ID:

dan_1041

 Coordinate:

scaffold_12948:347735-347885 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.3 -15.2 -15.2

Flybase annnotation

exon [dana_GLEANR_5080:3]; CDS [Dana\GF21581-cds]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGAGCCATTCGTGTGCTACGGCCCCTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTATATTGTATTTTTCAAATTCTTGTTGTCGTCTCGTTTTGACGCGAGTCTCATTATTTATGGTTTACGTTTCTTTACTTAGTCGGGAAGCGGGATGGGCGAAATGTGCACTAGTGCACTAGGCACTAGTTCATTCATTTTGGCCATCGCTTCACTTAGTTTTTTGTATTTTTTTTATCGTAATCGTATGCAA
***********************************************************************........(((((.((((........)))))))))...................((((((((.((...)).))))))))...************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V055
head
 V105
male body
...........................................................................................................................................................................................TTCATTCATTTTGGCCATCGCTTCACT..................................... 27 0 1 2.00 2 2 0 0 0 0
................................................................................................................................TTCTTTACTTAGTCGGGAAGCGGGA.................................................................................................. 25 0 1 2.00 2 2 0 0 0 0
.....................................................................................................................................TACTTAGTCGGGAAGCGGGATGGGCGA........................................................................................... 27 0 1 2.00 2 2 0 0 0 0
......................................CTGGAATTCCTAGTAAGT................................................................................................................................................................................................... 18 1 6 2.00 12 1 10 0 0 1
.....................................................................................................................................................................................CACTAGTTCATTCATTTTGGCCATCGC........................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................TCTTTACTTAGTCGGGAAGCGGGATGGG.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................TTTACTTAGTCGGGAAGCGGGATGGGC............................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................TTCATTTTGGCCATCGCTTCACTTAGT................................. 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................GTTTACGTTTCTTTACTTAGTCGGGAAG....................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.......................................................................TTCAAATTCTTGTTGTCGTCTCGTTT.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................CACTAGTTCATTCATTTTGGCCATCGCTT......................................... 29 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................TTACTTAGTCGGGAAGCGGGATGGGC............................................................................................. 26 0 1 1.00 1 1 0 0 0 0
................................TAGTGTCTGGAATTCCTAGTGAGTAGT................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................CATTTTGGCCATCGCTTCACTTAGTTT............................... 27 0 1 1.00 1 1 0 0 0 0
.....................................................................TTTTCAAATTCTTGTTGTCGTCTCGTTT.......................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................AGTTTGGCCATCGCTTCACT..................................... 20 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................TACTTAGTCGGGAAGCGGGATGGGC............................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.........................................................................................................GTCTCATTATTTATGGTTTACGTATCTT...................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
............................................TTCCTAGTGAGTAGTTATATTGTATTT.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................TAGTTCATTCATTTTGGCCATCGCTT......................................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................CATTTTGGCCGTCGCTTCACTTAGT................................. 25 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................TCGGGAAGCGGGATGGGCGAAATGTGCA................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................TTATATTGTATTTTTCAAATTCTTGTTG..................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................CTTTACTTGGTCGGGAAGCGGGA.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................CATTTTGGGCATCGCTTCACTTAGTTTT.............................. 28 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................GGAAGCGGGATGGGCGAAATGTGCACT................................................................................. 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................TTAGTCGGGAAGCGGGATGGGCGAAA......................................................................................... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................TCATTTTGGCCATCGCTTCACTTAGTT................................ 27 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................CTAGTTCATTCATTTTGGCCATCGCT.......................................... 26 0 1 1.00 1 1 0 0 0 0
.....................GCCCCTAAAACTAGTCTCTGG................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0
.....................GCCCCTAAAACTAGTGTCTCG................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0
