ID:

dan_1026

 Coordinate:

scaffold_12948:330194-330344 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.6 -9.2

Flybase annnotation

exon [dana_GLEANR_5080:19]; CDS [Dana\GF21581-cds]; intron [Dana\GF21581-in]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######--------------------------------------------
TCATGCATGTGTATATCCTGCAACTGCAACGGTGTGTGGTCCAACAAATACATACGTGTGCACACACATATACACATGCATCAAATTCGCATAAATTTACGTACACACACATATGCGGCCCGCGCCCATCTATGTGTGGACGTGCTCTCATCTCCAATTACATCGATTACAACATGTACAACCAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACGATCTACACGGATTTTACATTTATCGAAC
*******************************************************************************************************************************(((.(((((((((.(((....))).))))..))))).)))............................******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V106
head
 V039
embryo
 V105
male body
................................................................................................................................................................................................................TAAGTACAAAACACGATCTACACGGATTT.............. 29 0 1 7.00 7 7 0 0 0 0 0
................................................................................................................................................................................TACAACCAATCGACACAACCAGCAGCAC............................................... 28 0 1 6.00 6 5 0 0 1 0 0
...................................................................................................................................................................................AACCAATCGACACAACCAGCAGCACGA............................................. 27 0 1 5.00 5 5 0 0 0 0 0
..................................TGTGGTCCAACAAATACATACGTGTGCA............................................................................................................................................................................................. 28 0 1 5.00 5 5 0 0 0 0 0
.......TGTGTATATCCTGCAACTGCAACGGTG......................................................................................................................................................................................................................... 27 0 1 5.00 5 5 0 0 0 0 0
................................................................................................................................................................................................................TAAGTACAAAACACGATCTACACGGA................. 26 0 1 5.00 5 5 0 0 0 0 0
...............................................................................................................................ATCTATGTGTGGACGTGCTCTCATCTCC................................................................................................ 28 0 1 4.00 4 4 0 0 0 0 0
.......................................................................................................................................................................TACAACATGTACAACCAATCGACACAAC........................................................ 28 0 1 4.00 4 4 0 0 0 0 0
............................................................................................................................CCCATCTATGTGTGGACGTGCTCTCATC................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................TACGTACACACACATATGCGGCCCGCGCC............................................................................................................................. 29 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................................................................TGTACAACCAATCGACACAACCAGCAGC................................................. 28 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................CATCTATGTGTGGACGTGCTCTCATC................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
......................................................................................................................................................................................CAATCGACACAACCAGCAGCACGATG........................................... 26 0 1 3.00 3 3 0 0 0 0 0
..................TGCAACTGCAACGGTGTGTGGTCCAAC.............................................................................................................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0
...............................................................................................................................ATCTATGTGTGGACGTGCTCTCATC................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................CACACACATATGCGGCCCGCGCCCATC......................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................TACACACACATATGCGGCCCGCGCCCA........................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
...............TCCTGCAACTGCAACGGTGTGTGGTCCAA............................................................................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0
.............TATCCTGCAACTGCAACGGTGTGTG..................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.............TATCCTGCAACTGCAACGGTGTGTGG.................................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
...............TCCTGCAACTGCAACGGTGTGTGGTCC................................................................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................AATTTACGTACACACACATATGCGGCC................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................................................ACATGTACAACCAATCGACACAACC....................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TCGACACAACCAGCAGCACGATGTAAG....................................... 27 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................TCTATGTGTGGACGTGCTCTCATCTCCA............................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................ATCTATGTGTGGAGGTGCATT....................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0
..............................................................CACACATATACACATGCATCAAATTCGCA................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................ACAACCAATCGACACAACCAGCAGCAC............................................... 27 0 1 1.00 1 1 0 0 0 0 0
...........TATATCCTGCAACTGCAACGGTGTGTGG.................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................CATGTACAACCAATCGACACAACCAGCA................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............ATCCTGCAACTGCAACGGTGT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TACACACATATGCGGCCCGCGCCCATC......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................GCCCATCTATGTGTGGACGTGCTCTCA..................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................TGCAACGGTGTGTGGTCCAACAAATACA....................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................GTGGACGTGCTCTCATCTCCAATTAC.......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CACACATATGCGGCCCGCGCCCATCTATG..................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...........................AACGGTGTGTGGTCCAACAAATACATAA.................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................GCCCATCTATGTGTGGACGTGCTCTCATA................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................CCAGCAGCACGATGTAAGTACAAAACAC............................. 28 0 1 1.00 1 1 0 0 0 0 0
...............................GTGTGTGGTCCAACAAATACATACGTG................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................CCAATCGACACAACCAGCAGCACGATG........................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................TACAAAACACGATCTACACGGATTT.............. 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................TCGATTACAACATGTACAACCAATCGAC............................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TACACACACATATGCGGCCCGCGCCCATC......................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................ACCAATCGACACAACCAGCAGCACGATG........................................... 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................TGTGGACGGGCTCTCATCTCCAAT............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................ACCAATCGACACAACCAGCAGCACGA............................................. 26 0 1 1.00 1 1 0 0 0 0 0
