ID:

dan_1038

 Coordinate:

scaffold_12948:346749-346899 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.4 -13.3

Flybase annnotation

CDS [Dana\GF21581-cds]; exon [dana_GLEANR_5080:6]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTTATAGGCTCATTTTTTATGCTCAACCTAGTTCTTGGTGTCTTAAGTGGGTAAGTACGACTGCACCGTTCTAAAGTCTTGTACACCAGTTCACGTTCGTACTTCTTATGATTTGGTTTATTCTAATCTGGATCTGGTTTTCTGATACTGCATACATATCTTTATGTCCCTCCAAATGATGATTTTAACGAAGATTGGATGTCAATTAACCATTAAGATAATTACGATTTGAGATCTGAGAAACGCCTTAA
*************************************************************...((((.((((.......(((.(((((.(((...............))).))))).))).......))))..))))...............(((((....)))))..................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V039
embryo
 V105
male body		 V055
head
 M058
embryo
...........................................TAAGTGGGTAAGTACGACTGCACCGT...................................................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0
.............................................................TGCACCGTTCTAAAGTCTTGTACACCAG.................................................................................................................................................................. 28 0 1 4.00 4 4 0 0 0 0 0
..............................................................................................................................................................................................................................TACGATTTGAGATCTGAGAAACGCCT... 26 0 1 4.00 4 4 0 0 0 0 0
.................................................................................TACACCAGTTCACGTTCGTACTTCTTA............................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0
.......................................................TACGACTGCACCGTTCTAAAGTCTTG.......................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
........................................TCTTAAGTGGGTAAGTACGACTGC........................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.......................................................................TAAAGTCTTGTACACCAGTTCACGTTCG........................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0
.........TCATTTTTTATGCTCAACCTAGTTC......................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
...........................................................................GTCTTGTACACCAGTTCACGTTCGTAC..................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................TATTCTAATCTGGATCTGGTTTTCTGAA......................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0
.......................................................................TAAAGTCTTGTACACCAGTTCACGTT.......................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................CACGTTCGTACTTCTTATGATTTGGTT..................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................TCTTTATGTCCCTCCAAATGATGATTT.................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................................................TGTCCCTCCAAATGATGATTTTAACGAA........................................................... 28 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................TAACGAAGATTGGATGTCAATTAACCAT...................................... 28 0 1 2.00 2 1 0 0 1 0 0
...................................................TAAGTACGACTGCACCGTTCTAAAGTC............................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
..............................................................................TTGTACACCAGTTCACGTTCGTACTTCT................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0 0 0
...........................................TAAGTGGGTAAGTACGACTGCACCGTTC.................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................TGGATCTGGTTTTCTGATACTGCATACA............................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
....................................................................................ACCAGTTCACGTTCGTACTTCTTATGATT.......................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0
..................................................................CGTTCTCGGGTCTTGTACAC..................................................................................................................................................................... 20 3 3 1.33 4 1 2 0 0 0 1
............................................................................................................................................................TATCTTTATGTCCCTCCAAATGATGA..................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................TATCTTTATGTCCCTCCAAATGATGAT.................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................TGCACCGTTCTAAAGTCTTTTACACCAG.................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................GGTTTATTCTAATCTGGATCTGGTT................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................TATTCTAATCTGGATCTGGTTTTCTGA.......................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...................TGCTCAACCTAGTTCTTGGTGTCTTAAG............................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TAACGAAGATTGGATGTCAATC............................................ 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................TACTGCATACATATCTTTATGTCCCTC............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TTTGGTTTATTCTAATCTGGATCTGGTT................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTGGTTTATTCTAATCTGGATCTGGT................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................TTGTACACGAGTTCACGTTCGTACTTCT................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
................................TCTTGGTGTCTTAAGTGGGTAAGTACGAC.............................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
