ID:

dan_1024

 Coordinate:

scaffold_12948:325271-325421 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.0 -7.1 -7.0

Flybase annnotation

exon [dana_GLEANR_5080:20]; CDS [Dana\GF21581-cds]; intron [Dana\GF21581-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGGTACGATTTTAACGATAACTATTAACTGATAGCTTAGATTGGAAGTGTAGTGTAGAACGATGACGACGCTATCGAGCTCCTCGAAGAAGCGACGCGTACACCTCCTTCAACCTCTCTAATGCCAGTCTCTTTGTCTGTTCTGTTCTCTCTCTCTTTTATTTTTACTCCTTTGTTCCTTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCAGCGCGTCT
********************************************************************************....((((((.((...((((.....................))))..)).)))))).................................................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V055
head
...............................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTT................... 25 0 1 18.00 18 18 0 0
................................................................................TCCTCGAAGAAGCGACGCGTACACCTCC............................................................................................................................................... 28 0 1 16.00 16 16 0 0
.......................................................TAGAACGATGACGACGCTATCGAGCTCC........................................................................................................................................................................ 28 0 1 13.00 13 13 0 0
...................................................................................TCGAAGAAGCGACGCGTACACCTCCTTC............................................................................................................................................ 28 0 1 11.00 11 11 0 0
....................................................................................................................................................................................................TACAGTCGAACTCAATCAACGTCGGC............................. 26 0 1 10.00 10 10 0 0
....................................................................................................................................................................................................TACAGTCGAACTCAATCAACGTCGGCT............................ 27 0 1 8.00 8 8 0 0
.....................................................TGTAGAACGATGACGACGCTATCGAGC........................................................................................................................................................................... 27 0 1 7.00 7 7 0 0
...................................................................................TCGAAGAAGCGACGCGTACACCTCCTT............................................................................................................................................. 27 0 1 7.00 7 7 0 0
..............................................................................................................................................................................................................CTCAATCAACGTCGGCTTCCTGCGTT................... 26 0 1 7.00 7 7 0 0
............................................................................................................TTCAACCTCTCTAATGCCAGTCTCTTTG................................................................................................................... 28 0 1 5.00 5 5 0 0
......................................................................................................................................................................................................CAGTCGAACTCAATCAACGTCGGCT............................ 25 0 1 5.00 5 5 0 0
.........................................................GAACGATGACGACGCTATCGAGCTCCTC...................................................................................................................................................................... 28 0 1 5.00 5 5 0 0
..................................................................................................................................................................................................TTTACAGTCGAACTCAATCAACGTCGGCT............................ 29 0 1 5.00 5 4 1 0
...............................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTTTG................. 27 0 1 4.00 4 4 0 0
..........................................................AACGATGACGACGCTATCGAGCTCCTC...................................................................................................................................................................... 27 0 1 4.00 4 4 0 0
............................................................................................................................................................TTTTATTTTTACTCCTTTGTTCCTTTGGC.................................................................. 29 0 1 4.00 4 4 0 0
.................................................................................................................................................................TTTTTACTCCTTTGTTCCTTTGGCCAA............................................................... 27 0 1 4.00 4 4 0 0
...............................................................................................................................................................TATTTTTACTCCTTTGTTCCTTTGGC.................................................................. 26 0 1 4.00 4 4 0 0
............................................................................................................................................................................................................AACTCAATCAACGTCGGCTTCCTGCGTT................... 28 0 1 4.00 4 4 0 0
.........................................................................................................TCCTTCAACCTCTCTAATGCCAGTCTCT...................................................................................................................... 28 0 1 4.00 4 4 0 0
...........................................................ACGATGACGACGCTATCGAGCTCC........................................................................................................................................................................ 24 0 1 3.00 3 3 0 0
............................................................................................................................................................................................................AACTCAATCAACGTCGGCTTCCTGCG..................... 26 0 1 3.00 3 3 0 0
..................................................................................CTCGAAGAAGCGACGCGTACACCTCCT.............................................................................................................................................. 27 0 1 3.00 3 3 0 0
................................................................................TCCTCGAAGAAGCGACGCGTACACC.................................................................................................................................................. 25 0 1 3.00 3 3 0 0
...................................................................................................TACACCTCCTTCAACCTCTCTAATGCCAG........................................................................................................................... 29 0 1 3.00 3 3 0 0
.........................................................GAACGATGACGACGCTATCGAGCTCC........................................................................................................................................................................ 26 0 1 3.00 3 3 0 0
.............................................................................................GACGCGTACACCTCCTTCAACCTCTC.................................................................................................................................... 26 0 1 3.00 3 3 0 0
...............................................................................................................AACCTCTCTAATGCCAGTCTCTTTGTC................................................................................................................. 27 0 1 3.00 3 3 0 0
...................................................................................TCGAAGAAGCGACGCGTACACCTCCT.............................................................................................................................................. 26 0 1 3.00 3 3 0 0
........................................................................TATCGAGCTCCTCGAAGAAGCGACGCG........................................................................................................................................................ 27 0 1 3.00 3 3 0 0
........................................................................................................................................................................................................................GTCGGCTTCCTGCGTTTGTTTCGTGCA........ 27 0 1 3.00 3 3 0 0
..................................................TAGTGTAGAACGATGACGACGCTATC............................................................................................................................................................................... 26 0 1 3.00 3 2 1 0
.....................................................................................................CACCTCCTTCAACCTCTCTAATGCCAGTC......................................................................................................................... 29 0 1 3.00 3 3 0 0
.............................................................GATGACGACGCTATCGAGCTCCTCGAA................................................................................................................................................................... 27 0 1 3.00 3 3 0 0
....................................................................................................................................................................................................TACAGTCGGACTCAATCAACGTCGGCT............................ 27 1 1 2.00 2 2 0 0
