12 0.08 1 0 0 0 1
.................................................................................................................................................................................................................................ATAGCAGCAGGGGGAAAA........ 18 2 14 0.07 1 1 0 0 0
.........................................................................................................................TTTAAGGAAAAACTCGAAATAATTT......................................................................................................... 25 0 20 0.05 1 0 1 0 0
...................................................................................................................TTTGGATTTAAGGAAAAACTCGAAA............................................................................................................... 25 0 20 0.05 1 1 0 0 0
...............................................TCCAAACATTTTCCCATGGAAGATC................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
...............................................TCCAAACATTTTCCCATGGAAGATT................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.......................................................................................AAATCAGTAGATCATACCATGT.............................................................................................................................................. 22 0 20 0.05 1 0 1 0 0
................................................................................................................................................TTTATTGAAATTATTATAGGTGTTT.................................................................................. 25 1 20 0.05 1 0 0 0 1
..................................................................................................................................AAACTCGAAATAATTTTATTGAAAT................................................................................................ 25 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................ATTGTTATAGGTGGTGGCA......................................... 19 3 20 0.05 1 0 1 0 0
......................................................................................GAAATCAGTAGATCATACCATG............................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
.........................................................................................ATCAGTAGATCATACCATGTTTTA.......................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
............................................TGTTCCAAACATTTTCCCATGGAAGATTT.................................................................................................................................................................................. 29 1 20 0.05 1 1 0 0 0
.....................................................................................................................................................TGAAATTATTATAGGTGGTTAAA............................................................................... 23 0 20 0.05 1 1 0 0 0
...........................................TTTTTCCAAACATTTTCCCATGGAAGA..................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.............TTCTACATTAATTTTTGGTGTTCTAC.................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0
............................................TTTTCCAAACATTTTCCCATGGAAGATT................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
......................................................................................GAAATCAGTAGATCATACCATGTTC............................................................................................................................................ 25 1 20 0.05 1 1 0 0 0
......................................................................................................................................................................................................TAGGTGGTTATGGTAACC................................... 18 3 20 0.05 1 1 0 0 0
..................................................................................................................................AAACTCGAAATAATTTTATTGAAATTAT............................................................................................. 28 0 20 0.05 1 1 0 0 0
.....................................................................................TGAAATCAGTCGATCATACCATGTTT............................................................................................................................................ 26 1 20 0.05 1 1 0 0 0
..............................................................................................................................................................TATAGGTGGTTAAACAATATT........................................................................ 21 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

CTTTAGAGTCTAAAAGATGTAATTAAAAACCAGAAGATGCTAAAAAAAGGTTTGTAAAAGGGTACCTTCTAAAAATAAAAGAATAACTTTAGTCATCTAGTATGGTACAAAATTAAAACCTAAATTCCTTTTTGAGCTTTATTAAAATAACTTTAATAATATCCACCAATTTGTTATAAAAGAAGATAAGATAATAATATCCACCACCACCTTTGGTGTATAAGTTGTCGTCGTCACCCTTTTGTCTTTGG
*********************************************************************************************************....((..((..((((((...................))))))..))...............))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
..........................................................................................................................................................................................................ACCACCACCTTTCGTATA............................... 18 2 12 0.08 1 1 0 0
..........................................................................................................................AATTCCTTTTTGAGCTTTATT............................................................................................................ 21 0 20 0.05 1 0 0 1
................................................................................................................................................................ATCCACCAATTTGTTATAAA....................................................................... 20 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13016:5321-5571 + dan_1088 GAAAT-CTCAGATTTTCTA--CATTA----ATTTT----TGGTCTTCTACGATT----TTTTTCCAAACATTTTCCCATGGAAG-ATTTTTATT-TTCTTATTGAAATCAGTAGATCATACCATGTTTTAATTTTGGATTTAAGGAAAAACTCGAAATAA--TTTTATTGAAATTATTATAGGTGGTTAAACAATATTTT-CTTCTATTCTATTATTATAGGTGGTG---------------GTGGAAACCACATATTCAACAGCAGCAGTGGGAAAACAGAAACC
droBip1 scf7180000393983:30191-30377 + GAAAT-CTCAGATTTTATC--CATT--------TATTTTT--TA--TTTTATTA--T-TTTTCCCAAGCATTTTCCAATGGAACAATTTTTATTTTATTTATTGAAATAAGAAAATTATATGATGTTTTAATTTTGGATTTAAAAAAGAGCACTAAATAA--TTTTATTGAATTTATTAAAGTTCA-------CTATTTT-TGTCAATTATATTA-----------------------------------------------------------------------
droKik1 scf7180000301725:88388-88638 + GAAACTCCCAAAA-TTTTCAACATT--------TCTGTTA--TG----AAAAAACAATTCTGAGAATTAAATCTTCCATGGGACTAATTTTAAA-TTTTCATTGAA-TCTATTGCTCATTGTATTCTTTAATTTCGGTTTAAAGCGTTTTCATGAGGACA--TTTTATTGGATTTATTAAACGAATAAAACCGATTTTTTGGTTTTATTATCTACTACTATTTGCTGTCAAATTTCAAATAAGTCAAGGCAACCTATTAAATAGTAGTAG----------------
droFic1 scf7180000453161:19617-19701 + AAATCAT--AGAATTTTTA--GATTAAAAA-TTTT----TTAATTTCTTTATTT----TTTTAATAAAAATTTTTTTATGTAAA-ATTTTGTTT-TACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------