...................................................................................CACCAGTTCACGTTCGTACTTCTTAT.............................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................CCATTAAGATAATTACGATTTGAGATC............... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................TTAAGTGGGTAAGTACGACTGCACCG....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................CACGTTCGGACTTCTTATGATTTGGTT..................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...................................TGGTGTCTTAAGTGGGTAAGTACG................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................AGTCTTGTGCACCAGTTCACGTTCGTAC..................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................TCTAATCTGGATCTGGTTTTCTGATAC....................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................GTCTTGTACACCAGTTCACGTTCGTACT.................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.............TTTTTATGCTCAACCTAGTTCTTGGTG................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................TGCACCGTTCTAAAGTCTTGTACACCAGT................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
..........................................................................AGTCTTGTACACCAGTTCACGTTCGTA...................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................TACGATTTGAGATCTGAGAAACGCCTTA. 28 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................TAATCTGGATCTGGTTTTCTGATACTGCA................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................TGATGATTTTAACGAAGATTGGATGTC................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................TACTGCATACATATCTTTATGTCCCTCCA............................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TTCTAATCTGGATCTGGTTTTCTGATAC....................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................TGCATACAGATCTTTATGTCCCTCCAAA........................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.......................................................................TAAAGTCTTGTACACCAGTTCACGTTC......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................TTCTAAAGTCTTGTACACCAGTTCACGTT.......................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.............................................................TGCACCGTTCTAAAGTCTTGTACACC.................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GATCTGGTTTTCTGATACTGCATACA............................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TACGATTTGAGATCTGAGAAACGCCTT.. 27 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTGGTTTATTCTAATCTGGATCTGGTT................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................TCTTGTACACCAGTTCACGTTCGTACT.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
................................................................ACCGTTCTAAAGTCTTGTACACCAGTT................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
........................................TCTTAAGTGGGTAAGTACGACTGCA.......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................TCTTGTACGCCAGTTCACGTTCGTACT.................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................TACTGCATACATATCTTTATGTCCCTCC.............................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
...............................................................................TGTACACCAGTTCACGTTCGTACTTC.................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.......................................GTCTTAAGTGGGTAAGTACGACTGC........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................GTGTACACCAGTTCACGTTCGTACTTCT................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
........................................................ACGACTGCACCGTTCTAAAGTCTTGTA........................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
........................................TCTTAAGTGGGTAAGTACGACTGCAC......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..................................TTGGTGTCTTAAGTGGGTAAGTACGAC.............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................TCTTTATGTCCCTCCAAATGATGATT................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................TCTGGTTTTCTGATACTGCATACATA............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GATTTGGTTTATTCTAATCTGGATC..................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
......................................TGTCTTAAGTGGGTAAGTACGACTGCAC......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................................TGGCTAAGTACGGCTGCACCGCTC.................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
...................................TGGTGTCTTAAGTGGGTAAGTACGACTG............................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
............................TAGTTCTTGGTGTCTTAAGTGGGTAA..................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TTACGATTTGAGATCTGAGAAACGCC.... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TGGTTTATTCTAATCTGGATCTGGTT................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................CCCTCCAAATGATGATTTTAACGAAGAT........................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACGTTCGTACTTCTTATGATTTGGTT..................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................GCACCGTTCTAAAGTCTTGTACACCAG.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................CCAGTTCACGTTCGTACTTCTTATGAT........................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................AGTCTTGTACACCAGTTCACGTTCGTAC..................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................CTAAAGTCTTGTACACCAGTTCACG............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................TACGACTGCACCGTTCTAAAGTCTTGTA........................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TTCACGTTCGTACTTCTTATGATTTGGTT..................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TTTGGGCTCTGAGGAACGCC.... 20 3 2 0.50 1 0 0 0 0 1 0
