ID:

dan_1025

 Coordinate:

scaffold_12948:330037-330187 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.1 -5.9 -5.5

Flybase annnotation

exon [dana_GLEANR_5080:19]; CDS [Dana\GF21581-cds]; intron [Dana\GF21581-in]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------######---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTACATCGATTACAACATGTACAACCAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACGATCTACACGGATTTTACATTTATCGAACTTTTCGATGTTTACCACTCAGTGACTTTAGTTTCTTAAACTGCTTAAGCTGCAAAATTATTGCTTTCCCCTTCCAAGCTTATTTAATCCTAACTCTATTATTTTACTATCACGATCTTTATTTCTTTGTCTTATAAAATATGTTAAATTCTTTTACA
***************************************************..(((...((((((((........(((.........))).......))).)))))...)))....*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V039
embryo
 V055
head
...................................................TAAGTACAAAACACGATCTACACGGATTT........................................................................................................................................................................... 29 0 1 7.00 7 7 0 0 0 0
...................TACAACCAATCGACACAACCAGCAGCAC............................................................................................................................................................................................................ 28 0 1 6.00 6 5 0 1 0 0
...................................................TAAGTACAAAACACGATCTACACGGA.............................................................................................................................................................................. 26 0 1 5.00 5 5 0 0 0 0
......................AACCAATCGACACAACCAGCAGCACGA.......................................................................................................................................................................................................... 27 0 1 5.00 5 5 0 0 0 0
..........TACAACATGTACAACCAATCGACACAAC..................................................................................................................................................................................................................... 28 0 1 4.00 4 4 0 0 0 0
.........................................................................................CAAACGTTTCGATGTTTACC.............................................................................................................................................. 20 2 1 3.00 3 0 3 0 0 0
.................TGTACAACCAATCGACACAACCAGCAGC.............................................................................................................................................................................................................. 28 0 1 3.00 3 3 0 0 0 0
.........................CAATCGACACAACCAGCAGCACGATG........................................................................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0 0
........................................................................................TCGAACTTTTCGATGTTTACCACTCAGT....................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
...................................................................................................GATGTTTACCACTCAGTGACTTTAGT.............................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
...................................................................................................GATGTTTACCACTCAGTGACTTTAGTT............................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0
..............ACATGTACAACCAATCGACACAACC.................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
............................TCGACACAACCAGCAGCACGATGTAAG.................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................TTTACTATGACGATCTTTATTTCTTTGTC........................... 29 1 1 1.00 1 1 0 0 0 0
..............................................................CACGATCTACACGGATTTTACATTTATC................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
....................................ACCAGCAGCACGATGTAAGTACAAAACAC.......................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.......................................................................................................TTTACCACTCAGTGACTTTAGTTTCTTA........................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................AACTTTTCGATGTTTACCACTCAGTGAC.................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
....................ACAACCAATCGACACAACCAGCAGCAC............................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.........................CAATCGACCCAACCAGCAGCACGATG........................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0
........................................GCAGCACGATGTAAGTACAAAACACGATC...................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
......................................CAGCAGCACGATGTAAGTACAAAACAC.......................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TAAGCTGCAAAATTATTGCTTTCCCC....................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TAAGCTGCAAAATTATTGCTTTCCCCT...................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................ACCACTCAGTGACTTTAGTTTCTTAAAC..................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...............CATGTACAACCAATCGACACAACCAGCA................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................AAATTATTGCTTTCCCCTTCCAAGCT.............................................................................. 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................TCGATGTTTACCACTCAGTGACTTTAGT.............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
................ATGTACAACCAAACGGCACCAC..................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................TATTATTTTACTATCACGATCTTTATT................................... 27 0 1 1.00 1 1 0 0 0 0
...................TACAACCAATCGACACAACCAGCAGCA............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