droEle1 scf7180000490980:32075-32127 + TTTAATT------------------------------------------------------------------------------------------------------------------------------ATGGATTTTATAAAATATAAGAGATGA--TTTTATTAAAATTTTTTTA---------------------------------------------------------------------------------------------------------
droRho1 scf7180000771874:4877-4934 + ATTTTTTTT-------------GTTA----ATTTG----TTGCCATTTTTGTTG----TTTTCCCAGGGACTTTCCCATGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302156:44158-44221 + TTTCATT--A-------------------------------------------------------------------------------------------TTATAGTTAAGAAATTAC----------AATTTTTGTTTTAAATAAAAATTTGATATAA--TTTTAT-----------------------------------------------------------------------------------------------------T----------------
droTak1 scf7180000415390:59861-60069 + GAAAATCTCAAAA-TTGTAGAGATT--------TTTCTGA--TA----TAAAAACAATTCTGAGGATTAAATCTTGAATGGAAGTAATTTTAAC-TATTCATTGTA-TCTATTGTTCATTGTATGCTTTAATTTCGGTTTAAAGCGTTTTCATGAGAATATTTTTTATTGGATTTATTATACTAATAAAACCGATTTTTT-ATTTCATTATCTACTCCTAAATGTTG-----------------------------------------------------------
droEug1 scf7180000408855:1876-1951 - GAAACTCTCAT--ATCCTA--AATTTATA-------------------CCAGTG-----TTTTTCCATCATTTTTCTAAGTTTG-ATTGTCATT-TATTTATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------
droYak3 v2_chrUn_1394:41776-41855 - TACTT--------------------------------------------------------------------------------------------------------------------------------TTAGATCTAAGGAAATGTACTGAAAGG--AAATTTCGATAGTAGTTTAAGTAAATGAAGGATATTTT-TTTTTAGTT-----------------------------------------------------------T----------------
droWil2 scf2_1100000004968:455665-455748 + ATGTAGT--A------------------------------------------------------------------------------------------------------------------------TTTTTAGTTTTAAAGAAAGACACAAGCAGG--TCTTTTCAGTTTGAGTATGGTTTATTGAATAATTCTTA-ATTCTAT-------------------------------------------------------------T----------------
droVir3 scaffold_12575:1437-1522 + ATTTTTT--A----C-------TCT-----ATATT----TTACTAGAATTTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACCAGTGGCTGGTTTCTTCCTTCTACTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_3999:1396-1470 + TTTTTTAT--------------TTTA----ATTTT----TTTTTTTTAATATTT----TTTTTTTAATTTTCTTTTAACATAAA-TTTTTTTTT-TAATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAAAT-CTCAGATTTTCTA--CATTA----ATTTT----TGGTCTTCTACGATT----TTTTTCCAAACATTTTCCCATGGAAG-ATTTTTATT-TTCTTATTGAAATCAGTAGATCATACCATGTTTTAATTTTGGATTTAAGGAAAAACTCGAAATAA--TTTTATTGAAATTATTATAGGTGGTTAAACAATATTTT-CTTCTATTCTATTATTATAGGTGGTG---------------GTGGAAACCACATATTCAACAGCAGCAGTGGGAAAACAGAAACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................TATTGAAATCAGTAGATCATA......................................................................................................................................................................21200.204000004
...........................................................................................................TCAGTAGATCATACCATGTTTTAAT..........................................................................................................................................................25200.153300000
......................................................................................................TGAAATCAGTAGATCATACCATGTTT..............................................................................................................................................................26200.102200000
...........................................................TTTTCCAAACATTTTCCCATGGAAG-ATTT.....................................................................................................................................................................................................29200.102020000
..............................................................TCCAAACATTTTCCCATGGAAG-ATTT.....................................................................................................................................................................................................26200.102020000
..........................................................................................................ATCAGTAGATCATACCATGT................................................................................................................................................................20200.102200000
.............................................................................................................AGTAGATCATACCATGTTTTA............................................................................................................................................................21200.102200000
..........................................................................................................................................TTTAAGGAAAAACTCGAAATAA--TTT.........................................................................................................................25200.051100000
....................................................................................................................................TTTGGATTTAAGGAAAAACTCGAAA.................................................................................................................................25200.051010000
..............................................................TCCAAACATTTTCCCATGGAAG-ATC......................................................................................................................................................................................................25200.051010000
..............................................................TCCAAACATTTTCCCATGGAAG-ATT......................................................................................................................................................................................................25200.051010000
........................................................................................................AAATCAGTAGATCATACCATGT................................................................................................................................................................22200.051100000
...................................................................................................................................................AAACTCGAAATAA--TTTTATTGAAAT................................................................................................................25200.051010000
.......................................................................................................GAAATCAGTAGATCATACCATG.................................................................................................................................................................22200.051100000
..........................................................................................................ATCAGTAGATCATACCATGTTTTA............................................................................................................................................................24200.051100000
........................................................................................................................................................................TGAAATTATTATAGGTGGTTAAA...............................................................................................23200.051010000
