ID:

dan_1085

 Coordinate:

scaffold_13010:479126-479276 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.8 -17.8

Flybase annnotation

CDS [Dana\GF19044-cds]; exon [dana_GLEANR_20756:2]; intron [Dana\GF19044-in]

Repeatable elements

NameClassFamilyStrand
Hoana1DNAhAT-hobo-
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_253:454-478 +
  2. scaffold_1915:919-943 +
  3. scaffold_12905:88091-88115 -
  4. scaffold_12944:81480-81504 +
  5. scaffold_12966:125865-125889 +
  6. scaffold_12984:497922-497946 +
  7. dan_1085  scaffold_13010:479193-479217 +
  8. scaffold_13082:2956099-2956123 +
  9. scaffold_13099:2525653-2525677 +
  10. scaffold_13137:137202-137226 +
  11. scaffold_13228:440722-440746 +
  12. scaffold_13228:444620-444644 +
  13. scaffold_13239:74035-74059 -
  14. scaffold_13239:159461-159485 -
  15. scaffold_13250:1082724-1082748 -
  16. scaffold_13335:2633840-2633864 -
  17. scaffold_13339:30511-30535 -
  18. scaffold_13417:4668199-4668223 +
  19. dan_3464  scaffold_13417:5943501-5943525 +
  20. dan_3488  scaffold_13417:5959976-5960000 +
star
  1. scaffold_8405:79-97 +
  2. scaffold_9383:1852-1870 -
  3. scaffold_12911:1438486-1438504 +
  4. scaffold_12947:245796-245814 +
  5. scaffold_12948:511244-511262 +
  6. dan_1085  scaffold_13010:479131-479149 +
  7. scaffold_13034:534036-534054 +
  8. scaffold_13082:3547217-3547235 +
  9. scaffold_13099:761914-761932 +
  10. scaffold_13099:851207-851225 +
  11. dan_1256  scaffold_13099:2672771-2672789 +
  12. scaffold_13137:801550-801568 -
  13. scaffold_13228:458951-458969 +
  14. scaffold_13228:773172-773190 +
  15. scaffold_13250:1937564-1937582 +
  16. scaffold_13250:1997482-1997500 +
  17. scaffold_13333:638332-638350 -
  18. scaffold_13335:2935655-2935673 +
  19. scaffold_13340:17499954-17499972 -
  20. scaffold_13417:3703540-3703558 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTTATGTTAGAATAATTTATTTGTTCTGCCATATTTCATAAGGATCGGACGACTATATCCGATAGCCGCCATATAATTCAACAATCGGAATTGGCACAACCTTAACTGCAAGGGTATATCAACTTCGGATCCGCCCGAAGTTAGCTTTCCTTTCATGTTTATTTTAAATTGAATTTTAAATTATTTAAAATTTTTTTTAGATTTTCCAGCAATGTGTTTTGCCTCCACAAGGTGTGCTACAGTTGAGCCT
*******************************************************((((((....((.((((....((((........))))))))............))..))))))....(((((((......)))))))************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
.....................................................................................................................TATCAACTTCGGATCCGCCCGAAGT............................................................................................................. 25 0 20 0.10 2 2 0 0
...........................................................................................................TGCAAGGGTATATCAACTTCGGATCC...................................................................................................................... 26 0 20 0.10 2 2 0 0
...........................................................................................................TGCAAGGGTATATCAACTTCGG.......................................................................................................................... 22 0 20 0.10 2 0 2 0
..................................................................................................................GTATATCAACTTCGGATCCGCCC.................................................................................................................. 23 0 15 0.07 1 1 0 0
...................................................................................................................TATATCAACTTCGGATCCGCC................................................................................................................... 21 0 18 0.06 1 0 0 1
...................................................................................................................TATATCAACTTCGGATCCGCCCGA................................................................................................................ 24 0 18 0.06 1 0 1 0
....................................................................................................................ATATCAACTTCGGATCCGCCC.................................................................................................................. 21 0 19 0.05 1 0 0 1
......................................................................................................TTAACTGCAAGGGTATATCAACT.............................................................................................................................. 23 0 20 0.05 1 1 0 0
.....................................................................................................................TATCAACTTCGGATCCGTCCGAAGT............................................................................................................. 25 1 20 0.05 1 1 0 0
...................................................................................................................TATATCAACTTCGGATCC...................................................................................................................... 18 0 20 0.05 1 1 0 0
..........................................................................................................CTGCAAGGGTATATCAACTTC............................................................................................................................ 21 0 20 0.05 1 0 0 1
..................................................................................................................................TCCGCCCGAAGTTAGCTTTCCTT.................................................................................................. 23 0 20 0.05 1 0 1 0
........................................................................................................AACTGCAAGGGTATATCAACTTC............................................................................................................................ 23 0 20 0.05 1 1 0 0
...........................................................................................................TGCAAGGGTATATCAACTTCGGATC....................................................................................................................... 25 0 20 0.05 1 0 1 0
.................................................................................................................................ATCCGCCCGAAGTTAGCTTTC..................................................................................................... 21 0 20 0.05 1 1 0 0
......................................................................................................................ATCAACTTCGGATCCGCCCGAAGT............................................................................................................. 24 0 20 0.05 1 1 0 0
.......................................................ATATCCGATAGCCGCCATA................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0

Anti-sense strand reads

AGAATACAATCTTATTAAATAAACAAGACGGTATAAAGTATTCCTAGCCTGCTGATATAGGCTATCGGCGGTATATTAAGTTGTTAGCCTTAACCGTGTTGGAATTGACGTTCCCATATAGTTGAAGCCTAGGCGGGCTTCAATCGAAAGGAAAGTACAAATAAAATTTAACTTAAAATTTAATAAATTTTAAAAAAAATCTAAAAGGTCGTTACACAAAACGGAGGTGTTCCACACGATGTCAACTCGGA
*************************************************************************************************************((((((....((.((((....((((........))))))))............))..))))))....(((((((......)))))))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
..........................................................................................................................TGAAGCCTAGGCGGGCTTCAATCGAAAG..................................................................................................... 28 0 20 0.25 5 5 0 0 0
................................................................................................................CCCATATAGTTGAAGCCTAGGCGGGCTT............................................................................................................... 28 0 15 0.20 3 2 1 0 0
............................................................................................................................AAGCCTAGGCGGGCTTCAATCGAAA...................................................................................................... 25 0 20 0.20 4 0 4 0 0
..........................................................................................................................TGAAGCCTAGGCGGGCTTCAATCGAAA...................................................................................................... 27 0 20 0.15 3 2 1 0 0
.............................................................................................................................AGCCTAGGCGGGCTTCAATCGAAAG..................................................................................................... 25 0 20 0.15 3 0 2 0 1