...............................................................................................................................................................................ATGATTATGTTAACGAAGCTT....................................................... 21 3 2 0.50 1 0 0 1 0 0 0
...................................................................GTTCTCGGGTCTTGTACAC..................................................................................................................................................................... 19 3 14 0.21 3 1 1 0 0 0 1
.......................................................................TAAAGACTTTTACACCAGT................................................................................................................................................................. 19 2 5 0.20 1 0 1 0 0 0 0
.............................................................................................................................................................................................GAAGAATGGATATCAATTA........................................... 19 2 5 0.20 1 0 0 1 0 0 0
.........................................................................................................................................................................CTCCAAGTGATGATTTGA................................................................ 18 2 7 0.14 1 0 0 0 0 1 0

Anti-sense strand reads

CAATATCCGAGTAAAAAATACGAGTTGGATCAAGAACCACAGAATTCACCCATTCATGCTGACGTGGCAAGATTTCAGAACATGTGGTCAAGTGCAAGCATGAAGAATACTAAACCAAATAAGATTAGACCTAGACCAAAAGACTATGACGTATGTATAGAAATACAGGGAGGTTTACTACTAAAATTGCTTCTAACCTACAGTTAATTGGTAATTCTATTAATGCTAAACTCTAGACTCTTTGCGGAATT
******************************************************************...((((.((((.......(((.(((((.(((...............))).))))).))).......))))..))))...............(((((....)))))..................************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 V039
embryo
.....................................................................CGATTTCTGAAAATGTGGTCAA................................................................................................................................................................ 22 3 2 0.50 1 1 0 0
...........................GATCAACACCCACAGAATACA........................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0
...............................................................................................................................................CTATCACGTATGTAAAGGAA........................................................................................ 20 3 8 0.13 1 1 0 0
..............AAAATACGATTTGGAACTAG......................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 1
........................TTGCGTCAAGCACCACAGA................................................................................................................................................................................................................ 19 3 14 0.07 1 0 1 0
..............AAAAAACGATTAGGATCAAGA........................................................................................................................................................................................................................ 21 3 14 0.07 1 1 0 0
..............................................................................................................AAAACCCAACAAGATTAGAC......................................................................................................................... 20 3 19 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:346699-346949 - dan_1038 GTTATAGGCTCATTTTTTATGCTCAACCTAGTTCTTGGTGTCTTAAGTGGGTAAGTA--CGACT-GCAC------CGTTCT------------------AA-AG--TCTTGTACACCAGTTCACGTT-CG----------------TACTT-----CTTATGATTTGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---ATACTGCATACATATCTTT-ATGTCCCTCCAA-A--TGATGATTTTAA-------------C-----------G-----------------------AAGATT------------------------------------------------------------------------------------------------------------------------------------------GGATGTCAATTAACCATTAAGAT----AATTA-CGA-TTTG-AGATCTGAGA---AACGCCTTAA
droBip1 scf7180000395643:10624-10877 + GTTATAGGCTCATTTTTTATGCTCAACCTAGTTCTTGGTGTCTTGAGTGGGTAAGTA--CAGCAGCAGC------GGTT-T----------------GAA---G--ACTTGTACACCAGTTCACGTT-CG----------------TACTC-----CTTATGATTTTGGTT--AATTTTTATCT-----------------------------------------------GA-A------TC-TGGTTTTCTG---ATACTGCATACATATATTT-ATGTCCCACTAA-T--CGATGATTTCAAATCCAGTGGTATCC-----------A--------------------------------------------------------GTGGTC---------------------------------------------------------------------------------------------------------GGATATCAACTAATCATTAAGATTCA------------------ATCTGCGA---AATGTCTTAA
droKik1 scf7180000302441:104638-104975 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTAAGTGGGTAAGTTTCGAACTATAAT------TCAATTATTTCTGTGTA---ACGGAG-CCAGGTTTCTACACCAGTTCGCCTTATGATTTCTACTTTCTACCTTCTACTTG-CTTATGATTTTGATT------CT------------------------------------------------------------------GATTTGAAAATAATACTGCATACATATATGTTATAT-ATATATATA--TGT-----------------------GGAGG----------------------------------------------------------------------------ACATATGCATATATGTACATATATAAGTGTT----TGGGCTCTGGGCATGCGATTGCAGAGTGCA-AAAACAAAGAAAG---AAAATAAAAACCAATCGAATGTAAAGTATTC---------CAAATT------------------GCCA---A--GCTATAT