..........................................................TTTTTCCAAACATTTTCCCATGGAAG-A........................................................................................................................................................................................................27200.051010000
...........................................................TTTTCCAAACATTTTCCCATGGAAG-ATT......................................................................................................................................................................................................28200.051010000
.......................................................................................................GAAATCAGTAGATCATACCATGTTC..............................................................................................................................................................25200.051010000
...................................................................................................................................................AAACTCGAAATAA--TTTTATTGAAATTAT.............................................................................................................28200.051010000
.................................................................................................................................................................................TATAGGTGGTTAAACAATATT........................................................................................21200.051100000
droBip1
GAAAT-CTCAGATTTTATC--CATT--------TATTTTT--TA--TTTTATTA--T-TTTTCCCAAGCATTTTCCAATGGAACAATTTTTATTTTATTTATTGAAATAAGAAAATTATATGATGTTTTAATTTTGGATTTAAAAAAGAGCACTAAATAA--TTTTATTGAATTTATTAAAGTTCA-------CTATTTT-TGTCAATTATATTA-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GAAACTCCCAAAA-TTTTCAACATT--------TCTGTTA--TG----AAAAAACAATTCTGAGAATTAAATCTTCCATGGGACTAATTTTAAA-TTTTCATTGAA-TCTATTGCTCATTGTATTCTTTAATTTCGGTTTAAAGCGTTTTCATGAGGACA--TTTTATTGGATTTATTAAACGAATAAAACCGATTTTTTGGTTTTATTATCTACTACTATTTGCTGTCAAATTTCAAATAAGTCAAGGCAACCTATTAAATAGTAGTAG----------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAATCAT--AGAATTTTTA--GATTAAAAA-TTTT----TTAATTTCTTTATTT----TTTTAATAAAAATTTTTTTATGTAAA-ATTTTGTTT-TACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTAATT------------------------------------------------------------------------------------------------------------------------------ATGGATTTTATAAAATATAAGAGATGA--TTTTATTAAAATTTTTTTA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTTTTTTT-------------GTTA----ATTTG----TTGCCATTTTTGTTG----TTTTCCCAGGGACTTTCCCATGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTTCATT--A-------------------------------------------------------------------------------------------TTATAGTTAAGAAATTAC----------AATTTTTGTTTTAAATAAAAATTTGATATAA--TTTTAT-----------------------------------------------------------------------------------------------------T----------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAAAATCTCAAAA-TTGTAGAGATT--------TTTCTGA--TA----TAAAAACAATTCTGAGGATTAAATCTTGAATGGAAGTAATTTTAAC-TATTCATTGTA-TCTATTGTTCATTGTATGCTTTAATTTCGGTTTAAAGCGTTTTCATGAGAATATTTTTTATTGGATTTATTATACTAATAAAACCGATTTTTT-ATTTCATTATCTACTCCTAAATGTTG-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GAAACTCTCAT--ATCCTA--AATTTATA-------------------CCAGTG-----TTTTTCCATCATTTTTCTAAGTTTG-ATTGTCATT-TATTTATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------SizeHit CountTotal NormTotal
No Reads
droYak3
TACTT--------------------------------------------------------------------------------------------------------------------------------TTAGATCTAAGGAAATGTACTGAAAGG--AAATTTCGATAGTAGTTTAAGTAAATGAAGGATATTTT-TTTTTAGTT-----------------------------------------------------------T----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droWil2
ATGTAGT--A------------------------------------------------------------------------------------------------------------------------TTTTTAGTTTTAAAGAAAGACACAAGCAGG--TCTTTTCAGTTTGAGTATGGTTTATTGAATAATTCTTA-ATTCTAT-------------------------------------------------------------T----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................TGAGTATGGTTTATTGAATAATTCT........................................................................................25201.2525030220
.....................................................................................................................................................................TTTCAGTTTGAGTATGGTTTATTGAA...............................................................................................26200.45904050
....................................................................................................................................TTTAGTTTTAAAGAAAGACACA....................................................................................................................................2230.33100010
.....................................................................................................................................................................TTTCAGTTTGAGTATGGTTTATTGA................................................................................................25200.30601050
..........................................................................................................................................................AGCAGG--TCTTTTCAGTTTGAGTATGGT.......................................................................................................27200.10200020
............................................................................................................................................................................TTGAGTATGGTTTATTGAATAATTCT........................................................................................26200.10200020
....................................................................................................................................................................TTTTCAGTTTGAGTATGGTT......................................................................................................20200.05100010
..........................................................................................................................................................AGCAGG--TCTTTTCAGTTTGAGTATG.........................................................................................................25200.05100010
..................................................................................................................................................................TCTTTTCAGTTTGAGTATGGTTTATTG.................................................................................................27200.05101000
...........................................................................................................................................................................TTTGAGTATGGTTTATTGAATAATT..........................................................................................25200.05100010
.............................................................................................................................................................................TGAGTATGGTTTATTGAATAATTCTTA-.....................................................................................27200.05100010