................................................................................TCCTCGAAGAAGCGACGCGTACACCTC................................................................................................................................................ 27 0 1 2.00 2 2 0 0
...............................................................................................................................................................................................TATTTTACAGTCGAACTCAATCAACG.................................. 26 0 1 2.00 2 2 0 0
................................................................................................................ACCTCTCTAATGCCAGTCTCTTTGTCTGT.............................................................................................................. 29 0 1 2.00 2 2 0 0
...............................................................................................................AACCTCTCTAATGCCAGTCTCTTTG................................................................................................................... 25 0 1 2.00 2 2 0 0
..................................................................................CTCGAAGAAGCGACGCGTACACCTCC............................................................................................................................................... 26 0 1 2.00 2 2 0 0
.................................................................................................................................................................................................TTTTACAGTCGAACTCAATCAACGTC................................ 26 0 1 2.00 2 2 0 0
........................................................................................................CTCCTTCAACCTCTCTAATGCCAGTCTC....................................................................................................................... 28 0 1 2.00 2 2 0 0
...............................................................................CTCCTCGAAGAAGCGACGCGTACACC.................................................................................................................................................. 26 0 1 2.00 2 2 0 0
..................................................................................................................................TCTTTGTCTGTTCTGTTCTCTCTCTC............................................................................................... 26 0 1 2.00 2 2 0 0
....................................................................................................................................TTTGTCTGTTCTGTTCTCTCTCTCTT............................................................................................. 26 0 1 2.00 2 2 0 0
.....................................................................................................................................................................................TGGCCAATAATATTTTACAGTCGAACT........................................... 27 0 1 2.00 2 2 0 0
............................................................................GAGCTCCTCGAAGAAGCGACGCGTAC..................................................................................................................................................... 26 0 1 2.00 2 2 0 0
....................................................................................................................................................................................................TACAGTCGGACTCAATCAACGTCGGC............................. 26 1 1 2.00 2 2 0 0
...............................................................................................................................................................................................TATTTTACAGTCGAACTCAATCAACGTCG............................... 29 0 1 2.00 2 2 0 0
.....................................................................................................................................TTGTCTGTTCTGTTCTCTCTCTCTTT............................................................................................ 26 0 1 2.00 2 2 0 0
........................................................................................GAAGCGACGCGTACACCTCCTTCAACC........................................................................................................................................ 27 0 1 2.00 2 2 0 0
.....................................TAGATTGGAAGTGTAGTGTAGAACGAT........................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0
..................................................................................................................................................................................................................ATCAACGTCGGCTTCCTGCGTTTGTT............... 26 0 1 2.00 2 2 0 0
.................................................................................................................CCTCTCTAATGCCAGTCTCTTTGTCTGT.............................................................................................................. 28 0 1 2.00 2 2 0 0
.....................................................................................................................................................................................................ACAGTCGAACTCAATCAACGTCGGCT............................ 26 0 1 2.00 2 2 0 0
.....................................................................................................................................................................TACTCCTTTGTTCCTTTGGCCAATAATA.......................................................... 28 0 1 2.00 2 2 0 0
..................................................................................................................................................................TTTTACTCCTTTGTTCCTTTGGCCAAT.............................................................. 27 0 1 2.00 2 2 0 0
.............................................................................................................TCAACCTCTCTAATGCCAGTCTCTTTGTC................................................................................................................. 29 0 1 2.00 2 2 0 0
.................................................................................................................................................................................................................AATCAACGTCGGCTTCCTGCGTT................... 23 0 1 2.00 2 2 0 0
........................................................................................................................................................................TCCTTTGTTCCTTTGGCCAATAATA.......................................................... 25 0 1 2.00 2 2 0 0
................................................................................................................................TCTCTTTGTCTGTTCTGTTCTCTCTCTC............................................................................................... 28 0 1 2.00 2 2 0 0
.............................................................................................................................................................TTTATTTTTACTCCTTTGTTCCTTTGGC.................................................................. 28 0 1 2.00 2 2 0 0
....................................................................................................................................TTTGTCTGTTCTGTTCTCTCTCTCTTT............................................................................................ 27 0 1 2.00 2 2 0 0
...........................................................................................GCGACGCGTACACCTCCTTCAACCTCTC.................................................................................................................................... 28 0 1 2.00 2 2 0 0
......................................................................................................ACCTCCTTCAACCTCTCTAATGCCAGTC......................................................................................................................... 28 0 1 2.00 2 2 0 0
............................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATCAAC................................... 28 0 1 2.00 2 2 0 0
.....................................................................................................................................................................TACTCCTTTGTTCCTTTGGCCAATAATAT......................................................... 29 0 1 2.00 2 2 0 0
...................................................................................................TACACCTCCTTCAACCTCTCTAATGCCA............................................................................................................................ 28 0 1 2.00 2 2 0 0
..........................................................................TCGAGCTCCTCGAAGAAGCGACGCG........................................................................................................................................................ 25 0 1 2.00 2 2 0 0
.................................................................................................................................................................................................TTTTACAGTCGAACTCAATCAACGTCGGC............................. 29 0 1 2.00 2 2 0 0
............................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATC...................................... 25 0 1 2.00 2 2 0 0
....................................................................................CGAAGAAGCGACGCGTACACCTCCT.............................................................................................................................................. 25 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................................AATCAACGTCGGCTTCCTGCGTTTGTTT.............. 28 0 1 1.00 1 1 0 0
.............................................................................AGCTCCTCGAAGAAGCGACGCGTACACA.................................................................................................................................................. 28 1 1 1.00 1 1 0 0