..........................................................................................................................TGAAGCCTAGGCGGGCTTCAATCGA........................................................................................................ 25 0 20 0.15 3 3 0 0 0
.................................................................................................................CCATATAGTTGAAGCCTAGGCGGGCTT............................................................................................................... 27 0 15 0.13 2 1 1 0 0
................................................................................................................CCCATATAGTTGAAGCCTAGGCG.................................................................................................................... 23 0 16 0.13 2 0 0 2 0
......................................................................................................................................................................................................................................ACCACACGATGTCGACTAGG. 20 3 8 0.13 1 1 0 0 0
............................................................................................................................AAGCCTAGGCGGGCTTCAATCGAAAG..................................................................................................... 26 0 20 0.10 2 2 0 0 0
.................................................................................................................CCATATAGTTGAAGCCTAGGCGGG.................................................................................................................. 24 0 15 0.07 1 1 0 0 0
...............................................................................................................TCCCATATAGTTGAAGCCTAGGCGGGC................................................................................................................. 27 0 15 0.07 1 0 1 0 0
................................................................................................................CCCATATAGTTGAAGCCTAGGCGGGC................................................................................................................. 26 0 15 0.07 1 0 1 0 0
.................................................................................................................CCATATAGTTGAAGCCTAGGCGG................................................................................................................... 23 0 15 0.07 1 1 0 0 0
................................................................................................................CCCATATAGTTGAAGCCTAGGCGGGCT................................................................................................................ 27 0 15 0.07 1 0 1 0 0
...............................................................................................................TCCCATATAGTTGAAGCCTAGGCG.................................................................................................................... 24 0 16 0.06 1 0 0 1 0
..............................................................................................................TTCCCATATAGTTGAAGCCTAGGCG.................................................................................................................... 25 0 16 0.06 1 0 0 1 0
.............................................................................................................GTTCCCATATAGTTGAAGCCTAGGCG.................................................................................................................... 26 0 16 0.06 1 0 1 0 0
.......................................................................................................................................................................................................................................ACACACGATGTCGACTAGG. 19 3 17 0.06 1 1 0 0 0
...................................................................................................................ATATAGTTGAAGCCTAGGCGGGCT................................................................................................................ 24 0 18 0.06 1 0 1 0 0
..............................................................................................................................GCCTAGGCGGGCTTCAATCGAAAG..................................................................................................... 24 0 20 0.05 1 1 0 0 0
............................................................................................................................AAGCCTAGGCGGGCTTCAATCGAA....................................................................................................... 24 0 20 0.05 1 1 0 0 0
................................................................................................................................CTAGGCGGGCTTCAATCGAAGG..................................................................................................... 22 1 20 0.05 1 1 0 0 0
.............................................................................................................................AGCCTAGGCGGGCTTCAATCGAAA...................................................................................................... 24 0 20 0.05 1 0 1 0 0
..........................................................................................................................CGAAGCCTAGGCGGGCTTCAATCGA........................................................................................................ 25 1 20 0.05 1 1 0 0 0
..........................................................................................................................CGAAGCCTAGGCGGGCTTCAATCGAAGG..................................................................................................... 28 2 20 0.05 1 1 0 0 0
...............................................................................................................................CCTAGGCGGGCTTCAATCGAAATG.................................................................................................... 24 1 20 0.05 1 1 0 0 0
...........................................................................................................................GAAGCCTAGGCGGGCTTCAATCGAAAG..................................................................................................... 27 0 20 0.05 1 1 0 0 0
................................................................................................................................CTAGGCGGGCTTCAATCGAAA...................................................................................................... 21 0 20 0.05 1 0 1 0 0
................................................................................................................................CTAGGCGGGCTTCAATCGAAAGG.................................................................................................... 23 0 20 0.05 1 0 1 0 0
.................................................................................................................................TAGGCGGGCTTCAATCGAAAG..................................................................................................... 21 0 20 0.05 1 0 1 0 0
.........................................................................................................TGACGTTCCCATATAGTTGAAGCCT......................................................................................................................... 25 0 20 0.05 1 1 0 0 0
................................................................................................................................CTAGGCGGGCTTCAATCGA........................................................................................................ 19 0 20 0.05 1 1 0 0 0
..........................................................................................................................TGAAGCCTAGGCGGGCTTCAATCCAA....................................................................................................... 26 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13010:479076-479326 + dan_1085 TCTTATGTTAGAATA--ATTTATTT----------------------------------G--------------------------------------------TTCTGCCATAT-TTCAT-----------------------------------------------------------------------------------------------------------AAGGATCGGACGACTATATCCGATAGCCGCCATATAATTCAACAATCGGAATTGGC----------------ACAA------CCTTAACTGCAAGGGTATATCAACTTCGGATCCGCCCGAAGTTAGCTTTC--CTTTCATG-TTTATTTT---------AAATT---GAATTTTAAATTATTTAAAAT-TTTT-T------TTAGATTTTCCAGCA-----------------------ATGT--GTTTTGCCT--------------------------------------------------------CCACAAGGT-G--TGCTACAGTTGAGCCT
