ID:

dan_1028

 Coordinate:

scaffold_12948:335384-335655 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.4 -23.27 -23.27

Flybase annnotation

exon [dana_GLEANR_5080:14]; CDS [Dana\GF21581-cds]; exon [dana_GLEANR_5080:15]; CDS [Dana\GF21581-cds]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCGCGATGCTGACATTGTTCGCCGTCCAAACCGGCGAGGGATGGCCACAGTAAGCCCATTTGTTGTAACTAAAACTTTTCCATTTTAAGTCCACTGCCTATTTCTAATCTAATCTGTCACTCTGCAGCTCTGTCTGATTTTCGGGGCAGATGAGAATCTAGGTCAAGGAAATAACTAATTCATATTTTTTGCATGTTTTTTTTCTCAACCCTAACCTATCAATCTCGTCCATCGTCCATCCAAATCCAATATTGAAATCAAAATCGAAACTGATACCCAAAATCCACATACACCGACAATTCAACAAAATTCAACGAATAGGGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
*************************************************************************************.........((((((......((((..((((((......))))....))..))))....))))))((((((...(((((..(((........((..(((.........)))..))..........))).)))))....))))))................******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 V039
embryo
 M058
embryo
 V105
male body
.........................................................................................................................................................................................................................TATCAATCTCGTCCATCGTCCATCCAAA............................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
.....................................................................................................................................................................................................................AACCTATCAATCTCGTCCATCGTCCATC................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TAGGGTCTTGCAACACTCTATGGCTGC.......................... 27 0 1 2.00 2 2 0 0 0 0
........................................................................................................................................................................................................................CTATCAATCTCGTCCATCGTCCATC................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.....................................................................................TTAAGTCCACTGCCTATTTCTAATCTAA................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.................................................................................................................TCTGTCACTCTGCAGCTCTGTCTGAT......................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................TCTAATCTGTCACTCTGCAGCTCTGTC............................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
.........................................................................AACTTTTCGATTTTAAGTCCACTGCCTA............................................................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
..........................................TGGCCACAGTAAGCCCATTTGTTGTAAC.............................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CTGCCACTTATGAAGATAGGGGTCCAA... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................................CACTCTGCAGCTCTGTCTGATTTTCGGG.................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TTTTCGGGGCAGATGAGAATCTAGGTCA.............................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.........................................................................................................TAATCTAATCTGTCACTCTGCAGCTC................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................AAACTGATACCCAAAATCCACATACA............................................................................... 26 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................TCCAAAACCCACATACACCGA........................................................................... 21 2 1 1.00 1 0 1 0 0 0
...............................CCGGCGAGGGATGGCCACAGTAAGCC........................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
....................CGACGTCCAAACCGGCGG.............................................................................................................................................................................................................................................................................................................................................. 18 2 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................TCGAAACTGATACCCAAAATCCACATA................................................................................. 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................CAATCTCGTCCATCGTCCATCCAAATCC............................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................AACCCTGACCCAACAATCTCG................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................CCTATCAATCTCGTCCATCGTCCATC................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TATGGCTGCCACTTATGAAGATAGGGG........ 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................CTAATCTGTCACTCTGCAGCTCTGTC............................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................TAATCTGTCACTCTGCAGCTCTGTCTGAT......................................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTGCAACACTCTATGGCTGCCACTTATG.................. 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TGCAACACTCTATGGCTGCCACTTAT................... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................GATACCCAAAATCCACATACACCGACAAT....................................................................... 29 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................ACCTATCAATCTCGTCCATCGTC....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................TGAAATCAAAATCGAAACTGATACCCA............................................................................................ 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TTCAACGAATAGGGTCTTGCAACACT.................................... 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................CACATACACCGACAATTCAACAAAATTC........................................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................CACTCTATGGCTGCCACTTATGAAGATA............ 28 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................TGCATGTTTTTTTTCTCAACCCTAACC........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................TAAAACTTTTCCATTTTAAGTCCACTGCC................................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................AATCGAAACTGATACCCAAAATCCACATA................................................................................. 29 0 1 1.00 1 1 0 0 0 0