.........................................CAACAAATACATACGTGTGCACACACA....................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................CATATACACATGCATCAAATTCGCATA.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...................GCAACTGCAACGGTGTGTGGTCCAAC.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................TGCTCTCATCTCCAATTACATGGAT.................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................TGTGGACGTGCTCTCATCTCCAATTACAA........................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................ACGATGTAAGTACAAAACACGATC......................... 24 0 1 1.00 1 1 0 0 0 0 0
...........................AACGGTGTGTGGTCCAACAAATACAT...................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................AACCAATCGACACAACCAGCAGCACGATG........................................... 29 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TACAACATGTACAACCAATCGACACA.......................................................... 26 0 1 1.00 1 1 0 0 0 0 0
................................TGTGTGGTCCAACAAATACATACGTG................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................CAACCAGCAGCACGATGTAAGTACAAAA................................ 28 0 1 1.00 1 1 0 0 0 0 0
........................TGCAACGGTGTGTGGTCCAACAAATAC........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................CACACATATACACATGCATCAAATTCG.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
......................................................................TACACATGCATCAAATTCGCATAAATT.......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GACGTGCTCTCATCTCCAATTACATC....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................CACGATCTACACGGATTTTACATTTATC.... 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................ACCAGCAGCACGATGTAAGTACAAAACAC............................. 29 0 1 1.00 1 1 0 0 0 0 0
..................TGCAACTGCAACGGTGTGTGGTCCAA............................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................GCCCATCTATGTGTGGACGTGCTCTCATC................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................TGCTCTCATCTCCAATTACATCGAT.................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................................TACGTGTGCACACACATATACACATGCA........................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................CAATCGACCCAACCAGCAGCACGATG........................................... 26 1 1 1.00 1 1 0 0 0 0 0
.......................................TCCAACAAATACATACGTGTGCACACACA....................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GCAGCACGATGTAAGTACAAAACACGATC......................... 29 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................CAGCAGCACGATGTAAGTACAAAACAC............................. 27 0 1 1.00 1 1 0 0 0 0 0
...................................GTGGTCCAACAAATACATACGTGTGCA............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CATCTATGTGTGGACGTGCTCTCATCTCC................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................ATGTACAACCAAACGGCACCAC........................................................ 22 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................TACAACCAATCGACACAACCAGCAGCA................................................ 27 0 1 1.00 1 1 0 0 0 0 0
............................................CAAATACATACGTGTGCACACACATA..................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATGCGGCCCGCGCCCATCTATGTGTGGAC.............................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0
.............TATCCTGCAACTGCAACGGTGTGTGGTCC................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACGTACACACACATATGCGGCCCGC................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................TGCTCTCATCTCCAATTACATCGATTAC................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................AAGTACAAAACACGATCTACACGGATT............... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GCAGCACGATGTAAGTACAAAACACGA........................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................ACACACATGTGCGGCCCGCGCCCATC......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................TGTGGACGTGCTCTCATCTCCAATTACA......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TACAACATGTACAACCAATCGACACAACC....................................................... 29 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................TGGACGTGCTCTCATCTCCAATTACAT........................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................TATACACATGCATCAAATTCGCATAAAT........................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACGTACAGACACATATGCGGCCCGCGCC............................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................TATGTGTGGACGTGCTCTCATCTCCAAT............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................AACCAGCAGCACGATGTAAGTACAAAA................................ 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................CAACATGTACAACCAATCGACACAAC........................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.....................AACTGCAATGGTGTGTGGTCCAACAAA........................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
..........................................................TGCACACACATATACACATGCATCAAA...................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TGTAAGTACAAAACACGATCTACACGG.................. 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................ACGTACACACACATATGCGGCCCGCGCC............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TAAGTACAAAACACGATCTACACGGATT............... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CATCTATGTGTGGACGTGCTCTCATCTC................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.................................................ACATACGTGTGCACACACATATACACA............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................TGGACGTGGTCTCATCTCCAATTACA......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................CCCATCTAGGTGTGGACGTGCTCTCATC................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................AGTACAAAACACGATCTACACGGATTT.............. 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................CGACACAACCAGCAGCACGATGTAAGT...................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GACGTGCTCTCATCTCCAATTACATCGAT.................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................AACATGTACAACCAATCGACACAACCA...................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................GACACAACCAGCAGCACGATGTAAGTACA................................... 29 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................GTGCTCTCATCTCCAATTACATCGA..................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................AATTACATCTATTACAACAGG........................................................................... 21 2 2 0.50 1 0 0 0 0 1 0
................................................................................................................................................................................TACAACCATTCGAAACAACT....................................................... 20 3 4 0.25 1 0 0 1 0 0 0
...............................................................................................................................ATCTATGGGTGGAGGTGC.......................................................................................................... 18 2 12 0.17 2 0 2 0 0 0 0