droBip1 scf7180000393751:28869-29085 - TTTTATATTATAATAAATTGG-GTT----------------------------------G--------------------------------------------TATTATCATATACTCAT-----------------------------------------------------------------------------------------------------------AAGGATCGGCCAACTATATTCGATGTTTGCGATATA-------------------------------TA--TCCGG------TTTTAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTC--CTTTTTTG-TTTT---------TTAATCTT--TT----TA-------AATTTGAA-T-CTTTTCGTTCC-----ACTTT-GCC-----------------------GTAG--ATTTTGCTT------------------------------------------------------------------G--GACTAAAATTTTTCTT
droKik1 scf7180000302694:166748-166981 - TATAAAGCTGGGAAT--GTATAA----------------------------------CTGTAACTGTCAAACTGT-AA-----------------------------------AC-ATAAT-AGGTATAGGTAAAATGTTATAAAACTCTGTTTTCGGCATTATA---------------------------------ATTTATGA------------------------------------------------TATAAATAT-------------------------------------GAAA------ACCAATCTGCAAGGGTATACAAACTTCGGCG--TGCCGAAGTTAGCT-TC--CTTTCTTG-TTTTTATT---------TCAAA---TTATTC----------AAA-A-GTTA-A------TTAGC----------------------TTTTA-------TC------------GGAACAATGTTTTT------------------------------------------CCAACTGGT-G--T-------------AC
droFic1 scf7180000453937:54357-54564 + TTTTATCAGA--CAA--GCATGA--------------------------------------------------TTGT-------------------------------T-------------TGA---------------------------ATTAGG---------------------------------------------------------AATTGAATTTTATCAAAATCGGACGACTATATCACATAGCTGTTATATAAA------------------AAAAAGTGTATTTTATCCGACATATTTGATGACTGCAAGGGTATATAAGCTTTGGCT--TGCCGAAGCTAGCT-TC--CTTTCTTG-TTTTTCCA---------TTATT---TA-----------CATACAAA-T---------------------------------------------------------------------------------------------------TTTTCGATCTTTCCTATG-------------------------------G
droEle1 scf7180000486970:21027-21276 - ATCAAATAATTG--------A-GCT------------------------GCAAATCATCATAGCTTCAATGTTTTTAAACATATACGC-------------------------------------------------------------------------------------------------------------------------------------------------------AAGTAAATCATAATTTTAATGTTTTCA------------------AAAATGTTTAATT---CTTG------CAATAGCTGCAAGGGTATATGAACTTCGGCT--TGCCTCAGTTTGCT-TT--CTTTCTTG-TTTT---------CAGTACACT---TA------------------------------------------------GGGGTGCTAGCATTCA-------TC------------TAAGCATGGT-------------TCATTGAAAAATTTTTAGAAGTTTTTTATACCCTTGCAGAGG-G--TATTATAAT------T
droRho1 scf7180000761431:7072-7300 - TTTAAAGTTAGGAA-------------------------------------------------------------------------------------------------------------------------------------------GTTGGTATTTTT------------------------------TAT------------------------------GAGTAT--TAAGAATGCAT-----------CATATGAATAACCGATCCGATTTTGGAGAA--TATAATT--TACAG------AATATTCTGCAAGGGTTTATCTACTTCGGCTCCGCCCGAAGTTTGCTTTC--CTTTTTTG-TTTT---------TTATTCTGT---TATTGC----------ACT-T-A----TTCAT---TTCC----------------------ATTTCTGAAC-CTAG-ATTGTTTTTT--------------------------------------------------------CGACCAGAA-G--TGTTATTGTTAAGCTT
droBia1 scf7180000301518:787688-787956 + AAATAATGTGAA-------------------------------------ACAA---ATTATAGCTTTGAGGCTTTTTGACATATTATCTTATAATATTGGAATATACATTTTTATATTTTTTAGA---------------------------ATTT-------CG---------------------------------AC-----------------TT-------------------CAATTTAATAAAATG-------------------------------------ATTGATT---ATTT-----TTTATAACTGCAAGGGTATACAAACTTCGGCT--TGCCGAAGTTAACT-TC--CTTTCCTG-TTCT---------TTATATAGT-------------------------------------------TTTATAGTAAGGAATATTA-------------------------TAT-AATTATAT-----AATATATAATTATTATAATATTTATGGAGGTGTTTAGTCT--GCACGCAG--------------------T
droTak1 scf7180000415287:267205-267429 + CAAATAT-AAGAAA---ATTC-----------------------------------ATTGTAACTGTAGGA---------------------------------------------------------------------------------AGTAGGCGTTTTA---------------------------------ATTCTTGACAACTTAAAAACAAAA--------------------------------------------------------------------TTTAATT---ACAA------ACGGAACTACAAGGGTATATAAGCTTCGGCT--GGCCGAAGATAGCT-TC--CTTTCTTG-TTTTTCTTTGATA----TAA-ATAT-----------TTTAGTGAAATT-TTCTTCCTTTTTAGATT--AAAGCC-----------------------ATGAGATCGTTGTTG--------------------------------------------------------CTGCCAGAAGGGGGTTT---------ACA
droEug1 scf7180000406964:125829-125900 + TAAAATTTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-A-CT-T------TTAGATTTTCCGGCG-----------------------ATGT--GTTTTGCTT--------------------------------------------------------CCACTCGAT-G--TGCTACTGTAGAGCCC
dm3 chr4:175724-175800 - TTTCAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATA-ACTC-T------TCAGATTTTCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGCCT
droSim2 4:123913-123988 - TTCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATA-ATTC-T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGCCC
droSec2 scaffold_52:117620-117695 - TTCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATA-ATTC-T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGCCC
droYak3 4:149154-149252 - GTTAAATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTCG-CACTTCCTTAAAA--------T---AAA-----------TCTTATA-ATTT-T------TTAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACTCGAT-G--TGCCACTGTTGAGCCC
droEre2 scaffold_4512:1152062-1152119 + TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACTCGAT-G--TGCCACTGTTGAGCCT
dp5 Unknown_group_24:2717-2786 - TTTAGATTAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CT-T------TCAGACTTTCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACACGTT-G--CGCTACGGTTGAACCT
droPer2 scaffold_51:113478-113517 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACACGTT-G--CGCTACGGTTGAACCT
droWil2 scf2_1100000004585:401582-401801 + TTTAATATTAGAGA---GTTT-----------------------------------ATTACGCCTATAAACGACTGT-------------------------------GCCAAAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAACTATACCATATAGCTCCCATAGG----------------------------------------------AAAAACTTGCAAGGGTATACAAACTTTGACG-CGGTCGAAGTTAGCC-CCGGCCCTC-TGGTTTTTTT----------ATAATCTT----TG-------AATTGGAT-T-TTCTTGGCTCTCAAAAA---ATTTC----------------A----TTAAGA--AA----------------TTTGT------------------------------------------TCAGTTA-------TT---------TGTT
droVir3 scaffold_11896:4557-4818 - TCGTATGAAAATACA--TTTTGATTATCAAGATATCTTGACCAAACTCGGCA-----------------------------------------------------------------------------------------------------TTTAGTATTTTCCCGGTACTTATAAGATATGGGGCAAGCCACTAT------------------------------GAGCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCTGCAAGGGTATTAGATCTTTGGCG--TGCCGAAGATAGCCCTT--CTTTCTCG-TTTTAACT---------TAATT---TTATTT-------TATTTG---T-CTTTATATTGC-----CCTTTGGCT-----------------------ATAT--GTCTTTTCT----------------------------------------------TTTTATACCCTTCCAGAGG-G--TATTATAATTGTGTCG
droMoj3 scaffold_6498:1649966-1650059 + ATTTAAAATTAATTT--ATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-----------TATATTGGAA-TTTT-T------TAAGATTTTCCTGGC-----------------------ATGT--GCTTTGCAT--------------------------------------------------------CGACTCGGT-G--TGCCACTGTTGAGCCC
droGri2 scaffold_15081:3780591-3780767 + TTGAAAATAAAAAT---ATTC------------------AACGTACGCAACAT---TCCATAGTTTTT----------------------------------------------------T----TTTAGCTATAAAG---TGAAACTTAGATGTCGGCAGTTTG---------------------------------AC--------------------------------------------------------------------------------------------------------------TCCTGTCTGCAAGGGTATCTGAACTTCGGCT--TGGCCATGTTAGCCGTT--CTTTCGTG-ATTT---------CTATATTGC-------------------------------------------T-----------------------------------------------GATCAATATTACT------------------------------------------TCAA-------------------GGTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCTTATGTTAGAATA--ATTTATTT----------------------------------G--------------------------------------------TTCTGCCATAT-TTCAT-----------------------------------------------------------------------------------------------------------AAGGATCGGACGACTATATCCGATAGCCGCCATATAATTCAACAATCGGAATTGGC----------------ACAA------CCTTAACTGCAAGGGTATATCAACTTCGGATCCGCCCGAAGTTAGCTTTC--CTTTCATG-TTTATTTT---------AAATT---GAATTTTAAATTATTTAAAAT-TTTT-T------TTAGATTTTCCAGCA-----------------------ATGT--GTTTTGCCT--------------------------------------------------------CCACAAGGT-G--TGCTACAGTTGAGCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................TATCAACTTCGGATCCGCCCGAAGT........................................................................................................................................................................................................................25200.102020000