...............................................................................TCCATTTTAAGTCCACTGCCTATTTCT.......................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................CACTCTATGGCTGCCACTTATGAAGA.............. 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................AGAATGTAGAGCAAGGAAATA...................................................................................................................................................................................................... 21 3 8 0.25 2 0 0 0 1 1
............................................................................................................................................................ATCTAGGTCATGGAAAAAA..................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0
.............................................................................................................................................................................................................................................................TGAAATCAAAATAAAAACTGAT................................................................................................. 22 2 5 0.20 1 0 0 1 0 0
.....................................................................................................TTTCTAATCTAATCTGACC............................................................................................................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 1 0
.............................................................................................................................................................................................................................................................TGAGATCAAAATGAAAACTGAT................................................................................................. 22 3 7 0.14 1 0 1 0 0 0
.......................CGTGCAAACGGGCCAGGGAT......................................................................................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................GTCAATGAAAAGGGTCTTGC.......................................... 20 3 9 0.11 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................TGAAATCAAAATCTGAATTGAT................................................................................................. 22 3 9 0.11 1 0 1 0 0 0
.............................................................................................................................................................................................................................................................TGAGATCAAAATAAAAACTGAT................................................................................................. 22 3 11 0.09 1 0 1 0 0 0
................................................................................................................................................................................................................ACCCCAACCTCTCAATCTA................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CGGCGCTACGACTGTAACAAGCGGCAGGTTTGGCCGCTCCCTACCGGTGTCATTCGGGTAAACAACATTGATTTTGAAAAGGTAAAATTCAGGTGACGGATAAAGATTAGATTAGACAGTGAGACGTCGAGACAGACTAAAAGCCCCGTCTACTCTTAGATCCAGTTCCTTTATTGATTAAGTATAAAAAACGTACAAAAAAAAGAGTTGGGATTGGATAGTTAGAGCAGGTAGCAGGTAGGTTTAGGTTATAACTTTAGTTTTAGCTTTGACTATGGGTTTTAGGTGTATGTGGCTGTTAAGTTGTTTTAAGTTGCTTATCCCAGAACGTTGTGAGATACCGACGGTGAATACTTCTATCCCCAGGTTAGG
*******************************************************************************************************************************.........((((((......((((..((((((......))))....))..))))....))))))((((((...(((((..(((........((..(((.........)))..))..........))).)))))....))))))................************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 V039
embryo
 M058
embryo
 V105
male body
................................................................................................................................................................................................................................................................CTAGTTTTGGCTTTGACTATTGG............................................................................................. 23 3 1 2.00 2 2 0 0 0 0
..........................................................................................................................................................TTTAGATCCAGTTCCTTTATG..................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................................................................................................AGGTAGTTTTAGGTTATA....................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................CTTAGAGCCAGATCCTTTA....................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0
..................................................................................................................................................CGTCTACTCTCAGTTCCAGTT............................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................CTTATCTTAGATCCGGTTCCTT......................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0
...................................................................................................................................................................................................................................................................GTTTTGGCTTTCACTATTGGT............................................................................................ 21 3 10 0.50 5 4 0 0 0 1
..............GAACAAGCGGCAGGTTTAG................................................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0
.................................................................................................................................................................................................................................................................TAGTTTTGGCTTTCACTATTGG............................................................................................. 22 3 3 0.33 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................AGATACCGAGGGTGGATAGT................. 20 3 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................TTTTGGCTTTCACTATGGG............................................................................................. 19 2 6 0.17 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................AGTTTTGGCTTTCACTATTGG............................................................................................. 21 3 8 0.13 1 1 0 0 0 0