................................................................................................TTCGATGTCTACCACTCAGTGACTTTAGT.............................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0
.......................................................................................................TTTACCACTCAGTGACTTTAGTTTCTT......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
....................................................AAGTACAAAACACGATCTACACGGATT............................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
........................................GCAGCACGATGTAAGTACAAAACACGA........................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................AATTATTGCTGTCCCCTCC.................................................................................... 19 2 1 1.00 1 0 1 0 0 0
.....................................................................TACACGGATTTTACATTTATCGAACTTT.......................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...............................................................................................TTTCGATGTTTACCACTCAGTGACTT.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.......................................................................CACGGATTTTACATTTATCGAACTTT.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..........TACAACATGTACAACCAATCGACACAACC.................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.............................................................................................CTTTTCGATGTTTACCACTCAGTGACTT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................TGCAAAATTATTGCTTTCCCCTTCCAAGC............................................................................... 29 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................TATTTTACTATCACGATCTTTATTTCTT............................... 28 0 1 1.00 1 1 0 0 0 0
.....................................CCAGCAGCACGATGTAAGTACAAAACAC.......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.....................................................................................................TGTTTACCACTCAGTGACTTTAGTTTCT.......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...................................AACCAGCAGCACGATGTAAGTACAAAA............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
............CAACATGTACAACCAATCGACACAAC..................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
........................CCAATCGACACAACCAGCAGCACGATG........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.................................................TGTAAGTACAAAACACGATCTACACGG............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.......................................................TACAAAACACGATCTACACGGATTT........................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.....TCGATTACAACATGTACAACCAATCGAC.......................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...................................................TAAGTACAAAACACGATCTACACGGATT............................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
.......................ACCAATCGACACAACCAGCAGCACGATG........................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
.......................ACCAATCGACACAACCAGCAGCACGA.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................TCCCCTTCCAAGCTTATTTAATCCTAAC................................................................ 28 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................AACTCTATTATTTTACTATCACGATCT........................................ 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................TACCACTCAGTGACTTTAGTTTCTTAAAC..................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.............................................ACGATGTAAGTACAAAACACGATC...................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.....................................................AGTACAAAACACGATCTACACGGATTT........................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................AACCAATCGACACAACCAGCAGCACGATG........................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0
..........TACAACATGTACAACCAATCGACACA....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.............................CGACACAACCAGCAGCACGATGTAAGT................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..................................CAACCAGCAGCACGATGTAAGTACAAAA............................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.............AACATGTACAACCAATCGACACAACCA................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............................GACACAACCAGCAGCACGATGTAAGTACA................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0
..............................................................................................TTTTCGATGTTTACCACTCAGTGACTT.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................TATGTGAAATTCTTTTAC. 18 1 2 0.50 1 0 0 0 1 0
....................................................................................................................................................AATTATTGCTGTCCCCCACC................................................................................... 20 3 6 0.33 2 0 2 0 0 0
...................TACAACCATTCGAAACAACT.................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 1
....................................................................................................................................................AATTATTGCTGTCCCTTACCA.................................................................................. 21 3 4 0.25 1 0 1 0 0 0
..............................................TGATGGAAGTACGAAACACG......................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1
..........................AAGCGACACAACCCGCACC.............................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0
.........................................................................................................................TAGTTTCTTCAACTTCTTATGCT........................................................................................................... 23 3 20 0.05 1 0 0 0 0 1