.............................................................................................................................................................................................................................................................................................................................TGCAAGGGTATATCAACTTCGGATCC.................................................................................................................................................................................................................................26200.102020000
.............................................................................................................................................................................................................................................................................................................................TGCAAGGGTATATCAACTTCGG.....................................................................................................................................................................................................................................22200.102200000
....................................................................................................................................................................................................................................................................................................................................GTATATCAACTTCGGATCCGCCC.............................................................................................................................................................................................................................23150.071010000
.....................................................................................................................................................................................................................................................................................................................................TATATCAACTTCGGATCCGCC..............................................................................................................................................................................................................................21180.061000001
.....................................................................................................................................................................................................................................................................................................................................TATATCAACTTCGGATCCGCCCGA...........................................................................................................................................................................................................................24180.061100000
......................................................................................................................................................................................................................................................................................................................................ATATCAACTTCGGATCCGCCC.............................................................................................................................................................................................................................21190.051000001
........................................................................................................................................................................................................................................................................................................................TTAACTGCAAGGGTATATCAACT.........................................................................................................................................................................................................................................23200.051010000
.....................................................................................................................................................................................................................................................................................................................................TATATCAACTTCGGATCC.................................................................................................................................................................................................................................18200.051010000
............................................................................................................................................................................................................................................................................................................................CTGCAAGGGTATATCAACTTC.......................................................................................................................................................................................................................................21200.051000001
....................................................................................................................................................................................................................................................................................................................................................TCCGCCCGAAGTTAGCTTTC--CTT...........................................................................................................................................................................................................23200.051100000
..........................................................................................................................................................................................................................................................................................................................AACTGCAAGGGTATATCAACTTC.......................................................................................................................................................................................................................................23200.051010000
.............................................................................................................................................................................................................................................................................................................................TGCAAGGGTATATCAACTTCGGATC..................................................................................................................................................................................................................................25200.051100000
...................................................................................................................................................................................................................................................................................................................................................ATCCGCCCGAAGTTAGCTTTC--..............................................................................................................................................................................................................21200.051010000
........................................................................................................................................................................................................................................................................................................................................ATCAACTTCGGATCCGCCCGAAGT........................................................................................................................................................................................................................24200.051010000
...................................................................................................................................................................................................................................................ATATCCGATAGCCGCCATA..................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
