ID:

dan_1032

 Coordinate:

scaffold_12948:341354-341504 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.6 -12.6 -12.6

Flybase annnotation

exon [dana_GLEANR_5080:11]; CDS [Dana\GF21581-cds]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGGGTATCATATCGCAAGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTTAGTTTTTAGTTCGACTCATTCCACTCTATCTGTATCATGCACATTGTTTGCTAATTGGAGCCTCAATGTACGAGTAAGAGCCTATCGCCTAGCGTCTAGCGGCTATCGCCTAGCGCCCAGCTAATTGTGTTCCCGACTCTTAGTATGCAATCGAGATATCCTGCTTTATATACTTTCCTTACCTTGTCAGTG
*****************************************************************************************************************.(((...(((.......)))..((.((.....)))).(((.((((((.....)).))))))))))..*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V039
embryo
...........................................................................................................................................................TAGCGGCTATCGCCTAGCGCCCAGC....................................................................... 25 0 1 6.00 6 6 0 0 0
.....................................................................................................................................TAAGAGCCTATCGCCTAGCGTCTAGCGGC......................................................................................... 29 0 1 6.00 6 5 1 0 0
.................................................................................................................TTGGAGCCTCAATGTACGAGTAAGAGCC.............................................................................................................. 28 0 1 5.00 5 5 0 0 0
.........................................................................................................................TCAATGTACGAGTAAGAGCCTATCGCC....................................................................................................... 27 0 1 5.00 5 5 0 0 0
.........................................................................................................................................................TCTAGCGGCTATCGCCTAGCGCCCAGC....................................................................... 27 0 1 4.00 4 4 0 0 0
..............................................................................................CATGCACATTGTTTGCTAATTGGAGCC.................................................................................................................................. 27 0 1 3.00 3 3 0 0 0
.............................................................................................................................................TATCGCCTAGCGTCTAGCGGCTATCGCC.................................................................................. 28 0 1 3.00 3 3 0 0 0
.............................................................................................TCATGCACATTGTTTGCTAATTGGAGCCT................................................................................................................................. 29 0 1 3.00 3 3 0 0 0
..........................................................TAGTTTTTAGTTCGACTCATTCCAC........................................................................................................................................................................ 25 0 1 3.00 3 3 0 0 0
.....TATCATATCGCAAGGTGGTGCCCAGA............................................................................................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0
...............................................................................................................................TACGAGTAAGAGCCTATCGCCTAGCGTC................................................................................................ 28 0 1 3.00 3 3 0 0 0
.............................................................................................TCATGCACATTGTTTGCTAATTGGAGCC.................................................................................................................................. 28 0 1 3.00 3 3 0 0 0
.....................................................................................................................................TAAGAGCCTATCGCCTAGCGTCTAGC............................................................................................ 26 0 1 3.00 3 3 0 0 0
..........................................................................TCATTCCACTCTATCTGTATCATGCACA..................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0
.............................................................................TTCCACTCTATCTGTATCATGCACATTG.................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0
..........................................................TAGTTTTTAGTTCGACTCATTCCACTC...................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
.............................................................................................................................................TATCGCCTAGCGTCTAGCGGCTATCGC................................................................................... 27 0 1 2.00 2 2 0 0 0
.......................................................................................TCTGTATCATGCACATTGTTTGCTAAT......................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................................GCCCAGCTAATTGTGTTCCCGACTCT.................................................... 26 0 1 2.00 2 2 0 0 0
..........................................................................TCATTCCACTCTATCTGTATCATGCA....................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0
..............................................................................TCCACTCTATCTGTATCATGCACATTG.................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0
.....TATCATATCGCAAGGTGGTGCCCAG............................................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0
...........ATCGCAAGGTGGTGCCCAGAAAGGAA...................................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0
........................................................................................................................................GAGCCTATCGCCTAGCGTCTAGCGGC......................................................................................... 26 0 1 2.00 2 2 0 0 0
.........................................................................................................................................................................TAGCGCCCAGCTAATTGTGTTCCCGAC....................................................... 27 0 1 2.00 2 2 0 0 0
...................................................................................TCTATCTGTATCATGCACATTGTTTGC............................................................................................................................................. 27 0 1 2.00 2 2 0 0 0
............................................................................................................GCTAATTGGAGCCTCAATGTACGAGT..................................................................................................................... 26 0 1 2.00 2 2 0 0 0
..........................................................................................................................CAATGTACGAGTAAGAGCCTATCGC........................................................................................................ 25 0 1 1.00 1 1 0 0 0
...........ATCGCAAGGTGGTGCCCAGAAAGGAATG.................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................TATCCTGCGTTATATACTTTCCTTACC......... 27 1 1 1.00 1 1 0 0 0
....................................................................................................................................................TAGCGTCTAGCGGCTATCGCCTAGC.............................................................................. 25 0 1 1.00 1 1 0 0 0
