ID:

dan_1040

 Coordinate:

scaffold_12948:347516-347666 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.9 -1.8 -1.8

Flybase annnotation

CDS [Dana\GF21581-cds]; exon [dana_GLEANR_5080:4]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTGTATTTTTTTTATCGTAATCGTATGCAAAAGATTGGTTTGCTGCGAACGATTGTCGGACGACAACCGTGTCCTAATTGTGTGCAGAGCCATCGAAATTCCATTTTCTAATCCAATATCTAACCCCTCAAACATCGTCCACCCAACCCACGTGGCGGAACGGAACTGATCGGATCGGATTGATGATTACCCACAACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTATTG
*************************************************************************........((((...(((.....((.(((..(((....)))..))).))......)))..))))........********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V106
head
 M058
embryo
 V039
embryo
 V055
head
..........................................TGCTGCGAACGATTGTCGGACGACAAC...................................................................................................................................................................................... 27 0 1 10.00 10 10 0 0 0 0 0
.....................................TGGTTTGCTGCGAACGATTGTCGGAC............................................................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0 0 0
......................................................................................................................TATCTAACCCCTCAAACATCGTCCACC.......................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0
.........................................................................TCCTAATTGTGTGCAGAGCCATCGAAA....................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0
......................................GGTTTGCTGCGAACGATTGTCGGAC............................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................AACATCGTCCACCCAACCCACGTGGCG............................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................TCAAACATCGTCCACCCAACCCACGTGGC............................................................................................. 29 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................CACCCAACCCACGTGGCGGAACGGAAC................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................CGGATTGATGATTACCCACAACAGGTT............................................... 27 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................TCGGATTGATGATTACCCACAACAGGTT............................................... 28 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................AAATCTATAATCAAGGCGATGGCACCTT..... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CCCTCAAACATCGTCCACCCAACCCACG................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................ATTGTGTGCAGAGCCATCGAAATTCCAT................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................TAACCCCTGAAACATCGTCCACCCAACC..................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.....................................TGGTTTGCTGCGAACGATTGTCGGACG........................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................TGTCCTAATTGTGTGCAGAGCCATCGAAA....................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................CCCACGTGGCGGAACGGAACTGATCGGA........................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.....................................TGGTTTGCTGCGAACGATTGTCGGACGA.......................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................CCCCTCAAACATCGTCCACCCAACCCAC.................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..................................................................................TGTGCAGAGCCATCGAAATTCCATTTTC............................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................TGATCGGATCGGATTGATGATTACCCA........................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.....................................TGGTTTGCAGCGAACGATTGTCGGAC............................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................GCAGAGCCATCGAAATTCCATTTTCT............................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.....................................................................CGTGTCCTAATTGTGTGCAGAGCCATC........................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TCCAATATCTAACCCCTCAAACATCGTCC............................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................CATCGTCCACCCAACCCACGTGGCGGAA......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.........................TATGCAAAAGATTGGTTTGCTGCGAACG...................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................TGTCCTAATTGTGTGCAGAGCCATC........................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................TGGTTTGCTGCGAACGATCGTCGGACGA.......................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................TATCTAACCCCTCAAACATCGTCCACCC......................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................TGGCGGAACGGAACTGATCGGATCGGA...................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TAAAATCTATAATCAAGGCGATGGCAC........ 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TATAATCAAGGCGATGGCACCTTT.... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TCAAACATCGTCCACCCAACCCACGTGG.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..........................................TGCTGCGAACGATTGTCGGACGAC......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...........................TGCAAAAGATTGGATTGATGCGAACGAT.................................................................................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0
...............................................................................TTGTGTGCAGAGCCATCGAAAATCCAT................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................AAAATCTATAATCAATGCGATGGCAC........ 26 1 1 1.00 1 1 0 0 0 0 0
..............TATCGTAATCGTATGCAAAAGATTGGT.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................TGGCGGAACGGAACTGATCGGATCGGAT..................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.........................................TTGCTGCGAACGATTGTCGGACGACAAC...................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CCCTCAAACATCGTCCACCCAACCCA................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................TCCACCCAACCCACGTGGCGGAACGGAAC................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................CCCCTCAAACATCGTCCACCCAACCCA................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................TGTCCTAATTGTGTGCAGAGCCATCGA......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................GAACTGATCGGATCGGATTGATGATTACC.......................................................... 29 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................TATCTAACCCCCCAAACATCGTCCACC.......................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