................................................................................................................................................................TCCCGTTCCTTGATTGCTTA................................................................................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0
...........................................................................................................................................................................................................AGGGTGGGGATCGGATAGT...................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0
............................................................................................................................................................................................AAACGGACAAAAGAAAGAG..................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 1 0
.........................................................................TCGAAAAGGTAAGATTCAGA....................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1
..........................................................................................................................................................CGGAGATCCATTTCCTTTA....................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
..............................................................................ACGGTAATATTCAGGTGAA................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................................AAAAAAACCGTACAGAAAAAAGA...................................................................................................................................................................... 23 3 20 0.05 1 0 0 0 1 0
................................................................................................................................................................................................................................................GGTTTAGGTTAGGACTTT.................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:335334-335705 - dan_1028 GCCGCGATGCTGACATTGTTCGCCGTCCAAACCGGCGAGGGATGGCCACAGTAAGC-CCA----------T-----TT-GTTGT---------AACTAAAACTTTTCCATTTTAAGTCCACTGCC----------------------TATTTCTAATCTAATC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GATTTT------------------------------------------CGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGATG---------------AG--AATCTAGGTCAAGGAA---ATAACTAATTCATATTTTTTGCATGT----TTTTTTTCTCAACCCTAACCTAT-CAA----------------------TCTCGTCCATCGTCCATCCAAA--------------------------------------------------------------------TCCA---------ATAT----------------------------------------------TGAAA----TCAAAATCGAAACTGATACCCAAAATCCACATACACCG--------------------------ACAATTC---------------------------------------AACAAAAT------------------TCAACGAATAGGGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droBip1 scf7180000395643:22673-23077 + GCCGCGATGCTGACCCTGTTCGCCGTCCAAACCGGCGAGGGATGGCCACAGTAAGC-CCA----------C-----TT-GTTGTTT---------CTAAAATTATTACACTTTAAATTCACTGCC----------------------TATTTCTAATCTAATC-----------------------------------------------------TGT------------C--GCTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GATTTT------------------------------------------CGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGATA---------------AG--AATCTAGATCAAGGAA---ATAACTAATCCAATTTTTTTGCATGT----TTTTTTCT-CAACCCTTACCTTTACAA----------------------CCTCGTCCATCGTCCATCCAAATCAAAAATTGAAATCG-AAACCCAAACCGAAACTTTAATCAAAACTGAAA------------------------------------------------------------------------------------------CCGAAATCGTAACCGATACTCAAAATCCACAAACACCG----------------A-TTCAACA---------------------------------------------------AAAT------------------TCAACGAATAGAGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droKik1 scf7180000302441:116584-116946 + GCCGCGATGCTGACTCTCTTCGCCGTCCAGACCGGCGAGGGATGGCCACAGTAAGC-CCA----------C-----TTAGTTGTTG------TAAC-------------------------CAAG-------AATACTA----TGTAT------------ATTTCCGCTCTCTCTTAACTGTTGTCTATATAGAGCTATATATAGTCCT--------------------------------------------------------------------------CTA------TTCAAATCTCTCAACTG---ATCTG---------------ATCTATAATCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------TCG----CTCTGAAGGAAG------------------CTATTGAA-TCGAAGATT--TTAACTAACCAATATTTTTTGCCTCCTACTC-TTTTCCGCAAAA------------ATTCAA-----------------C-------------------------------------------------------------------------------------CAA-T----------------------CAACCAATCAACCAA----------------------------------CCGAACACG-----------------------------------------------TTCGTCCACGATA-----------------------------------------A--------CGAT------------------AAATAGAGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droFic1 scf7180000454073:121637-122048 + GCCGCAATGTTGACGCTATTTGCTGTGCAAACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTG---TAA-----------------------AC-CGA-----------------------T------------ATTTCCACC--------------------------------------CCATCTAT----GTATAT----------------------------TTGTATCCGTATCATGTATTT--------CGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAATCTGTCTTTTGA--------TCTGTCT----CTCTGTCGGCTGCAAATCCAAAAAAAAAACCAATCAAAATGAATAAC---ATACCTAACTAATGTATTTTACCTTT----CTTTCTCCTCAAAA---------------------------------A------------------------AAAAAAAAAAAAACA-AA----AAAATGAAAAAAAAAAAACAACTGCACCTTGAATGTTCATCCAC----ACAC--A------------------------------------------ACATTCAACAT-----------------------------------------TCATCGATCGAAAA--------A------ATATGAAT-----------------------------------------A--------CGAAT----------------AAAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droEle1 scf7180000491242:250543-250865 + GCCGCGATGCTGACACTTTTCGCTGTGCAGACCGGCGAGGGATGGCCACAGTAAGC-CCA----------T-----TT-GTTGTTG------TAAC-------------------------TGA-----------------------T------------ATTTCCCCT--------------------------------------TACTA--TATATCCATAT----------------------------CT------GCA-TCTGTATCT---------GTA------TCTGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTATCGA--------TCTGTGTACTGATCTGTCAAATG---------------AA--AAAGAAAATGCCAGAC---ATATCTAACGTATATATTTTGCCTCT----TTTTCTCCTCAAACTT-------ACAA----------------------T-----------------------------------------------------------------CTGCACCTTGAATGTCCATCCAC----AC-----------------------------------------------------C---------------------------------------------TCATCG----------------A-TTCAACTGCGA----------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droRho1 scf7180000763611:103429-103759 + GCCGCGATGTTGACACTATTCGCTGTCCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG------TAAC-------------------------TGAT-----------------------------------ATTTTC-----------------------------------------CACTA--TGT----ATAT----------------------------CTGTAATTGTAAC-TGTATCT---------GTA------TCTGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTATTGA--------------------TCTGTCAAATG---------------AA--AATGGAAATGACAGAC---ATACCTAACATAAATCTTTTGCCTCT----TTTTCTCCTCAAATTT-------ACAA----------------------T-----------------------------------------------------------------CTGCACCTTGAATGTCCATCCAC----AC------CCGTATACGA----------------A------------------TCCACATCGAT-------------------------------------TCATCG----------------A-TTAAACTGCGA----------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droBia1 scf7180000302126:628306-628668 - GCCGCGATGCTGACACTTTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG------TAA-----------------------------TAAG----TA---TAT--ATGTAC------------ATTTTCC----------------------------------------CGCTA--TGTTTCTAAAT----------------------------CT------GTAAT-TGT---------------TTCTGTATCT--------------ATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTC---TATGTCTATTGA--------TCTGTC------TCTGTTGGATG---------------AA--AATCGAAATGGACGAC---ATGGCTAACTGATATCTTTTGCCTCT----TTTTCTCCACAAAA---------------------------------AAA-----------------------------------------------------------------CTGCACCTTGAATGTCCATCCAA-TCCACAC--ATCTGTGTT------------------AA-----ACGAA--------ACCACATC-----------------------------------------AATCG----------------A-TTCAACTGCGATTAT---------------------------------------AC--------GAA-------------------TATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droTak1 scf7180000414222:51011-51371 + GCCGCGATGCTCACACTATTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAC----------T-----TT-GTTGTTA------TAAC-------------------------TAATAA------A---TATATCTGTAT------------ACCTTC-----------------------------------------CTCTA--TGTTTCCAAAT----------------------------CTGTAAACGTA----------------AATGTATCTGTATCT--------------ATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAT-GA--------TCTGTC------TCTGTTGGTTG---------------AAC--ATCGACCTGGAAGAC---ATACCTAACTGATATCTTTTGCCTCT----CTTTCTCCACAAA-----------------------------------AA-----------------------------------------------------------------CTGCACCTTGAATGTCCATCAAAATCCACAC--ACCCGTGTT-A----------------AA-----ACGAA--------ACCACAT-----------------------------------------TCATCG----------------A-TTCAACTGCGAATAT---------------------------------------AC-----------------------------GAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droEug1 scf7180000409008:1251172-1251615 - GCTGCGATGTTGACACTATTCGCCGTACAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG------TAAC-------------------------TGAT----TC--ATGCTA----TATAT------------ATTTCC-----------------------------------------CGCTA--TTTTTCGATAC----------------TTATGTAAAAC-TT------GTAACTTGTAACTTGTA-AC----TTGTGTATCT--------------TG-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------CTGCCTATTTGAATC----TCTGTC------TCTGTCGGATG---------------AACCTTTCGAAATGGAAAAC---ATATCTAACTTATATTTTTTGCCTCT----TTTTCTCCACAAAA---------------------------------A------------------------------------ACAAAAAACCAAAC-AAAAAAATAAACAAAACTGCACCTTGAATGCCCATCTAC----ACAC----GCGTGTC--------------------------------------ACCATAT-----------------------------------------TCATCG----------------A-ATCAACTGCGAATATTGAAAACCAAAAAAAAAACCAAAAACAAAATGAAATGAAAT--------GA-------------------AAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
dm3 chrX:11858243-11858708 - GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTGTTATAGC-------------------------TCATAAGATCGAA---TAT---TGTAT------------ATTTCCCCACC------------------------------------CGCTA--TATATCCATAT--------------------CTA-TAA-CT------GTAATATGTATCT-GTA-AAATGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CCGTCTATCGAACTCTCTATCTGTCT----ATCTGTCGGATG---------------AGCAAATCGAAATTGAAGACTAAATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAATCCAATCCACAACACAATAACAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACACACATCCGTGTACGA---------------AA-----ACGACAAATGCATTCCACATCGATC----GCGAAATTGA-------------------------T----CGATCTCGATTACGA-ATGAACTGCGAATAT---------------------------------------ACGAATATACGAAT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droSim2 x:11233973-11234429 - dsi_27757 GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTGTTATAGC-------------------------TCATAAGATCGAA---TAT---TGTAT------------ACTTCCCCC--------------------------------------CGCTA--TAT--------CTACATTC--------ATATCTA-CAA-CT------GTTATATGTATCT-GTA-AAATGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CCGTCTATCGAACTCTCTATCTGTCT----ATCTGTCGGATG---------------AACAAATCGAAATGGAAGAC---ATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAATAACAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCCGTGTACA----------------AA-----ACGACAAATGCATTCCACATCGATC----TCGAAATCGA-------------------------T----CGAACTCGATTCCGA-ATGAACTGCGAATAT---------------------------------------ACGAATATACGAAT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droSec2 scaffold_53:74848-75304 - GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTGTTATAGC-------------------------TCATAAGATCGAA---TAT---TGTAT------------ACTTCCCCC--------------------------------------CGCTA--TAT--------CTACATTC--------ATATCTA-CAA-CT------GTTATATGTATCT-GTA-AAATGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CCGTCTATCGAACTCTCTATCTGTCT----ATCTGTCGGATG---------------AACAAATCGAAATGGAAGAC---ATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAAAAACAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCCGTGTACA----------------AA-----ACGACAAATGCATTCCACATCGATC----TCGAAATCGA-------------------------T----CGAACTCGATTCCGA-ATGAACTGCGAATAT---------------------------------------ACGAATATACGAAT------------------AATAGGGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droYak3 v2_chrX_random_025:608-1059 - GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG---TTCTAAC-------------------------TGATAAGATCGAT---TA----TGTAT------------ACTTCCCCCCC------------------------------------CGCTC--TAT--TCACATCTACATTTAAATCTATATATCTT-GAA-CT------GTAATATGTATCT---------GTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CTGTCTATCGAACTC----TCTGTCT----ATCTGTCGGATG---------------AGCAAATCGAAATGGAAGAC---ATAGCTAACTAATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAATACCAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCTGTGTACA----------------AAAACCAACGACAAACGCATTCCATATCGATC----TCGAAATCGATAC---------------------------------CGATACCGA-TTGAACTGCGATCAT---------------------------------------AC-------CGATT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droEre2 scaffold_4690:3319216-3319653 + GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CCA----------T-----TT-GTTGTTA------TAAC-------------------------TCATAAGATCGAA---TA----TGTAT------------ATTTCCCCC--------------------------------------CGCTA--TATATCTATAT----------------------------CT------GTAATATGTATCT-GTA-AAATGTA------CCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CTGTCTATCGAACTC----TCTGTCT----AACTGTCGGATG---------------AGCAAATCGAAATGGAAGAC---ATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAAT---AA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCCGTGTACA----------------AA-----ACGACAAACGCATTCCACATCGATCGATTTCGATTTCGATTCCGATCC---------------------CGATCCCGATTCCGA-ATGAACTGCGAACAAT--------------------------------------A--------CGAAT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