......................................................................................................TTGTTTGCTAATTGGAGCCTCAATG............................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...............................................................TTTAGTTCGACTCATTCCACTCTATCTGT............................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
.................................................................TAGTTCGACTCATTCCACTCTATCTG................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................TGTTCCCGACTCTTAGTATGCAATCGAGA.................................... 29 0 1 1.00 1 1 0 0 0
....................................................................TTCGACTCATTCCACTCTATCTG................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................TCTTAGTATGCAATCGAGATATCCTGC............................ 27 0 1 1.00 1 1 0 0 0
.......................TGCCCAGAAAGGAATGATTTACTCTATGT....................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
........CATATCGCAAGGTGGTGCCCAGAAAGG........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................TATCCTGCTTTATATACTTTCCTTACC......... 27 0 1 1.00 1 1 0 0 0
................................................................TTAGTTCGACTCATTCCACTCTATCTG................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
..........................................................TAGTTTTTAGTTCGACTCATTCCACT....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
................................................................................................................................ACGAGTAAGAGCCTATCGCCTAGCG.................................................................................................. 25 0 1 1.00 1 1 0 0 0
...................................................................................TCTATCTGTATCATGCACATTGTTTG.............................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
.........ATATCGCAAGGTGGTGCCCAGAAAGGA....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
..........................................................................TCATTCCACTCTATCTGTATCATGC........................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
..............................................................................TCCACTCTATCTGTATCATGCACATTGTT................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0
...........................................................................................................................AATGTACGAGTAAGAGCCTATCGCC....................................................................................................... 25 0 1 1.00 1 1 0 0 0
.....................................................................TCGACTCATTCCACTCTATCTGTA.............................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
..........................................................TAGTTTTTGGTTCGACTCATTCCA......................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................TATCCTGCTTTATATACTTTCCTTACCT........ 28 0 1 1.00 1 1 0 0 0
.........................................................................................................TTTGCTAATTGGAGCCTCAATGTAC......................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................................................................................................TCAATGTATGAGTAAGAGCCTATCGCC....................................................................................................... 27 1 1 1.00 1 1 0 0 0
....................................................................................CTATCTGTCTCATGCACATTGTTTGCT............................................................................................................................................ 27 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................TAATTGTGTTCCCGACTCTTAGTATGCA........................................... 28 0 1 1.00 1 1 0 0 0
..........................................................TAGTTTTTAGTTCGACTAATTCCACTC...................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..................................................................................................................................................................TATCGCCTAGCGCCCAGCTAATTGTG............................................................... 26 0 1 1.00 1 1 0 0 0
...............................................................................CCACTCTATCTGTATCATGCACATTGT................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
.........................................................................................................................TCAATGTAGGAGTAAGAGCCTATCGCC....................................................................................................... 27 1 1 1.00 1 1 0 0 0
.....................................................................................................................AGCCTCAATGTACGAGTAAGAGCCTATC.......................................................................................................... 28 0 1 1.00 1 1 0 0 0
...........................................................................................................TGCTAATTGGAGCCTCAATGTACGAGT..................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.............................................................................TTCCACTCTATCTGTATCATGCACA..................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.....TATCATATCGCAGGGTGGTGCCCAG............................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0
..........................................................................TCATTCCACTCTATCTGTATCATGCACAT.................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
.......................................................TTTTAGTTTTTAGTTCGACTCATTCCAC........................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
................................................................................................................................................CGCCTAGCGTCTAGCGGCTATCGCCTAG............................................................................... 28 0 1 1.00 1 1 0 0 0
................................................................................................TGCACATTGTTTGCTAATTGGAGCCTCA............................................................................................................................... 28 0 1 1.00 1 1 0 0 0
....................................................................................CTATCTGTATCATGCACATTGTTTGC............................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
................................................................................CACTCTATCTGTATCATGCACATTGTT................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................TAGCGGCTATCGCCTAGCGCCCAGCTAA.................................................................... 28 0 1 1.00 1 1 0 0 0
...........................................................AGTTTTTAGTTCGACTCATTCCACTC...................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................TCGCCTAGCGTCTAGCGGCTATCGCC.................................................................................. 26 0 1 1.00 1 1 0 0 0
...........................................................................CATTCCACTCTATCTGTATCATGCACA..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.....................................................................CCGACTCATTCCACTCTATCTGTATCATG......................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0
..............................................................................................................................GTACGAGTAAGAGCCTATCGCC....................................................................................................... 22 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................TGCAATCGAGATATCCTGCTTTATAT..................... 26 0 1 1.00 1 1 0 0 0