....................................................................................................................................................................................................TACAGTCGTACTCAATCAACGTCGGC............................. 26 1 1 1.00 1 1 0 0
................................................................GACGACGCTATCGAGCTCCTCGAAG.................................................................................................................................................................. 25 0 1 1.00 1 1 0 0
...............................................................TGACGACGCTATCGAGCTCCTCGAAGAA................................................................................................................................................................ 28 0 1 1.00 1 1 0 0
.....................................................................................................CACCTCCTTCAACCTCTCTAATGCCAGT.......................................................................................................................... 28 0 1 1.00 1 1 0 0
...................................................................................TCGAAGAAGCGACGCGTACACCTCC............................................................................................................................................... 25 0 1 1.00 1 1 0 0
....TACGATTTTAACGATAACTATTAACT............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................GAACTCAATCAACGTCGGCTTCCTGCGTG................... 29 1 1 1.00 1 1 0 0
...................................................................................................................................................CTCTCTCTCTTTTATTTTTACTCCTT.............................................................................. 26 0 1 1.00 1 1 0 0
..............................................................ATGACGACGCTATCGAGCTCCTCGAAG.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................................CGGCTTCCTGCGTTTGTTTCGTGCA........ 25 0 1 1.00 1 1 0 0
......................TATTAACTCATAGCTTAGATTGGAAGTG......................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0
...................................................................................................................................................................................................TTACAGTCGAACTCAATCAACGTCGGCT............................ 28 0 1 1.00 1 1 0 0
.............................................................GATGACGACGCTATCGAGCTCCTCGA.................................................................................................................................................................... 26 0 1 1.00 1 1 0 0
.................................................................................................................................................................TTTTTACTCCTTTGTTCCTTTGGCC................................................................. 25 0 1 1.00 1 1 0 0
.........................................................GAACGATGTCGACGCTATCGAGCTCC........................................................................................................................................................................ 26 1 1 1.00 1 1 0 0
..............................................................................GCTCCTCGAAGAAGCGACGCGTACACC.................................................................................................................................................. 27 0 1 1.00 1 1 0 0
................................................TGTAGTGTAGAACGATGACGACGCTATC............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0
...............................................................................................................................GTCTCTTTGTCTGTTCTGTTCTCTCTC................................................................................................. 27 0 1 1.00 1 1 0 0
...............................................................................................................................................................TATTTTTACTCCTTTGTTCCTGTGGC.................................................................. 26 1 1 1.00 1 1 0 0
..........................................................................TCGAGCTCCTCGAAGAAGCGACGCGTAC..................................................................................................................................................... 28 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTTTG................. 26 0 1 1.00 1 1 0 0
.....................................................................................................CACCTCCTTCAACCTCTCTAATGCC............................................................................................................................. 25 0 1 1.00 1 1 0 0
...................................................................................TCGAAGAAACGACGCGTACACCTCCTTC............................................................................................................................................ 28 1 1 1.00 1 1 0 0
........................................................................................................................................TCTGTTCTGTTCTCTCTCTCTTTTATT........................................................................................ 27 0 1 1.00 1 1 0 0
..................................................................................................................CTCTCTAAGGCCAGTCTCTTTG................................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................TCTCTAATGCCAGTCTCTTTGTCTGTTC............................................................................................................ 28 0 1 1.00 1 1 0 0
.....................................................................................................................TCTAATGCCAGTCTCTTTGTCTGTTCTG.......................................................................................................... 28 0 1 1.00 1 1 0 0
..................................................................................................................................TCTTTGTCTGTTCTGTTCTCTATCTC............................................................................................... 26 1 1 1.00 1 1 0 0
...............................................................................................................................................TGTTCTCTCTCTCTTTTATTTTTAC................................................................................... 25 0 1 1.00 1 1 0 0
............TAACGATAACTATTAACTGATAGCT...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................AATATTTTACAGTCGAACTCAATCAAC................................... 27 0 1 1.00 1 1 0 0
...................................................................................................................TCTCTAATACCAGTCTCTTTGTCTGT.............................................................................................................. 26 1 1 1.00 1 1 0 0
....................................................................................................................................................................TTACTCCTTTGTTCCTTTGGCCAATAA............................................................ 27 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................GAATCAACGTCGGCTTCCTGCGTT................... 24 1 1 1.00 1 1 0 0
..................................................................................CTCGAAGAAGCGACGCGTACACCTCCTTC............................................................................................................................................ 29 0 1 1.00 1 1 0 0
............................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATCAA.................................... 27 0 1 1.00 1 1 0 0
...................................................................................TCGAAGAAGCGACGCGTACACTTCCTTC............................................................................................................................................ 28 1 1 1.00 1 1 0 0
................................................................................TCCTCGAAGAAGCGACGCGTACACCT................................................................................................................................................. 26 0 1 1.00 1 1 0 0
..............................................................................................................................................................TTATTTTTACTCCTTTGTTCCTTTGGC.................................................................. 27 0 1 1.00 1 1 0 0
.............AACGATAACTATTAACTGATAGCTTA.................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0
........................................................................................................................................TCTGTTCTGTTCTCTCTCTCTTTTA.......................................................................................... 25 0 1 1.00 1 1 0 0
......................................AGATTGGAAGTGTAGTGTAGAACGAT........................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0
..................................................................................................................................................TCTCTCTCTCTTTTATTTTTACTCCT............................................................................... 26 0 1 1.00 1 1 0 0
.......................................................................................................................................................................CTCCTTTGTTCCTTTGGCCAATAATA.......................................................... 26 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTTTGTT............... 28 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................................GGCTTCCTGCGTTTGTTTCGTGCAGC...... 26 0 1 1.00 1 1 0 0