....................................................................................................................................................AATTATTGCTGTCCCCCAC.................................................................................... 19 3 20 0.05 1 0 1 0 0 0
..........................................................................................................................AGTTTCTTAATCTGATTA............................................................................................................... 18 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AATGTAGCTAATGTTGTACATGTTGGTTAGCTGTGTTGGTCGTCGTGCTACATTCATGTTTTGTGCTAGATGTGCCTAAAATGTAAATAGCTTGAAAAGCTACAAATGGTGAGTCACTGAAATCAAAGAATTTGACGAATTCGACGTTTTAATAACGAAAGGGGAAGGTTCGAATAAATTAGGATTGAGATAATAAAATGATAGTGCTAGAAATAAAGAAACAGAATATTTTATACAATTTAAGAAAATGT
***************************************************************************************************************************************..(((...((((((((........(((.........))).......))).)))))...)))....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 V039
embryo
 V055
head
 M044
female body
...........................................................................................TTGCAAAGCTACAAATGG.............................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0
...............................................................................................AAAGGTACTAGTGGTGAGTC........................................................................................................................................ 20 3 2 0.50 1 0 1 0 0 0
................................ATGTTGGGCGTTGTGCTACA....................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0
................................GTGTTGGGCGTCGGGATACA....................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0
.....................................................................................................................................................................................................ATGTTGGTGCTAGAAATA.................................... 18 2 7 0.14 1 0 0 1 0 0
.............................................................................................................................GAGATTTTGACGAATTCG............................................................................................................ 18 2 8 0.13 1 0 0 0 0 1
........................................................................................AGCTTCAAAAGCTTCAAAT................................................................................................................................................ 19 2 11 0.09 1 1 0 0 0 0
................................GTGTTGGTCGTTGGTCTACA....................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 1 0
............................................................................................TGTAAAGCTTCAAATGCTG............................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1
.................................................................................................................................................................................................................GAGAGAAAGAAACAGAATA....................... 19 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:329987-330237 - dan_1025 TTAC--------ATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACATTTATC-GAA--------------------------------------------------------CTTTTCGATGTTT-------------ACC---ACTCAGTGACTTTAGTTTCTTAAACT-----GCTTAA--GCTGCAAAATT-ATTGCTTTCCCCTT--------CCAAGCTTATTTAAT-------------CCT--------------------AAC--TCTAT-----------------------------------TA-TTT--TACTATC----------ACGA----------------------------TCTTTATTTCTTTGTCT-T-AT----------------------------AAAATATGTTAAATTCTTTTA-----------------------------------------CA--
droBip1 scf7180000395643:31730-31975 + CTAC--------ATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACAGTTATC-GAA--------------------------------------------------------CTTGTCGATGCTT-------------ACG---ACTCAGTGAGCTTAGATTCTTAAACT-----ACTTAA--GCCGCAAAATT-ATTGCTTCC---------------AAGCTTATTTAAT-------------CCAATC------------T------C--TCTAT-----------------------------------T---TTTTTACTTTT----------AT----GA------------------------TTTTTATTCGATTGTAT-T-AT----------------------------ACAATCTGTTTTATCTTTTAA-----------------------------------------CA--
droKik1 scf7180000302441:121287-121627 + TTCC--------ATCG-ATAACAACAACAATTACAACAACAACAACAACATGTACAACAACC-----------------AACAACCGACACAACCAGCAGCACGATGTAAGTACGAAACACA----ATC-CTAC----ACCGATTTTGCATTTATC-CAAA------------------------------------------ATAAAATACAACAATTTTCGATGTGTA------------AAC---GATCAAAGAACTTAGATCTCTATCTC-TCCAGCTTAA--GCCGCTAAGTA-ATTGCCTTCCACT-------AAACAAGCTTATTA-TTATTATTCTTAAATTCGAGCCTTCTTATTCCCCACCCACCCATCTCT--------------------------------------C-T--CTCTCTC------T---GTTAT-GATTTCG--------------A--GC-TCTAGTTTTGATTTAC-----------------------------------------------CAGTTGAAAGCAAAT--------------------------A-CTATATG--
droFic1 scf7180000454073:126227-126516 + CTAC--------ATCG-ACAACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATACCAAAAAAAAA-AAAAAAAACAA-GCAATATACAAAGTTTTTAAAAAT-----------CCTTTTCGATGTGT-------------ACC---AATCAATGAACTTAGATTC------C-----GCTTAA--ATCGCTAAGTA-ATGGCCTTCCACTA----T-AAAAAAGCTTATTAATT-------------ACGATC------------T-CTTAAC----------------------------------------------TTTCCTCTATC----------ATTT-CG-TTTCGCCTAAA----AGACA--CA-CCTAGTTTCATTT-A---------------------------------------------------CTTT-----------------------------------------GA--
droEle1 scf7180000491242:256227-256517 + CTAC--------ATCG-ACTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCAGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTT-TTGATGTGT-------------ACC---AATCAATGAACTTAGATTC------C-----GCTTA---ACTGCTAAGTAAATGGCCTTCCACT-------AAAAAAGCTTATTAATT-------------ACGATC------------C-TCTATC----------------------------------------------TTTCCTCTTTC----------ATTTT-G--TTCTCCTAA-----A-ACA--GA-CTTAGTTTCATTT-ATTT-GTT------------GTCGAC-------------------------------AGCAAAGCGTCATATTTGCAAAAATATATCTATATTTATACC--