.............................................................................................................................TGTACGAGTGAGAGCCTATCGCCTAGC................................................................................................... 27 1 1 1.00 1 1 0 0 0
..............................................................................................................TAATTGGAGCCTCAATGTACGAGTAAGA................................................................................................................. 28 0 1 1.00 1 1 0 0 0
..................................................................................................................TGGAGCCTCAATGTACGAGTAAGAGCCT............................................................................................................. 28 0 1 1.00 1 0 1 0 0
....................TGGTGCCCAGAAAGGAATGATTTACTCTA.......................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
....................................................................................................................................................TAGCGTCTAGCGGCTATCGCCTAGCGCC........................................................................... 28 0 1 1.00 1 1 0 0 0
.......TCATATCGCAAGGTGGTGCCCAGAAAG......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................TGTGTTCCCGACTCTTAGTATGCA........................................... 24 0 1 1.00 1 1 0 0 0
............................................................................................................................................................AGCGGCTATCGCCTAGCGCCCAGC....................................................................... 24 0 1 1.00 1 1 0 0 0
.......................CGCCCAGAAAGGAATGATTTACT............................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 1 0
...............................................................TTTAGTTCGACTCATTCCACTCTATCTG................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
..................................................................................................................................................CCAATAGTCTAGCGGCTATC..................................................................................... 20 3 5 0.20 1 1 0 0 0
...................................................................................GCTAACTGTATCATGCTCA..................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0
.............................................................................................................................................................................................................................ACTTTATGTACTTTCTTTACC......... 21 3 18 0.06 1 0 0 1 0
.........................................................................CTAGTTCCACTATATCTGT............................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0
................................................................................................................................................CGCCTCGCGTCTAACGAC......................................................................................... 18 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

GTCCCATAGTATAGCGTTCCACCACGGGTCTTTCCTTACTAAATGAGATACATTCAAAATCAAAAATCAAGCTGAGTAAGGTGAGATAGACATAGTACGTGTAACAAACGATTAACCTCGGAGTTACATGCTCATTCTCGGATAGCGGATCGCAGATCGCCGATAGCGGATCGCGGGTCGATTAACACAAGGGCTGAGAATCATACGTTAGCTCTATAGGACGAAATATATGAAAGGAATGGAACAGTCAC
***********************************************************************.(((...(((.......)))..((.((.....)))).(((.((((((.....)).))))))))))..***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V106
head
 M044
female body
 V055
head
..................................CGTACTAAATGAGATACTT...................................................................................................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0
................................................................................................................................................................................................................................AAAATAAGAAAGGAATGGAA....... 20 2 6 0.17 1 1 0 0 0 0
.................................................................................TGAGACAGACATGGTACGA....................................................................................................................................................... 19 3 12 0.08 1 0 0 1 0 0
...................................................................................................................................................................................GTTTAACACGAGGGCTGGG..................................................... 19 3 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................CGCGGGTCGAATGACGCAA............................................................. 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:341304-341554 - dan_1032 CAGGGTATCATATCGCAAGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTTAGTT----TTTA-GTTCGA------CTCATTCCACT------------------------------CTATCTGTATCATGCACATTGTT-----TGCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCTATCGCCTAGCGTCTAGCG---GCTATCGCCTAGCG----CCCAGCTAATT--GTGTTCCCGACTCTTAGTATGCAATC-GAGATATCCTG---------------------------------------------CTT-TATATACTTTCCTTACCTTGTCAGT-----------------------G-------
droBip1 scf7180000395643:16954-17172 + CAAGGCATCATATCGCAAGGTGGTGCCCAAAAAGGAATGATTTACTCTATGTAAGTGTTAGTT----TTTA-GTTAGT------CTCATTCCACT------------------------------CTATATGTATCATGCACATTGTT-----TGCTAATT--------------GGAGCCTC-A--GT-----------------------------------G----------------------------------------------------------------AAAGCGTATGAGT---------------------------------------------T----CCCAGCTAACT--GTGTTTCCGACTCTTAGTATGCAATT-GAGATATCCTG---------------------------------------------CTTTTTTATACTTTCCTTCAGTTGTCAGT-----------------------G-------
droKik1 scf7180000302441:109620-109841 + CAGGGCATCATATCCCAGGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTTGTTT----TCT------GT------TTGATTTTATTTCGTATCCGTATCCGTATCCGTATCCGTATCCGTATTCGTACCATCAAGTGTA-----GGCTTGGC----------C-------------------------------------------ACCTATTGTTAGTACGCACAGCTAGTCCCCTGTTTTTTGGAGA---------------------------------------------------------------------------------------------------------------------------------ATCG-TA--AATCCTCTAAT------TCCTGGCTTGTAA--------------------------------------------TGCTAGCA------------------------------
droFic1 scf7180000454073:114790-114848 + CAGGGCATTATATCGCAGGGCGGCGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491242:243787-243987 + CAGGGCATCATTTCTCAGGGCGGTGCACAGAAAGGAATGATTTACTCTATGTAAGTTTGTGTT----TGTA-ATACGT------ATCATTCCATT-----------------------------GTTGTGTCTATCATGTGCATAGTA-----TGCCAGTC--------------TAGATC------------------------------------------------------------------------------------------------------------TAGACGTACAAGTAAAC---GTA----------------------GTACA-------CG----CCCCGCTAACT--AAGTCCCCGACTTTCGCCGTGCAATG-GGTATACTCTA-------------------------------------------------------------------------------------------TTTT----------
droRho1 scf7180000763611:96268-96488 + CAGGGCATCATATCTCAGGGAGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTC----TGTA-TTACGT------ATCATTCCATT-----------------------------GTTGTAGCTATCATGCGCATTGTA-----AGCCAGTC--------------TAGATC------------------------------------------------------------------------------------------------------------TAAACGTACAAGTAAAC---GTA----------------------GTTAA-------CG----CACAGCTATTT--AAGTCCCCGACTTTTGCCGTGCAATG-GGAAATTTTTATTAA------TCTTGGCCCACTC--------------------------------------------TGCTAAG-------------------------------