..........................................TGGAAGTGTAGTGTAGAACGATGACGA...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
...............................................................................................................AACCTCTCTAATGCCAGTCTCTTTGT.................................................................................................................. 26 0 1 1.00 1 1 0 0
.......................................................TAGAACGAAGACGACGCTATCGAGCTCC........................................................................................................................................................................ 28 1 1 1.00 1 1 0 0
...................................................................................................................GCTCTAATGCCAGTCTCTTTGTCTGT.............................................................................................................. 26 1 1 1.00 1 1 0 0
...................................................................................................TACACCTCTTTCAACCTCTCTAATGCCAG........................................................................................................................... 29 1 1 1.00 1 1 0 0
...............................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTTTGTT............... 29 0 1 1.00 1 1 0 0
.........................................................................................................TCCTTCAACCTCTCTAATGCCAGCCTC....................................................................................................................... 27 1 1 1.00 1 1 0 0
.............................................................................................GACGCGTACACCTCCTTCAACCTCT..................................................................................................................................... 25 0 1 1.00 1 1 0 0
.....................................................................................................................................TTGTCTGTTCTGTTCTCCCTCTCTTTTA.......................................................................................... 28 1 1 1.00 1 1 0 0
.................................................................................CCTCGAAGGAGCGACGCGTACACCTCC............................................................................................................................................... 27 1 1 1.00 1 1 0 0
.............................................................................................................................................................................................................ACTCAATCAACGTCGGCTTCCTGCGTT................... 27 0 1 1.00 1 1 0 0
............................................................................GAGCTCCTCGAAGAAGCGACGCGTACACC.................................................................................................................................................. 29 0 1 1.00 1 1 0 0
...............................................................................................................................GTCTCTTTGTCTTTTCTGTTCTCTCTCTC............................................................................................... 29 1 1 1.00 1 1 0 0
...............................................................................................................AACCTCTCTAATGCCAGTCTCTTTGTCTG............................................................................................................... 29 0 1 1.00 1 1 0 0
..................................................................................................................................................................................................TTTACAGTCGAACTCAATCAACGTCGGC............................. 28 0 1 1.00 1 1 0 0
.................................................................................................................................CTCTTTGTATGTTCTGTTCTCTCTC................................................................................................. 25 1 1 1.00 1 1 0 0
..................................................................................................................................................................................................GTTACAGTCGAACTCAATCAACGTCGGC............................. 28 1 1 1.00 1 1 0 0
..................................................................................CTCGAAGAAGCGACGCGTACACCTC................................................................................................................................................ 25 0 1 1.00 1 1 0 0
...........................................................................................................................................................................TTTGTTCCTTTGGCCAATAATATTTTACA................................................... 29 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................CAACGTCGGCTTCCTGCGTT................... 20 0 1 1.00 1 1 0 0
................................................................................TCCTCGAAAAAGCGACGCGTACACCTCC............................................................................................................................................... 28 1 1 1.00 1 1 0 0
................................................................................................................................................GTTCTCTCGCTCTTTTATTTTTACTCC................................................................................ 27 1 1 1.00 1 1 0 0
.....................................................................................................................TCTAATGCCAGTCTCTTTGTCTGTTCTGT......................................................................................................... 29 0 1 1.00 1 1 0 0
.......................................GATTGGAAGTGTAGTGTAGAACGATGAC........................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0
............................................................................................................TTCAACCTGTCTAATGCCAGTCTCTT..................................................................................................................... 26 1 1 1.00 1 1 0 0
..................................................................................................................CTCTCTAATGCCAGTCTCTTTGTCTGTTC............................................................................................................ 29 0 1 1.00 1 1 0 0
.....................................................................................................................................................................TACTCCTTTGTTCCTTTGGCCAATAATAA......................................................... 29 1 1 1.00 1 1 0 0
..........................................................................................AGCGACGCGTACACCTCCTTCAACCTC...................................................................................................................................... 27 0 1 1.00 1 1 0 0
.................................................................................CCTCGAAGAAGCGACGCGTACACC.................................................................................................................................................. 24 0 1 1.00 1 1 0 0
..................................................................................................................................................................TTTTACTCATTTGTTCCTTTGGCCAAT.............................................................. 27 1 1 1.00 1 1 0 0
.......................................................TAGAACGAGGACGACGCTATCGAGCTCC........................................................................................................................................................................ 28 1 1 1.00 1 1 0 0
.........................................................................................................TCCTTCAACCTCTCTAATGCCAGTCTCTT..................................................................................................................... 29 0 1 1.00 1 1 0 0
.........................................................................................AAGCGACGCGTACACCTCCTTCAACC........................................................................................................................................ 26 0 1 1.00 1 1 0 0
............................................................................................................TTCAACCTCTCTAATGCCAGTCTCTTT.................................................................................................................... 27 0 1 1.00 1 1 0 0
..........................................................................TCGAGCTCCTCGAAGAAGCGACGCGTA...................................................................................................................................................... 27 0 1 1.00 1 1 0 0
........................................................................................................................................................................TCCTTTGTTCCTTTGGCCAATAATATTT....................................................... 28 0 1 1.00 1 1 0 0
............................................................................................................................................................................................................GACTCAATCAACGTCGGCTTCCTGCGT.................... 27 1 1 1.00 1 1 0 0
................................................................GACGACGCTATCGAGCTCCTCGAAGAAG............................................................................................................................................................... 28 0 1 1.00 1 1 0 0
.....................................TAGATTGGAAGTGTAGTGTAGAAC.............................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................GTCAATCACCGTCGGCTTCCTGCGTT................... 26 2 1 1.00 1 1 0 0