TTTTATATTATAATAAATTGG-GTT----------------------------------G--------------------------------------------TATTATCATATACTCAT-----------------------------------------------------------------------------------------------------------AAGGATCGGCCAACTATATTCGATGTTTGCGATATA-------------------------------TA--TCCGG------TTTTAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTC--CTTTTTTG-TTTT---------TTAATCTT--TT----TA-------AATTTGAA-T-CTTTTCGTTCC-----ACTTT-GCC-----------------------GTAG--ATTTTGCTT------------------------------------------------------------------G--GACTAAAATTTTTCTTSizeHit CountTotal NormTotal
No Reads
droKik1
TATAAAGCTGGGAAT--GTATAA----------------------------------CTGTAACTGTCAAACTGT-AA-----------------------------------AC-ATAAT-AGGTATAGGTAAAATGTTATAAAACTCTGTTTTCGGCATTATA---------------------------------ATTTATGA------------------------------------------------TATAAATAT-------------------------------------GAAA------ACCAATCTGCAAGGGTATACAAACTTCGGCG--TGCCGAAGTTAGCT-TC--CTTTCTTG-TTTTTATT---------TCAAA---TTATTC----------AAA-A-GTTA-A------TTAGC----------------------TTTTA-------TC------------GGAACAATGTTTTT------------------------------------------CCAACTGGT-G--T-------------ACSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTATCAGA--CAA--GCATGA--------------------------------------------------TTGT-------------------------------T-------------TGA---------------------------ATTAGG---------------------------------------------------------AATTGAATTTTATCAAAATCGGACGACTATATCACATAGCTGTTATATAAA------------------AAAAAGTGTATTTTATCCGACATATTTGATGACTGCAAGGGTATATAAGCTTTGGCT--TGCCGAAGCTAGCT-TC--CTTTCTTG-TTTTTCCA---------TTATT---TA-----------CATACAAA-T---------------------------------------------------------------------------------------------------TTTTCGATCTTTCCTATG-------------------------------GSizeHit CountTotal NormTotal
No Reads
droEle1
ATCAAATAATTG--------A-GCT------------------------GCAAATCATCATAGCTTCAATGTTTTTAAACATATACGC-------------------------------------------------------------------------------------------------------------------------------------------------------AAGTAAATCATAATTTTAATGTTTTCA------------------AAAATGTTTAATT---CTTG------CAATAGCTGCAAGGGTATATGAACTTCGGCT--TGCCTCAGTTTGCT-TT--CTTTCTTG-TTTT---------CAGTACACT---TA------------------------------------------------GGGGTGCTAGCATTCA-------TC------------TAAGCATGGT-------------TCATTGAAAAATTTTTAGAAGTTTTTTATACCCTTGCAGAGG-G--TATTATAAT------TSizeHit CountTotal NormTotal
No Reads
droRho1
TTTAAAGTTAGGAA-------------------------------------------------------------------------------------------------------------------------------------------GTTGGTATTTTT------------------------------TAT------------------------------GAGTAT--TAAGAATGCAT-----------CATATGAATAACCGATCCGATTTTGGAGAA--TATAATT--TACAG------AATATTCTGCAAGGGTTTATCTACTTCGGCTCCGCCCGAAGTTTGCTTTC--CTTTTTTG-TTTT---------TTATTCTGT---TATTGC----------ACT-T-A----TTCAT---TTCC----------------------ATTTCTGAAC-CTAG-ATTGTTTTTT--------------------------------------------------------CGACCAGAA-G--TGTTATTGTTAAGCTTSizeHit CountTotal NormTotal
No Reads
droBia1
AAATAATGTGAA-------------------------------------ACAA---ATTATAGCTTTGAGGCTTTTTGACATATTATCTTATAATATTGGAATATACATTTTTATATTTTTTAGA---------------------------ATTT-------CG---------------------------------AC-----------------TT-------------------CAATTTAATAAAATG-------------------------------------ATTGATT---ATTT-----TTTATAACTGCAAGGGTATACAAACTTCGGCT--TGCCGAAGTTAACT-TC--CTTTCCTG-TTCT---------TTATATAGT-------------------------------------------TTTATAGTAAGGAATATTA-------------------------TAT-AATTATAT-----AATATATAATTATTATAATATTTATGGAGGTGTTTAGTCT--GCACGCAG--------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
CAAATAT-AAGAAA---ATTC-----------------------------------ATTGTAACTGTAGGA---------------------------------------------------------------------------------AGTAGGCGTTTTA---------------------------------ATTCTTGACAACTTAAAAACAAAA--------------------------------------------------------------------TTTAATT---ACAA------ACGGAACTACAAGGGTATATAAGCTTCGGCT--GGCCGAAGATAGCT-TC--CTTTCTTG-TTTTTCTTTGATA----TAA-ATAT-----------TTTAGTGAAATT-TTCTTCCTTTTTAGATT--AAAGCC-----------------------ATGAGATCGTTGTTG--------------------------------------------------------CTGCCAGAAGGGGGTTT---------ACASizeHit CountTotal NormTotal
No Reads
droEug1
TAAAATTTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-A-CT-T------TTAGATTTTCCGGCG-----------------------ATGT--GTTTTGCTT--------------------------------------------------------CCACTCGAT-G--TGCTACTGTAGAGCCCSizeHit CountTotal NormTotal
No Reads
dm3
TTTCAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATA-ACTC-T------TCAGATTTTCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCCGGGA-----------------------ATGT--GCTTTG........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCGAT-G--TGCCACTGT.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAAC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGC..2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCAC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCGGGA-----------------------ATGT--GCTTTG........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACT........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCAC..........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCC............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACT........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATA-ATTC-T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGC.......................................................................................2711.00100000000100000000
droSec2
TTCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATA-ATTC-T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--TGCCACTGTTGAGCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CAACTCGAT-G--T...............2511.0010010
droYak3
GTTAAATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTCG-CACTTCCTTAAAA--------T---AAA-----------TCTTATA-ATTT-T------TTAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACTCGAT-G--TGCCACTGTTGAGCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-T------TCAGATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACTCGAT-G--TGCCACTGTTGAGCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCCGGCA-----------------------ATGT--GC............................................................................................1811.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTT--------------------------------------------------------CTACTCGAT-G--TGCCA...........2111.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACTCGAT-G--T...............2511.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCGGCA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------.............................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCGAT-G--TGCCACTGTTGAGC..2411.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-G--TGCCACTGTTGAGCCT2011.0010000010
dp5
TTTAGATTAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CT-T------TCAGACTTTCCGGGA-----------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACACGTT-G--CGCTACGGTTGAACCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGT--GCTTTGCTT--------------------------------------------------------CTACACGTT-G--CGCTACGGTTGAACCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTT-G--CGCTACGGT.......1911.001100000
droWil2
TTTAATATTAGAGA---GTTT-----------------------------------ATTACGCCTATAAACGACTGT-------------------------------GCCAAAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAACTATACCATATAGCTCCCATAGG----------------------------------------------AAAAACTTGCAAGGGTATACAAACTTTGACG-CGGTCGAAGTTAGCC-CCGGCCCTC-TGGTTTTTTT----------ATAATCTT----TG-------AATTGGAT-T-TTCTTGGCTCTCAAAAA---ATTTC----------------A----TTAAGA--AA----------------TTTGT------------------------------------------TCAGTTA-------TT---------TGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................TGCAAGGGTATACAAACTTTGACG-CGG...............................................................................................................................................................................................................................27201.8036036000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAATCTT----TG-------AATTGGAT-T-TTCTTGGC............................................................................................................................................2621.00200020
.....................................................................................................................TGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAACTATACCATA.............................................................................................................................................................................................................................................................................................................................2730.67200020