...............................................................................................................................TTTCTTTACTTAGTCGGGAAGCGGG................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................TCGTTTTGACGCGAGTCTCATTATT....................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.......................................TGGAATTCCTAGTAAGTTG................................................................................................................................................................................................. 19 2 6 0.33 2 2 0 0 0 0
.......................................TGGCATTCCTAGTGAGT................................................................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0
.......................................TGGAATTCCTAGTAAGTAC................................................................................................................................................................................................. 19 2 7 0.29 2 0 2 0 0 0
.........................................................................................................................................TAGTAGGGAAGGGGGATGGGAG............................................................................................ 22 3 4 0.25 1 0 0 0 1 0
........................................GGAATTCCTAGTAAGTTGTG............................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
....................................ATCTGGAATTCCTAGTAAGT................................................................................................................................................................................................... 20 2 6 0.17 1 0 1 0 0 0
.....................................TCTGGAATTCCTAGTAAGTGC................................................................................................................................................................................................. 21 3 6 0.17 1 0 1 0 0 0
.....................................TTTGGAATTCCTAGTCAGT................................................................................................................................................................................................... 19 2 6 0.17 1 0 0 1 0 0
.....................................TCTGGAATTCCTAGTAAGTG.................................................................................................................................................................................................. 20 2 6 0.17 1 0 1 0 0 0
.....................................CGTGGAATTCCTAGTGAGT................................................................................................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0
......................................CTGGAATTCCTAGTAAGC................................................................................................................................................................................................... 18 2 19 0.16 3 0 3 0 0 0
.......................................TGGAATTCCTAGTGAGTGC................................................................................................................................................................................................. 19 2 7 0.14 1 0 1 0 0 0
...................................CATCTGGAATTCCTAGTAAGT................................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
......................................CTTGAATTCCTAGTAAGT................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1
.....................................TTTGGAATTCCTAGTTAGT................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 1 0
......................................CGGGAATTCCTAGTAAGT................................................................................................................................................................................................... 18 2 9 0.11 1 0 1 0 0 0
......................................CTGGAATTCCTAGTATGT................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 1 0
.......................................TGGAATTCCTAGTAAGTTGA................................................................................................................................................................................................ 20 3 10 0.10 1 0 1 0 0 0
......................................CTGGAATTACTAGTAAGT................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 1 0 0
......................................TTGGGATTCCTAGTGAGT................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0
......................................CTGGAATTCCTAGTAGGT................................................................................................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0
.......................................TGGAATTCCTAGTCAGTCTT................................................................................................................................................................................................ 20 3 13 0.08 1 0 0 1 0 0
......................................GTGGAATTCCTAGTAAGTTG................................................................................................................................................................................................. 20 3 18 0.06 1 1 0 0 0 0
.....................................TAGGGAATTCCTAGTAAGT................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
..............................................................................................................ATTATGTATGGTTGATGTTT......................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0
....................................................................................................................TATGGTTTACGTATCTA...................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