droBia1 scf7180000302126:635226-635425 - CAGGGCATCATATCTCAGGGTGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTGTATGTC----TGTA-TTAAGT------ATCATTC-----------------------------------------TAGAATGTGCATTGTA-TGTATGCCAGTC----------C-TCTAAATC------------------------------------------------------------------------------------------------------------GAAACGTACAAGTAAACGTAGTA----------------------GTTAA-------CG----CAC--------------------------------AATG-GATAAAACCTATTGA------TCTTGGCCCAC-T--------------------------------------------TGTTAGGATT--ATG-ATT--ATA--------------
droTak1 scf7180000414222:44282-44498 + CAGGGCATCATATCTCAGGGTGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTGTATGTC----TGTA-TTACGT------ATCATTC-----------------------------------------TATCATGCGCATTGTAAAGTATGCCAGTC----------C-------------------------------------------TCCTA-AGTC----------------------------------------------------------------AAAACGTACAAGTAAAC---GTA----------------------GTAAG-------CG----CAC--------------------------------AATG-GAAAAAACCTATTGA------TCTTGGCCCACTAC------------------------------------------TCGTTAGGATT-TGTT-ATT--ACATTTGCCGTCCTCTT
droEug1 scf7180000409008:1258602-1258824 - CAGGGCATCATTTCGCAGGGTGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTTTATCAA----TGTA-TTATCT------ATCATTC-----------------------------------------TATCATGTGCATTGTA-TCTATGCCAGTT--------------GAAGT-TC-A---------------------------------------------------------------------------------------------------------A-----------AACC---GTA----------------------GTTAA-------AGCAAGCAC--------------------------------CATGGTT--AAACCTTTTGCCTGAACTCTC-------TACTTAAGCAATCGATAAGTAAAACC-------------------TCGTTAGGATTCTATG-ATT--CTATAAGCTGTC-----
dm3 chrX:11865310-11865541 - CAGGGCATCATATCTCAGGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTA-TTACGT--ATCCATCATTC-----------------------------------------TATCACGTGCATTGTA-TGTATGCCAGTC--------------GAAAAATCGAA-A----A----CAAACAAGTACAAGTACCAG-T-----A----------------------------------------------------------------AAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------AATG-CA--AAACCTTTTGA------TCTCGATCAAAAA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCC--------
droSim2 x:11241038-11241268 - dsi_28232 CAGGGCATCATATCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTA-TTACGT--ACCCATCATTC-----------------------------------------TATCACGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTC-A--AACAAACAAACAAACAAGTAC------C----------AG--------------------------------------------------------------TAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------AATG-CA--AAACCTTTTGA------TCTCGATCAAAGA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCCG-------
droSec2 scaffold_53:81893-82123 - CAGGGCATCATATCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTA-TTACGT--ACCCATCATTC-----------------------------------------TATCACGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTC-A--AACAAACGAACAAACAAGTAC------C----------AG--------------------------------------------------------------TAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------AATG-CA--AAACCTTTTGA------TCTCGATCAAAGA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCCG-------
droYak3 X:14836162-14836391 + CAGGGCATCATTTCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTAAGTTTTGTTGTA-TTCCGTGTACCCATCATTC-----------------------------------------TATCATGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTA-AA-A--------ACAAACAAGTAC------A----------TG--------------------------------------------------------------TATATGTAAAGGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------TATG-GA--AAACCTTTTGA------TCTCGATCAAAAA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCCG-------
droEre2 scaffold_4690:3312440-3312674 + CAGGGCATCATATCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTG-TTACGT--ACCCATCATTC-----------------------------------------TGTCATGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTC-A--AA--------CAAACAAGTACAAGTACCAG-TA-AA--TG--------------------------------------------------------------TAAATGTTAATGTAAAT---GTA----------------------GTTAC-------CG----CAC--------------------------------AATG-GA--AAACCTATTGA------TCTCGATCAAAAG--------------------------------------------CGTTAGGATT--TTG-ATT--CAATTTGTCG-------
dp5 XL_group1e:9990927-9991242 + CAGGGCATCATATCGCAAGGTGGTGCACAGAAAGGAATGATTTACTCTATGTAAGTTTTTCGG----CTTAATCTTGT--A-----CACTC-------------TCTCACTGTCTCTCTCTCTCTCTGTCTTGATCATATGCATTGTA-----CGCTATTTGCATTCAATTTTT-GG-AATTC-AATATTTACCGAGCTAACTAATAT------C----------AG-ATAACCCCCCACTCCCATATCTCCTCTGGGACCCTAGCTAATTCTAGAACTTACTCCCTGACTCATTTAAATGTATAT---C--------------------GGTCGTACT-------TG----TAC-GCTAGCTTAGTATTCCG-------------------------------------------------------------------------------------------------TATTCGTATT--TTGTATTTCGTATTTGT---------
droPer2 scaffold_22:242678-242761 - CAGGGCATCAGATCGCAAGGTGGTGCACAGAAAGGAATGATTTACTCTAAGTAAGTTCTTCGG----CTTAATAAAGT--A-----CACTC-----------------------------------------TCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:10284111-10284169 - CAGGGTATAATATCGCAAGGTGGCGCAAAGAAAGGAATGATTTACTCTATGTAAGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:8695984-8696045 - CAGGGTATTATATCGCAAGGCGGTGCGAAGAAAGGAATGATTTACTCTATGTAAGTTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:12702371-12702428 - CAGGGTATTATATCGCAAGGTGGTGCAAAGAAAGGAATGATTTACTCTATGTAAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:11440859-11440935 - CAGGGTATTATATCGCAAGGTGGTGCAAAGAAAGGAATGATTTACTCTATGTAAGTTTTATTT----TAT--------------ATCATTT-----------------------------------------CATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAGGGTATCATATCGCAAGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTTAGTT----TTTA-GTTCGA------CTCATTCCACT------------------------------CTATCTGTATCATGCACATTGTT-----TGCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCTATCGCCTAGCGTCTAGCG---GCTATCGCCTAGCG----CCCAGCTAATT--GTGTTCCCGACTCTTAGTATGCAATC-GAGATATCCTG---------------------------------------------CTT-TATATACTTTCCTTACCTTGTCAGT-----------------------G-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................TAGCG---GCTATCGCCTAGCG----CCCAGC......................................................................................................................................................2516.006600000
.............................................................................................................................................................................................................................................................................................................TAAGA---GCCTATCGCCTAGCGTCTAGCG---GC............................................................................................................................................................................2916.006500010
...............................................................................................................................................................TT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCC....................................................................................................................................................................................................2815.005500000
.....................................................................................................................................................................................TC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCTATCGCC.............................................................................................................................................................................................2715.005500000