................................................................................................................AAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACA........................................................................................................................................................................................................................................................................................................................................2030.67200020
............................................................................T-------------------------------GCCAAAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAA.......................................................................................................................................................................................................................................................................................................................................2630.67200020
.....................................................................................................................................................................................................................................................................................................................................................................................................TAATCTT----TG-------AATTGGAT-T-TTCTTGG.............................................................................................................................................2520.50101000
...........................................................................................................................................................................................................................................................................................................................................................................................................T----TG-------AATTGGAT-T-TTCTTGGC............................................................................................................................................2020.50100010
............................................................................................................................................................................................................................................................AGCTCCCATAGG----------------------------------------------AAAAACT...........................................................................................................................................................................................................................................................1920.50101000
....................................................................................................................................................................................................................................TAAGATCGGACAACTATACCATATAGC.........................................................................................................................................................................................................................................................................................................................2760.50311010
...........................................................................................................................................................................................................................................................................................................................................................................................................T----TG-------AATTGGAT-T-TTCTTGGCT...........................................................................................................................................2120.50101000
..........................................................................TGT-------------------------------GCCAAAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACA........................................................................................................................................................................................................................................................................................................................................2730.33100010
....................................................................................................................................................................................................................................................................TAGG----------------------------------------------AAAAACTTGCAAGGGTACT...............................................................................................................................................................................................................................................2330.33101000
............................................................................T-------------------------------GCCAAAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAACT.....................................................................................................................................................................................................................................................................................................................................2830.33101000
..........................................................................TGT-------------------------------GCCAAAT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGA..........................................................................................................................................................................................................................................................................................................................................2530.33100010
.....................................................................................................................TGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAACTATACCA...............................................................................................................................................................................................................................................................................................................................2530.33101000
.................................................................................................................AT-TTGTT-----------------------------------------------------------------------------------------------------------TAAGATCGGACAA.......................................................................................................................................................................................................................................................................................................................................2030.33101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTCTTGGCTCTCAAAAA---ATTTC----------------A----......................................................................................................2470.29202000
..........................................................TACGCCTATAAACGACTGT-------------------------------GCCAAAT-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.29202000
....................T-----------------------------------ATTACGCCTATAAACGACTGT-------------------------------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.27312000
...........................................................................................................................................................................................................................................................................................................................................................GAAGTTAGCC-CCGGCCCTC-TGGTTT..................................................................................................................................................................................................25200.25505000