ATCTCGGTAAGCACACGATGCCGGGGATTTTAATCACAGACCTTAAGGATCACTCATCAATATAACATAAAAAGTTTAAGAACAACAGCAGAGCAAAACTGCGCTCAGAGTAATAAATACCAAATGCAAAGAAATGAATCAGCCCTTCGCCCTACCCGCTTTACACGTGATCACGTGATCCGTGATCAAGTAAGTAAAACCGGTAGCGAAGTGAATCAAAAAACATAAAAAAAATAGCATTAGCATACGTT
**************************************************************************************************........(((((.((((........)))))))))...................((((((((.((...)).))))))))...*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
....................................CCGACCTTAAGGAACATTCATC................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0
..............................................................................AGAACAACAGGATAGCAAA.......................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0
...........CACACGATGTCGGGAATATT............................................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 1 0
..................................................................................CAACAGAAGAACAAAACTG...................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0
.............................................................................AAGAACAACAGAAGAGCAAAAGA....................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0
............ACACAATGTCGAGGATTTTAA.......................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0
..................................................................................CCACAGCAGAACAAAACT....................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0
.............................................................................AAGAACAAAAGCAGACCAAAAG........................................................................................................................................................ 22 3 15 0.07 1 1 0 0 0
...........................................................................................................................................CAGCCCGTCGCCCAAACCG............................................................................................. 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:347685-347935 - dan_1041 TAGAGCCATTCGTGTGCTACGGCCCCTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTATAT-TGTATTTTT-------------------CAAA----------------TTCTTGTT------------------------------GTCGT---CTCGTTTT-------GACG---------CG----------------------------------------------AGTCTCATT-------------------------------------------ATTTATGGTTTACGTTTCTTT--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGGCGAAA---TGTGC---ACTAGTGCACTAGGC------ACTAGT-TCATTCATTTTGGCCATCGCTTCACTTAGTTTTT--TG-----TATT-TTTTT----TATC-------------------GTAATCGTAT-GC--A---------------------A---------------
droBip1 scf7180000395643:9610-9867 + TAGAGCCATTCGTGTGCTACGGCCCCTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-ATTTATATT-------------------TAATTTT-TCT-------ACTTGTTG------------------------------------TCATGTCGTTTC-------GACG---------CG--------------------------------------------AAAGTCTCCTC-------------------------------------------ATTTATGGTTTATGGTTTCTA----------------------------------TTTATTTACTTAGTCGAGAAGTGAAATGGGCGAAA---TGTGTG---------------GCTCAAAAACGAGA-TCATTCATTTTGGCCATCGCTTTACTTAGTTTT---TG-----TATT-GTTTT----AAAC-------------------GTAATCGTAT-AT--A---------------------A---------------
droKik1 scf7180000302441:103559-103817 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TTGTTTTTGATATATTTCATCAGCTT--------C-TCG-TCGTCTTCTTT-AATT------------------------------GTTGTCTTGAC------AT-T-------TTGATT-TCT--AAATATTAGAA-------------------A------TTGATGTAAATT----------------------------------------------------------------TTAT----------------------------------GTTTTCTTTA-----------------------AA---TGTGAA---------------TCTCTA------------------------GAA-----TCTTAGTTTT---AA-----TTTTAATTTT----AAATATTTAATATATATATGTGTGTATACTTGT--GTAATCATTGGCTG------TG---A---------------
droFic1 scf7180000454073:108170-108442 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTAAT-------------------CAACTTT-TCT-ACTTCTACTTCTCGTT------------------------------GTCGTTTATAC------GT-TTATACGTTT-ATTTTC--------------------------------------------------CTCTTGAGTGTGTGTAAATGTAACCATTAATGCGAGAGTGTGTGTTT--------A-------ATT----TATAATATAATAATTT----------------------ATTTCTAGTAAGA-----GTGA-GTGCAA--------GTG--------------------------AGA-GTCTCCAT----------------CTTAGTTATTATTA-----TTTTATTTTC----GAAC-------------------GTACTAGTG--TG--A---------------------T---------------
droEle1 scf7180000491242:236729-237063 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTA-CCCAACTTCTTGTTGTCGTTGTCGTTGTACCTTGTTCCTTGTT------CCTTGTCT--AT------AT-T------TTT-ATTTTCT--A-A------------------------CGCC------TCGCTCCAGACT-TTAAGTGTGTG--AATGT-ATCA-TAATGCGAGAGTTTCCTTTT--------C-------ATT----TTCAATTT--TATTTTATTTCTTT-AA--------------GTGAGTACGA-----GTGA-GTGCAAAA---T--------------------------------GATCCATTCATTTTTGCCACC-----ACTTAGTTT-C--GG-----TTT-CGGTTGTGTTAAAC-------------------GTACTCTTTT--GAATGTAA------TGGTTGTGGCAC---------------
droRho1 scf7180000763611:89371-89712 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTA-CCAAACTTCTTCCTGTTGTTGTTGTTGTT-------CCT--TTACTTG------TCGTATTTC-------T-----TTTT-ATTTTCT--AA--TCCATACC---------GA-GTACGCC------TCGCTCCAGAATCTTAAGTGT--GTAAATGT-ATCA-TAATGCGAGAGTTT--TTT-------------------------TTAATTT--TAGTTTATTTCTCTGAA--------------TCTAGTACGA-----GTGA-GTGCAAAA---TGAGTGATACA---------------------AGA-GCCTCCATTTTTGCCACC-----ACTTAGTTT-C--GA-----TTTT-GTTTT----AAAC-------------------GTACTCTTTT--GAATGTAA------TGGTTGTGGCAC---------------