....................................................GATTGTCGGACGACAACCGTGTCC............................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................TGTGTGCAGAGCCATCGAAATTCCAT................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
............................................................GACGACAACCGTGTCCTAATTGTGTGCA................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................................................................TTGTGTGCAGAGCCATCGAAATTCCAT................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................TTGTGTGCAGAGCCATCGA......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TCAAACATGGTCCACCCAACC..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................CCACGTGGAGGAACGGAACTGATCGGA........................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................TAACCCCTCAAACATCGTCCACCCAACC..................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................AATATCTAACCCCTCAAACATCGTCCACC.......................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................CAATATCTAACCCCTCAAACATCGTCC............................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................AACCCCTCCAACATCGTCCACCCAACCCA................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................AACCCCTCAAACATCGTCCACCCAACCCA................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
....................................TTGGTTTGCTGCGAACGATTGTCGGAC............................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
...............................AAAGATTGGTTTGCTGCGAACGAT.................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................ACCCAACCCACGTGGCGGAACGGAACTGA................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
............................................................................TAATTGTGTGCAGAGCCATCGAAAT...................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
......................................GGTTTGCTACGAACGATTGTCGGAC............................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................CACGTGGCGGAACGGAACTGATCGGA........................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TCAAACATCGTCCACCCAACCCACGTG............................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................TAACCCCTCAAACATCGTCCACCCAACCC.................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
..................................................................AACCGTGTCCTAATTGTGTGCAGAGCCA............................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
.........................................TTGCTGCGAACGATTGTCGGACGACAACC..................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................TCGGATCGGATTGATGATTACCCACAACA................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................AAACATCGTCCACCCAACCCACGTGGCG............................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................TGATCGGAACGGATTGATGATTACCCAC....................................................... 28 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCTAACCCCTCAAACATCGTCCACCCA........................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................CAAACATCGTCCACCCAACCCACGTGGC............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................TATTGAGGATTACCCACCACA................................................... 21 3 3 0.33 1 0 0 0 1 0 0
................................................................ACAACCGCGTCCTCATTG......................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0
........................................................................................................................................................................TGATCGGGTCGCAGTGATG................................................................ 19 3 10 0.10 1 1 0 0 0 0 0
.............................................................ACGAGGACCGTGGCCTAAT........................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 1
....................................................................................................................................AACACCGTACACCCAAGCCA................................................................................................... 20 3 13 0.08 1 0 0 0 1 0 0
.............................AAAAGGATGGGTTTGCTGCG.......................................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AAAACATAAAAAAAATAGCATTAGCATACGTTTTCTAACCAAACGACGCTTGCTAACAGCCTGCTGTTGGCACAGGATTAACACACGTCTCGGTAGCTTTAAGGTAAAAGATTAGGTTATAGATTGGGGAGTTTGTAGCAGGTGGGTTGGGTGCACCGCCTTGCCTTGACTAGCCTAGCCTAACTACTAATGGGTGTTGTCCAAATGTTCATCAAAATTTTAGATATTAGTTCCGCTACCGTGGAAATAAC
**********************************************************************************************************........((((...(((.....((.(((..(((....)))..))).))......)))..))))........************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 M044
female body
......................................................................CACAGGATTAAGACACGTCC................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................TGTTGTCCATATGTTCAT....................................... 18 1 2 0.50 1 0 1 0 0
.........................................................................................................................................................................................ACAAATAGGTGTAGTCCAAAT............................................. 21 3 3 0.33 1 0 1 0 0
...............................................................................................................................GGAGTTGGTATCAGGTGCGT........................................................................................................ 20 3 3 0.33 1 0 0 1 0
........................................................................................................................................ATCAGGTGGGTTGGGTTC................................................................................................. 18 2 4 0.25 1 0 0 0 1
..........................................................................................................................................................ACCACCTTGCCTCGACTA............................................................................... 18 2 5 0.20 1 1 0 0 0
..............................................CGCTTGCTAGCAGCCTGA........................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0
..............................................................................................................ATCGGGTTATAGAGTGGGGA......................................................................................................................... 20 3 5 0.20 1 0 0 1 0