....................................................................................................................................................................................................................................................................................................................................TCTAGCG---GCTATCGCCTAGCG----CCCAGC......................................................................................................................................................2714.004400000
.......................................................................................................................................CATGCACATTGTT-----TGCTAATT--------------GGAGCC.......................................................................................................................................................................................................................................................................................................................................2713.003300000
........................................................................................................................................................................................................................................................................................................................TATCGCCTAGCGTCTAGCG---GCTATCGCC.....................................................................................................................................................................2813.003300000
......................................................................................................................................TCATGCACATTGTT-----TGCTAATT--------------GGAGCCT......................................................................................................................................................................................................................................................................................................................................2913.003300000
..........................................................TAGTT----TTTA-GTTCGA------CTCATTCCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2513.003300000
.....TATCATATCGCAAGGTGGTGCCCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
.......................................................................................................................................................................................................................................................................................................TACGAGTAAGA---GCCTATCGCCTAGCGTC......................................................................................................................................................................................2813.003300000
......................................................................................................................................TCATGCACATTGTT-----TGCTAATT--------------GGAGCC.......................................................................................................................................................................................................................................................................................................................................2813.003300000
.............................................................................................................................................................................................................................................................................................................TAAGA---GCCTATCGCCTAGCGTCTAGC..................................................................................................................................................................................2613.003300000
.....................................................................................TCATTCCACT------------------------------CTATCTGTATCATGCACA.............................................................................................................................................................................................................................................................................................................................................................................2812.002200000
........................................................................................TTCCACT------------------------------CTATCTGTATCATGCACATTG..........................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..........................................................TAGTT----TTTA-GTTCGA------CTCATTCCACT------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
........................................................................................................................................................................................................................................................................................................................TATCGCCTAGCGTCTAGCG---GCTATCGC......................................................................................................................................................................2712.002200000
................................................................................................................................TCTGTATCATGCACATTGTT-----TGCTAAT............................................................................................................................................................................................................................................................................................................................................................2712.002200000
...........................................................................................................................................................................................................................................................................................................................................................G----CCCAGCTAATT--GTGTTCCCGACTCT.................................................................................................................................2612.002200000
.....................................................................................TCATTCCACT------------------------------CTATCTGTATCATGCA...............................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.........................................................................................TCCACT------------------------------CTATCTGTATCATGCACATTG..........................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.....TATCATATCGCAAGGTGGTGCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
...........ATCGCAAGGTGGTGCCCAGAAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
................................................................................................................................................................................................................................................................................................................GA---GCCTATCGCCTAGCGTCTAGCG---GC............................................................................................................................................................................2612.002200000
.......................................................................................................................................................................................................................................................................................................................................................TAGCG----CCCAGCTAATT--GTGTTCCCGAC....................................................................................................................................2712.002200000