...............................................................................................................................ATCTATGGGTGGTCGTGC.......................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0
...............................................................................................................................ATCTATGTGTGGATGAGCTTT....................................................................................................... 21 3 8 0.13 1 0 0 1 0 0 0
...............................................................................................................................ATCTTGGTGCGGACGTGCTC........................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 1
...........................................................................................................................................................................................................TGATGGAAGTACGAAACACG............................ 20 3 9 0.11 1 0 0 1 0 0 0
...............................................................................................................................ATCTATGTGTGGTGGTGC.......................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0
.....................AACAGGAACGGTGAGTGGTC.................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 1
.......................................................................................................................................................................................AAGCGACACAACCCGCACC................................................. 19 3 20 0.05 1 0 1 0 0 0 0
.CATGCACGTGAATATCCTC....................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AGTACGTACACATATAGGACGTTGACGTTGCCACACACCAGGTTGTTTATGTATGCACACGTGTGTGTATATGTGTACGTAGTTTAAGCGTATTTAAATGCATGTGTGTGTATACGCCGGGCGCGGGTAGATACACACCTGCACGAGAGTAGAGGTTAATGTAGCTAATGTTGTACATGTTGGTTAGCTGTGTTGGTCGTCGTGCTACATTCATGTTTTGTGCTAGATGTGCCTAAAATGTAAATAGCTTG
********************************************************(((.(((((((((.(((....))).))))..))))).)))............................******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
 V106
head
 M058
embryo
...............................................................................................................................................CGAGAGTAGAAGTTAAAGTA........................................................................................ 20 2 3 0.67 2 0 0 2 0
............................................................................ACGTAGTTTAGGCGTATG............................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0
..........................................................................................................................................CTGCACGAGAGGATAGGGTAAT........................................................................................... 22 3 2 0.50 1 1 0 0 0
AGTGCGTATACATATAGGACAT..................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0
..............................CCACCCACCTGGTTGTTAATG........................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 1
.............................................................................................................................................................................................ATGTTGGGCGTTGTGCTACA.......................................... 20 3 4 0.25 1 0 1 0 0
..........................................................................................................TGGGTATGCGGCGGGCGCGG............................................................................................................................. 20 3 5 0.20 1 0 1 0 0
.............................................................................................................................................................................................GTGTTGGGCGTCGGGATACA.......................................... 20 3 6 0.17 1 1 0 0 0
...........................TTGCCATACACCAGATTCTT............................................................................................................................................................................................................ 20 3 6 0.17 1 0 1 0 0
.................................................................................................................ACGCCTGGCGCGGGCAG......................................................................................................................... 17 2 9 0.11 1 1 0 0 0
.........................................................................................................GTGTGTATACATCGGGCGTG.............................................................................................................................. 20 3 12 0.08 1 1 0 0 0
.............................................................................................................................................................................................GTGTTGGTCGTTGGTCTACA.......................................... 20 3 15 0.07 1 1 0 0 0
............................................................................................................................................CCACCAAAGTAGAGGTTAAT........................................................................................... 20 3 17 0.06 1 0 0 0 1
............................................................................................................GGTATACAGCGGGCGCGG............................................................................................................................. 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:330144-330394 - dan_1026 TCATGC------ATGTGTATATCCTGCAACTGC--AACGGTG-----TGTGGT-CCAAC-AAATACATAC--GTGTGCACACACAT---------------ATACACATGCATC----------------AAATTCGCATA---AATTTACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATCTATGTGTGGACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATCGA-TTACAACAT------------------------------------GTACAAC------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACATTTATCGAA-------------------------------------------------------------------------C
droBip1 scf7180000395643:31573-31823 + TCATGC------ATGTGTATATCCTGCAACTGC--AACGGTG-----TGTGGT-CCAAC-AATTACATAC--GTGTGCACACACAT---------------ATACACATGCATC----------------AAATTCGCATA---AATTTACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATTTATGTGTGGACGTGC-------------------------TAT-----------CATCT--------CCAACTA----------------------------------C----------------ATCGA-TTACAACAT------------------------------------GTACAAC------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACAGTTATCGAA-------------------------------------------------------------------------C
droKik1 scf7180000302441:121134-121425 + ATG------TGTATGTGTATGTTCGACACCTGT------GC-------------------------------------ACACACACACACACCACGTATACATACACATGCGTC-----------------------CATT----TTG--CGTGCACACACACACACACACAACCACTCGTATGTG--GT----------------------------------------------------GCGTGTGGGTGGACGCCC-------------------------TCTCCTCT-CTCATCATCA-----ACAACAATTC----------------------------------CA--------T--------CGA-TAACA------------ACAACAATTACAACAACAACAACAACATGTACAACAACCAACAACCGACACAACCAGCAGCACGATGTAAGTACGAAACACA----ATC-CTAC----ACCGATTTTGCATTTATCCAAAAT-A-----------------------------AAATACA---ACA--------------------------A
droFic1 scf7180000454073:126058-126364 + ATG------TGTATGTGTATGTCCTGCAACTGTGCAACTGTG-TGTGTGTCAATTGAAA----------C--GCGTGCACGCACAT---------------ATACACATGCATC-------------------CATGCATCTGTCATGCACGTGCACACACAC--A--------------ACTGTG--GCA--------------------------------ATTGG----------GCCCGTGTATGTGTGAACGTGGAT--------------------C--CTT-----------CATCA-AAAAACAACAACTA----------------------------------C----------------ATCGA-CAACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATACCAAAAAAA-----------------------------AAAAAAAAAACAAGCAATATACAAAGTTTTTAAAAATCC