dp5 XL_group1e:9997018-9997367 + GCCGCGATGCTGACACTGTTCGCTGTCCAGACCGGCGAAGGATGGCCACAGTAAGC-CCCCCACCCCCACTTCCTATT-GTTGTTG------TAA-----------------------ACCTGCT-----------------------------------ATC-----------------------------------------------------TAT------------C--ACTCTAT------A-TGCTTTA------T-ATATGTATCT-AAACAGATATA------TGCATATCTATCTCTTG---ATCTGTCTTTATCACAACCTATCTATCAATTGAACATTTGTCTA----------------------------------------------------------------ACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------ATTG--AAT---ATAACTAAATGATATTTTTTATCG-T----TTTTCTTC--A------------------------------------------------------------------------------------------------------------------------------------TAC--ATCCATATACAATTTATCCAT--------------------------------CCGAT-------------------------------------CCATCG----------------AATTCAACTGCGACT--------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droPer2 scaffold_22:235598-235947 - GCCGCGATGCTGACACTGTTCGCTGTCCAGACCGGCGAGGGATGGCCACAGTAAGC-CCCCCACCCCCACTTCCTATT-GTTGTTG------TAA-----------------------ACCTGCT-----------------------------------ATC-----------------------------------------------------TAT------------C--ACTCTAT------A-TGCTTTA------T-ATATGTATCC-ATACAGATATA------TGTATATCTATCTCTTG---ATCTGTCTTTATCACAACCTATCTATCAATTGAACATTTGTCTA----------------------------------------------------------------ACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------ATTG--AAT---ATAACTAAATGATATTTTTTATCG-T----TTTTCTCCA--------------------------------------------------------------------------------------------------------------------------------------TAC--ATCCATATACAATTTATCCAT--------------------------------TCGAT-------------------------------------CCATCG----------------AATTCAACTGCGACT--------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droWil2 scf2_1100000004909:10275518-10275971 - dwi_2866 GCCGCTATGCTGACACTGTTCGCTGTCCAGACCGGCGAGGGATGGCCACAGTAAGA--------------TTCATTAT-ATTGTTCCCCT--TGC-----------------------CCCTGCC-----------------------------------ACC-----------------------------------------------------T-------------------------------------------------------------------TA------TCT------------TA---ATCTATCTATTAAGCTATCTATCTATCATCTGTCTATCTATCTAATATCTAAATAATTAACTATTCAATACCCAACAACAACAACAACAAGTGTAGCAAAACCGAAATATGAAAATGGAAATTAACTAAATTGTATTTTATTACTTTTCCGCCCAATCACCGACCACCAACCACCAACCACCAACAACAACAACAACAACAATACAACCACCAAAAACCACCCACCACAC-----------------------------------------------------------------------------------------------------------GACATCT----CTTTCA-----------------------------------------------------------------------------------------------------------------------------------C----AA----ATATTTGTATG----------------AA-----AC-------------------GAT-------------------------------------TCAATG----------------A------CAATGACT-----------------------------------------A--------CAACAACAACAACAACAACAACAACTAGGGTCTTGCAACACTCAATGGCTGCCACATATGAAGATAGGGGTCCAATCC
droVir3 scaffold_12970:8688104-8688164 - TCATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC
droMoj3 scaffold_6473:12695007-12695092 - GCTGCTATGCTGACGCTGTTCGCCGTACAGACCGGCGAGGGATGGCCACAGTAAGCTCAG----------T-----TT-GCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATTTGTGTGTTTTGA
droGri2 scaffold_15203:11433161-11433229 - AATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------------TCATCAAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCCGCGATGCTGACATTGTTCGCCGTCCAAACCGGCGAGGGATGGCCACAGTAAGC-CCA----------T-----TT-GTTGT---------AACTAAAACTTTTCCATTTTAAGTCCACTGCC----------------------TATTTCTAATCTAATC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GATTTT------------------------------------------CGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGATG---------------AG--AATCTAGGTCAAGGAA---ATAACTAATTCATATTTTTTGCATGT----TTTTTTTCTCAACCCTAACCTAT-CAA----------------------TCTCGTCCATCGTCCATCCAAA--------------------------------------------------------------------TCCA---------ATAT----------------------------------------------TGAAA----TCAAAATCGAAACTGATACCCAAAATCCACATACACCG--------------------------ACAATTC---------------------------------------AACAAAAT------------------TCAACGAATAGGGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-CAA----------------------TCTCGTCCATCGTCCATCCAAA--------------------------------------------------------------------.............................................................................................................................................................................................................................................................................2812.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTAT-CAA----------------------TCTCGTCCATCGTCCATC.....................................................................................................................................................................................................................................................................................................................................................2812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGTCTTGCAACACTCTATGGCTGC..........................2712.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAT-CAA----------------------TCTCGTCCATCGTCCATC.....................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................TTAAGTCCACTGCC----------------------TATTTCTAATCTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................TC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................TCTAATC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------CTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................TGGCCACAGTAAGC-CCA----------T-----TT-GTTGT---------AAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACTTATGAAGATAGGGGTCCAA...2711.001100000