..............................................................................................T------------------------------CTATCTGTATCATGCACATTGTT-----TGC................................................................................................................................................................................................................................................................................................................................................................2712.002200000
..........................................................................................................................................................GCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGT..............................................................................................................................................................................................................2612.002200000
......................................................................................................................................................................................C-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCTATCGC..............................................................................................................................................................................................2511.001100000
...........ATCGCAAGGTGGTGCCCAGAAAGGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................................................................TAGCGTCTAGCG---GCTATCGCCTAGC.................................................................................................................................................................2511.001100000
...............................................................................................................................................TTGTT-----TGCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATG.....................................................................................................................................................................................................................2511.001100000
...................................................................TTTA-GTTCGA------CTCATTCCACT------------------------------CTATCTGT.......................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.....................................................................TA-GTTCGA------CTCATTCCACT------------------------------CTATCTG........................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................................TGTTCCCGACTCTTAGTATGCAATC-GAGA................................................................................................................2911.001100000
.........................................................................TTCGA------CTCATTCCACT------------------------------CTATCTG........................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................TCTTAGTATGCAATC-GAGATATCCTG---------------------------------------------C...........................................................2711.001100000
.......................TGCCCAGAAAGGAATGATTTACTCTATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
........CATATCGCAAGGTGGTGCCCAGAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................TATCCTG---------------------------------------------CTT-TATATACTTTCCTTACC.......................................2711.001100000
....................................................................TTA-GTTCGA------CTCATTCCACT------------------------------CTATCTG........................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................TAGTT----TTTA-GTTCGA------CTCATTCCACT------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................................................................................................................................ACGAGTAAGA---GCCTATCGCCTAGCG........................................................................................................................................................................................2511.001100000
..............................................................................................T------------------------------CTATCTGTATCATGCACATTGTT-----TG.................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........ATATCGCAAGGTGGTGCCCAGAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................TCATTCCACT------------------------------CTATCTGTATCATGC................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................TCCACT------------------------------CTATCTGTATCATGCACATTGTT-----...................................................................................................................................................................................................................................................................................................................................................................2911.001100000
........................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCTATCGCC.............................................................................................................................................................................................2511.001100000
..........................................................................TCGA------CTCATTCCACT------------------------------CTATCTGTA......................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................TATCCTG---------------------------------------------CTT-TATATACTTTCCTTACCT......................................2811.001100000
..................................................................................................................................................TT-----TGCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTAC..................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................TAATT--GTGTTCCCGACTCTTAGTATGCA........................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................TATCGCCTAGCG----CCCAGCTAATT--GTG............................................................................................................................................2611.001100000
..........................................................................................CCACT------------------------------CTATCTGTATCATGCACATTGT.........................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................AGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCTATC................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................TGCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGT..............................................................................................................................................................................................................2711.001100000
........................................................................................TTCCACT------------------------------CTATCTGTATCATGCACA.............................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................TCATTCCACT------------------------------CTATCTGTATCATGCACAT............................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................TTTTAGTT----TTTA-GTTCGA------CTCATTCCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................CGCCTAGCGTCTAGCG---GCTATCGCCTAG..................................................................................................................................................................2811.001100000