droEle1 scf7180000491242:256084-256322 + ATG------TGTATGTGTATGTCCTGCTACTGT------GTC-----TGTAAT-CGTAC----------C--GCGTGCACGCACAT---------------ATACACATGCAT---------------------TCGCATC---CATACACGTGCACACACAC--A--------------AATGTG--GCA----------------------------------CGT----------GCCCGTGTATGTGTGGACGTGGT---------------------C--CTT-----------CATCT--------ACAACTA----------------------------------C----------------ATCGA-CTACAACAT------------------------------------GTACAAC------CAAACGACACAACCAGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATCCAAAAA-----------------------------------------------------------------------
droRho1 scf7180000763611:108193-108431 + ATG------TGTATGTGTATGTCCTGCTACTGT------GTC-----TGTAAT-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCAT---------------------TCGCATC---CATACACGTGCACACAC----A--------------TATGTG--GCA----------------------------------CGT----------GCCCGTGTATGTGTGGACGTGGC---------C--------------TCT-----------CATCT--------ACAACTA----------------------------------C----------------ATCGAATTACAACAT------------------------------------GAACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------C
droBia1 scf7180000302126:624210-624487 - ATG------TGTATGTGTATGTCCTGCTACTGT------GTCT---GTGTCAA-TCCAC----------CATGCGTGCACGCACAT---------------ATACACATGCATA-------------------TTCGCATC---CATACACGTGCACACACAC--A--------------TCCGTG--GCCGGT--------------------------G--------CACATGTTCGCCCGTGTATGTGTGGACGTGGCT----CTC----------------TCT-----------CATCA-----ACAAAAACTA----------------------------------CATCTGAACATCCGAACATCGA-CTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------C
droTak1 scf7180000414222:55157-55424 + ATG------TGTATGTGTATGTCCTGCTACTAT------GTA-----TGTAAA-TCAAC----------CATGCGTGCACGCACAT---------------ATACACATGCATA-------------------CTCGCATC---CATGCACGTGCACACACAC--A--------------TATGTG--GCTGGT--------------------------G--------TACCTGTATGCCCGTGTATGTGTGGACGTGGCC----CTC----------------TTT-----------CATCA-----ACAAAAACTA----------------------------------CA--------TCCGAACATCGA-CTACAACAT------------------------------------GTACAAC------TAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------G
droEug1 scf7180000409008:1246678-1247090 - ATG------TGTATGTGTATGTCCTGCAATTGT------GTA-----TGTCAA-TCAAC----------C--GTGTGCACGCACAT---------------ATACACATGCATATATTATATATATATCT---CTCGCATCTCGCATACACGTGCACACACACACA--------------TCTGTG--GT----TGCCCATGC-CGA----CTATGTCCTA----TGT----ATGCCCGCCCGTGTATGTGTGGACGTGGA------TATCTC------------CT----ATTATCATCATCTCAACAACAACAACTACTACAACAACAATAACAACAACAATAAAAACCCACA--------TCTGAACATCGA-CAACAAC------------------------AACAACAACAACATGTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACACTAAAT--CTACACACACTAATTTTGCATTTATCCTAAAAAAAACTAAAAAAAACAAAACAAAAAAGTATAAAAAACA---AAA--------------------------T
dm3 chrX:11854061-11854349 - CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACACACA--------------TATGTG--ACCGGTTTCCGGTGC--------------CCG------GT----------GTCCGTGTATGTGTGAACGTGACT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------G
droSim2 x:11229839-11230125 - CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------AACGCATC---CTTGCACGTGCACACACAC--A--------------TATGTG--CCCGGCTTCCGGTGC--------------CCG------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAAAAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------G
droSec2 scaffold_53:70706-70985 - CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACAC--A--------------TATGTG--CCCGGTTTCCG---------------------------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAAAAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCGAAAA----------------------------------------------------------------------G
droYak3 X:14845499-14845793 + CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTGT---CTGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACAC--A--------------CATGTG--GCCGGCTTCCGGTGG--------------CCG------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTATCAATATAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------G
droEre2 scaffold_4690:3323808-3324108 + CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACAC--A--------------TATGTG--GCCGGTTTCCGGTGTCCGGTAACCGGTGTCCG------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------G
droWil2 scf2_1100000004909:10268202-10268523 - GTATGC------ATGTGTATGTCCTGCTGC-----AATTGTG-----TGTTGC-CC--CTATGCACATGA--ATAT----GCACAT-------CTGT----ACCCACATATAT---------------------CTATATC---TATATATCTATATATATAT--A--------------TATGTATATCT--TTT------------------------ATATATGTATGT------ATATTTATATGTATATACATGAATACATATATATCTA------TA--TCT-----------CATCT--------ACAA------------------------------------------------CTAAACATCGA-CAACTACATGTACAACAACAACAACAACAACAACAAAAATAAAATATATA-TATATATCAACCAACACCACCAACAGCACGATGTAAGTACGAAACACA----ATCTCTAC----ACCGAT-TTGCATTTCTCAAATTT----------------------------------------------------------------------T
droVir3 scaffold_12970:8678963-8679131 - TT--GC------ATGTGTATGTGCTTCAATTGA------ATG-----TGTTAT-CCAA--------------------------------------------TACACATG-----------------------------------TTGCACATACATATGCAT---------------------------------------------------------------------------------------------------ACA--------------TATAT--AT-----------CATCT--------ACAACTA----------------------------------C----------------ATCG-------ACAT------------------------------------GTACAAC------AA-ATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTTTCAAAA-------------------------------------------------------------------------
droMoj3 scaffold_6473:12689097-12689330 - GAATAT------GTGTGTATGTGTTGACAC-GC--ACACGCA-CACACACCAAATG--------------------GCACACACAT-------ATGCATACATACAT---------------------------ATATATC---CATATATATATGTATATAT--A----------------------TCT---CA------------------------ATATATGTATACATATATATCTGTATATGTAT------------------------------A--ACT-----------CATCA--------ACAACTA----------------------------------C----------------ATCG-------ACAT------------------------------------GTACAAC------AA-ATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAAATTGCATTTTTCCAAA-------------------------------------------------------------------------
droGri2 scaffold_15203:11425770-11425943 - TTATGC------ATGTGTATGTGCTTCAATTGT------ATGT-ACGTGTTAT-CCAA---------------------CACACAT---------------ATT-------------------------------------------GCACATACATATGCAT---------------------------------------------------------------------------------------------------ACA--------------TATATATCT-----------CATCT--------ACAA-------------------------------------C----------------ATCG-------ACAT------------------------------------GTACAAC------AA-ATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTATCAAAA-------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCATGC------ATGTGTATATCCTGCAACTGC--AACGGTG-----TGTGGT-CCAAC-AAATACATAC--GTGTGCACACACAT---------------ATACACATGCATC----------------AAATTCGCATA---AATTTACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATCTATGTGTGGACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATCGA-TTACAACAT------------------------------------GTACAAC------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACATTTATCGAA-------------------------------------------------------------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAAAACACG----AT--CTAC----ACGGATTT.......................................................................................2917.007700000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAC------CAATCGACACAACCAGCAGCAC..................................................................................................................................2816.006500001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------CAATCGACACAACCAGCAGCACGA................................................................................................................................2715.005500000
...............................................TGTGGT-CCAAC-AAATACATAC--GTGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2815.005500000
.............TGTGTATATCCTGCAACTGC--AACGGTG-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.005500000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAAAACACG----AT--CTAC----ACGGA..........................................................................................2615.005500000