droBia1 scf7180000302126:641160-641430 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTT-----------------CCTT------------------------------CTTGTCGTTGT------AC-T------ATT-ATTTTCC-TAA--ACCAATCGGCGATTGT-GA-TTACG-A------TCGCTCGAGAAATTT--------------G--------------AAATTTT--TATT--------T-------AC-CT--ATAAATCT--TAACTAAATTATCT-AA--------------TCTAGTATGT-----GTGC-GTG--------------ATACA---------------------AGA-GCCTCCATTTC----TTC-----ACTTAGTTT-C--GA-----TTTTG-TTTT--AAAAAC-------------------GTACTCTTTT-TG--A---------------------A---------------
droTak1 scf7180000414222:37980-38317 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTT-TCCAACTTCTTCTTGTCGTTACCGTT------------------CTCGTCGTTGTCTTTTC------TTAT------TTTGTGT-TCA--AAA--TTCTACC--------TAAGTTATG-A------TCGCTCCAAACTTTTAAGTGTGTGTAAATGTTATCA-TAATGAGTGAGTGTGTTTTG--------G-A-----ATT----CTTAATTTTTCA-TTTAT-TCTCTGTATGTGTGTTTT-ATTTTTAGTATGT-----GTGT-GTG--------------ATATA---------------------AGA-GCCTCCATTTTTGCCACC-----ACTTAGTTT-C--GA-----TTTTA-TTTT----GAAC-------------------GTACTCTTTT-CT--A---------------------T---------------
droEug1 scf7180000409008:1264392-1264640 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTA-TGTTTAAAT----AATCAATAATCTT--------T-TAT-ACTTCTTCTTGATGTTGTTGTAAA--------------------------TCATT-------------------TTGTTT-TAT-TCT--------------------------G-ATTGATCCTATACCAGAAACCTAACTGTGTGTTAAAA--------------AGAAAGTGCTTTT--------GGTTTATAATTTCA------------------------TGAA--------------GTTTGTAAGA-----GTGA-GTGGTTA-------------------------------------------------------ACC-----ACTTAGTTTT---GA-----TTTTCATTAT----AAA-------------------------------------------------------------------------
dm3 chrX:11871267-11871544 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCTTTCC------AT-T------CTTGATT-TTT-AAA--GCCAAAC-------------------C------TCACTCCAGACTCTTTAATGTGCGTAAATG--------------AGAT--TGTTTTTTTTTTTA-A-------ATTGTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GTGGAAAA---CGAGTGAGAAA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------
droSim2 x:11246945-11247215 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT-----------------------------TGTTGTCTTTAC------AT-T------CTTGATT-T--TAAAA--CCAAAT-------------------C------TCGCTCCAGACTCTTTAATGTGCGTACATG--------------AGAT--TGTTTTT--------G-------ATTCTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GTGGAAAA---CGAGTAAGACA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------
droSec2 scaffold_53:87804-88073 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAAAT-------------------CTAC----------------ATGTCGTT-----------------------------TGTTGTCTTTAC------AT-T------CTTGATT-T--TAAAA--CCAAAT-------------------A------TCGCTCCAGACTCTTTAATGTGCGTACATG--------------AGAT--TGTTTTT--------G-------ATTCTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GTGGAAAA---CGAGTGAGACA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----TTT-CGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------
droYak3 X:14830093-14830377 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCCTTCTGTTCTAAT-T------CTTGATT-T--TGATACCCCAAAC-------------------C------TTGCTCCAGACTCTTAAGTGTGCGTAAATG--------------AGAC--TGTTTTT--------G-------ATTCTGA----------TT---------TC-------------TGATTTCTAGTACGA-----GTGA-GTGGGAAT---TGTGTGTGAGA---------------------AGA-GCCTGCATCTTTGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTTTTG--A-------CTA-------G---A---------------
droEre2 scaffold_4690:3306598-3306855 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCTTTCC------AT-T------CTTGATT-TTTTGAAA-CCCAAA--------------------C------CCGCTCCAGACTCTTAAGTGTGCGTAAATG--------------AGAC--TGTTTTT--------G-------ATACTGA----------------------------------TTAAATTTCTAGTACGA-----GTGA-GTGGAAAATAATGAGTGA---------------------------------------ATGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------
dp5 XL_group1e:9983962-9984190 + TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTCGTGTTTCAAT------TTAATAATCTCT-CTACTCTTT-----------------------------------CTA--CTACTTT------TCGTATTGTTT-------------TT-ATT--------------------------------------------------------------------TAATG--------------AGAG--TGTCTTT--------G--------------------------------------------------GACGCTCTATTAAGA-----T-----TGTAAAT---ATAGTAACG-------------------------T-AACTATATGATGGTCACT-----CCATCGAATT-GTT-TTTTGTAT-------------TC-------------------GTACTATACATAG--A-------CTG---------------------------
droPer2 scaffold_22:249463-249719 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTCGTGTTTCCAT------TTAATAATCTCT-ATACTCTTT-----------------------------------CTA--CTACTTT------TCGTATGGTTT-------------TT-ATT--------------------------------------------------------------------TTATG--------------AGAG--TATCTTT--------G--------------------------------------------------GACGCTCTATTAAGA-----T-----TGTAAAT---ATAGTAACG-------------------------T-AACTATATGATGGTCACT-----CCATCGATTT-GTTCTTTTGT-------------ATTC-------------------GTACTATACATAG--A-------CTGTGGTAGGGGCTCCTTCGAGCCCATGTA
droWil2 scf2_1100000004909:10290896-10290954 - TAGAGCCATTCGTGTGTTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:8705514-8705587 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTCATAC--ATTTTATT-------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:12710149-12710211 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTCATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:11448749-11448832 - TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTCCTTA-CGTTTCCTC-----------------TTTTACTTT---------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TAGAGCCATTCGTGTGCTACGGCCCCTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTATAT-TGTATTTTT-------------------CAAA----------------TTCTTGTT------------------------------GTCGT---CTCGTTTT-------GACG---------CG----------------------------------------------AGTCTCATT-------------------------------------------ATTTATGGTTTACGTTTCTTT--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGGCGAAA---TGTGC---ACTAGTGCACTAGGC------ACTAGT-TCATTCATTTTGGCCATCGCTTCACTTAGTTTTT--TG-----TATT-TTTTT----TATC-------------------GTAATCGTAT-GC--A---------------------A---------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-TCATTCATTTTGGCCATCGCTTCACT...........................................................................................................2712.002200000