.........................................................................................................................................TGCACATTGTT-----TGCTAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................2811.001100000
.............................................................................................................................CTATCTGTATCATGCACATTGTT-----TGC................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................CACT------------------------------CTATCTGTATCATGCACATTGTT-----...................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................TAGCG---GCTATCGCCTAGCG----CCCAGCTAA...................................................................................................................................................2811.001100000
...........................................................AGTT----TTTA-GTTCGA------CTCATTCCACT------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................................................................TCGCCTAGCGTCTAGCG---GCTATCGCC.....................................................................................................................................................................2611.001100000
......................................................................................CATTCCACT------------------------------CTATCTGTATCATGCACA.............................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................GTACGAGTAAGA---GCCTATCGCC.............................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................TGCAATC-GAGATATCCTG---------------------------------------------CTT-TATAT...................................................2611.001100000
............................................................................................................................................................TAATT--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---.......................................................................................................................................................................................................2811.001100000
................................................................................................................................................................T--------------GGAGCCTC-A-----------------------------------------------------------------------------------------------------------ATGTACGAGTAAGA---GCCT...................................................................................................................................................................................................2811.001000010
....................TGGTGCCCAGAAAGGAATGATTTACTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...............................................................................................................................................................................................................................................................................................................................TAGCGTCTAGCG---GCTATCGCCTAGCG----CC..........................................................................................................................................................2811.001100000
.......TCATATCGCAAGGTGGTGCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................T--GTGTTCCCGACTCTTAGTATGCA........................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................AGCG---GCTATCGCCTAGCG----CCCAGC......................................................................................................................................................2411.001100000
...................................................................TTTA-GTTCGA------CTCATTCCACT------------------------------CTATCTG........................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droBip1
CAAGGCATCATATCGCAAGGTGGTGCCCAAAAAGGAATGATTTACTCTATGTAAGTGTTAGTT----TTTA-GTTAGT------CTCATTCCACT------------------------------CTATATGTATCATGCACATTGTT-----TGCTAATT--------------GGAGCCTC-A--GT-----------------------------------G----------------------------------------------------------------AAAGCGTATGAGT---------------------------------------------T----CCCAGCTAACT--GTGTTTCCGACTCTTAGTATGCAATT-GAGATATCCTG---------------------------------------------CTTTTTTATACTTTCCTTCAGTTGTCAGT-----------------------G-------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGGGCATCATATCCCAGGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTTGTTT----TCT------GT------TTGATTTTATTTCGTATCCGTATCCGTATCCGTATCCGTATCCGTATTCGTACCATCAAGTGTA-----GGCTTGGC----------C-------------------------------------------ACCTATTGTTAGTACGCACAGCTAGTCCCCTGTTTTTTGGAGA---------------------------------------------------------------------------------------------------------------------------------ATCG-TA--AATCCTCTAAT------TCCTGGCTTGTAA--------------------------------------------TGCTAGCA------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGGGCATTATATCGCAGGGCGGCGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAGGGCATCATTTCTCAGGGCGGTGCACAGAAAGGAATGATTTACTCTATGTAAGTTTGTGTT----TGTA-ATACGT------ATCATTCCATT-----------------------------GTTGTGTCTATCATGTGCATAGTA-----TGCCAGTC--------------TAGATC------------------------------------------------------------------------------------------------------------TAGACGTACAAGTAAAC---GTA----------------------GTACA-------CG----CCCCGCTAACT--AAGTCCCCGACTTTCGCCGTGCAATG-GGTATACTCTA-------------------------------------------------------------------------------------------TTTT----------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGGGCATCATATCTCAGGGAGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTC----TGTA-TTACGT------ATCATTCCATT-----------------------------GTTGTAGCTATCATGCGCATTGTA-----AGCCAGTC--------------TAGATC------------------------------------------------------------------------------------------------------------TAAACGTACAAGTAAAC---GTA----------------------GTTAA-------CG----CACAGCTATTT--AAGTCCCCGACTTTTGCCGTGCAATG-GGAAATTTTTATTAA------TCTTGGCCCACTC--------------------------------------------TGCTAAG-------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGGGCATCATATCTCAGGGTGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTGTATGTC----TGTA-TTAAGT------ATCATTC-----------------------------------------TAGAATGTGCATTGTA-TGTATGCCAGTC----------C-TCTAAATC------------------------------------------------------------------------------------------------------------GAAACGTACAAGTAAACGTAGTA----------------------GTTAA-------CG----CAC--------------------------------AATG-GATAAAACCTATTGA------TCTTGGCCCAC-T--------------------------------------------TGTTAGGATT--ATG-ATT--ATA--------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGGGCATCATATCTCAGGGTGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTGTATGTC----TGTA-TTACGT------ATCATTC-----------------------------------------TATCATGCGCATTGTAAAGTATGCCAGTC----------C-------------------------------------------TCCTA-AGTC----------------------------------------------------------------AAAACGTACAAGTAAAC---GTA----------------------GTAAG-------CG----CAC--------------------------------AATG-GAAAAAACCTATTGA------TCTTGGCCCACTAC------------------------------------------TCGTTAGGATT-TGTT-ATT--ACATTTGCCGTCCTCTTSizeHit CountTotal NormTotal
No Reads
droEug1
CAGGGCATCATTTCGCAGGGTGGTGCTCAGAAAGGAATGATTTACTCTATGTAAGTTTATCAA----TGTA-TTATCT------ATCATTC-----------------------------------------TATCATGTGCATTGTA-TCTATGCCAGTT--------------GAAGT-TC-A---------------------------------------------------------------------------------------------------------A-----------AACC---GTA----------------------GTTAA-------AGCAAGCAC--------------------------------CATGGTT--AAACCTTTTGCCTGAACTCTC-------TACTTAAGCAATCGATAAGTAAAACC-------------------TCGTTAGGATTCTATG-ATT--CTATAAGCTGTC-----SizeHit CountTotal NormTotal