..................................................................................................................................................................................................TGTTGTCAATATGTTCAT....................................... 18 2 17 0.12 2 0 2 0 0
..................................................................................................................................................................................................TGGTGTCCATATGTTCAT....................................... 18 2 9 0.11 1 1 0 0 0
........................................................................................................TCAAACATTAGGTTATAGA................................................................................................................................ 19 2 12 0.08 1 0 0 1 0
..........................................................................................................................................................................TAACCCAGCCTAACTAGTA.............................................................. 19 3 18 0.06 1 0 0 1 0
..............................................................................................................................................................................CTACCCTAATTAGTAATGG.......................................................... 19 3 20 0.05 1 0 1 0 0
.............................................................................................................................................GTGCGTTGGGGGCATCGC............................................................................................ 18 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:347466-347716 - dan_1040 TTTT--GTATTT-TTT-T-TATCG------------------------------------TAATCGTA-TGCAAAAGATTGGT------TTGC----TGCGAACGATTGTCGG------------------------------ACGACAACCGTGTCC--TAATTGTGTG--C--AG--AGCCATCGA-------A-ATTCCAT--TTTCTAATCCAATATCTAACCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------CGGAA-CGGAA-----CTGA--TCGGATC-----GGATTGATGATTA---C---CCACA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTATTG
droBip1 scf7180000395643:9837-10095 + TTTG---TAT-TGTTT-T-AAACG------------------------------------TAATCGTA------TATAATGATTGGT--TTGC----TGCGCATGATTGTCATGG---ATCCTA---------GCAACTTTCCACGACAACCGTGCCA--TAAATATGTG--C--AG--AGCCATCAA-------A--ATTTCAC-TTACTAATCCAACATCTAATCTCCTTGAATC-------ACTC-----------------ACCC-AAATTACGTCA--------CGGAA-TGGAT-----CTGA--T------------GATTGATGATTA---C---CAAAA--ATAGGTTTACAAGTAGTTTTAAAATCTATTATCAAGGCGATGGCACCTTTATTG
droKik1 scf7180000302441:103785-104018 + ATGT--GT---------------G------------------------------------TATACTTG--TGTAATCATTGGCTG-T--GACG----GGTACATGGTTGTTGTAG---ATCGTA---------G----TAGCTATGACAGCCATGTCC--A---------------------TTGC---------A-TTAGCATC-TTTCTAATCCAACGTCCAATCTCTT-CA----AACT--AATCCAACAATCTGCC-----AACTT------------------------CTGGAT-----CTGCGCCTGCCTC-----GGATGGAC----A---T---CTCCT--ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droFic1 scf7180000454073:108409-108671 + ATTATTATTTTATTTT-C-GAACG------------------------------------TACTAGTG--TGATTAGATTGGTTG-T----GT----GAAACATGGTTGTCGTAG---AGCTCGAAAGAAT-TA----ATTCTTTGACAACCATGTATGTTAAGTGTGTGTAAACGATCGCCCTCC---------T-TTTGAATC-CTTCTAATCCCGCGTAATATTTCTC-CA--CAA---TCAAC---------------------ATCAAC------------------------AT-----TTAACTCTGGATT-----GGATGAGC----G---A---CGTCT--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droEle1 scf7180000491242:237018-237256 + TTCG--GTT---GTGT-T-AAACG------------------------------------TACTCTTT--TGAATGTAATGGTT-------GT----GGCACATGGTTGTCCTAG---AGCTTG---------GA-ACTGTCTGTGACAACCATGTCC--TAAATGTGCA--C--ACGT-CGCTGT---------A-TACTTACC-TTTCTAATCCAATATCCCATTTT-T-TAACC-------AATC-----------------AACA------------------------------T-----CTAAATTTGGATC-----GGATGAAC----GT------CGCCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droRho1 scf7180000763611:89671-89936 + TTT---------GTTT-T-AAACG------------------------------------TACTCTTT--TGAATGTAATGGTT-------GT----GGCACATGGTTGTCGTAG---AGCCTA---------CAAATTGTCTGTGGCAACCATGTAC--TAAATGTGAA--C--ACGGCCCCCGT---------T-TTCCTATC-TTGCTAATCCAATATCCCATTTCTT-TAACC-------AACC-----------------AACA-ACGTTACGTCGTCATATCGTGT------CGCTGAATTTATTTTGGATC-----GGATGAAC----G---C---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droBia1 scf7180000302126:640932-641192 - T-CG--ATTTT-GTTTTAAAAACG------------------------------------TACTCTTT-TTGAATAGAATGGTTG-TTGTTGT----GGCAAATGGTTGTCGTAG---AGCTTGCCAA--------ACAGTCTGTGACAACCATGTCC--TGTATGTGAA--C--ACACCCCCAGC---------C-TTCTGATC-TTGCTAATCCAACGTCCCCTCTCTT-TAATCAA---ACAACT-----------------AAA-----CA------------------------A-----CCAACTCTGGAAC-----GGATGAAC----TTCGA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droTak1 scf7180000414222:38292-38543 + TTTA---------TTT-T-GAACG------------------------------------TACTCTTT-TCTATTAGAATTGTTG-T--TTGTACCTGGAACATGGTTGTCGTAG---AGTTTGTGAAACTTTC----TTTCTGTGACAACCATGTCC--TAAATGTGAA--C--ACACCCGATGC---------A-TTCTGATC-TTTCTAATCCAACGTCCCGTTTCTT-TAACC-------AACC-----------------AA--------------------------------------TTAACTCTGGATC-----GGATGAAC----GCCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droEug1 scf7180000409008:1264189-1264408 - TTG---ATTTTCATTA------------------------------------------------------TAAATAGACTGATTG-T--TTGT----GGTTGTTGGTTGTCGTAG---A---------------------------ACAACCTTGTTC--TAAATGTAAA---ACCCAAACTAAG------------TACCCATCTTTGCTAATTCAATATCTTATCTCCT-TAATC-------AATC-----------------GAAA-A----------------------------C-----TTTCTTCTGGATT-----GGATAAAT----GACAA---CGTGA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
dm3 chrX:11871028-11871299 - TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGATTG-T--TTGT----GGCACATGATTGTCGTGGAGGAGCTT---------TCAA--TGTCTGCGACAATCATGTCC--TAAATGTGAA---ACACATACCCAGC---------A-TATGCATC-TTTCTAATCCAACGTCCATCTTCTC-CA----A---ACAACT-----------------AACC-AATCAACTTA-------------------ACTGAATCGTTTCTGGATCGAATCG---GAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droSim2 x:11246717-11246977 - dsi_28730 TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGGTTG-T--TTGT----GGCACATGATTGTCGTGGCGGAGCTA---------TCCA--TGTCTGCGACAATCATGTCC--TAAATGTGAA---ACACATATCCAGC---------A-TATCCATA-TTTCTAATCCAACGTCCATCTTCTC-CA----A---ACAACT-----------------AAC-----T-----A-------------------ACTGAATCGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droSec2 scaffold_53:87577-87835 - TTCG--ATT-TCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGGTTG-T--TTG-----GGCACATGATTGTCGCGGTGGAGCTA---------TCCA--TGTCTGCGACAATCATGTCC--TAAATGTGAA---ACACATATCCAGC---------A-TATCCATA-TTTCTAATCCAACGTCCATCTTCTC-CA----A---ACCACT-----------------AAC-----T-----A-------------------ACTGAATCGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droYak3 X:14830340-14830608 + TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTTTTTGACTAGAATGGTTGTT--TTGT----GGCACATGGTTGTCGTGG---AGCTT---------TCCA----GCTGCGACAATCATGTCC--TAAATGTGAA--C--ACATACCCAGC---------A-TACACATC-TTTCTAATCCAACGTACATCTTCTC-CA----A---TCAACT--------C--------AACC-AATCAACTCAA-------------CCA--A-TCAA-CGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droEre2 scaffold_4690:3306823-3307083 + TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGGTTG-T--TTGT----GGCACATGGTTGTCGTGG---AGCAC---------TCCG--TATCGGCGGCAACCATGTCC--TAAATGTGAA--C--ACATACCCAGC---------A-TACCCAGC-TTTCTAATCCAACGTCCATCTTCTC-CA----A---CCAACC-----------------AACC-AATCA------------------------ACTGAATCGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