..................................................................................................................................................................................................................................................ATCTATGTGTGGACGTGC-------------------------TCT-----------CATCT--------CC................................................................................................................................................................................................................................................................................2814.004400000
.........................................................................................................................................................................................................................................................................................................................................................................................TACAACAT------------------------------------GTACAAC------CAATCGACACAAC...........................................................................................................................................2814.004400000
...............................................................................................................................................................................................................................................CCCATCTATGTGTGGACGTGC-------------------------TCT-----------CATC...........................................................................................................................................................................................................................................................................................2813.003300000
....................................................................................................................................................TACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCC.........................................................................................................................................................................................................................................................................................................................................................2913.003300000
................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------GTACAAC------CAATCGACACAACCAGCAGC....................................................................................................................................2813.003300000
.................................................................................................................................................................................................................................................CATCTATGTGTGGACGTGC-------------------------TCT-----------CATC...........................................................................................................................................................................................................................................................................................2613.003300000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGACACAACCAGCAGCACGATG..............................................................................................................................2613.003300000
........................TGCAACTGC--AACGGTG-----TGTGGT-CCAAC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
..................................................................................................................................................................................................................................................ATCTATGTGTGGACGTGC-------------------------TCT-----------CATC...........................................................................................................................................................................................................................................................................................2512.002200000
..........................................................................................................................................................CACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATC.....................................................................................................................................................................................................................................................................................................................................................2712.002200000
........................................................................................................................................................TACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCA.......................................................................................................................................................................................................................................................................................................................................................2712.002200000
.....................TCCTGCAACTGC--AACGGTG-----TGTGGT-CCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
...................TATCCTGCAACTGC--AACGGTG-----TGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
...................TATCCTGCAACTGC--AACGGTG-----TGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.....................TCCTGCAACTGC--AACGGTG-----TGTGGT-CC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
................................................................................................................................................AATTTACGTACACACAC----A--------------TATGCG--GCC----------------------------------.........................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................ACAT------------------------------------GTACAAC------CAATCGACACAACC..........................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACACAACCAGCAGCACGATGTAAG..........................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................TCTATGTGTGGACGTGC-------------------------TCT-----------CATCT--------CCA...............................................................................................................................................................................................................................................................................2811.001100000
...............................................................................CACACAT---------------ATACACATGCATC----------------AAATTCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC------CAATCGACACAACCAGCAGCAC..................................................................................................................................2711.001100000
.................TATATCCTGCAACTGC--AACGGTG-----TGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................CAT------------------------------------GTACAAC------CAATCGACACAACCAGCA......................................................................................................................................2811.001100000
....................ATCCTGCAACTGC--AACGGTG-----T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................GCCCATCTATGTGTGGACGTGC-------------------------TCT-----------CA.............................................................................................................................................................................................................................................................................................2711.001100000