.......................................................................................................................................................................................................................................C--ACTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GATTTT------------------------------------------CGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................TTTT------------------------------------------CGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGATG---------------AG--AATCTAGGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................TAATCTAATC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGATACCCAAAATCCACATACA..................................................................................................................................................................2611.001100000
...............................CCGGCGAGGGATGGCCACAGTAAGC-C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAACTGATACCCAAAATCCACATA....................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----------------------TCTCGTCCATCGTCCATCCAAA--------------------------------------------------------------------TCC..........................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAT-CAA----------------------TCTCGTCCATCGTCCATC.....................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTGCCACTTATGAAGATAGGGG........2711.001100000
.............................................................................................................................................................CTAATC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------CTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................TAATC-----------------------------------------------------TGT------------C--ACTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAACACTCTATGGCTGCCACTTATG..................2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACACTCTATGGCTGCCACTTAT...................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCCAAAATCCACATACACCG--------------------------ACAAT................................................................................................................................2911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTAT-CAA----------------------TCTCGTCCATCGTC.........................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA----TCAAAATCGAAACTGATACCCA...............................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------TCAACGAATAGGGTCTTGCAACACT....................................2611.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACACCG--------------------------ACAATTC---------------------------------------AACAAAAT------------------TC...........................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTATGGCTGCCACTTATGAAGATA............2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATGT----TTTTTTTCTCAACCCTAACC....................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................TAAAACTTTTCCATTTTAAGTCCACTGCC----------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAAACTGATACCCAAAATCCACATA....................................................................................................................................................................2911.001100000
.........................................................................................................TCCATTTTAAGTCCACTGCC----------------------TATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTATGGCTGCCACTTATGAAGA..............2611.001100000
droBip1
GCCGCGATGCTGACCCTGTTCGCCGTCCAAACCGGCGAGGGATGGCCACAGTAAGC-CCA----------C-----TT-GTTGTTT---------CTAAAATTATTACACTTTAAATTCACTGCC----------------------TATTTCTAATCTAATC-----------------------------------------------------TGT------------C--GCTCTGC------A--GCT------------------------------------------CTGTCT------------------------------------------------------GATTTT------------------------------------------CGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGATA---------------AG--AATCTAGATCAAGGAA---ATAACTAATCCAATTTTTTTGCATGT----TTTTTTCT-CAACCCTTACCTTTACAA----------------------CCTCGTCCATCGTCCATCCAAATCAAAAATTGAAATCG-AAACCCAAACCGAAACTTTAATCAAAACTGAAA------------------------------------------------------------------------------------------CCGAAATCGTAACCGATACTCAAAATCCACAAACACCG----------------A-TTCAACA---------------------------------------------------AAAT------------------TCAACGAATAGAGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droKik1
GCCGCGATGCTGACTCTCTTCGCCGTCCAGACCGGCGAGGGATGGCCACAGTAAGC-CCA----------C-----TTAGTTGTTG------TAAC-------------------------CAAG-------AATACTA----TGTAT------------ATTTCCGCTCTCTCTTAACTGTTGTCTATATAGAGCTATATATAGTCCT--------------------------------------------------------------------------CTA------TTCAAATCTCTCAACTG---ATCTG---------------ATCTATAATCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------TCG----CTCTGAAGGAAG------------------CTATTGAA-TCGAAGATT--TTAACTAACCAATATTTTTTGCCTCCTACTC-TTTTCCGCAAAA------------ATTCAA-----------------C-------------------------------------------------------------------------------------CAA-T----------------------CAACCAATCAACCAA----------------------------------CCGAACACG-----------------------------------------------TTCGTCCACGATA-----------------------------------------A--------CGAT------------------AAATAGAGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droFic1
GCCGCAATGTTGACGCTATTTGCTGTGCAAACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTG---TAA-----------------------AC-CGA-----------------------T------------ATTTCCACC--------------------------------------CCATCTAT----GTATAT----------------------------TTGTATCCGTATCATGTATTT--------CGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAATCTGTCTTTTGA--------TCTGTCT----CTCTGTCGGCTGCAAATCCAAAAAAAAAACCAATCAAAATGAATAAC---ATACCTAACTAATGTATTTTACCTTT----CTTTCTCCTCAAAA---------------------------------A------------------------AAAAAAAAAAAAACA-AA----AAAATGAAAAAAAAAAAACAACTGCACCTTGAATGTTCATCCAC----ACAC--A------------------------------------------ACATTCAACAT-----------------------------------------TCATCGATCGAAAA--------A------ATATGAAT-----------------------------------------A--------CGAAT----------------AAAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droEle1
GCCGCGATGCTGACACTTTTCGCTGTGCAGACCGGCGAGGGATGGCCACAGTAAGC-CCA----------T-----TT-GTTGTTG------TAAC-------------------------TGA-----------------------T------------ATTTCCCCT--------------------------------------TACTA--TATATCCATAT----------------------------CT------GCA-TCTGTATCT---------GTA------TCTGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTATCGA--------TCTGTGTACTGATCTGTCAAATG---------------AA--AAAGAAAATGCCAGAC---ATATCTAACGTATATATTTTGCCTCT----TTTTCTCCTCAAACTT-------ACAA----------------------T-----------------------------------------------------------------CTGCACCTTGAATGTCCATCCAC----AC-----------------------------------------------------C---------------------------------------------TCATCG----------------A-TTCAACTGCGA----------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droRho1