droFic1 scf7180000454073:109376-109625 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------CGCTAAAT-------TATCAATGAAG-CC--ATTTCTACACCAGTTCACATTATC----------------TTATA-----CTTATGATTTCGATT--ACTTCCGTTCG------------------------------------------------------AAAAG-GGATTTGAAA---ATACTGCATACATATGTTT-CGATCATTTCGAAG---------------------AGTCGCG-----------AGTTCTT--CAATGTCAAATTGTAAAGATCAGATGTAAAGA----------------AACGCCAGATTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491242:237775-237952 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCATGAAT------CGCTTTAC-------TGTCAATGAAT-CC--ATTTATACACCGGTTCACATTACG----------------TTCAA-----CTTATCAGTTCGTTT--ACTTTCGTTAA------------------------------------------------------TTAAG-GGATTTGAAA---ATACTGCATACATATGTTT-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000763611:90459-90647 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCACGAAT------CGCTTTACTC-------TCAATGAAG-TC--ATTTCTACACCAGTTCACACTATG----------------TTCTA-----CTTATGATTTCGATT--ACTTCTGTTAA------------------------------------------------------ATAAG-GGATTTGAAA---ATACAGCATACATATGTTT-AGATCACATCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:640021-640380 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCATGAAA------CGTTTTAT-T-----TATCGATGAAG-CC--ATTTATACACCAGTTCACAT-ATC----------------TTCTT---ATCTTATCATTT-GATT--AATTATAAAAT-----------------------------------------------GA-A-AAAAAAGAGGTTTTGAAA---ATACTGCATACATATGTTT-AGAGAAGT----------------------------GTAACCAGATG-------GT--TTACCTATGT--ACTTGTAAAGATAAATTGTAAA----------------------CCAGATTATACATATGTA----------TATATCGGTCTTGCGTAGAGCTCCGTGCATGCGCATACAGGGTGCG-A-----------------AACAAAGTCAATTTGGCTGTAAATTATTC---------GAAATTT--TC--CCTGACGACTGG----CCA----TTGAA
droTak1 scf7180000414222:39303-39674 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCACGAAT------CGCTTAAT-T-----TATCGATAAAG-AC--ATTTATACACCAGTTCACATT-TC----------------TTTTA-----CTTATCATTTTTGTT--TCTTCCGTTCA-----GAAA---------------------------------------------AAAAA-GGTTTTGAAA---ATACTGCATACATATGTTT-AAATAATTTTGATA--TGA-----------------------AGATG-------GT--TTACC-ACAT--AATTGTAAAGATAAAAA----A---------AAGTGCCCAGTTGCCAGATTATACATATGTA----------TATATCGGTTTTACGTAGAGCTTCTTGCATGCGCGTACAGGGAGCC-A-----------------ATTAAGGTAAATTTGACTGTAAATTAATC---------GAAATTTATTGA-TTTG-AGGCCAG---AGGAG---TAAAA
droEug1 scf7180000409008:1263421-1263647 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCACAAAT------CGATATAATT-----TATCGATAAAA-CC--ATTTCTACACCAGTTCACATTCAA----------------TTTTG-----ATTATGATTTAAATT--ACTTATGTTTA-----T---------------------------GAAATCAATATTTTGAAA------TG-GGATTTGAAA---ATACTGCATACATATGTTT-AGATTATTTCGATAAACGATATTTTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAA
dm3 chrX:11870349-11870485 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATTT-----TAACGATGAAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATAATTTCGATT--ACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:11245946-11246177 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTCAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATTT-----TGCCGATGAAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATGATTTCGATT--ACTTCTGTTCTACTGAGAAAAAAAAGTAAAAAAGAAAAAATTATGGAA-----------AAA------TG-GGATCTGAAA---ATACTGCATACATATGTTT-AGATCATTTCCATA--TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_53:86893-87037 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTCAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATTT-----TGCCGATGAAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATGATTTCGATT--ACTTCTGTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:14831137-14831560 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATGT-----TAACGATGAAGCCC--ACTTCTACACCAGTTCACATTACG----------------TTCTA-----TTTATGATTTCAATTCGATTTATGTTGA-----GTAAAAGATG-----AAGAAAAAAAAATGGTT-----------AAA------TG-GGATCTGAAA---ATACTGCATACATATGTTT-AGATCATTTCGATT--TGG-----------------------A-ATGTCGTCGCGT--TTAA--ATAT--TTTTGTAAAGATTAAATGTAAAGAGAGTGTCGAGTGTCCAATTGCCAGATTATACATATGTA----------TATATCGGTTTTACGTAGAGCTACGTGCATG----------GTGTCAAAAAAATAAAAAGGTAAAAATAAAGTCAATTTGGCTGTAAATTATGA---------AAAAT--ATTGCGCCTG-TGACCGG---ACGA----TTGAA
droEre2 scaffold_4690:3307613-3307833 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------TGCATTATTT-----TATCGATGCAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATGATTTCGATTCGACTTCTGTTGA-----GAAAAA-AAGTAC--AAGTA-CAAAATTGGTT-----------AAA------TG-GGATCTGCAA---ATACTGCATACATATGTTT-AGATCACTTCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:9984955-9985010 + GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_22:248685-248740 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:10289819-10289874 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTTCTGAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:8704317-8704372 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTTTTAAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:12709007-12709141 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGTT--GGCCTTGAAC------TTGTC----TTTGAGTACCAACACAC-AG--TCTTCTGCCACAGTTTGTG---------------------TTTAAGTTGTTTTTTGATTTGATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:11447547-11447718 - GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGTT--GACCTGAAAACTTTATTGTTTTATTT-----T-----TGAAA-TC--------ACACTGGTTACCATTATT------------TAATTTCAATTTG------------------AT---------------------------------------------ATTATTGATTTGAATTGGGTATA-AGATTTCACC---ATAACATATACATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GTTATAGGCTCATTTTTTATGCTCAACCTAGTTCTTGGTGTCTTAAGTGGGTAAGTA--CGACT-GCAC------CGTTCT------------------AA-AG--TCTTGTACACCAGTTCACGTT-CG----------------TACTT-----CTTATGATTTGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---ATACTGCATACATATCTTT-ATGTCCCTCCAA-A--TGATGATTTTAA-------------C-----------G-----------------------AAGATT------------------------------------------------------------------------------------------------------------------------------------------GGATGTCAATTAACCATTAAGAT----AATTA-CGA-TTTG-AGATCTGAGA---AACGCCTTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................TAAGTGGGTAAGTA--CGACT-GCAC------CGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.005500000
...............................................................T-GCAC------CGTTCT------------------AA-AG--TCTTGTACACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.004400000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CGA-TTTG-AGATCTGAGA---AACGCCT...2614.004400000
...............................................................................................................TACACCAGTTCACGTT-CG----------------TACTT-----CTTA...................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
.......................................................TA--CGACT-GCAC------CGTTCT------------------AA-AG--TCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