..............................................................................................................................................................................................................................................................................................................TTCTTT--------------------A--CTTA--------------GTCGGGAAGC-----GGGA.....................................................................................................................................................................................2512.002200000
...................................................................................................................................................................................................................................................................................................................T--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGGCGA..............................................................................................................................................................................2712.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................C------ACTAGT-TCATTCATTTTGGCCATCGC.................................................................................................................2711.001100000
...............................................................................................................................................................................................................................................................................................................TCTTT--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGG.................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................TTT--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGGC................................................................................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTTTGGCCATCGCTTCACTTAGT.......................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................GTTTACGTTTCTTT--------------------A--CTTA--------------GTCGGGAAG...............................................................................................................................................................................................2811.001100000
........................................................................TT-------------------CAAA----------------TTCTTGTT------------------------------GTCGT---CTCGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................C------ACTAGT-TCATTCATTTTGGCCATCGCTT...............................................................................................................2911.001100000
..................................................................................................................................................................................................................................................................................................................TT--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGGC................................................................................................................................................................................2611.001100000
................................TAGTGTCTGGAATTCCTAGTGAGTAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTGGCCATCGCTTCACTTAGTTT.....................................................................................................2711.001100000
......................................................................TTTT-------------------CAAA----------------TTCTTGTT------------------------------GTCGT---CTCGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................................................................................................................................................................................................................................................T--------------------A--CTTA--------------GTCGGGAAGC-----GGGATGGGC................................................................................................................................................................................2511.001100000
............................................TTCCTAGTGAGTAGTTATAT-TGTATTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAGT-TCATTCATTTTGGCCATCGCTT...............................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................TCGGGAAGC-----GGGATGGGCGAAA---TGTGC---A................................................................................................................................................................2811.001100000
..........................................................TTATAT-TGTATTTTT-------------------CAAA----------------TTCTTGTT------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................GGAAGC-----GGGATGGGCGAAA---TGTGC---ACT..............................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................TTA--------------GTCGGGAAGC-----GGGATGGGCGAAA---.........................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTGGCCATCGCTTCACTTAGTT......................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTAGT-TCATTCATTTTGGCCATCGCT................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................TTTCTTT--------------------A--CTTA--------------GTCGGGAAGC-----GGG......................................................................................................................................................................................2511.001100000