........................................................................................................CTCCTTCAGCCTCTCTAATGCCAGTC......................................................................................................................... 26 1 1 1.00 1 1 0 0
........................................................................TATCGAGCTCCTCGAAGAAGCGACGC......................................................................................................................................................... 26 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................TTTTACAGTCGAACTCAATCAACGTCGG.............................. 28 0 1 1.00 1 1 0 0
..................................................................................................................CTCTCTAATGCCAGTCTCTTTGTCTG............................................................................................................... 26 0 1 1.00 1 1 0 0
......................TATTAACTGATAGCTTAGATTGGAAG........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0
..................................................................................................................................................................TTTTACTCCTTTGTTCCT....................................................................... 18 0 1 1.00 1 1 0 0
....................................................................................CGAAGAAGCGACGCGTACACCTCCTTC............................................................................................................................................ 27 0 1 1.00 1 1 0 0
.........................................................................ATCGAGCTCCTCGAAGAAGCGACGCG........................................................................................................................................................ 26 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTT................... 24 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................TATTTTACAGTCGAACTCAATCAACGTC................................ 28 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................TCGGCTTCCTGCGTTTGTTTCGTGCAGC...... 28 0 1 1.00 1 1 0 0
................................................................................................................................TCTCTTTGTCTGTTCTGTTCTCTCTCT................................................................................................ 27 0 1 1.00 1 1 0 0
...................................................................................................TACACCTCCTTCAACCTCTCTAATGC.............................................................................................................................. 26 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................................TTTGTTTCGTGCAGCGCGTCT 21 0 1 1.00 1 1 0 0
..............................................................................................................CAACCTCTCTAATGCCAGTCTCTTTGTC................................................................................................................. 28 0 1 1.00 1 1 0 0
......................................................................................................GCCTCCTTCAACCTCTCTAATGCCAGTC......................................................................................................................... 28 1 1 1.00 1 1 0 0
...................................................................................................................................................................................................GTACAGTCTAACTCAATCAACGTCGGC............................. 27 2 1 1.00 1 1 0 0
..........................................................................................................CCTTCAACCTCTCTAATGCCAGTCTCT...................................................................................................................... 27 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................GAACTCAATCAACGTCGGCTTCCTGCG..................... 27 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGTGTT................... 25 1 1 1.00 1 1 0 0
............................................................................................................................................................................................TAATATTTTACAGTCGAACTCAAT....................................... 24 0 1 1.00 1 1 0 0
..........................................................AACGATGAGGACGCTATCGAGCTCCTC...................................................................................................................................................................... 27 1 1 1.00 1 1 0 0
................................................................................TCCTCGAAGAAGCGACGCGTAGACC.................................................................................................................................................. 25 1 1 1.00 1 1 0 0
...................................................................................TCGAAGAAGCGACGCGTACACCTCCTTCA........................................................................................................................................... 29 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................CTCAATCAACGTCGGCTTCCTGCGTTTG................. 28 0 1 1.00 1 1 0 0
...................................................................................................................................................................TTTACTCCTTTGTTCCTTTGGCCAATAA............................................................ 28 0 1 1.00 1 1 0 0
..................................................................................................................................................................TTTTACTCCTTTGTTCCTTTGGCCAA............................................................... 26 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................TCGAACTCAATCAACGTCGGCTTCCTGC...................... 28 0 1 1.00 1 1 0 0
.................................................................................................................................................................TTTTTACTCCTTTGTTCCTTTGGCCAAT.............................................................. 28 0 1 1.00 1 1 0 0
..................................................................................................................................................................TTTTACTCATTTGTTCCTTTGGC.................................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................................................................................TTTATTTTTACTCCTTTGTTCCTTTGGCT................................................................. 29 1 1 1.00 1 1 0 0
.................................................................................CCTCGAAGAAGCGACGCGTACACCTCC............................................................................................................................................... 27 0 1 1.00 1 1 0 0
..........................................................AACGATGACAACGCTATCGAGCTCCTC...................................................................................................................................................................... 27 1 1 1.00 1 1 0 0
........................................................................................................................................................................................................................GTCGGCTTCCTGCGTTTGTTTCGTG.......... 25 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................TACTGTCGAACTCAATCAACGTCGGCT............................ 27 1 1 1.00 1 1 0 0
........................................................................................................................................................................TCCTTTGTTCCTTTGGCCAATAATAT......................................................... 26 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................TTCCTGCGTTTGTTTCGTGCAGCGCGTCT 29 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................CAATAATATTTTACAGTCGAACTCAAT....................................... 27 0 1 1.00 1 1 0 0
................................................................................................................ACCTCTCTAATGCCAGTCTCTTTGTC................................................................................................................. 26 0 1 1.00 1 1 0 0
...............................................................................................................................................................TATTTTTACTCCTTTGTTCCTTTGGCCAA............................................................... 29 0 1 1.00 1 1 0 0
................................................................................TCCTCGAAGAAGCGACGCGTA...................................................................................................................................................... 21 0 1 1.00 1 1 0 0
.....................................TAGATTGGAAGTGTAGTGTAGAACGA............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0
.......................................................................................................CCTCCTTCAACCTCTCTAATGCCAGTC......................................................................................................................... 27 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................................TCCTGCGTTTGTTTCGTGCAGCGCG... 25 0 1 1.00 1 1 0 0
..........................................................................TCGAGCTCATCGAAGAAGCGACGCGTA...................................................................................................................................................... 27 1 1 1.00 1 1 0 0
..........................................................AACGATGACGACGCTATCGAGCTCC........................................................................................................................................................................ 25 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................TCGGCTTCCTGCGTTTGTTTCGTGCA........ 26 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGC...................... 22 0 1 1.00 1 1 0 0