........................................TCTTAAGTGGGTAAGTA--CGACT-GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
................................................................................T------------------AA-AG--TCTTGTACACCAGTTCACGTT-CG----------------.................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
.........TCATTTTTTATGCTCAACCTAGTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
.......................................................................................................G--TCTTGTACACCAGTTCACGTT-CG----------------TAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
..........................................................................................................................................................................T--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---AA................................................................................................................................................................................................................................................................................................................2812.002200000
................................................................................T------------------AA-AG--TCTTGTACACCAGTTCACGTT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.........................................................................................................................CACGTT-CG----------------TACTT-----CTTATGATTTGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
...............................................................................................................................................................................................................................................................................TCTTT-ATGTCCCTCCAA-A--TGATGATTT.....................................................................................................................................................................................................................................................................2712.002200000
......................................................................................................................................................................................................................................................................................TGTCCCTCCAA-A--TGATGATTTTAA-------------C-----------G-----------------------AA...............................................................................................................................................................................................................2812.002200000
..............................................................................................................................................................................................................................................................................................................TAA-------------C-----------G-----------------------AAGATT------------------------------------------------------------------------------------------------------------------------------------------GGATGTCAATTAACCAT................................................2812.002100010
...................................................TAAGTA--CGACT-GCAC------CGTTCT------------------AA-AG--TC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
............................................................................................................TTGTACACCAGTTCACGTT-CG----------------TACTT-----CT.....................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...........................................TAAGTGGGTAAGTA--CGACT-GCAC------CGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
.......................................................................................................................................................................................T-----------------------------------------------GG-A------TC-TGGTTTTCTG---ATACTGCATACA......................................................................................................................................................................................................................................................................................................2812.002200000
..................................................................................................................ACCAGTTCACGTT-CG----------------TACTT-----CTTATGATT..............................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.............................................................................................................................................................................................................................................................................TATCTTT-ATGTCCCTCCAA-A--TGATGA........................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................TATCTTT-ATGTCCCTCCAA-A--TGATGAT.......................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................GGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTT..........................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................T--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---A.................................................................................................................................................................................................................................................................................................................2711.001100000
...................TGCTCAACCTAGTTCTTGGTGTCTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................TAA-------------C-----------G-----------------------AAGATT------------------------------------------------------------------------------------------------------------------------------------------GGATGTCAATC......................................................2211.001100000