GCCGCGATGTTGACACTATTCGCTGTCCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG------TAAC-------------------------TGAT-----------------------------------ATTTTC-----------------------------------------CACTA--TGT----ATAT----------------------------CTGTAATTGTAAC-TGTATCT---------GTA------TCTGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTATTGA--------------------TCTGTCAAATG---------------AA--AATGGAAATGACAGAC---ATACCTAACATAAATCTTTTGCCTCT----TTTTCTCCTCAAATTT-------ACAA----------------------T-----------------------------------------------------------------CTGCACCTTGAATGTCCATCCAC----AC------CCGTATACGA----------------A------------------TCCACATCGAT-------------------------------------TCATCG----------------A-TTAAACTGCGA----------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droBia1
GCCGCGATGCTGACACTTTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG------TAA-----------------------------TAAG----TA---TAT--ATGTAC------------ATTTTCC----------------------------------------CGCTA--TGTTTCTAAAT----------------------------CT------GTAAT-TGT---------------TTCTGTATCT--------------ATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTC---TATGTCTATTGA--------TCTGTC------TCTGTTGGATG---------------AA--AATCGAAATGGACGAC---ATGGCTAACTGATATCTTTTGCCTCT----TTTTCTCCACAAAA---------------------------------AAA-----------------------------------------------------------------CTGCACCTTGAATGTCCATCCAA-TCCACAC--ATCTGTGTT------------------AA-----ACGAA--------ACCACATC-----------------------------------------AATCG----------------A-TTCAACTGCGATTAT---------------------------------------AC--------GAA-------------------TATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droTak1
GCCGCGATGCTCACACTATTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAC----------T-----TT-GTTGTTA------TAAC-------------------------TAATAA------A---TATATCTGTAT------------ACCTTC-----------------------------------------CTCTA--TGTTTCCAAAT----------------------------CTGTAAACGTA----------------AATGTATCTGTATCT--------------ATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAT-GA--------TCTGTC------TCTGTTGGTTG---------------AAC--ATCGACCTGGAAGAC---ATACCTAACTGATATCTTTTGCCTCT----CTTTCTCCACAAA-----------------------------------AA-----------------------------------------------------------------CTGCACCTTGAATGTCCATCAAAATCCACAC--ACCCGTGTT-A----------------AA-----ACGAA--------ACCACAT-----------------------------------------TCATCG----------------A-TTCAACTGCGAATAT---------------------------------------AC-----------------------------GAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
droEug1
GCTGCGATGTTGACACTATTCGCCGTACAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG------TAAC-------------------------TGAT----TC--ATGCTA----TATAT------------ATTTCC-----------------------------------------CGCTA--TTTTTCGATAC----------------TTATGTAAAAC-TT------GTAACTTGTAACTTGTA-AC----TTGTGTATCT--------------TG-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------CTGCCTATTTGAATC----TCTGTC------TCTGTCGGATG---------------AACCTTTCGAAATGGAAAAC---ATATCTAACTTATATTTTTTGCCTCT----TTTTCTCCACAAAA---------------------------------A------------------------------------ACAAAAAACCAAAC-AAAAAAATAAACAAAACTGCACCTTGAATGCCCATCTAC----ACAC----GCGTGTC--------------------------------------ACCATAT-----------------------------------------TCATCG----------------A-ATCAACTGCGAATATTGAAAACCAAAAAAAAAACCAAAAACAAAATGAAATGAAAT--------GA-------------------AAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotal
No Reads
dm3
GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTGTTATAGC-------------------------TCATAAGATCGAA---TAT---TGTAT------------ATTTCCCCACC------------------------------------CGCTA--TATATCCATAT--------------------CTA-TAA-CT------GTAATATGTATCT-GTA-AAATGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CCGTCTATCGAACTCTCTATCTGTCT----ATCTGTCGGATG---------------AGCAAATCGAAATTGAAGACTAAATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAATCCAATCCACAACACAATAACAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACACACATCCGTGTACGA---------------AA-----ACGACAAATGCATTCCACATCGATC----GCGAAATTGA-------------------------T----CGATCTCGATTACGA-ATGAACTGCGAATAT---------------------------------------ACGAATATACGAAT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................TCAGACCGGCGAGGGATGGCCACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
................................CGGCGAGGGATGGCCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTCAGACCGGCGAGGGATGGCCACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
............................AGACCGGCGAGGGATGGCCACAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTCAATGGCTGCCACTTATGAAGA..............2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---------------------------------------ACGAATATACGAAT------------------AATAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTCAGACCGGCGAGGGATGGCCACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................ACCGGCGAGGGATGGCCACAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCAATGGCTGCCACTTATGAAGA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AA-CT------GTAATATGTATCT-GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGCGATGTTGACCCTGTTCGCCGTTCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCTGCGATGTTGACCCTGTTCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTTGACCCTGTTCGCCGTTCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................AGACCGGCGAGGGATGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACTAAATAGCTAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATGGCTGCCACTTATGAAGA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CAGACCGGCGAGGGATGGCCACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAATGGCTGCCACTTATGAAGA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------AGCAAATCGAAATTGAAGACTAAATAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------------------T----CGATCTCGATTACGA-ATGAACTGC....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------------------------T----CGATCTCGATTACGA-ATGAAC.......................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CAGACCGGCGAGGGATGGCCACAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTCAATGGCTGCCACTTATGAA................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTTGACCCTGTTCGCCGTTCAGACCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATGAACTGCGAATAT---------------------------------------ACGA...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
GCTGCGATGTTGACCCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGTTCGCCGTTCAGACCGGCGAGGGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGTAAGC-CAA----------T-----TT-GTTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTGTTATAGC-------------------------TCATAAGATCGAA---TAT---TGTAT------------ACTTCCCCC--------------------------------------CGCTA--TAT--------CTACATTC--------ATATCTA-CAA-CT------GTTATATGTATCT-GTA-AAATGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CCGTCTATCGAACTCTCTATCTGTCT----ATCTGTCGGATG---------------AACAAATCGAAATGGAAGAC---ATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAATAACAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCCGTGTACA----------------AA-----ACGACAAATGCATTCCACATCGATC----TCGAAATCGA-------------------------T----CGAACTCGATTCCGA-ATGAACTGCGAATAT---------------------------------------ACGAATATACGAAT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAAATGGAAGAC---ATAGCTAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
droSec2
GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTGTTGTTATAGC-------------------------TCATAAGATCGAA---TAT---TGTAT------------ACTTCCCCC--------------------------------------CGCTA--TAT--------CTACATTC--------ATATCTA-CAA-CT------GTTATATGTATCT-GTA-AAATGTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CCGTCTATCGAACTCTCTATCTGTCT----ATCTGTCGGATG---------------AACAAATCGAAATGGAAGAC---ATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAAAAACAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCCGTGTACA----------------AA-----ACGACAAATGCATTCCACATCGATC----TCGAAATCGA-------------------------T----CGAACTCGATTCCGA-ATGAACTGCGAATAT---------------------------------------ACGAATATACGAAT------------------AATAGGGTCTTGCAACACTCTATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CAA----------T-----TT-GTTGTTG---TTCTAAC-------------------------TGATAAGATCGAT---TA----TGTAT------------ACTTCCCCCCC------------------------------------CGCTC--TAT--TCACATCTACATTTAAATCTATATATCTT-GAA-CT------GTAATATGTATCT---------GTA------TCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CTGTCTATCGAACTC----TCTGTCT----ATCTGTCGGATG---------------AGCAAATCGAAATGGAAGAC---ATAGCTAACTAATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAATACCAA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCTGTGTACA----------------AAAACCAACGACAAACGCATTCCATATCGATC----TCGAAATCGATAC---------------------------------CGATACCGA-TTGAACTGCGATCAT---------------------------------------AC-------CGATT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCTGCGATGTTGACCCTGTTCGCCGTTCAGACCGGCGAGGGATGGCCACAGTAAGC-CCA----------T-----TT-GTTGTTA------TAAC-------------------------TCATAAGATCGAA---TA----TGTAT------------ATTTCCCCC--------------------------------------CGCTA--TATATCTATAT----------------------------CT------GTAATATGTATCT-GTA-AAATGTA------CCT--------------GT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------CTGTCTATCGAACTC----TCTGTCT----AACTGTCGGATG---------------AGCAAATCGAAATGGAAGAC---ATAGCTAACTGATATCTTTTGCCTCT----CTTTCTTC--A------------ACAAT-----CCACAACACAAT---AA-----------------------------------------------------------------CTGCACC-TGAATGTCCATCCAC----ACAC--ATCCGTGTACA----------------AA-----ACGACAAACGCATTCCACATCGATCGATTTCGATTTCGATTCCGATCC---------------------CGATCCCGATTCCGA-ATGAACTGCGAACAAT--------------------------------------A--------CGAAT------------------AATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GCCGCGATGCTGACACTGTTCGCTGTCCAGACCGGCGAAGGATGGCCACAGTAAGC-CCCCCACCCCCACTTCCTATT-GTTGTTG------TAA-----------------------ACCTGCT-----------------------------------ATC-----------------------------------------------------TAT------------C--ACTCTAT------A-TGCTTTA------T-ATATGTATCT-AAACAGATATA------TGCATATCTATCTCTTG---ATCTGTCTTTATCACAACCTATCTATCAATTGAACATTTGTCTA----------------------------------------------------------------ACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------ATTG--AAT---ATAACTAAATGATATTTTTTATCG-T----TTTTCTTC--A------------------------------------------------------------------------------------------------------------------------------------TAC--ATCCATATACAATTTATCCAT--------------------------------CCGAT-------------------------------------CCATCG----------------AATTCAACTGCGACT--------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GCCGCGATGCTGACACTGTTCGCTGTCCAGACCGGCGAGGGATGGCCACAGTAAGC-CCCCCACCCCCACTTCCTATT-GTTGTTG------TAA-----------------------ACCTGCT-----------------------------------ATC-----------------------------------------------------TAT------------C--ACTCTAT------A-TGCTTTA------T-ATATGTATCC-ATACAGATATA------TGTATATCTATCTCTTG---ATCTGTCTTTATCACAACCTATCTATCAATTGAACATTTGTCTA----------------------------------------------------------------ACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------ATTG--AAT---ATAACTAAATGATATTTTTTATCG-T----TTTTCTCCA--------------------------------------------------------------------------------------------------------------------------------------TAC--ATCCATATACAATTTATCCAT--------------------------------TCGAT-------------------------------------CCATCG----------------AATTCAACTGCGACT--------------------------------------------------------------------------ATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................TGAACATTTGTCTA----------------------------------------------------------------ACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
GCCGCTATGCTGACACTGTTCGCTGTCCAGACCGGCGAGGGATGGCCACAGTAAGA--------------TTCATTAT-ATTGTTCCCCT--TGC-----------------------CCCTGCC-----------------------------------ACC-----------------------------------------------------T-------------------------------------------------------------------TA------TCT------------TA---ATCTATCTATTAAGCTATCTATCTATCATCTGTCTATCTATCTAATATCTAAATAATTAACTATTCAATACCCAACAACAACAACAACAAGTGTAGCAAAACCGAAATATGAAAATGGAAATTAACTAAATTGTATTTTATTACTTTTCCGCCCAATCACCGACCACCAACCACCAACCACCAACAACAACAACAACAACAATACAACCACCAAAAACCACCCACCACAC-----------------------------------------------------------------------------------------------------------GACATCT----CTTTCA-----------------------------------------------------------------------------------------------------------------------------------C----AA----ATATTTGTATG----------------AA-----AC-------------------GAT-------------------------------------TCAATG----------------A------CAATGACT-----------------------------------------A--------CAACAACAACAACAACAACAACAACTAGGGTCTTGCAACACTCAATGGCTGCCACATATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GCTGCTATGCTGACGCTGTTCGCCGTACAGACCGGCGAGGGATGGCCACAGTAAGCTCAG----------T-----TT-GCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATTTGTGTGTTTTGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------------TCATCAAATAGGGTCTTGCAACACTCAATGGCTGCCACTTATGAAGATAGGGGTCCAATCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:02 AM