......................................................................................................................................................................................................................................AGATCGGACAACTATACCATATAGC.........................................................................................................................................................................................................................................................................................................................2560.17110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTCTCAAAAA---ATTTC----------------A----TTAAG.................................................................................................2560.17100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTCTCAAAAA---ATTTC----------------A----TTAAGA--..............................................................................................2660.17101000
...................................................................................................................................................................................................................................................................................................................................GGTATACAAACTTTGACG-CGGTCGAAG.........................................................................................................................................................................................................................27200.15300030
....................................................................................................................................................................................................................................TAAGATCGGACAACTATACCATATA...........................................................................................................................................................................................................................................................................................................................2570.14101000
....................................................................................................................................................................................................................................TAAGATCGGACAACTATACCAT..............................................................................................................................................................................................................................................................................................................................2270.14100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTCTTGGCTCTCAAAAA---ATTTC----------------A----T.....................................................................................................2570.14101000
........................................................................................................................T-----------------------------------------------------------------------------------------------------------TAAGATCGGACAACTATACCATATAG..........................................................................................................................................................................................................................................................................................................................2770.14100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGCTCTCAAAAA---ATTTC----------------A----T.....................................................................................................2470.14100010
....................................................................................................................................................................................................................................TAAGATCGGACAACTATACCATATAG..........................................................................................................................................................................................................................................................................................................................2670.14100010
.........AGAGA---GTTT-----------------------------------ATTACGCCTATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.13100010
........................................................ATTACGCCTATAAACGACTGT-------------------------------GCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.11101000
..........................................................TACGCCTATAAACGACTGT-------------------------------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09101000
........................................................ATTACGCCTATAAACGACTGT-------------------------------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09101000
...........................................................ACGCCTATAAACGACTGT-------------------------------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.09101000
.............................................................GCCTATAAACGACTGT-------------------------------GCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06101000
...................TT-----------------------------------ATTACGCCTATAAACGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.06101000
....................................................................................................................................................................................................................................................TACCATATAGCTCCCATAGG----------------------------------------------A.................................................................................................................................................................................................................................................................21200.05100010
...................................................................................................................................................................................................................................................................................................................................................CG-CGGTCGAAGTTAGCC-CCGGC.............................................................................................................................................................................................................22200.05100100
.........................................................................................................................................................................................................................................................................................................................AACTTGCAAGGGTATACAAACTTTGA.....................................................................................................................................................................................................................................26200.05101000
.TTAATATTAGAGA---GTTT-----------------------------------ATTACGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
......ATTAGAGA---GTTT-----------------------------------ATTACGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
TCGTATGAAAATACA--TTTTGATTATCAAGATATCTTGACCAAACTCGGCA-----------------------------------------------------------------------------------------------------TTTAGTATTTTCCCGGTACTTATAAGATATGGGGCAAGCCACTAT------------------------------GAGCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCTGCAAGGGTATTAGATCTTTGGCG--TGCCGAAGATAGCCCTT--CTTTCTCG-TTTTAACT---------TAATT---TTATTT-------TATTTG---T-CTTTATATTGC-----CCTTTGGCT-----------------------ATAT--GTCTTTTCT----------------------------------------------TTTTATACCCTTCCAGAGG-G--TATTATAATTGTGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................GCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCTGC........................................................................................................................................................................................................................................................24200.408000000001000000000000000201102010000000000000000000000000000000
.....................................................................................................................................................................................................T------------------------------GAGCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCTGC........................................................................................................................................................................................................................................................27140.213000000010000000000000000000001000010000000000000000000000000000