dp5 XL_group1e:9984164-9984404 + TTTT--GTATTCGTAC-T-ATACATAGACTGTGGTAGGGGCTCCTTCGAGCCCATGTAAA-------------------------------------------------------------------------------------------------TATT-AATGTGT----------AACTAGCAAAAGCTGCATTGCGAATCTTTTCTAATCCAAC--CCATTCTTTC-CA----A-CT--CTTCAATCGACCCGCCGTGGAA--A-------------------------CCGAAA-----CTGAAACTGGATT-----GGATCTAC----ATCTACATCGTCCACATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droPer2 scaffold_22:249276-249491 - TGTG--GTAG---------------------------GGGCTCCTTCGAGCCCATGTAAA-------------------------------------------------------------------------------------------------TATT-AATGTGT----------AACTAGCAAAAGCTGCATTGCGAATCTTTTCTAATCCAAC--CCATTCTTTC-CA----A-CT--CTTCAATCGACCCGCCGTGGAA--A-------------------------CCGAAA-----CTGAAACTGGATT-----GGATCTAC----ATCTACATCGTCCACATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droWil2 scf2_1100000004909:10290401-10290455 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droVir3 scaffold_12970:8705077-8705130 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droMoj3 scaffold_6473:12709674-12709725 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG
droGri2 scaffold_15203:11448255-11448308 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTT--GTATTT-TTT-T-TATCG------------------------------------TAATCGTA-TGCAAAAGATTGGT------TTGC----TGCGAACGATTGTCGG------------------------------ACGACAACCGTGTCC--TAATTGTGTG--C--AG--AGCCATCGA-------A-ATTCCAT--TTTCTAATCCAATATCTAACCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------CGGAA-CGGAA-----CTGA--TCGGATC-----GGATTGATGATTA---C---CCACA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTATTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................TGC----TGCGAACGATTGTCGG------------------------------ACGACAAC.............................................................................................................................................................................................................................................................27110.00101000000
...............................................................................TGGT------TTGC----TGCGAACGATTGTCGG------------------------------AC...................................................................................................................................................................................................................................................................2613.003300000
..........................................................................................................................................................................................................................TATCTAACCCCTC-AA--------ACATCG-----TC-C--------ACC........................................................................................................................................2713.003300000
...........................................................................................................................................................TCC--TAATTGTGTG--C--AG--AGCCATCGA-------A-A..............................................................................................................................................................................................................2713.003300000
................................................................................GGT------TTGC----TGCGAACGATTGTCGG------------------------------AC...................................................................................................................................................................................................................................................................2512.002200000
.........................................................................................................................................................................................................................................A--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------CG.................................................................................................................2712.002200000
.....................................................................................................................................................................................................................................TC-AA--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------C..................................................................................................................2912.002200000
................................................................................................................................................................................................................................................................C--------ACCC-AACCCACGTGG--------CGGAA-CGGAA-----C..................................................................................................2712.002200000
.............................................................................................................................................................................................................................................................................................................................C-----GGATTGATGATTA---C---CCACA--ACAGGTT...............................................2712.002200000
............................................................................................................................................................................................................................................................................................................................TC-----GGATTGATGATTA---C---CCACA--ACAGGTT...............................................2812.002200000
...................................................................................................................................................................................................................................................................................................................................................................................AAATCTATAATCAAGGCGATGGCACCTT.....2811.001100000