..................................................................................................................................................................................................................................................................TACTGCATACATATCTTT-ATGTCCCTC.....................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................TTTGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTT..........................................................................................................................................................................................................................................................................................................................2811.001100000
....................................................................................................................................................................TTGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGT...........................................................................................................................................................................................................................................................................................................................2611.001100000
................................TCTTGGTGTCTTAAGTGGGTAAGTA--CGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.................................................................................................................CACCAGTTCACGTT-CG----------------TACTT-----CTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTAAGAT----AATTA-CGA-TTTG-AGATC..................2711.001100000
..........................................TTAAGTGGGTAAGTA--CGACT-GCAC------CG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................TGGTGTCTTAAGTGGGTAAGTA--CG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................TCTAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---ATAC..............................................................................................................................................................................................................................................................................................................2711.001100000
.......................................................................................................G--TCTTGTACACCAGTTCACGTT-CG----------------TACT.............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............TTTTTATGCTCAACCTAGTTCTTGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............................................................T-GCAC------CGTTCT------------------AA-AG--TCTTGTACACCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
......................................................................................................AG--TCTTGTACACCAGTTCACGTT-CG----------------TA...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CGA-TTTG-AGATCTGAGA---AACGCCTTA.2811.001100000
..................................................................................................................................................................................TAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---ATACTGCA..........................................................................................................................................................................................................................................................................................................2911.001100000
.....................................................................................................................................................................................................................................................................................................TGATGATTTTAA-------------C-----------G-----------------------AAGATT------------------------------------------------------------------------------------------------------------------------------------------GGATGTC..........................................................2711.001100000
..................................................................................................................................................................................................................................................................TACTGCATACATATCTTT-ATGTCCCTCCA...................................................................................................................................................................................................................................................................................2911.001100000
...............................................................................................................................................................................TTCTAATCT-----------------------------------------------GG-A------TC-TGGTTTTCTG---ATAC..............................................................................................................................................................................................................................................................................................................2811.001100000
................................................................................T------------------AA-AG--TCTTGTACACCAGTTCACGTT-C..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................TTCT------------------AA-AG--TCTTGTACACCAGTTCACGTT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...............................................................T-GCAC------CGTTCT------------------AA-AG--TCTTGTACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................................................................G-A------TC-TGGTTTTCTG---ATACTGCATACA......................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CGA-TTTG-AGATCTGAGA---AACGCCTT..2711.001100000