.....................................................................................................CGCCTCCTTCAACCTCTCTAATGCCAGTC......................................................................................................................... 29 1 1 1.00 1 1 0 0
..................................................................................................................................................TCTCTCTCTCTTTTATTTTTACTCC................................................................................ 25 0 1 1.00 1 1 0 0
......................TATTAACTGATAGCTTAGATTGGAAGTG......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0
.........................TAACTGATAGCTTAGATTGGAAGTG......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
.....................................................................................GAAGAAGCGACGCGTACACCTCCTTC............................................................................................................................................ 26 0 1 1.00 1 1 0 0
.............................................................................................................TCAACCTCTCTAATGCCAGTCTCTTTG................................................................................................................... 27 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................GTCGAACTCAATCAACGTCGGCTTCC......................... 26 0 1 1.00 1 1 0 0
................................................................................TCCTCGAAGAAGCGACGCGTAC..................................................................................................................................................... 22 0 1 1.00 1 1 0 0
............................................TAAGTGTAGTGTAGAACGATG.......................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0
.................................................................................ACTCAAAGATGCGACGCGTAC..................................................................................................................................................... 21 3 3 0.33 1 0 0 1
............................................................................................................................CCAGTCTCTTTGTCTCTCCTAT......................................................................................................... 22 3 6 0.17 1 0 0 1
...........................................GGATATGTAGTGTAGAAAGA............................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0
.............................TGATAGCTGACTTTGGAAGT.......................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0
......................................................................................................................................TGCCAGTTCTGTTATCTCTC................................................................................................. 20 3 13 0.08 1 0 0 1

Anti-sense strand reads

TGCCATGCTAAAATTGCTATTGATAATTGACTATCGAATCTAACCTTCACATCACATCTTGCTACTGCTGCGATAGCTCGAGGAGCTTCTTCGCTGCGCATGTGGAGGAAGTTGGAGAGATTACGGTCAGAGAAACAGACAAGACAAGAGAGAGAGAAAATAAAAATGAGGAAACAAGGAAACCGGTTATTATAAAATGTCAGCTTGAGTTAGTTGCAGCCGAAGGACGCAAACAAAGCACGTCGCGCAGA
******************************************************************....((((((.((...((((.....................))))..)).)))))).................................................******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 V105
male body		 M044
female body
 V106
head
..............................................................................................................................................................................CAAGGAAATCGGTAATTATA......................................................... 20 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................AGAACCAGACAAAACAAGAGA.................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...............GCTCTTGAAAATTTACTATCGAA..................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................AAACAAAACAAGAGAGAGCGAAAAT.......................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0
.......................................CTAACCTTTGCATCACATC................................................................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................................................ACCCAGACAAGACAAGAGAGA.................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GGTTGAGTTAGTTGCAGC............................... 18 1 3 0.33 1 0 0 0 1 0 0
................................................................CTGCAGCGATAGGTCGAG......................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................CATGTAGAGCAAGTTGGA....................................................................................................................................... 18 2 6 0.33 2 2 0 0 0 0 0
................................................................................................................................AAAGAAACAGACAAGAAGAGAGA.................................................................................................... 23 3 4 0.25 1 0 1 0 0 0 0
.......................................................................................................................................CAGACAAGACAAGAAAGAAA................................................................................................ 20 2 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................AGAAACAGACAAGAAAAG....................................................................................................... 18 1 5 0.20 1 1 0 0 0 0 0
..........................................AGCTTCACATTACATCTTGA............................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0
.................................................................................................................................................AAGAGAGAGAGACAATAA........................................................................................ 18 1 6 0.17 1 0 0 0 0 0 1
..................................................................................................................................................AGAGAGACAGAAAATAAGAAGGA.................................................................................. 23 3 7 0.14 1 0 0 0 0 1 0
....................................................................................................................................AAAAAGACACGACAAAAGAGAGA................................................................................................ 23 3 7 0.14 1 1 0 0 0 0 0
......................................................................................................................................ACAGAGAAGACAAAAGAGA.................................................................................................. 19 2 8 0.13 1 1 0 0 0 0 0
..........................................................................................................................................................AGAAAATAAAAACGAGGGAA............................................................................. 20 2 8 0.13 1 0 0 0 0 1 0
.......................................................................................................................................CAGACAAGAAAAGAAAGAGA................................................................................................ 20 2 8 0.13 1 1 0 0 0 0 0
................................................................................................................................AGAAACACAGGCAAGACAAGA...................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0
................................................................................................ATCATGTGGAGCAAGTTGGA....................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0
.......................................CTAGCCTTCGCAGCACATC................................................................................................................................................................................................. 19 3 12 0.08 1 0 1 0 0 0 0
.................................................................................................................................GGCAAACAGACAAGACAAGAA..................................................................................................... 21 3 14 0.07 1 0 1 0 0 0 0
..................................................................................................................................AGAAACGGACAAGAAAAGA...................................................................................................... 19 2 15 0.07 1 0 0 0 0 1 0
................................................................................................................................................CAAGAGAAAGAGATAATAA........................................................................................ 19 2 16 0.06 1 1 0 0 0 0 0
.............................................................................................................................................ACACCAGAGAGAGAGAAAAAAAAA...................................................................................... 24 3 18 0.06 1 1 0 0 0 0 0
..........................................................................................................................................................AGAAAAGAAAAATGAGGGA.............................................................................. 19 2 20 0.05 1 0 0 0 1 0 0
..........................................AGCTTCAAATTACATCTTG.............................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0