..................................................................................................................................................................................................................................CCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCACG..............................................................................................................................2811.001100000
..................................................................................................................................................................ATTGTGTG--C--AG--AGCCATCGA-------A-ATTCCAT--......................................................................................................................................................................................................2811.001100000
...............................................................................TGGT------TTGC----TGCGAACGATTGTCGG------------------------------ACG..................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................TGTCC--TAATTGTGTG--C--AG--AGCCATCGA-------A-A..............................................................................................................................................................................................................2911.001100000
................................................................................................................................................................................................................................................................................CCCACGTGG--------CGGAA-CGGAA-----CTGA--TCGGA........................................................................................2811.001100000
...............................................................................TGGT------TTGC----TGCGAACGATTGTCGG------------------------------ACGA.................................................................................................................................................................................................................................................................2811.001000010
.................................................................................................................................................................................................................................CCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCAC...............................................................................................................................2811.001100000
......................................................................................................................................................................TGTG--C--AG--AGCCATCGA-------A-ATTCCAT--TTTC..................................................................................................................................................................................................2811.001000010
..................................................................................................................................................................................................................................................................................................................TGA--TCGGATC-----GGATTGATGATTA---C---CCA..........................................................2711.001100000
.........................................................................................................................................................................G--C--AG--AGCCATCGA-------A-ATTCCAT--TTTCT.................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................CGTGTCC--TAATTGTGTG--C--AG--AGCCATC..........................................................................................................................................................................................................................2711.001000010
.....................................................................................................................................................................................................................TCCAATATCTAACCCCTC-AA--------ACATCG-----TC-C--------...........................................................................................................................................2911.001100000
...................................................................................................................................................................................................................................................CATCG-----TC-C--------ACCC-AACCCACGTGG--------CGGAA-.............................................................................................................2811.001100000
..................................................................TA-TGCAAAAGATTGGT------TTGC----TGCGAACG...........................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................TGTCC--TAATTGTGTG--C--AG--AGCCATC..........................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................................TATCTAACCCCTC-AA--------ACATCG-----TC-C--------ACCC-......................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................TGG--------CGGAA-CGGAA-----CTGA--TCGGATC-----GGA..............................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................TAAAATCTATAATCAAGGCGATGGCAC........2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................................TATAATCAAGGCGATGGCACCTTT....2411.001100000
.....................................................................................................................................................................................................................................TC-AA--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------...................................................................................................................2811.001100000
..........................................................................................TGC----TGCGAACGATTGTCGG------------------------------ACGAC................................................................................................................................................................................................................................................................2411.001100000
...................TATCG------------------------------------TAATCGTA-TGCAAAAGATTGGT------...........................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................TGG--------CGGAA-CGGAA-----CTGA--TCGGATC-----GGAT.............................................................................2811.001100000