droRho1 scf7180000763611:108334-108580 + CTAC--------ATCGAATTACAAC---ATGAACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------ACGTTTCGATGTGT-------------ACC---AATCAATGAACTTAGATTC------C-----GCTTAA--ACTGCTAAGTAAATGGCCTTCCACT-------AAAAAAGCTTATTAATT-------------ACGATC------------C-TTTATC--TTTAT--------------------------------------CTTTCCTCTTTC----------CTTTT-G--TTCGCCTAA-----A-ACA--GA-CCTAGTTTCGTTTTA----------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:624022-624304 - --AC--------ATCG-ACTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------ACTTTTCAATGTGTAATT-CCAACAATACC---AATCAATGAACCTAGATTCTTAAAACCTAATGCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT------AAAAAAGCTTATTAATT-------------GCGACCATTTTTAATC--C-T-TAA---------------------------------------------------CTCTGTC----------GTTTTCG-TTTCGCCTTA-----A-ACA--GATCCTAGTTTCATTTTAT-T-ATT------------ATCGTC----------------------------TA-----------------------------------------CT--
droTak1 scf7180000414222:55330-55625 + --AC--------ATCG-ACTACAAC---ATGTACAAC--------------------------------------------TAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTAATA-CCAATAATACC---AATCAATGAACCTAGATTCCTAAAACTTAATGCTTAAA-AATGCTAAGTA-ATGACCTACTACTT------AAAAAAGCTTATTAATT-------------ACGATATTTTTTC--AACC-TTTGAC--TTTAA-------------------------------------------CTCTATT----------GTTTTCT-TTTCGCCTA---------CA--GA-CCTAGTTTCATTTTAT-T-ATT------------ATCAACTACTCAC--------------------TA------------------------------------------CGAA
droEug1 scf7180000409008:1246495-1246823 - CAAC--------AACA-ACAACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACACTAAAT--CTACACACACTAATTTTGCATTTATCCTAAAAAAAACTAAAAAAAACAAAACAA----AAAAGTA---------TAAAAAACAAAATGTTTCAATGTGTATCTACCAGCAATACC---AATCAATGAACTTAGATTCTTAAAAC-----GCTTAAAAAACGCTAAGTA-ATGGCCTTCCACCT------AAAAAAGCTTATTAATT-------------ACGATCTATCT----AACCATCTAACCATCTAT--------------------------------------C-T--ATCTAAC----------ATTTTCGTTTTCGCCTAACAAAAA-TCA--GA-AATAGTTTCATT-------------------------------------------------------------------------------------------------------
dm3 chrX:11853836-11854165 - CTACATCCGAACATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATTT-TC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTAT-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTGTGCCTAAG----A-ACATCTA-TCTAGTTTCATTTTAG-TTCTTATCACATCAATTATTA---ACTCACCGACCATTAGCTCAATTTTTC-------------------------------------------CGTA
droSim2 x:11229667-11229943 - CTACATCCGAACATCG-ATTACAAA---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATT--CC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTAT-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTGTGCCTAAG----A-ACATCTA-CCTAGTTTCATTTTAG---------------------------------------------------------------------------------------------------
droSec2 scaffold_53:70545-70810 - CTACATCCGAACATCG-ATTACAAA---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CGAA------------------------------------------A-----------AGTTTTCAATGTGTATT--CC---AATACC---AATCGATGAATTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGA---------------------------ACGATCTAA---------C-TCTAAC--TCTAT-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTGTGCCTAAG----A-ACATCTA-CCTAGTTTCATTTTAG---------------------------------------------------------------------------------------------------
droYak3 X:14845689-14846052 + CTACATCCGAACATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATT--CC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TCAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTATTCACTATTCACTATTCACTTTTAACTATGAACTATTGACTT--TTCTATC----------ATTTTCG-TTGTGCCTAAG----A-ACATCTG-CCTAGTTTCATTTTAG-TTCTTACTACAATAATTATTA---ACTCACCGACAATTAGCTCCATCTTTTTC-----------------------------------------CG--
droEre2 scaffold_4690:3324004-3324279 + CTACATCCGAACATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATT--TC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTAC-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTACGCCTAAG----A-ACATCTA-CCTAGTTTCATTTTA----------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:10268178-10268342 - CTA------AACATCG-ACAACTAC---ATGTACAACAACAACAACAACA---ACAACAAAAATAAAATATATATATATATCAACCAACACCACCAACAGCACGATGTAAGTACGAAACACA----ATCTCTAC----ACCGAT-TTGCATTTCTC-AAAT------------------------------------------T-----------TTTTTTCAATGTGT-------------ACC---AATCGATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:8678809-8679048 - dvi_13661 CTAC--------ATCG-------AC---ATGTACAAC---------------------------------------------AAATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTTTC-AAAA------------------------------------------T----------------CTTATGTGT-------------TCG---AATCAATGATTTTAGATTT------C-----GCTTTT--ACTGCTAAGCA-----CCTTTCACTT-ACC--TAATAAGCTTATTAGAT------------------C------------T-TATATT----------------------------------------------TTTGATCTTATATATACACATAC----AA------------------------TTTCTACACA--CATTT-T-TT----------------------------AGTAAGTGTTGCATTTTTTTT-----------------------------------------CT--
droMoj3 scaffold_6473:12688972-12689183 - CTAC--------ATCG-------AC---ATGTACAAC---------------------------------------------AAATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAAATTGCATTTTTC-CAAA------------------------------------------T-------------CCTACTATGTGT-------------ACAAAAAGTCAAATGATTTAGCTTT------C-----GCTTTT--ACTGCTAAGCA-CTTTTCACTTACTT-ACCTAAACTAAGCTTATTAGAT-------------TTTATA------------C-TTTTCC-----AT-----------------------------------AACATT--CTCTA---------------------------------------------------TTCATTT------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:11425668-11425852 - C-----------ATCG-------AC---ATGTACAAC---------------------------------------------AAATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTATC-AAAA----------------------------------------------------------TCCTATGTGT-------------AAA---AATCGATGATTATAGATTT------C-----GCTTTT--ACTGCTAACCA-----CCTCTCCACTTACT--TAATAAGCTTTGTAAAT------------------C---------------------------------------------------------------------------------------TTTT-TG-------------------------------TTTTT-----------------------------------------------------CTTTTGT-----------------------------------------AA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTAC--------ATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACATTTATC-GAA--------------------------------------------------------CTTTTCGATGTTT-------------ACC---ACTCAGTGACTTTAGTTTCTTAAACT-----GCTTAA--GCTGCAAAATT-ATTGCTTTCCCCTT--------CCAAGCTTATTTAAT-------------CCT--------------------AAC--TCTAT-----------------------------------TA-TTT--TACTATC----------ACGA----------------------------TCTTTATTTCTTTGTCT-T-AT----------------------------AAAATATGTTAAATTCTTTTA-----------------------------------------CA--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................TAAGTACAAAACACG----AT--CTAC----ACGGATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2917.007700000
...............................TACAAC--------------------------------------------CAATCGACACAACCAGCAGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2816.006500001
...........................................................................................................TAAGTACAAAACACG----AT--CTAC----ACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.005500000
..................................AAC--------------------------------------------CAATCGACACAACCAGCAGCACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.005500000
...................TACAAC---ATGTACAAC--------------------------------------------CAATCGACACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.004400000
.............................TGTACAAC--------------------------------------------CAATCGACACAACCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.003300000
.................................................................................CAATCGACACAACCAGCAGCACGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
..........................................................................................................................................................TC-GAA--------------------------------------------------------CTTTTCGATGTTT-------------ACC---ACTCAGT...............................................................................................................................................................................................................................................................................................................................................2812.002200000
..............................................................................................................................................................................................................................GATGTTT-------------ACC---ACTCAGTGACTTTAGT......................................................................................................................................................................................................................................................................................................................................2612.002200000
..............................................................................................................................................................................................................................GATGTTT-------------ACC---ACTCAGTGACTTTAGTT.....................................................................................................................................................................................................................................................................................................................................2712.002200000
.......................AC---ATGTACAAC--------------------------------------------CAATCGACACAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................TCGACACAACCAGCAGCACGATGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................CACG----AT--CTAC----ACGGATTTTACATTTATC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................ACCAGCAGCACGATGTAAGTACAAAACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..................................................................................................................................................................................................................................TTT-------------ACC---ACTCAGTGACTTTAGTTTCTTA................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................AA--------------------------------------------------------CTTTTCGATGTTT-------------ACC---ACTCAGTGAC............................................................................................................................................................................................................................................................................................................................................2811.001100000
................................ACAAC--------------------------------------------CAATCGACACAACCAGCAGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................GCAGCACGATGTAAGTACAAAACACG----AT--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..............................................................................................CAGCAGCACGATGTAAGTACAAAACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................TAA--GCTGCAAAATT-ATTGCTTTCCCC.......................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................................TAA--GCTGCAAAATT-ATTGCTTTCCCCT......................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................ACC---ACTCAGTGACTTTAGTTTCTTAAAC.............................................................................................................................................................................................................................................................................................................................2811.001100000