..............................TGC--AACGGTG-----TGTGGT-CCAAC-AAATACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................................GTGGACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------........................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................CACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATCTATG.................................................................................................................................................................................................................................................................................................................................................2911.001100000
...................................AACGGTG-----TGTGGT-CCAAC-AAATACATAA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................GCCCATCTATGTGTGGACGTGC-------------------------TCT-----------CATA...........................................................................................................................................................................................................................................................................................2911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCACGATGTAAGTACAAAACAC................................................................................................................2811.001100000
.......................................GTG-----TGTGGT-CCAAC-AAATACATAC--GTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................C------CAATCGACACAACCAGCAGCACGATG..............................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAACACG----AT--CTAC----ACGGATTT.......................................................................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................TCGA-TTACAACAT------------------------------------GTACAAC------CAATCGAC................................................................................................................................................2811.001100000
........................................................................................................................................................TACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATC.....................................................................................................................................................................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------CAATCGACACAACCAGCAGCACGATG..............................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------CAATCGACACAACCAGCAGCACGA................................................................................................................................2611.001100000
.......................................................CAAC-AAATACATAC--GTGTGCACACACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................CAT---------------ATACACATGCATC----------------AAATTCGCATA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................GCAACTGC--AACGGTG-----TGTGGT-CCAAC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................TGTGGACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------AA......................................................................................................................................................................................................................2911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGTAAGTACAAAACACG----AT--C......................................................................................................2411.001100000
...................................AACGGTG-----TGTGGT-CCAAC-AAATACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------CAATCGACACAACCAGCAGCACGATG..............................................................................................................................2911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TACAACAT------------------------------------GTACAAC------CAATCGACACA.............................................................................................................................................2611.001100000
........................................TG-----TGTGGT-CCAAC-AAATACATAC--GTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAGCAGCACGATGTAAGTACAAAA...................................................................................................................2811.001100000
..............................TGC--AACGGTG-----TGTGGT-CCAAC-AAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............................................................................CACACAT---------------ATACACATGCATC----------------AAATTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................TACACATGCATC----------------AAATTCGCATA---AATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................GACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATC.....................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACG----AT--CTAC----ACGGATTTTACATTTATC.............................................................................2811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGCACGATGTAAGTACAAAACAC................................................................................................................2911.001100000
........................TGCAACTGC--AACGGTG-----TGTGGT-CCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................GCCCATCTATGTGTGGACGTGC-------------------------TCT-----------CATC...........................................................................................................................................................................................................................................................................................2911.001100000
.................................................................................................................................................................................................................................................................TGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATCGA-T.................................................................................................................................................................................................................2511.001100000
...................................................................TAC--GTGTGCACACACAT---------------ATACACATGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................................................T-CCAAC-AAATACATAC--GTGTGCACACACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACGATGTAAGTACAAAACACG----AT--C......................................................................................................2911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCACGATGTAAGTACAAAACAC................................................................................................................2711.001100000
................................................GTGGT-CCAAC-AAATACATAC--GTGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................CATCTATGTGTGGACGTGC-------------------------TCT-----------CATCT--------CC................................................................................................................................................................................................................................................................................2911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAC------CAATCGACACAACCAGCAGCA...................................................................................................................................2711.001100000
..........................................................C-AAATACATAC--GTGTGCACACACAT---------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................................................................................................................ATGCG--GCC----------------------------------CGC----------GCCCATCTATGTGTGGAC..........................................................................................................................................................................................................................................................................................................................................2911.001010000