.........................................................................................TTGC----TGCGAACGATTGTCGG------------------------------ACGACAAC.............................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................CCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCA................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................TC-C--------ACCC-AACCCACGTGG--------CGGAA-CGGAA-----C..................................................................................................2911.001100000
.................................................................................................................................................................................................................................CCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCA................................................................................................................................2711.001100000
.........................................................................................................................................................TGTCC--TAATTGTGTG--C--AG--AGCCATCGA-------.................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................GAA-----CTGA--TCGGATC-----GGATTGATGATTA---C---C............................................................2911.001000010
........................................................................................................GATTGTCGG------------------------------ACGACAACCGTGTCC--....................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................TGTGTG--C--AG--AGCCATCGA-------A-ATTCCAT--......................................................................................................................................................................................................2611.001100000
................................................................................................................G------------------------------ACGACAACCGTGTCC--TAATTGTGTG--C--A....................................................................................................................................................................................................................................2811.001100000
...................................................................................................................................................................TTGTGTG--C--AG--AGCCATCGA-------A-ATTCCAT--......................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................TTGTGTG--C--AG--AGCCATCGA-------.................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................TAACCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACC..................................................................................................................................2811.001100000
........................................................................................................................................................................................................................AATATCTAACCCCTC-AA--------ACATCG-----TC-C--------ACC........................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................CAATATCTAACCCCTC-AA--------ACATCG-----TC-C--------...........................................................................................................................................2711.001100000
...............................................................................................................................................................................................................................AACCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCCA................................................................................................................................2911.001100000
..............................................................................TTGGT------TTGC----TGCGAACGATTGTCGG------------------------------AC...................................................................................................................................................................................................................................................................2711.001100000
.........................................................................AAAGATTGGT------TTGC----TGCGAACGAT.........................................................................................................................................................................................................................................................................................................2411.001000001
.........................................................................................................................................................................................................................................................................ACCC-AACCCACGTGG--------CGGAA-CGGAA-----CTGA--.............................................................................................2911.001100000
................................................................................................................................................................TAATTGTGTG--C--AG--AGCCATCGA-------A-AT.............................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................CACGTGG--------CGGAA-CGGAA-----CTGA--TCGGA........................................................................................2611.001100000
.....................................................................................................................................................................................................................................TC-AA--------ACATCG-----TC-C--------ACCC-AACCCACGTG............................................................................................................................2711.001100000
..............................................................................................................................................................................................................................TAACCCCTC-AA--------ACATCG-----TC-C--------ACCC-AACCC.................................................................................................................................2911.001100000
....................................................................................................................................................AACCGTGTCC--TAATTGTGTG--C--AG--AGCCA............................................................................................................................................................................................................................2811.001000010