........................C---ATGTACAAC--------------------------------------------CAATCGACACAACCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................AAATT-ATTGCTTTCCCCTT--------CCAAGCT......................................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................................................TCGATGTTT-------------ACC---ACTCAGTGACTTTAGT......................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................TAT-----------------------------------TA-TTT--TACTATC----------ACGA----------------------------TCTTTATT............................................................................................................2711.001100000
...............................TACAAC--------------------------------------------CAATCGACACAACCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................TTT-------------ACC---ACTCAGTGACTTTAGTTTCTT.................................................................................................................................................................................................................................................................................................................................2711.001100000
............................................................................................................AAGTACAAAACACG----AT--CTAC----ACGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................GCAGCACGATGTAAGTACAAAACACG----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................................................................TAC----ACGGATTTTACATTTATC-GAA--------------------------------------------------------CTTT..................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................TTTCGATGTTT-------------ACC---ACTCAGTGACTT..........................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................................................................C----ACGGATTTTACATTTATC-GAA--------------------------------------------------------CTTT..................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................TACAAC---ATGTACAAC--------------------------------------------CAATCGACACAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
........................................................................................................................................................................................................................CTTTTCGATGTTT-------------ACC---ACTCAGTGACTT..........................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................TGCAAAATT-ATTGCTTTCCCCTT--------CCAAGC.......................................................................................................................................................................................................................................................................2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TTT--TACTATC----------ACGA----------------------------TCTTTATTTCTT........................................................................................................2811.001100000
.............................................................................................CCAGCAGCACGATGTAAGTACAAAACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................TGTTT-------------ACC---ACTCAGTGACTTTAGTTTCT..................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................AACCAGCAGCACGATGTAAGTACAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................CAAC---ATGTACAAC--------------------------------------------CAATCGACACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................C--------------------------------------------CAATCGACACAACCAGCAGCACGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................TGTAAGTACAAAACACG----AT--CTAC----ACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............................................................................................................TACAAAACACG----AT--CTAC----ACGGATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............TCG-ATTACAAC---ATGTACAAC--------------------------------------------CAATCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................TAAGTACAAAACACG----AT--CTAC----ACGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................AC--------------------------------------------CAATCGACACAACCAGCAGCACGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................AC--------------------------------------------CAATCGACACAACCAGCAGCACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................................................................................................................TCCCCTT--------CCAAGCTTATTTAAT-------------CCT--------------------AAC--.....................................................................................................................................................................................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................AAC--TCTAT-----------------------------------TA-TTT--TACTATC----------ACGA----------------------------TCT.................................................................................................................2711.001100000
....................................................................................................................................................................................................................................T-------------ACC---ACTCAGTGACTTTAGTTTCTTAAAC.............................................................................................................................................................................................................................................................................................................................2911.001100000