......................................................................................................................................................................................................................................GCAT--TATGAA--------------------------------------------A--------------AAG------TTGGG.............................................................................................................................................................................................................................................................19200.102000000000000000000000000000002000000000000000000000000000000000
............................................................................................................................................................................................................................................TATGAA--------------------------------------------A--------------AAG------TTGGGTCTGCAA......................................................................................................................................................................................................................................................22200.102000000000000000000000000000001000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTG---T-CTTTATATTGC-----CCTTTGGCT-----------------------ATA.................................................................................................28120.081000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TAT------------------------------GAGCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTC...........................................................................................................................................................................................................................................................26130.081000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATTGC-----CCTTTGGCT-----------------------A...................................................................................................21130.081000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................TAT------------------------------GAGCAT--TATGAA--------------------------------------------A--------------AAG------TTGG..............................................................................................................................................................................................................................................................23140.071000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AA--------------------------------------------A--------------AAG------TTGGGTCTGCAAGGGTAT................................................................................................................................................................................................................................................24150.071000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................T------------------------------GAGCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCT..........................................................................................................................................................................................................................................................25160.061000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-----CCTTTGGCT-----------------------ATAT--GTCTTTTCT----------------------------------------------TT.....................................28180.061000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGC-----CCTTTGGCT-----------------------ATAT--GTCTTT........................................................................................25200.051000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCT..........................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
..............................GATATCTTGACCAAACTCGGCA-----------------------------------------------------------------------------------------------------TTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TCTTTGGCG--TGCCGAAGATAGCCCT.................................................................................................................................................................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GTATTAGATCTTTGGCG--TGCCGAAGAT.......................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................AGCAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTCTG.........................................................................................................................................................................................................................................................24200.051000000000100000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTG......................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGAT...........................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................CAT--TATGAA--------------------------------------------A--------------AAG------TTGGGTC...........................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCCGA...........................................................................................................................................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGC..............................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAGATCTTTGGCG--TGCCGAAGATAGCCC..................................................................................................................................................................................................................29200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGATCTT........................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTGGCG--TGCCGAAGATAGCCCT.................................................................................................................................................................................................................22200.051000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................T--TATGAA--------------------------------------------A--------------AAG------TTGGGTCTGCAAGT....................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCCGAAG.........................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGCG--TGCCGAAGATA......................................................................................................................................................................................................................24200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTTTGGCG--TGCCGAAGATAGCCCTT--..............................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGGCG--TGCCGAAGATAGCCCTT--C.............................................................................................................................................................................................................23200.051000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CAAGGGTATTAGATCTTTGGCG--TGC..............................................................................................................................................................................................................................25200.051000000000100000000000000000000000000000000000000000000000000000
droMoj3
ATTTAAAATTAATTT--ATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-----------TATATTGGAA-TTTT-T------TAAGATTTTCCTGGC-----------------------ATGT--GCTTTGCAT--------------------------------------------------------CGACTCGGT-G--TGCCACTGTTGAGCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTGAAAATAAAAAT---ATTC------------------AACGTACGCAACAT---TCCATAGTTTTT----------------------------------------------------T----TTTAGCTATAAAG---TGAAACTTAGATGTCGGCAGTTTG---------------------------------AC--------------------------------------------------------------------------------------------------------------TCCTGTCTGCAAGGGTATCTGAACTTCGGCT--TGGCCATGTTAGCCGTT--CTTTCGTG-ATTT---------CTATATTGC-------------------------------------------T-----------------------------------------------GATCAATATTACT------------------------------------------TCAA-------------------GGTTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:21 AM