.........................................................................................TTGC----TGCGAACGATTGTCGG------------------------------ACGACAACC............................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................................................................................TCGGATC-----GGATTGATGATTA---C---CCACA--ACA...................................................2911.001100000
........................................................................................................................................................................................................................................AA--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------CG.................................................................................................................2811.001100000
............................................................................................................................................................................................................................TCTAACCCCTC-AA--------ACATCG-----TC-C--------ACCC-A.....................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................C-AA--------ACATCG-----TC-C--------ACCC-AACCCACGTGG--------C..................................................................................................................2811.001100000
droBip1
TTTG---TAT-TGTTT-T-AAACG------------------------------------TAATCGTA------TATAATGATTGGT--TTGC----TGCGCATGATTGTCATGG---ATCCTA---------GCAACTTTCCACGACAACCGTGCCA--TAAATATGTG--C--AG--AGCCATCAA-------A--ATTTCAC-TTACTAATCCAACATCTAATCTCCTTGAATC-------ACTC-----------------ACCC-AAATTACGTCA--------CGGAA-TGGAT-----CTGA--T------------GATTGATGATTA---C---CAAAA--ATAGGTTTACAAGTAGTTTTAAAATCTATTATCAAGGCGATGGCACCTTTATTGSizeHit CountTotal NormTotal
No Reads
droKik1
ATGT--GT---------------G------------------------------------TATACTTG--TGTAATCATTGGCTG-T--GACG----GGTACATGGTTGTTGTAG---ATCGTA---------G----TAGCTATGACAGCCATGTCC--A---------------------TTGC---------A-TTAGCATC-TTTCTAATCCAACGTCCAATCTCTT-CA----AACT--AATCCAACAATCTGCC-----AACTT------------------------CTGGAT-----CTGCGCCTGCCTC-----GGATGGAC----A---T---CTCCT--ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
droFic1
ATTATTATTTTATTTT-C-GAACG------------------------------------TACTAGTG--TGATTAGATTGGTTG-T----GT----GAAACATGGTTGTCGTAG---AGCTCGAAAGAAT-TA----ATTCTTTGACAACCATGTATGTTAAGTGTGTGTAAACGATCGCCCTCC---------T-TTTGAATC-CTTCTAATCCCGCGTAATATTTCTC-CA--CAA---TCAAC---------------------ATCAAC------------------------AT-----TTAACTCTGGATT-----GGATGAGC----G---A---CGTCT--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
droEle1
TTCG--GTT---GTGT-T-AAACG------------------------------------TACTCTTT--TGAATGTAATGGTT-------GT----GGCACATGGTTGTCCTAG---AGCTTG---------GA-ACTGTCTGTGACAACCATGTCC--TAAATGTGCA--C--ACGT-CGCTGT---------A-TACTTACC-TTTCTAATCCAATATCCCATTTT-T-TAACC-------AATC-----------------AACA------------------------------T-----CTAAATTTGGATC-----GGATGAAC----GT------CGCCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTT---------GTTT-T-AAACG------------------------------------TACTCTTT--TGAATGTAATGGTT-------GT----GGCACATGGTTGTCGTAG---AGCCTA---------CAAATTGTCTGTGGCAACCATGTAC--TAAATGTGAA--C--ACGGCCCCCGT---------T-TTCCTATC-TTGCTAATCCAATATCCCATTTCTT-TAACC-------AACC-----------------AACA-ACGTTACGTCGTCATATCGTGT------CGCTGAATTTATTTTGGATC-----GGATGAAC----G---C---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
droBia1
T-CG--ATTTT-GTTTTAAAAACG------------------------------------TACTCTTT-TTGAATAGAATGGTTG-TTGTTGT----GGCAAATGGTTGTCGTAG---AGCTTGCCAA--------ACAGTCTGTGACAACCATGTCC--TGTATGTGAA--C--ACACCCCCAGC---------C-TTCTGATC-TTGCTAATCCAACGTCCCCTCTCTT-TAATCAA---ACAACT-----------------AAA-----CA------------------------A-----CCAACTCTGGAAC-----GGATGAAC----TTCGA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
droTak1
TTTA---------TTT-T-GAACG------------------------------------TACTCTTT-TCTATTAGAATTGTTG-T--TTGTACCTGGAACATGGTTGTCGTAG---AGTTTGTGAAACTTTC----TTTCTGTGACAACCATGTCC--TAAATGTGAA--C--ACACCCGATGC---------A-TTCTGATC-TTTCTAATCCAACGTCCCGTTTCTT-TAACC-------AACC-----------------AA--------------------------------------TTAACTCTGGATC-----GGATGAAC----GCCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
droEug1
TTG---ATTTTCATTA------------------------------------------------------TAAATAGACTGATTG-T--TTGT----GGTTGTTGGTTGTCGTAG---A---------------------------ACAACCTTGTTC--TAAATGTAAA---ACCCAAACTAAG------------TACCCATCTTTGCTAATTCAATATCTTATCTCCT-TAATC-------AATC-----------------GAAA-A----------------------------C-----TTTCTTCTGGATT-----GGATAAAT----GACAA---CGTGA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotal
No Reads
dm3
TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGATTG-T--TTGT----GGCACATGATTGTCGTGGAGGAGCTT---------TCAA--TGTCTGCGACAATCATGTCC--TAAATGTGAA---ACACATACCCAGC---------A-TATGCATC-TTTCTAATCCAACGTCCATCTTCTC-CA----A---ACAACT-----------------AACC-AATCAACTTA-------------------ACTGAATCGTTTCTGGATCGAATCG---GAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................TGAATCGTTTCTGGATCGAATCG---GA...........................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................................................................................................................................................................................TCGAATCG---GAAC----GGCAA---CGTCA--ACAGG.................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................TGT----GGCACATGATTGTCGTGGAGGAGC...........................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................TCTGGATCGAATCG---GAAC----GGCAA---CGTCA--......................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................TCTGGATCGAATCG---GAAC----GGCAA---CGTC.........................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................T-----------------AACC-AATCAACTTA-------------------ACTGAATCGTT..............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTG-T--TTGT----GGCACATGATTGTCGTGGA................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................TAATCCAACGTCCATCTTCTC-CA----A---ACAAC.............................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTCTAATCCAACGTCCATCTTCTC-CA----......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGATTG-T--TTGT----GGCACATGATTT.......................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TC-CA----A---ACAACT-----------------AACC-AATCAACTTA-------------------AC.......................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................ACTGAATCGTTTCTGGATCGAATCG---G............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GAA---ACACATACCCAGC---------A-TATGCATC-TTTC..................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TGCGACAATCATGTCC--TAAATGTGAA---AC.....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGATTG-T--TTGT----GGCACATGATTGT......