....................................................................................................................................................................TTGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTT..........................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................TCTTGTACACCAGTTCACGTT-CG----------------TACT.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................AC------CGTTCT------------------AA-AG--TCTTGTACACCAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................................TCTTAAGTGGGTAAGTA--CGACT-GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................TACTGCATACATATCTTT-ATGTCCCTCC....................................................................................................................................................................................................................................................................................2811.001100000
.............................................................................................................TGTACACCAGTTCACGTT-CG----------------TACTT-----C......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................GTCTTAAGTGGGTAAGTA--CGACT-GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................................................A--CGACT-GCAC------CGTTCT------------------AA-AG--TCTTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................................TCTTAAGTGGGTAAGTA--CGACT-GCAC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................TTGGTGTCTTAAGTGGGTAAGTA--CGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............................................................................................................................................................................................................................................................................TCTTT-ATGTCCCTCCAA-A--TGATGATT......................................................................................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................................................................................................TC-TGGTTTTCTG---ATACTGCATACATA....................................................................................................................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................GATTTGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-...............................................................................................................................................................................................................................................................................................................................2511.001100000
......................................TGTCTTAAGTGGGTAAGTA--CGACT-GCAC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................TGGTGTCTTAAGTGGGTAAGTA--CGACT-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................TAGTTCTTGGTGTCTTAAGTGGGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-CGA-TTTG-AGATCTGAGA---AACGCC....2611.001100000
.....................................................................................................................................................................TGGTTT--A-TTCTAATCT-----------------------------------------------GG-A------TC-TGGTT..........................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................CCCTCCAA-A--TGATGATTTTAA-------------C-----------G-----------------------AAGAT............................................................................................................................................................................................................2811.001100000
........................................................................................................................TCACGTT-CG----------------TACTT-----CTTATGATTTGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................GCAC------CGTTCT------------------AA-AG--TCTTGTACACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................................................CCAGTTCACGTT-CG----------------TACTT-----CTTATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................AG--TCTTGTACACCAGTTCACGTT-CG----------------TAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................CT------------------AA-AG--TCTTGTACACCAGTTCACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................TA--CGACT-GCAC------CGTTCT------------------AA-AG--TCTTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................TTCACGTT-CG----------------TACTT-----CTTATGATTTGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droBip1
GTTATAGGCTCATTTTTTATGCTCAACCTAGTTCTTGGTGTCTTGAGTGGGTAAGTA--CAGCAGCAGC------GGTT-T----------------GAA---G--ACTTGTACACCAGTTCACGTT-CG----------------TACTC-----CTTATGATTTTGGTT--AATTTTTATCT-----------------------------------------------GA-A------TC-TGGTTTTCTG---ATACTGCATACATATATTT-ATGTCCCACTAA-T--CGATGATTTCAAATCCAGTGGTATCC-----------A--------------------------------------------------------GTGGTC---------------------------------------------------------------------------------------------------------GGATATCAACTAATCATTAAGATTCA------------------ATCTGCGA---AATGTCTTAASizeHit CountTotal NormTotal
No Reads
droKik1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTAAGTGGGTAAGTTTCGAACTATAAT------TCAATTATTTCTGTGTA---ACGGAG-CCAGGTTTCTACACCAGTTCGCCTTATGATTTCTACTTTCTACCTTCTACTTG-CTTATGATTTTGATT------CT------------------------------------------------------------------GATTTGAAAATAATACTGCATACATATATGTTATAT-ATATATATA--TGT-----------------------GGAGG----------------------------------------------------------------------------ACATATGCATATATGTACATATATAAGTGTT----TGGGCTCTGGGCATGCGATTGCAGAGTGCA-AAAACAAAGAAAG---AAAATAAAAACCAATCGAATGTAAAGTATTC---------CAAATT------------------GCCA---A--GCTATATSizeHit CountTotal NormTotal
No Reads