.....................................................................................................ACGATGTAAGTACAAAACACG----AT--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................AGTACAAAACACG----AT--CTAC----ACGGATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................AAC--------------------------------------------CAATCGACACAACCAGCAGCACGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...................TACAAC---ATGTACAAC--------------------------------------------CAATCGACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................CGACACAACCAGCAGCACGATGTAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................CAACCAGCAGCACGATGTAAGTACAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................AAC---ATGTACAAC--------------------------------------------CAATCGACACAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................GACACAACCAGCAGCACGATGTAAGTACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.........................................................................................................................................................................................................................TTTTCGATGTTT-------------ACC---ACTCAGTGACTT..........................................................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
CTAC--------ATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAATCGACACAACCAGCAGCACGATGTAAGTACAAAACACG----AT--CTAC----ACGGATTTTACAGTTATC-GAA--------------------------------------------------------CTTGTCGATGCTT-------------ACG---ACTCAGTGAGCTTAGATTCTTAAACT-----ACTTAA--GCCGCAAAATT-ATTGCTTCC---------------AAGCTTATTTAAT-------------CCAATC------------T------C--TCTAT-----------------------------------T---TTTTTACTTTT----------AT----GA------------------------TTTTTATTCGATTGTAT-T-AT----------------------------ACAATCTGTTTTATCTTTTAA-----------------------------------------CA--SizeHit CountTotal NormTotal
No Reads
droKik1
TTCC--------ATCG-ATAACAACAACAATTACAACAACAACAACAACATGTACAACAACC-----------------AACAACCGACACAACCAGCAGCACGATGTAAGTACGAAACACA----ATC-CTAC----ACCGATTTTGCATTTATC-CAAA------------------------------------------ATAAAATACAACAATTTTCGATGTGTA------------AAC---GATCAAAGAACTTAGATCTCTATCTC-TCCAGCTTAA--GCCGCTAAGTA-ATTGCCTTCCACT-------AAACAAGCTTATTA-TTATTATTCTTAAATTCGAGCCTTCTTATTCCCCACCCACCCATCTCT--------------------------------------C-T--CTCTCTC------T---GTTAT-GATTTCG--------------A--GC-TCTAGTTTTGATTTAC-----------------------------------------------CAGTTGAAAGCAAAT--------------------------A-CTATATG--SizeHit CountTotal NormTotal
No Reads
droFic1
CTAC--------ATCG-ACAACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATACCAAAAAAAAA-AAAAAAAACAA-GCAATATACAAAGTTTTTAAAAAT-----------CCTTTTCGATGTGT-------------ACC---AATCAATGAACTTAGATTC------C-----GCTTAA--ATCGCTAAGTA-ATGGCCTTCCACTA----T-AAAAAAGCTTATTAATT-------------ACGATC------------T-CTTAAC----------------------------------------------TTTCCTCTATC----------ATTT-CG-TTTCGCCTAAA----AGACA--CA-CCTAGTTTCATTT-A---------------------------------------------------CTTT-----------------------------------------GA--SizeHit CountTotal NormTotal
No Reads
droEle1
CTAC--------ATCG-ACTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCAGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTT-TTGATGTGT-------------ACC---AATCAATGAACTTAGATTC------C-----GCTTA---ACTGCTAAGTAAATGGCCTTCCACT-------AAAAAAGCTTATTAATT-------------ACGATC------------C-TCTATC----------------------------------------------TTTCCTCTTTC----------ATTTT-G--TTCTCCTAA-----A-ACA--GA-CTTAGTTTCATTT-ATTT-GTT------------GTCGAC-------------------------------AGCAAAGCGTCATATTTGCAAAAATATATCTATATTTATACC--SizeHit CountTotal NormTotal
No Reads
droRho1
CTAC--------ATCGAATTACAAC---ATGAACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------ACGTTTCGATGTGT-------------ACC---AATCAATGAACTTAGATTC------C-----GCTTAA--ACTGCTAAGTAAATGGCCTTCCACT-------AAAAAAGCTTATTAATT-------------ACGATC------------C-TTTATC--TTTAT--------------------------------------CTTTCCTCTTTC----------CTTTT-G--TTCGCCTAA-----A-ACA--GA-CCTAGTTTCGTTTTA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
--AC--------ATCG-ACTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------ACTTTTCAATGTGTAATT-CCAACAATACC---AATCAATGAACCTAGATTCTTAAAACCTAATGCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT------AAAAAAGCTTATTAATT-------------GCGACCATTTTTAATC--C-T-TAA---------------------------------------------------CTCTGTC----------GTTTTCG-TTTCGCCTTA-----A-ACA--GATCCTAGTTTCATTTTAT-T-ATT------------ATCGTC----------------------------TA-----------------------------------------CT--SizeHit CountTotal NormTotal
No Reads
droTak1
--AC--------ATCG-ACTACAAC---ATGTACAAC--------------------------------------------TAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTAATA-CCAATAATACC---AATCAATGAACCTAGATTCCTAAAACTTAATGCTTAAA-AATGCTAAGTA-ATGACCTACTACTT------AAAAAAGCTTATTAATT-------------ACGATATTTTTTC--AACC-TTTGAC--TTTAA-------------------------------------------CTCTATT----------GTTTTCT-TTTCGCCTA---------CA--GA-CCTAGTTTCATTTTAT-T-ATT------------ATCAACTACTCAC--------------------TA------------------------------------------CGAASizeHit CountTotal NormTotal
No Reads
droEug1
CAAC--------AACA-ACAACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACACTAAAT--CTACACACACTAATTTTGCATTTATCCTAAAAAAAACTAAAAAAAACAAAACAA----AAAAGTA---------TAAAAAACAAAATGTTTCAATGTGTATCTACCAGCAATACC---AATCAATGAACTTAGATTCTTAAAAC-----GCTTAAAAAACGCTAAGTA-ATGGCCTTCCACCT------AAAAAAGCTTATTAATT-------------ACGATCTATCT----AACCATCTAACCATCTAT--------------------------------------C-T--ATCTAAC----------ATTTTCGTTTTCGCCTAACAAAAA-TCA--GA-AATAGTTTCATT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CTACATCCGAACATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATTT-TC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTAT-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTGTGCCTAAG----A-ACATCTA-TCTAGTTTCATTTTAG-TTCTTATCACATCAATTATTA---ACTCACCGACCATTAGCTCAATTTTTC-------------------------------------------CGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................AAGTA-ATGGCCTTCCACCT----TAAGAAAAA........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AC--------------------------------------------CAAACGACACAACCTGCAGCACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTCTATC----------ATTTTCT-TTGTGCCTAA..................