...................TATCCTGCAACTGC--AACGGTG-----TGTGGT-CC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
....................................................................................................................................................TACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------............................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................................................................................................................TGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATCGA-TTAC..............................................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACAAAACACG----AT--CTAC----ACGGATT........................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACGATGTAAGTACAAAACACG----A..........................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................TGTGGACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------A.......................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TACAACAT------------------------------------GTACAAC------CAATCGACACAACC..........................................................................................................................................2911.001100000
...........................................................................................................................................................................................................................................................TGGACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------AT......................................................................................................................................................................................................................2711.001100000
.....................................................................................T---------------ATACACATGCATC----------------AAATTCGCATA---AAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................TATGTGTGGACGTGC-------------------------TCT-----------CATCT--------CCAAT.............................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCAGCACGATGTAAGTACAAAA...................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................CAACAT------------------------------------GTACAAC------CAATCGACACAAC...........................................................................................................................................2611.001100000
...........................................................................TGCACACACAT---------------ATACACATGCATC----------------AAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGTACAAAACACG----AT--CTAC----ACGG...........................................................................................2711.001100000
.....................................................................................................................................................ACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCC.........................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAAAACACG----AT--CTAC----ACGGATT........................................................................................2811.001100000
.................................................................................................................................................................................................................................................CATCTATGTGTGGACGTGC-------------------------TCT-----------CATCT--------C.................................................................................................................................................................................................................................................................................2811.001100000
................................................................ACATAC--GTGTGCACACACAT---------------ATACACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAAAACACG----AT--CTAC----ACGGATTT.......................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACAACCAGCAGCACGATGTAAGT.........................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................GACGTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATCGA-T.................................................................................................................................................................................................................2911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................AACAT------------------------------------GTACAAC------CAATCGACACAACCA.........................................................................................................................................2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAACCAGCAGCACGATGTAAGTACA......................................................................................................................2911.001100000
................................................................................................................................................................................................................................................................GTGC-------------------------TCT-----------CATCT--------CCAATTA----------------------------------C----------------ATCGA-..................................................................................................................................................................................................................2511.001100000
droBip1
TCATGC------ATGTGTATATCCTGCAACTGC--AACGGTG-----TGTGGT-CCAAC-AATTACATAC--GTGTGCACACACAT---------------ATACACATGCATC----------------AAATTCGCATA---AATTTACGTACACACAC----A--------------TATGCG--GCC----------------------------------CGC----------GCCCATTTATGTGTGGACGTGC-------------------------TAT-----------CATCT--------CCAACTA----------------------------------C----------------ATCGA-TTACAACAT------------------------------------GTACAAC------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACAGTTATCGAA-------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
ATG------TGTATGTGTATGTTCGACACCTGT------GC-------------------------------------ACACACACACACACCACGTATACATACACATGCGTC-----------------------CATT----TTG--CGTGCACACACACACACACACAACCACTCGTATGTG--GT----------------------------------------------------GCGTGTGGGTGGACGCCC-------------------------TCTCCTCT-CTCATCATCA-----ACAACAATTC----------------------------------CA--------T--------CGA-TAACA------------ACAACAATTACAACAACAACAACAACATGTACAACAACCAACAACCGACACAACCAGCAGCACGATGTAAGTACGAAACACA----ATC-CTAC----ACCGATTTTGCATTTATCCAAAAT-A-----------------------------AAATACA---ACA--------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
ATG------TGTATGTGTATGTCCTGCAACTGTGCAACTGTG-TGTGTGTCAATTGAAA----------C--GCGTGCACGCACAT---------------ATACACATGCATC-------------------CATGCATCTGTCATGCACGTGCACACACAC--A--------------ACTGTG--GCA--------------------------------ATTGG----------GCCCGTGTATGTGTGAACGTGGAT--------------------C--CTT-----------CATCA-AAAAACAACAACTA----------------------------------C----------------ATCGA-CAACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATACCAAAAAAA-----------------------------AAAAAAAAAACAAGCAATATACAAAGTTTTTAAAAATCCSizeHit CountTotal NormTotal
No Reads
droEle1