................................................................................................................................................................TCGTTTT-------GACG---------CG----------------------------------------------AGTCTCATT-------------------------------------------ATT...................................................................................................................................................................................................................................................................2511.001100000
.......................................TGGAATTCCTAGTGAGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141010000
droBip1
TAGAGCCATTCGTGTGCTACGGCCCCTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-ATTTATATT-------------------TAATTTT-TCT-------ACTTGTTG------------------------------------TCATGTCGTTTC-------GACG---------CG--------------------------------------------AAAGTCTCCTC-------------------------------------------ATTTATGGTTTATGGTTTCTA----------------------------------TTTATTTACTTAGTCGAGAAGTGAAATGGGCGAAA---TGTGTG---------------GCTCAAAAACGAGA-TCATTCATTTTGGCCATCGCTTTACTTAGTTTT---TG-----TATT-GTTTT----AAAC-------------------GTAATCGTAT-AT--A---------------------A---------------SizeHit CountTotal NormTotal
No Reads
droKik1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TTGTTTTTGATATATTTCATCAGCTT--------C-TCG-TCGTCTTCTTT-AATT------------------------------GTTGTCTTGAC------AT-T-------TTGATT-TCT--AAATATTAGAA-------------------A------TTGATGTAAATT----------------------------------------------------------------TTAT----------------------------------GTTTTCTTTA-----------------------AA---TGTGAA---------------TCTCTA------------------------GAA-----TCTTAGTTTT---AA-----TTTTAATTTT----AAATATTTAATATATATATGTGTGTATACTTGT--GTAATCATTGGCTG------TG---A---------------SizeHit CountTotal NormTotal
No Reads
droFic1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTAAT-------------------CAACTTT-TCT-ACTTCTACTTCTCGTT------------------------------GTCGTTTATAC------GT-TTATACGTTT-ATTTTC--------------------------------------------------CTCTTGAGTGTGTGTAAATGTAACCATTAATGCGAGAGTGTGTGTTT--------A-------ATT----TATAATATAATAATTT----------------------ATTTCTAGTAAGA-----GTGA-GTGCAA--------GTG--------------------------AGA-GTCTCCAT----------------CTTAGTTATTATTA-----TTTTATTTTC----GAAC-------------------GTACTAGTG--TG--A---------------------T---------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTA-CCCAACTTCTTGTTGTCGTTGTCGTTGTACCTTGTTCCTTGTT------CCTTGTCT--AT------AT-T------TTT-ATTTTCT--A-A------------------------CGCC------TCGCTCCAGACT-TTAAGTGTGTG--AATGT-ATCA-TAATGCGAGAGTTTCCTTTT--------C-------ATT----TTCAATTT--TATTTTATTTCTTT-AA--------------GTGAGTACGA-----GTGA-GTGCAAAA---T--------------------------------GATCCATTCATTTTTGCCACC-----ACTTAGTTT-C--GG-----TTT-CGGTTGTGTTAAAC-------------------GTACTCTTTT--GAATGTAA------TGGTTGTGGCAC---------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTA-CCAAACTTCTTCCTGTTGTTGTTGTTGTT-------CCT--TTACTTG------TCGTATTTC-------T-----TTTT-ATTTTCT--AA--TCCATACC---------GA-GTACGCC------TCGCTCCAGAATCTTAAGTGT--GTAAATGT-ATCA-TAATGCGAGAGTTT--TTT-------------------------TTAATTT--TAGTTTATTTCTCTGAA--------------TCTAGTACGA-----GTGA-GTGCAAAA---TGAGTGATACA---------------------AGA-GCCTCCATTTTTGCCACC-----ACTTAGTTT-C--GA-----TTTT-GTTTT----AAAC-------------------GTACTCTTTT--GAATGTAA------TGGTTGTGGCAC---------------SizeHit CountTotal NormTotal
No Reads
droBia1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTT-----------------CCTT------------------------------CTTGTCGTTGT------AC-T------ATT-ATTTTCC-TAA--ACCAATCGGCGATTGT-GA-TTACG-A------TCGCTCGAGAAATTT--------------G--------------AAATTTT--TATT--------T-------AC-CT--ATAAATCT--TAACTAAATTATCT-AA--------------TCTAGTATGT-----GTGC-GTG--------------ATACA---------------------AGA-GCCTCCATTTC----TTC-----ACTTAGTTT-C--GA-----TTTTG-TTTT--AAAAAC-------------------GTACTCTTTT-TG--A---------------------A---------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTTATT-------------------CTACTTT-TCCAACTTCTTCTTGTCGTTACCGTT------------------CTCGTCGTTGTCTTTTC------TTAT------TTTGTGT-TCA--AAA--TTCTACC--------TAAGTTATG-A------TCGCTCCAAACTTTTAAGTGTGTGTAAATGTTATCA-TAATGAGTGAGTGTGTTTTG--------G-A-----ATT----CTTAATTTTTCA-TTTAT-TCTCTGTATGTGTGTTTT-ATTTTTAGTATGT-----GTGT-GTG--------------ATATA---------------------AGA-GCCTCCATTTTTGCCACC-----ACTTAGTTT-C--GA-----TTTTA-TTTT----GAAC-------------------GTACTCTTTT-CT--A---------------------T---------------SizeHit CountTotal NormTotal
No Reads
droEug1
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTA-TGTTTAAAT----AATCAATAATCTT--------T-TAT-ACTTCTTCTTGATGTTGTTGTAAA--------------------------TCATT-------------------TTGTTT-TAT-TCT--------------------------G-ATTGATCCTATACCAGAAACCTAACTGTGTGTTAAAA--------------AGAAAGTGCTTTT--------GGTTTATAATTTCA------------------------TGAA--------------GTTTGTAAGA-----GTGA-GTGGTTA-------------------------------------------------------ACC-----ACTTAGTTTT---GA-----TTTTCATTAT----AAA-------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCTTTCC------AT-T------CTTGATT-TTT-AAA--GCCAAAC-------------------C------TCACTCCAGACTCTTTAATGTGCGTAAATG--------------AGAT--TGTTTTTTTTTTTA-A-------ATTGTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GTGGAAAA---CGAGTGAGAAA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................TAAGTTCTAGTACGA-----GTGA-GTGGAA..............................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000