No Reads
dm3
CAGGGCATCATATCTCAGGGTGGTGCCCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTA-TTACGT--ATCCATCATTC-----------------------------------------TATCACGTGCATTGTA-TGTATGCCAGTC--------------GAAAAATCGAA-A----A----CAAACAAGTACAAGTACCAG-T-----A----------------------------------------------------------------AAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------AATG-CA--AAACCTTTTGA------TCTCGATCAAAAA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCC--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................GTGCATTGTA-TGTATGCCAGTC--------------.............................................................................................................................................................................................................................................................................................................................................22160.00600000000000000000000000000000000000000000000000000000000003710130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGCATTGTA-TGTATGCCAGT............................................................................................................................................................................................................................................................................................................................................................21153.0053000000000000000000000000000000000000000000000000000000000282050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGCATTGTA-TGTATGCCA..............................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000003030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGCATTGTA-TGTATGCCAG.............................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTGCCCAGAAAGGAATGATTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
..........................................................................................................................................GTGCATTGTA-TGTATGCCAGTC--------------G............................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CA..........................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GAAAGGAATGATTTACTCTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................................GAA-A----A----CAAACAAGTACAAGTACCAG-T-----A----------------------------------------------------------------AT.........................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATGTAAATGTAAAT---GTA----------------------GTTAA-------C.................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TGTT----TGTA-TTACGT--ATCC........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGCATTGTA-TGTATGCCAGTC--------------GAAAAA.......................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCCCAGAAAGGAATGATTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........TATCTCAGGGTGGTGCCCAGAAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................TGCCCAGAAAGGAATGATTTACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCCCAGAAAGGAATGATTTACTCTATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT--ATG-ATT--CTATTTGC.........1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTGTA-TGTATGCCAGTC--------------GAAAAATCGA...................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........TATCTCAGGGTGGTGCCCAGAAAGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................AAAATGTAAATGTAAAT---G......................................................................................................................................................................................................1850.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAGGGCATCATATCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTA-TTACGT--ACCCATCATTC-----------------------------------------TATCACGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTC-A--AACAAACAAACAAACAAGTAC------C----------AG--------------------------------------------------------------TAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------AATG-CA--AAACCTTTTGA------TCTCGATCAAAGA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCCG-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................CAAACAAACAAACAAGTA.............................................................................................................................................................................................................................................................................................................1821.00200000200000000000
droSec2
CAGGGCATCATATCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTA-TTACGT--ACCCATCATTC-----------------------------------------TATCACGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTC-A--AACAAACGAACAAACAAGTAC------C----------AG--------------------------------------------------------------TAAATGTAAATGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------AATG-CA--AAACCTTTTGA------TCTCGATCAAAGA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCCG-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAGGGCATCATTTCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTAAGTTTTGTTGTA-TTCCGTGTACCCATCATTC-----------------------------------------TATCATGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTA-AA-A--------ACAAACAAGTAC------A----------TG--------------------------------------------------------------TATATGTAAAGGTAAAT---GTA----------------------GTTAA-------CG----CAC--------------------------------TATG-GA--AAACCTTTTGA------TCTCGATCAAAAA--------------------------------------------CGTTAGGATT--ATG-ATT--CTATTTGCCG-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAGGGCATCATATCTCAGGGTGGTGCGCAGAAAGGAATGATTTACTCTATGTAAGTTTATGTT----TGTG-TTACGT--ACCCATCATTC-----------------------------------------TGTCATGTGCATTGTA-TGTATGCCAGTC--------------GAAAACTC-A--AA--------CAAACAAGTACAAGTACCAG-TA-AA--TG--------------------------------------------------------------TAAATGTTAATGTAAAT---GTA----------------------GTTAC-------CG----CAC--------------------------------AATG-GA--AAACCTATTGA------TCTCGATCAAAAG--------------------------------------------CGTTAGGATT--TTG-ATT--CAATTTGTCG-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CAGGGCATCATATCGCAAGGTGGTGCACAGAAAGGAATGATTTACTCTATGTAAGTTTTTCGG----CTTAATCTTGT--A-----CACTC-------------TCTCACTGTCTCTCTCTCTCTCTGTCTTGATCATATGCATTGTA-----CGCTATTTGCATTCAATTTTT-GG-AATTC-AATATTTACCGAGCTAACTAATAT------C----------AG-ATAACCCCCCACTCCCATATCTCCTCTGGGACCCTAGCTAATTCTAGAACTTACTCCCTGACTCATTTAAATGTATAT---C--------------------GGTCGTACT-------TG----TAC-GCTAGCTTAGTATTCCG-------------------------------------------------------------------------------------------------TATTCGTATT--TTGTATTTCGTATTTGT---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CAGGGCATCAGATCGCAAGGTGGTGCACAGAAAGGAATGATTTACTCTAAGTAAGTTCTTCGG----CTTAATAAAGT--A-----CACTC-----------------------------------------TCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAGGGTATAATATCGCAAGGTGGCGCAAAGAAAGGAATGATTTACTCTATGTAAGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CAGGGTATTATATCGCAAGGCGGTGCGAAGAAAGGAATGATTTACTCTATGTAAGTTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................TGCGAAGAAAGGAATGATTTACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
...........ATCGCAAGGCGGTGCGAAGAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAGGGTATTATATCGCAAGGTGGTGCAAAGAAAGGAATGATTTACTCTATGTAAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAGGGTATTATATCGCAAGGTGGTGCAAAGAAAGGAATGATTTACTCTATGTAAGTTTTATTT----TAT--------------ATCATTT-----------------------------------------CATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:02 AM