....................................................................................................................................................GACACAAGCAGG--TCTTTTCAGTTTGA..............................................................................................................26200.05101000
.............................................................................................................................................................................TGAGTATGGTTTATTGAATAATTC.........................................................................................24200.05100010
..............................................................................................................................................................................GAGTATGGTTTATTGAATAATTCT........................................................................................24200.05101000
......................................................................................................................................................................TTCAGTTTGAGTATGGTTTATTGA................................................................................................24200.05101000
..............................................................................................................................................................GG--TCTTTTCAGTTTGAGTATGGTTTA....................................................................................................26200.05100010
droVir3
ATTTTTT--A----C-------TCT-----ATATT----TTACTAGAATTTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACCAGTGGCTGGTTTCTTCCTTCTACTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................TTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAA....................................................................................................................................................................................27200.85170000000000000000000000000101203000010000000000000000000000000000
......................................................................................................TAAAACCAGTGGCTGGTTTCTTCCTTC.............................................................................................................................................................27200.65130011100000000000000000000100000000000000000000000000000000000000
.................................................TTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAA.....................................................................................................................................................................................26200.408001000000000000000000000021300000000100000000000000000000000000
.................................................TTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAA...................................................................................................................................................................................28200.357000000000000000000000000100400000001100000000000000000000000000
....................................................TG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACC.................................................................................................................................................................................27200.357000000000000000000000000000401010010000000000000000000000000000
..................................................TTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAA....................................................................................................................................................................................26200.306000000000000000000000000001200000000120000000000000000000000000
.................................................TTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTA......................................................................................................................................................................................25200.255004000000000000000000000000000000000100000000000000000000000000
....................................................TG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACCA................................................................................................................................................................................28200.204000000000000000000000000000300010000000000000000000000000000000
...................................................TTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAAC..................................................................................................................................................................................27200.153000000000000000000000000001000000000110000000000000000000000000
......................................................................................................TAAAACCAGTGGCTGGTTTCTTCCTT..............................................................................................................................................................26200.153003000000000000000000000000000000000000000000000000000000000000
................................................................................................TCTTTTTAAAACCAGTGGCTGGTT......................................................................................................................................................................24200.102000000000000000000000000101000000000000000000000000000000000000
.................................................................................................CTTTTTAAAACCAGTGGCTGG........................................................................................................................................................................21200.102000000000000000000000000000000000000002000000000000000000000000
.......................................................................................................AAAACCAGTGGCTGGTTTCTTCCTTC.............................................................................................................................................................26200.102002000000000000000000000000000000000000000000000000000000000000
................................................TTTTTG----ATCGTT-------------------------TTGTT-TTCTTTT........................................................................................................................................................................................24200.102000000000000000000000000001000000010000000000000000000000000000
..................................................TTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAAC..................................................................................................................................................................................28200.102000000000000000000000000000100000001000000000000000000000000000
...................................................TTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACCA................................................................................................................................................................................29200.102000000000000000000000000010100000000000000000000000000000000000