...............................TTAGTGTCTGGAATTCCTAGTGAGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000200000
...................................................................................................................................................................................................................................................TAATGTGCGTAAATG--------------AGAT--TGTTTTTT.......................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000
....................................................................................................................................................................................................................................TCACTCCAGACTCTTTAATGTGCGTA.......................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
................................TAGTGTCTGGAATTCCTAGTGAGTAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000
...................................................................................................................................................................................................................................................TAATGTGCGTAAATG--------------AGAT--TGTTTT.........................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
TAGAGCCATTCGTGTGCTACGGCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100000
.................................................................................................................................................................................................................................................TTTAATGTGCGTAAATG--------------AGAT--TGTTTT.........................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................................................................................................................................................................................................................................................................................................................TTAAGTTCTAGTACGA-----GTGA-GTGGAA..............................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................GCCCTTAAAATTAGTGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GT............................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000
................................TAGTGTCTGGAATTCCTAGTGAGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------AGA-GCCTGCATTTTTGCCACC-----..............................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000
......................................................................................................................................................................................................................................................TGTGCGTAAATG--------------AGAT--TGTTTTTTTTT....................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTA.........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTTTTGCCACC-----ACTTAGTTTTC--.................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTCCTAGTGAGTAGTTCCTC-TGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................TAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----..........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTCGTT------------------------------GTTGTCTTTCC------AT-T------CTT................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................TGTCTGGAATTCCTAGTGAGTAGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------AGA-GCCTGCATTTTTGCCACC-----ACT...........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................TCTAGTACGA-----GTGA-GTGGAAAA---CGAGT....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................AAAATTAGTGTCTGGAATTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TGTTTTTTTTTTTA-A-------ATTGTGT----------------------------------TTTAA..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....GCCATTCGTGTGCTACGGCCCTTAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................T-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCTTTCC------AT-T------...................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------AGA-GCCTGCATTTTTGCCAC....................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TACGGCCCTTAAAATTAGTGTCTGGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TTAAGTTCTAGTACGA-----GTGA-GTGG................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................TCTGGAATTCCTAGTGAGTAGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................TAAAATTAGTGTCTGGAATTCCTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTGCCACC-----ACTTAGT.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
TAGAGCCATTCGTGTGCTACGGCCCTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTTAAGTTCTAGTACGA-----GTGA-GTGGAA..............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------AGA-GCCTGCATTTTT.........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................TACGGCCCTTAAAATTAGTGTCTGGAATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCTAGTACGA-----GTGA-GTGGAAAA---CGAG.....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TGTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-G...................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................TACGA-----GTGA-GTGGAAAA---CGAGTGAGACT---------------------T........................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TACGA-----GTGA-GTGGAAAA---G........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................TGTGCGTAAATG--------------AGAT--TGTTTTTTT......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCACC-----ACTTAGTTTTC--GA-----T.........