droFic1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------CGCTAAAT-------TATCAATGAAG-CC--ATTTCTACACCAGTTCACATTATC----------------TTATA-----CTTATGATTTCGATT--ACTTCCGTTCG------------------------------------------------------AAAAG-GGATTTGAAA---ATACTGCATACATATGTTT-CGATCATTTCGAAG---------------------AGTCGCG-----------AGTTCTT--CAATGTCAAATTGTAAAGATCAGATGTAAAGA----------------AACGCCAGATTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCATGAAT------CGCTTTAC-------TGTCAATGAAT-CC--ATTTATACACCGGTTCACATTACG----------------TTCAA-----CTTATCAGTTCGTTT--ACTTTCGTTAA------------------------------------------------------TTAAG-GGATTTGAAA---ATACTGCATACATATGTTT-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCACGAAT------CGCTTTACTC-------TCAATGAAG-TC--ATTTCTACACCAGTTCACACTATG----------------TTCTA-----CTTATGATTTCGATT--ACTTCTGTTAA------------------------------------------------------ATAAG-GGATTTGAAA---ATACAGCATACATATGTTT-AGATCACATCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCATGAAA------CGTTTTAT-T-----TATCGATGAAG-CC--ATTTATACACCAGTTCACAT-ATC----------------TTCTT---ATCTTATCATTT-GATT--AATTATAAAAT-----------------------------------------------GA-A-AAAAAAGAGGTTTTGAAA---ATACTGCATACATATGTTT-AGAGAAGT----------------------------GTAACCAGATG-------GT--TTACCTATGT--ACTTGTAAAGATAAATTGTAAA----------------------CCAGATTATACATATGTA----------TATATCGGTCTTGCGTAGAGCTCCGTGCATGCGCATACAGGGTGCG-A-----------------AACAAAGTCAATTTGGCTGTAAATTATTC---------GAAATTT--TC--CCTGACGACTGG----CCA----TTGAASizeHit CountTotal NormTotal
No Reads
droTak1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCACGAAT------CGCTTAAT-T-----TATCGATAAAG-AC--ATTTATACACCAGTTCACATT-TC----------------TTTTA-----CTTATCATTTTTGTT--TCTTCCGTTCA-----GAAA---------------------------------------------AAAAA-GGTTTTGAAA---ATACTGCATACATATGTTT-AAATAATTTTGATA--TGA-----------------------AGATG-------GT--TTACC-ACAT--AATTGTAAAGATAAAAA----A---------AAGTGCCCAGTTGCCAGATTATACATATGTA----------TATATCGGTTTTACGTAGAGCTTCTTGCATGCGCGTACAGGGAGCC-A-----------------ATTAAGGTAAATTTGACTGTAAATTAATC---------GAAATTTATTGA-TTTG-AGGCCAG---AGGAG---TAAAASizeHit CountTotal NormTotal
No Reads
droEug1
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCACAAAT------CGATATAATT-----TATCGATAAAA-CC--ATTTCTACACCAGTTCACATTCAA----------------TTTTG-----ATTATGATTTAAATT--ACTTATGTTTA-----T---------------------------GAAATCAATATTTTGAAA------TG-GGATTTGAAA---ATACTGCATACATATGTTT-AGATTATTTCGATAAACGATATTTTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAASizeHit CountTotal NormTotal
No Reads
dm3
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATTT-----TAACGATGAAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATAATTTCGATT--ACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................TTCTTGGTGTCCTTAGTGGGTAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..TATAGGCTCATTTTTTATGCTCAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTTGGTGTCCTTAGTGGGTAAGTT--GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TAACGATGAAG-CC--ACTTCTACACCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................CTTAGTGGGTAAGTT--GATCGCGAAT------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCTTGGTGTCCTTAGTGGGTAAGTT--GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................CTTAGTGGGTAAGTT--GATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
...ATAGGCTCATTTTTTATCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTCAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATTT-----TGCCGATGAAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATGATTTCGATT--ACTTCTGTTCTACTGAGAAAAAAAAGTAAAAAAGAAAAAATTATGGAA-----------AAA------TG-GGATCTGAAA---ATACTGCATACATATGTTT-AGATCATTTCCATA--TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................AAA------TG-GGATCTGAAA---G.................................................................................................................................................................................................................................................................................................................1690.11100000001000000000
droSec2
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTCAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATTT-----TGCCGATGAAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATGATTTCGATT--ACTTCTGTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------TGCTTTATGT-----TAACGATGAAGCCC--ACTTCTACACCAGTTCACATTACG----------------TTCTA-----TTTATGATTTCAATTCGATTTATGTTGA-----GTAAAAGATG-----AAGAAAAAAAAATGGTT-----------AAA------TG-GGATCTGAAA---ATACTGCATACATATGTTT-AGATCATTTCGATT--TGG-----------------------A-ATGTCGTCGCGT--TTAA--ATAT--TTTTGTAAAGATTAAATGTAAAGAGAGTGTCGAGTGTCCAATTGCCAGATTATACATATGTA----------TATATCGGTTTTACGTAGAGCTACGTGCATG----------GTGTCAAAAAAATAAAAAGGTAAAAATAAAGTCAATTTGGCTGTAAATTATGA---------AAAAT--ATTGCGCCTG-TGACCGG---ACGA----TTGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTAGAGCTACGTGCATG----------GT.....................................................................................................2411.00100000010000
droEre2
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCCTTAGTGGGTAAGTT--GATCGCGAAT------TGCATTATTT-----TATCGATGCAG-CC--ACTTCTACACCAGTTCACATTATG----------------TTCTA-----CTTATGATTTCGATTCGACTTCTGTTGA-----GAAAAA-AAGTAC--AAGTA-CAAAATTGGTT-----------AAA------TG-GGATCTGCAA---ATACTGCATACATATGTTT-AGATCACTTCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTTCTGAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTTTTAAGTGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................ACTTAGTTCTTGGTGTTTTAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
droMoj3
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGTT--GGCCTTGAAC------TTGTC----TTTGAGTACCAACACAC-AG--TCTTCTGCCACAGTTTGTG---------------------TTTAAGTTGTTTTTTGATTTGATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTATAGGCTCATTTTTTATGCTCAACTTAGTTCTTGGTGTCTTGAGTGGGTAAGTT--GACCTGAAAACTTTATTGTTTTATTT-----T-----TGAAA-TC--------ACACTGGTTACCATTATT------------TAATTTCAATTTG------------------AT---------------------------------------------ATTATTGATTTGAATTGGGTATA-AGATTTCACC---ATAACATATACATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:03 AM