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTCATTTTAG-TTCTTATCAC........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TACGAAACACT----GT--CTAC----ACTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATC----------ATTTTCT-TTGTGCCTAAG----A-AC.........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TCTAGTTTCATTTTAG-A.................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGTTTCATTTTAG-TTCTTATCACAA......................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCT-TTGTGCCTAAG----A-ACATCT.....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AAGTA-ATGGCCTTCCAGG......................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................TAAGTACGAAACACT----GA--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTACATCCGAACATCG-ATTACAAA---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATT--CC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTAT-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTGTGCCTAAG----A-ACATCTA-CCTAGTTTCATTTTAG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................CC---AATCGATGAACTTAGATTCTT.................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
droSec2
CTACATCCGAACATCG-ATTACAAA---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CGAA------------------------------------------A-----------AGTTTTCAATGTGTATT--CC---AATACC---AATCGATGAATTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGA---------------------------ACGATCTAA---------C-TCTAAC--TCTAT-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTGTGCCTAAG----A-ACATCTA-CCTAGTTTCATTTTAG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTACATCCGAACATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATT--CC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TCAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTATTCACTATTCACTATTCACTTTTAACTATGAACTATTGACTT--TTCTATC----------ATTTTCG-TTGTGCCTAAG----A-ACATCTG-CCTAGTTTCATTTTAG-TTCTTACTACAATAATTATTA---ACTCACCGACAATTAGCTCCATCTTTTTC-----------------------------------------CG--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATC----------ATTTTCG-TTGTGCCTAAG----.............................................................................................................................2111.00110000000000
........................................................................................................................................................................................................................................................................................................TA-ATGGCCTTCCACCT----TCAGA............................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................GTATT--CC---AATACC---AATCGATG..............................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................AGTACGAAACACT----GT--CTAC----ACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................GTGTATT--CC---AATACC---AATCGATGAACT..........................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
CTACATCCGAACATCG-ATTACAAC---ATGTACAAC--------------------------------------------CAAACGACACAACCTGCAGCACGATGTAAGTACGAAACACT----GT--CTAC----ACTGATTTTGCATTTATC-CAAA------------------------------------------A-----------AGTTTTCAATGTGTATT--TC---AATACC---AATCGATGAACTTAGATTCTTAAAAC-----GCTTAA--AACGCTAAGTA-ATGGCCTTCCACCT----TAAGAAAAGCTTATTAATT-------------ACGATC------------C-TCTAAC--TCTAC-----------------------------------TAACTT--CTCTATC----------ATTTTCT-TTACGCCTAAG----A-ACATCTA-CCTAGTTTCATTTTA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droWil2
CTA------AACATCG-ACAACTAC---ATGTACAACAACAACAACAACA---ACAACAAAAATAAAATATATATATATATCAACCAACACCACCAACAGCACGATGTAAGTACGAAACACA----ATCTCTAC----ACCGAT-TTGCATTTCTC-AAAT------------------------------------------T-----------TTTTTTCAATGTGT-------------ACC---AATCGATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTAC--------ATCG-------AC---ATGTACAAC---------------------------------------------AAATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTTTC-AAAA------------------------------------------T----------------CTTATGTGT-------------TCG---AATCAATGATTTTAGATTT------C-----GCTTTT--ACTGCTAAGCA-----CCTTTCACTT-ACC--TAATAAGCTTATTAGAT------------------C------------T-TATATT----------------------------------------------TTTGATCTTATATATACACATAC----AA------------------------TTTCTACACA--CATTT-T-TT----------------------------AGTAAGTGTTGCATTTTTTTT-----------------------------------------CT--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................ACAGCACGATGTAAGTACGAAACACA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................CAACACCAACAGCACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
CTAC--------ATCG-------AC---ATGTACAAC---------------------------------------------AAATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAAATTGCATTTTTC-CAAA------------------------------------------T-------------CCTACTATGTGT-------------ACAAAAAGTCAAATGATTTAGCTTT------C-----GCTTTT--ACTGCTAAGCA-CTTTTCACTTACTT-ACCTAAACTAAGCTTATTAGAT-------------TTTATA------------C-TTTTCC-----AT-----------------------------------AACATT--CTCTA---------------------------------------------------TTCATTT------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................GTACAAC---------------------------------------------AAATTTCAACACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
C-----------ATCG-------AC---ATGTACAAC---------------------------------------------AAATTTCAACACCAACAGCACGATGTAAGTACGAAACACA----AT--CTAC----ACAGAA-TTGCATTTATC-AAAA----------------------------------------------------------TCCTATGTGT-------------AAA---AATCGATGATTATAGATTT------C-----GCTTTT--ACTGCTAACCA-----CCTCTCCACTTACT--TAATAAGCTTTGTAAAT------------------C---------------------------------------------------------------------------------------TTTT-TG-------------------------------TTTTT-----------------------------------------------------CTTTTGT-----------------------------------------AA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:02 AM