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATTCGTGTGCTACGGCCCTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTG..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................TGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GT..................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................TGTCTGGAATTCCTAGTGAGTAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................C----------------ATGTCGTT------------------------------GTTGTCTTTCC------AT-T------CTTG...............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTT..................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTCCTAGTGAGTAGTTCCTC-TGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................TTAGTGTCTGGAATTCCTAGTGAGTAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................AA---CGAGTGAGAAA---------------------AGA-GCCTGCATTTT..........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAG........................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................AA---CGAGTGAGAAA---------------------AGA-GCCTGCATT............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......CATTCGTGTGCTACGGCCCTTAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TAATGTGCGTAAATG--------------AGAT--TGTTTTT........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................TC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT-----------------------------TGTTGTCTTTAC------AT-T------CTTGATT-T--TAAAA--CCAAAT-------------------C------TCGCTCCAGACTCTTTAATGTGCGTACATG--------------AGAT--TGTTTTT--------G-------ATTCTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GTGGAAAA---CGAGTAAGACA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................AA---CGAGTAAGACA---------------------AGA-GCC..................................................................................................................................1911.00100100000000000000
........................................................................................................................................................................................................................................................TGCGTACATG--------------AGAT--TGTTTTT--------G-------ATTC....................................................................................................................................................................................................................................................2611.00100000000000010000
droSec2
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAAAT-------------------CTAC----------------ATGTCGTT-----------------------------TGTTGTCTTTAC------AT-T------CTTGATT-T--TAAAA--CCAAAT-------------------A------TCGCTCCAGACTCTTTAATGTGCGTACATG--------------AGAT--TGTTTTT--------G-------ATTCTGT----------------------------------TTTAAGTTCTAGTACGA-----GTGA-GTGGAAAA---CGAGTGAGACA---------------------AGA-GCCTGCATTTTTGCCACC-----ACTTAGTTTTC--GA-----TTT-CGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCCTTCTGTTCTAAT-T------CTTGATT-T--TGATACCCCAAAC-------------------C------TTGCTCCAGACTCTTAAGTGTGCGTAAATG--------------AGAC--TGTTTTT--------G-------ATTCTGA----------TT---------TC-------------TGATTTCTAGTACGA-----GTGA-GTGGGAAT---TGTGTGTGAGA---------------------AGA-GCCTGCATCTTTGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTTTTG--A-------CTA-------G---A---------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................TACGA-----GTGA-GTGGGAAT---TGTGTGTGA................................................................................................................................................................2611.00101000000000
droEre2
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTC-TGTTTAATT-------------------CTAC----------------ATGTCGTT------------------------------GTTGTCTTTCC------AT-T------CTTGATT-TTTTGAAA-CCCAAA--------------------C------CCGCTCCAGACTCTTAAGTGTGCGTAAATG--------------AGAC--TGTTTTT--------G-------ATACTGA----------------------------------TTAAATTTCTAGTACGA-----GTGA-GTGGAAAATAATGAGTGA---------------------------------------ATGCCACC-----ACTTAGTTTTC--GA-----TTTTCGTTTG----AAAC-------------------GTACTCTTTT-TG--A---------------------C---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTCGTGTTTCAAT------TTAATAATCTCT-CTACTCTTT-----------------------------------CTA--CTACTTT------TCGTATTGTTT-------------TT-ATT--------------------------------------------------------------------TAATG--------------AGAG--TGTCTTT--------G--------------------------------------------------GACGCTCTATTAAGA-----T-----TGTAAAT---ATAGTAACG-------------------------T-AACTATATGATGGTCACT-----CCATCGAATT-GTT-TTTTGTAT-------------TC-------------------GTACTATACATAG--A-------CTG---------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....GCCATTCGTGTGCTACGGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTTCCTCGTGTTTCCAT------TTAATAATCTCT-ATACTCTTT-----------------------------------CTA--CTACTTT------TCGTATGGTTT-------------TT-ATT--------------------------------------------------------------------TTATG--------------AGAG--TATCTTT--------G--------------------------------------------------GACGCTCTATTAAGA-----T-----TGTAAAT---ATAGTAACG-------------------------T-AACTATATGATGGTCACT-----CCATCGATTT-GTTCTTTTGT-------------ATTC-------------------GTACTATACATAG--A-------CTGTGGTAGGGGCTCCTTCGAGCCCATGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAGAGCCATTCGTGTGTTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTCATAC--ATTTTATT-------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTCATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAGAGCCATTCGTGTGCTACGGCCCTTAAAATTAGTGTCTGGAATTCCTAGTGAGTAGTCCTTA-CGTTTCCTC-----------------TTTTACTTT---------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:03 AM