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................T--TTGT----GGCACATGATTGTCGTGGAGGA.............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................TC-CA----A---ACAACT-----------------AACC-AATCAACTTA-------------------A........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTATAATCAAGGCGATGGCACCTT.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................TTGACTAGAATGATTG-T--TTGT----GGCACA.............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................ACAAGTAGTTTTAAAATCTATAATC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TCGTGGAGGAGCTT---------TCAA--TGTCT.....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................TCTGGATCGAATCG---GAAC----GGCAA---CG...........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................CTATAATCAAGGCGATGGCA.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTTAAAATCTATAATCAAGGCGATGGCA.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AAC----GGCAA---CGTCA--ACAGGTTT..............................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................GT----GGCACATGATTGTCGTGGAGGA.............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CA--ACAGGTTTACAAGTAGTTTTAAAA..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTGTCGTGGAGGAGCTT---------TCAA--TGTC......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................TAAAATCTATAATCAAGGCGATGGCACC.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AATCTATAATCAAGGCGATG............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................TGATTG-T--TTGT----GGCACATGATTGTCGT...................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................AACTTA-------------------ACTGAATCGTTTCTGGATCGAA...................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGATTGTCGTGGAGGAGCTT---------TCAA--T.........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................TGCATC-TTTCTAATCCAACGTCCATC..................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TCA--ACAGGTTTACAAGTAGTTTTAAAATC............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TAAAATCTATAATCAAGGCGATGGCAC........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...G--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGAC..........................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CACATGATTGTCGTGGAGGAGCTT---------T...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................TGTCGTGGAGGAGCTT---------TCAA--TG........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................AACGTCCATCTTCTC-CA----A---ACAACT-----------------...........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGCATC-TTTCTAATCCAACGTCCATCTTC...............................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................GT----GGCACATGATTGTCGTGGAG...............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTATAATCAAGGCGATGGCACCTTTAC..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TTGT----GGCACATGATTGTCGTGG.................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................ATCAAGGCGATGGCACCTTT....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTT-TTGACTAGAATC...................................................................................................................................................................................................................................................................................................................................15200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGGTTG-T--TTGT----GGCACATGATTGTCGTGGCGGAGCTA---------TCCA--TGTCTGCGACAATCATGTCC--TAAATGTGAA---ACACATATCCAGC---------A-TATCCATA-TTTCTAATCCAACGTCCATCTTCTC-CA----A---ACAACT-----------------AAC-----T-----A-------------------ACTGAATCGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................CTGAATCGTTTCTGGATC-----GGA..............................................................................2111.00100000001000000000
droSec2
TTCG--ATT-TCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGGTTG-T--TTG-----GGCACATGATTGTCGCGGTGGAGCTA---------TCCA--TGTCTGCGACAATCATGTCC--TAAATGTGAA---ACACATATCCAGC---------A-TATCCATA-TTTCTAATCCAACGTCCATCTTCTC-CA----A---ACCACT-----------------AAC-----T-----A-------------------ACTGAATCGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTTTTTGACTAGAATGGTTGTT--TTGT----GGCACATGGTTGTCGTGG---AGCTT---------TCCA----GCTGCGACAATCATGTCC--TAAATGTGAA--C--ACATACCCAGC---------A-TACACATC-TTTCTAATCCAACGTACATCTTCTC-CA----A---TCAACT--------C--------AACC-AATCAACTCAA-------------CCA--A-TCAA-CGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................AA-------------CCA--A-TCAA-CGTTTCTGG.........................................................................................1911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................TATAATCAAGGCGATGGCACCTTTAC..2611.00101000000000
droEre2
TTCG--ATTTTCGTTT-G-AAACG------------------------------------TACTCTTT-TTGACTAGAATGGTTG-T--TTGT----GGCACATGGTTGTCGTGG---AGCAC---------TCCG--TATCGGCGGCAACCATGTCC--TAAATGTGAA--C--ACATACCCAGC---------A-TACCCAGC-TTTCTAATCCAACGTCCATCTTCTC-CA----A---CCAACC-----------------AACC-AATCA------------------------ACTGAATCGTTTCTGGATC-----GGATGAAC----GGCAA---CGTCA--ACAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................TGGATC-----GGATGAAC----GGCAA---CGTCA--ACA...................................................2716.0060000006
..........................................................................................................................................................................................................................................................................................................................GATC-----GGATGAAC----GGCAA---CGTCA--ACAG..................................................2611.0011000000
dp5
TTTT--GTATTCGTAC-T-ATACATAGACTGTGGTAGGGGCTCCTTCGAGCCCATGTAAA-------------------------------------------------------------------------------------------------TATT-AATGTGT----------AACTAGCAAAAGCTGCATTGCGAATCTTTTCTAATCCAAC--CCATTCTTTC-CA----A-CT--CTTCAATCGACCCGCCGTGGAA--A-------------------------CCGAAA-----CTGAAACTGGATT-----GGATCTAC----ATCTACATCGTCCACATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................TTTACAAGTAGTTTTAAAC..............................1911.0010100000000
droPer2
TGTG--GTAG---------------------------GGGCTCCTTCGAGCCCATGTAAA-------------------------------------------------------------------------------------------------TATT-AATGTGT----------AACTAGCAAAAGCTGCATTGCGAATCTTTTCTAATCCAAC--CCATTCTTTC-CA----A-CT--CTTCAATCGACCCGCCGTGGAA--A-------------------------CCGAAA-----CTGAAACTGGATT-----GGATCTAC----ATCTACATCGTCCACATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTTTACAAGTAGTTTTAAAATCTATAATCAAGGCGATGGCACCTTTACTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:03 AM