..........................................................................................TGTT-TTCTTTTTAAAACCAGTGGCT..........................................................................................................................................................................25200.102000000000000000000000000000000000000101000000000000000000000000
..................................................TTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAA...................................................................................................................................................................................27200.102000000000000000000000000000000000002000000000000000000000000000
......................................................................................................TAAAACCAGTGGCTGGTTTCTTCCTTCT............................................................................................................................................................28200.102000000000000000000000000000000000000000000000000000000000000002
................................................TTTTTG----ATCGTT-------------------------TTGTT-TTCTTTTT.......................................................................................................................................................................................25200.102001000000000000000000000000000000010000000000000000000000000000
................................................TTTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAA....................................................................................................................................................................................28200.051000000000000000000000000000000010000000000000000000000000000000
...................................................TTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACC.................................................................................................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
..................................................TTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACC.................................................................................................................................................................................29200.051000000000000000000000000000000000000100000000000000000000000000
.................................................TTTTG----ATCGTT-------------------------TTGTT-TTCTTTTCC......................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................T-------------------------TTGTT-TTCTTTTTAAAACCAGTGGC...........................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
...................................................TTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAA....................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
.................................................TTTTG----ATCGTT-------------------------TTGTT-TTCT...........................................................................................................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................TT-------------------------TTGTT-TTCTTTTTAAAACCAGTGGC...........................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
...............................................ATTTTTG----ATCGTT-------------------------TTGTT-T..............................................................................................................................................................................................19200.051000010000000000000000000000000000000000000000000000000000000000
............................................................................................TT-TTCTTTTTAAAACCAGTGGCTGGT.......................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................TCTTTTTAAAACCAGTGGCTGGTTT.....................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
....................................................TG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAA...................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
..................................................TTTG----ATCGTT-------------------------TTGTT-TTCTTTTTA......................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
.........................................................................................TTGTT-TTCTTTTTAAAACCA................................................................................................................................................................................20200.051000000000000000000000000000000001000000000000000000000000000000
......................................................................................................TAAAACCAGTGGCTGGTTTC....................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000001
................................................................................................TCTTTTTAAAACCAGTGGCTG.........................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
.........................................................................................TTGTT-TTCTTTTTAAAACCAGTGGC...........................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
................................................TTTTTG----ATCGTT-------------------------TTGTT-TTCTTTTTAA.....................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
.....................................................G----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACCAG...............................................................................................................................................................................28200.051000000000000000000000000000000001000000000000000000000000000000
.....TT--A----C-------TCT-----ATATT----TTAC...................................................................................................................................................................................................................................................16200.051000000000000000000000000000000000000000000000010000000000000000
.............................................................................................T-TTCTTTTTAAAACCAGTGGCTGG........................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
....................................................TG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAACCAG...............................................................................................................................................................................29200.051000000000000000000000000000100000000000000000000000000000000000
...................................................TTG----ATCGTT-------------------------TTGTT-TTCTTTTTAAAA...................................................................................................................................................................................26200.051000000000000010000000000000000000000000000000000000000000000000
droMoj3
TTTTTTAT--------------TTTA----ATTTT----TTTTTTTTAATATTT----TTTTTTTAATTTTCTTTTAACATAAA-TTTTTTTTT-TAATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 12:22 AM