ATG------TGTATGTGTATGTCCTGCTACTGT------GTC-----TGTAAT-CGTAC----------C--GCGTGCACGCACAT---------------ATACACATGCAT---------------------TCGCATC---CATACACGTGCACACACAC--A--------------AATGTG--GCA----------------------------------CGT----------GCCCGTGTATGTGTGGACGTGGT---------------------C--CTT-----------CATCT--------ACAACTA----------------------------------C----------------ATCGA-CTACAACAT------------------------------------GTACAAC------CAAACGACACAACCAGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATCCAAAAA-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATG------TGTATGTGTATGTCCTGCTACTGT------GTC-----TGTAAT-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCAT---------------------TCGCATC---CATACACGTGCACACAC----A--------------TATGTG--GCA----------------------------------CGT----------GCCCGTGTATGTGTGGACGTGGC---------C--------------TCT-----------CATCT--------ACAACTA----------------------------------C----------------ATCGAATTACAACAT------------------------------------GAACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
ATG------TGTATGTGTATGTCCTGCTACTGT------GTCT---GTGTCAA-TCCAC----------CATGCGTGCACGCACAT---------------ATACACATGCATA-------------------TTCGCATC---CATACACGTGCACACACAC--A--------------TCCGTG--GCCGGT--------------------------G--------CACATGTTCGCCCGTGTATGTGTGGACGTGGCT----CTC----------------TCT-----------CATCA-----ACAAAAACTA----------------------------------CATCTGAACATCCGAACATCGA-CTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
ATG------TGTATGTGTATGTCCTGCTACTAT------GTA-----TGTAAA-TCAAC----------CATGCGTGCACGCACAT---------------ATACACATGCATA-------------------CTCGCATC---CATGCACGTGCACACACAC--A--------------TATGTG--GCTGGT--------------------------G--------TACCTGTATGCCCGTGTATGTGTGGACGTGGCC----CTC----------------TTT-----------CATCA-----ACAAAAACTA----------------------------------CA--------TCCGAACATCGA-CTACAACAT------------------------------------GTACAAC------TAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droEug1
ATG------TGTATGTGTATGTCCTGCAATTGT------GTA-----TGTCAA-TCAAC----------C--GTGTGCACGCACAT---------------ATACACATGCATATATTATATATATATCT---CTCGCATCTCGCATACACGTGCACACACACACA--------------TCTGTG--GT----TGCCCATGC-CGA----CTATGTCCTA----TGT----ATGCCCGCCCGTGTATGTGTGGACGTGGA------TATCTC------------CT----ATTATCATCATCTCAACAACAACAACTACTACAACAACAATAACAACAACAATAAAAACCCACA--------TCTGAACATCGA-CAACAAC------------------------AACAACAACAACATGTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACACTAAAT--CTACACACACTAATTTTGCATTTATCCTAAAAAAAACTAAAAAAAACAAAACAAAAAAGTATAAAAAACA---AAA--------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACACACA--------------TATGTG--ACCGGTTTCCGGTGC--------------CCG------GT----------GTCCGTGTATGTGTGAACGTGACT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................TGTCCTGCTACTGT------GTC-----TGTTAA-TCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGTGTATGTCCTGCTACTGT------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGTGTATGTCCTGCTACTGT------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------CAAACGACACAACCTGCAGCACGAT...............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATC---CTTGCACGTGCACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATGTGTATGTGTATGTCCTGCTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAACACT----GT--CTAC----ACTGAT.........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGTGAACGTGACT----ATATCTCTA------TAT----------A...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................C--------------CCG------GT----------GTCCGTGTATGTGTGAACG.........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACGAAACACT----GA--A......................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------AACGCATC---CTTGCACGTGCACACACAC--A--------------TATGTG--CCCGGCTTCCGGTGC--------------CCG------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAAAAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................GTATGTCCTGCTACTGT------GTC-----T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
droSec2
CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACAC--A--------------TATGTG--CCCGGTTTCCG---------------------------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAAAAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCGAAAA----------------------------------------------------------------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTGT---CTGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACAC--A--------------CATGTG--GCCGGCTTCCGGTGG--------------CCG------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTATCAATATAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGAAACACT----GT--CTAC----ACT............................................................................................2211.00101000000000
......ATGTGTATGTGTATGTCCTGCTACTGT------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
CCATGCATGTGTATGTGTATGTCCTGCTACTGT------GTC-----TGTTAA-TCAAC----------C--GCGTGCACGCACAT---------------ATACACATGCATA-------------------ATCGCATC---CTTGCACGTGCACACACAC--A--------------TATGTG--GCCGGTTTCCGGTGTCCGGTAACCGGTGTCCG------GT----------GTCCGTGTATGTGTGAACGTGGCT----ATATCTCTA------TAT----------ATCATCATCA-----ACAACAACTA----------------------------------CA--------TCCGAACATCGA-TTACAACAT------------------------------------GTACAAC------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATCCAAAAA----------------------------------------------------------------------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................TGTATGTGTGAACGTGGCT----ATATCTCT........................................................................................................................................................................................................................................................................................................................2711.0011000000
droWil2
GTATGC------ATGTGTATGTCCTGCTGC-----AATTGTG-----TGTTGC-CC--CTATGCACATGA--ATAT----GCACAT-------CTGT----ACCCACATATAT---------------------CTATATC---TATATATCTATATATATAT--A--------------TATGTATATCT--TTT------------------------ATATATGTATGT------ATATTTATATGTATATACATGAATACATATATATCTA------TA--TCT-----------CATCT--------ACAA------------------------------------------------CTAAACATCGA-CAACTACATGTACAACAACAACAACAACAACAACAAAAATAAAATATATA-TATATATCAACCAACACCACCAACAGCACGATGTAAGTACGAAACACA----ATCTCTAC----ACCGAT-TTGCATTTCTCAAATTT----------------------------------------------------------------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TT--GC------ATGTGTATGTGCTTCAATTGA------ATG-----TGTTAT-CCAA--------------------------------------------TACACATG-----------------------------------TTGCACATACATATGCAT---------------------------------------------------------------------------------------------------ACA--------------TATAT--AT-----------CATCT--------ACAACTA----------------------------------C----------------ATCG-------ACAT------------------------------------GTACAAC------AA-ATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTTTCAAAA-------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCACGATGTAAGTACGAAACACA----...........................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAACAGCACGAT...............................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
GAATAT------GTGTGTATGTGTTGACAC-GC--ACACGCA-CACACACCAAATG--------------------GCACACACAT-------ATGCATACATACAT---------------------------ATATATC---CATATATATATGTATATAT--A----------------------TCT---CA------------------------ATATATGTATACATATATATCTGTATATGTAT------------------------------A--ACT-----------CATCA--------ACAACTA----------------------------------C----------------ATCG-------ACAT------------------------------------GTACAAC------AA-ATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAAATTGCATTTTTCCAAA-------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAC------AA-ATTTCAACACCAACAG.....................................................................................................................................2511.001100000
droGri2
TTATGC------ATGTGTATGTGCTTCAATTGT------ATGT-ACGTGTTAT-CCAA---------------------CACACAT---------------ATT-------------------------------------------GCACATACATATGCAT---------------------------------------------------------------------------------------------------ACA--------------TATATATCT-----------CATCT--------ACAA-------------------------------------C----------------ATCG-------ACAT------------------------------------GTACAAC------AA-ATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTATCAAAA-------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:02 AM