.....................................................................................................GCGGAGGAAGTCGGAGAG.................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................AGGAGAGAGAGAAAATCAATA..................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................................AGAAGAGAGAGATAAAATA......................................................................................... 19 2 20 0.05 1 0 0 0 1 0 0
............................................................................................................................GGTGGGAGACACAGACAAG............................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................AGAAAGAGACAAGACAAAA...................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
..........................................AGCTTCAAATGACATCTTG.............................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12948:325221-325471 - dan_1024 AC------------------GGTACGATTT--TAAC--------------------------------GATAACTATTAACTGA------------TAGCTTAGATTGGAA-------------------G-TGTAGTGTAGA-ACGATGACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGTCT-CTTTGTCTGTTCTGTTCTCTCTCTCTTT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCAGCGCGTCT
droBip1 scf7180000395801:66590-66842 - AC------------------GGAACGATTT--TAAC--------------------------------GATAACTATTAACCGT------------TAGCATAGATTGGAA-------------------G-TGTAGTGTAGA-TCGATGACGACGATATCGAGCTCC-TCGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGCG-ACGCATACACC---------------------------------------------------------------A-CCT--T-CAACCAT--TCTAATTCCAGTCT-CTTTATCTGTTCTGTTCTCTCTCTCTCT--TT---------TATTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTACGTTTGTTTCGTGCGGCGCGTCT
droKik1 scf7180000302441:127499-127694 + AC------------------GGAACGTGCTA-------------------------------------------TACTAACCGA------------TAGTTTAGATTGGAATGCATC-------------G-AATC-CGTAGA-TCGATGGCGAAGCCGTA----------------------------------------------------------------------------------ACCG-AAGCC-----------------------------------------------------------------------------------------GAG---------------------------CTCCATCGGA-TACCCCGTATCT-TA-A------GA-----------------------CGGGGGACCAATGAAATCAC--TCTAATTCC-GTAT-CCTTATCTGTTCTGTTTTCTCTCTCTCT--T-------------T---------------TTG--TTTCTTTTGA------------------------------------------------------------------------------CTC--TAT--TCC-----------------------------------------------------------------------------------------
droFic1 scf7180000454073:131567-131958 + AC------------------GGAACGAGCTA------------------------------------------CTACTAATCGA------------TAGTTTAGATTGAAATGCATC--GAACCCACATCG-AATCACGTAGAATCGATGGCGACGCCTTTTAGTTCC-ATGGGCTTCTC------------------------------------------------------------CCTTCC-------CCACAAAAAAAATAAAAAATAAAAAAAAGA-----------------------------------------------------------AAG---------------------------CC-CATCGAA-T---TCGTACTT-TA-A------GA-----------------------CGGGA-TCG--T-AAACCAG--TCTAATGGCAATTT-CCTTATCTGTTCTGTTT-CTCTCTCTCT--TT---------CTTT---------------TTG--CTTCC-TCCCCT-------CTCTCCCTTTCTCCCTCTCT-CCCCACACACACACTCTCTCTCTCTCTCACTCCCTCACTCTTGATCGACCA--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGCCT
droEle1 scf7180000491242:261938-262215 + AC--TACTA--ACTACTAACGGAACGAGCTA---------------------------------------------CTTATCGA------------TAGTTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGTTCT-TTGA-----------------------------------------------------------------------------GCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATCGAA-T---TCGTA-TGTT-AA------GA-----------------------CGGGA-ACG--T-TAACCAG--TCTAATGCCAAATT-CCTTATCTGTTCTGTTTTCTCTCTCTCT--C-------------T---------------TTG--TTTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGCCT
droRho1 scf7180000763611:115028-115295 + AC------------------GGAACGAGCTACT-----------------------------------------TACTAATCGA------------TAGTTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGGGACGCCTTCTAGTTCC-TTGA-----------------------------------------------------------------------------GCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATGGAA-T---TCGTA-TGTT-AA------GA-----------------------CGGGA-ACG--T-TAACCAG--TCTAATGCCAATTT-CCTTATCTGTTCTGTTTTCTCTCTCTCT--T-------------T---------------TTG--TTTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCGGCGCGCCT
droBia1 scf7180000302126:618731-619033 - AC------------------GGAACGAGCTA------------------------------------------CTACTAATCGA------------TAGTTTAGATTGAAATGCATC-------------G-AGTCACGTAGA-TCGATGGCGACGCCTTCTAGTTCCCCCGAGCTCCCC---------------------GA--------------------GT-TCCCGGGTTCCC-GGGTTC----------------------------------------------------------------------------------------------------------------------------------CATCGAA-T---CCGTACTA-TA-A------GA-----------------------CGGGA-TCG--T-TAACCAG--TCTAATGCCAATTT-CCTTATCCATTCTGTTTTCTCTCTCTCC--CC---------TTTT---------------TTG--TTTCT-TCGACTCT-----C--------------------------------------TCT---------------------------TCCTTTGG--TGT-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGCCT
droTak1 scf7180000414222:60699-61003 + AC------------------GGAACGAGCTA---------------------------------------------CTAATCGATACTAATTCAAATAGTTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGA-TCATAGTTCC-CTGAGATCCCC---------------------GA--------------------GCTCCCAGGGTTCC--------------------------------------------------------------------------------------------------------------------------------------------TTGAA-T---CCGTA-TGTT-AA------GA-----------------------CGGAA-ACG--T-TAACCAG--TCTAATGCCAATTT-CCTTATACATTCTGTTTTCTCTCTCTCC--TC---------TTTT---------------TTG--TTTCT-TCGACTCCATTCTC--------------------------------------TCT---------------------------TCCTTT----GGT-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGTCT
droEug1 scf7180000409008:1240557-1240923 - CT------------------ACTACTACTA--CTAC--------------------------------TACTACTACTAATCGA------------TAGTTTAGATTAAAACCCATC-------------G-AATCACGTAGA-TCGATGACGACGCCTTCTAGTTCC-TTGAGTTCCTT---------------------ACATTCCCTTGA----------GTCTC------TCCCTCGA----------------------------------------------------------------------------------------------------GAG---------------------------CT-CATCGAA-A---TTGTATTG-CA-A----AAAAAGAAGAAGAAAAAAAAACAAAATTGGGA-ACT--T-GAACCTT--TCTAATGCCAATAT-CCTTATCCATTCTGTTTTCTCTTTCTCT--TT-----------TTTTGATTTGTTTAC--TCC--T-----TCCGACA------------------------CACACACACACACACACTCTCTCT---------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGACT
dm3 chrX:11848265-11848594 - CC-----------------------------------------------------------TACTGCTTACTACTACCAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T---TCGCACCG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAA--TCTAATGCCATTTT-CCTTATCCGTTCTGTTTTCTCTCTCTCTCTCGTTTTT------TTTTTATTTGTTTGT--TTATTTCTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACT
droSim2 x:11224026-11224380 - dsi_27344 AC------------------GGAACGAGCTACTAACTACCTACTAACTACT-------ACCTACTGCTTACTACTACCAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T---TCGCACTG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAG--TCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCTCTCG--TT-----------TTTTTATTTGTTTGT--TTA--TCTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACT
droSec2 scaffold_53:65193-65549 - AC------------------GGAACGAGCTACTAACTGCCTACTGACTACT-------ACCTACTGCTTACTACTAATAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTTTCCCGAGTTCCTTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T---TCGCACTG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAG--TCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCTCTCT--CG-------TT--TTTTTATTTGTTTGT--TTA--TCTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACT
droYak3 X:14851559-14851926 + AT------------------------------------------------------------ACTGC-TACTACTATCATTCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGACGACGCCTTCTAGATCC-TTGAGTTCCCCCAAGTTTCCCCGAGATTCCCCAAGTTTCCCTGAGTTTTCCCGAGTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T-CTTCGCACTG-TAAT------GA-----------------------TGGGAAACT--TGCAAGCAGTCTCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCTCTCT--CG-------TT--T-TTTATTTGTTTGT--TTG--TCTCT-TCGA------------------------------------------------------------------------------CTC--TCTTCTTC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACT
droEre2 scaffold_4690:3329348-3329711 + AC------------------GGAACGAGCTACTAACTACCTACTACCTACTACATAGTACCTACTGCTTACTACTACCAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCCC---------------------GA--------------------GTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------AAG---------------------------CT-CAACGGAAT---TCGCACTG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAG--TCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCCCTCT--CG-------TT--T-TTTATTTGTTTGT--TTG--TCTCT-TCGA------------------------------------------------------------------------------CTG--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGAGCGGCGCGACT
dp5 4_group4:5132301-5132350 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATTTGATTTCCATCAACTTCTTCCGCCTGTTTCGTGTGATGCGCCT
droPer2 scaffold_22:224261-224579 - AC------------------GGAACGATCTA---------------------------------------CTACTACTAACCGA------------TAGTTTAGATTGGAATGCATCATGAG--AGCATCATCATCAAGTA----TGATGACG-CGCTTTCGAGTTCG-AAGAGTTCCCC----------------------------------------------------------TC------------------------------------AAAAAGG-----------------------------------------------------------GAT---------------------------TC-GGACGAA-T---TCACGTTA-TATTACGAAAAA-----------------------CGGGG-AC-----AAACCAC--TCTAATACCAATCT-CCTTTTCCGTTCTGTTTTCTCTCT-TCT--TT---------TATT---------------TTG--TTTCT-TCGAATCT---------------------------------------------------------------------------GC--TCT--TCCAAAACAACAACAAACCTTTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCT
droWil2 scf2_1100000004909:10260538-10260676 - TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-ATTTATCTTTTCTT--CTCCTG--------CGATTATGGTT--T-TTCTTTTGGTTTT--TTG--GTTTT-TG--------------------------------------------------------------------------------GTG--TCT--TCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCT
droVir3 scaffold_12970:8673764-8674041 - CTACTACTACTACTACTA----T-----------------------------------AACTGCTACTTAGAACTAA----CGAACTTAATTAAAAAAGCAAAAAGCAAAAAGCAGA-------------G-AAACA--------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGAGATCATATTCGAACTGAGCTGAAAGGCGTCA-ATTTCGAATACATCTGAATTCATTGGTA--AAA-ACG-ATACA--------------------------------------------------------------------------CCATCAC--TCTAAT-CTACTCT-CCTTATT--TTCTGTTTT-TCTCT---------------------------------------------------------------------------------------------------------------------------------TTT--TCT--CCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATCAACGTTGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCT
droMoj3 scaffold_6473:12682536-12682850 - CTACTACTATTCTTACTG-------------------------------TT-------AGCTGCTACTAA-------GAACTAA------------CGAACCAATTTGAAAAAAACA-------------A-AAAAACAA---------------------------------------------------------------------------------------------------------------------------------------AAAGATGAAACTAAACCTGAGACTATATTCGAAGGGTTCCCCTAGGCAACTCGCCTCGAATATATCTGAACTCATCGGTTTCACA-ACG-ATACA--------------------------------------------------------------------------CCATCTC--TCTAAT-CTGCTCT-CCTTATT--TTCTGTTTTTCTT--------CG-------TT--T-TTTTTCTCTCTCTCTTTC--TCTCT-CTCT------------------------------------------------------------------------------CTC--TCG--CCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATCAACGTTGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCT
droGri2 scaffold_15203:11419559-11419840 - TA-CCACTAC------TA----TAACTGCTA--------------------------------CTACTAAGTACTAA----CGA--------------ACTTAA--TGAAAAAAAAA-------------A-AAAGAAGA---------------------------------------------------------------------------------------------------------------------------------------AAAGCAGAGAAACAAACTGAGATAATATTCGAACTGAGCTGAAAAGCATCA-ATTTTGAATACATCTGAATTGGTCTGTAAGGAACACG-GGACA--------------------------------------------------------------------------ACATCAC--TCTAATACTATTTCTCCTTATT--TCCTGTTTC-TC-----------------------------------------G--TTTCT-CT--------------------------------------------------------------------------------CTT--TTC--TCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATC-ACGTCGGCTTCTTGCGTT-G-TTCGTGCGGCCCGTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AC------------------GGTACGATTT--TAAC--------------------------------GATAACTATTAACTGA------------TAGCTTAGATTGGAA-------------------G-TGTAGTGTAGA-ACGATGACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGTCT-CTTTGTCTGTTCTGTTCTCTCTCTCTTT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCAGCGCGTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTT...................25118.00181800000
.....................................................................................................................................................................TCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CC............................................................................................................................................................................................................................................................................................28116.00161600000
...........................................................................................................................................TAGA-ACGATGACGACGCTATCGAGCTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28113.00131300000
.........................................................................................................................................................................TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-C......................................................................................................................................................................................................................................................................................28111.00111100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTCGAACTCAATCAACGTCGGC.............................26110.00101000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTCGAACTCAATCAACGTCGGCT............................2718.008800000
.........................................................................................................................................TGTAGA-ACGATGACGACGCTATCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.007700000
.........................................................................................................................................................................TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-.......................................................................................................................................................................................................................................................................................2717.007700000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATCAACGTCGGCTTCCTGCGTT...................2617.007700000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T--T-CAACCTC--TCTAATGCCAGTCT-CTTTG..........................................................................................................................................................................................................................................................2815.005500000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGAACTCAATCAACGTCGGCT............................2515.005500000
.............................................................................................................................................GA-ACGATGACGACGCTATCGAGCTCC-TC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2815.005500000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGTCGAACTCAATCAACGTCGGCT............................2915.005400010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTTTG.................2714.004400000
..............................................................................................................................................A-ACGATGACGACGCTATCGAGCTCC-TC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.004400000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGC..................................................................2914.004400000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAA...............................................................2714.004400000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGC..................................................................2614.004400000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATCAACGTCGGCTTCCTGCGTT...................2814.004400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCT--T-CAACCTC--TCTAATGCCAGTCT-CT.............................................................................................................................................................................................................................................................2814.004400000
................................................................................................................................................ACGATGACGACGCTATCGAGCTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATCAACGTCGGCTTCCTGCG.....................2613.003300000
.......................................................................................................................................................................C-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--.........................................................................................................................................................................................................................................................................................2713.003300000
.....................................................................................................................................................................TCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------................................................................................................................................................................................................................................................................................................2513.003300000
..............................................................................................................................................................................................................................................................................................................................................................................TACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAG...................................................................................................................................................................................................................................................................2913.003300000
.............................................................................................................................................GA-ACGATGACGACGCTATCGAGCTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
.......................................................................................................................................................................................................................................................................................................................................................................G-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TC............................................................................................................................................................................................................................................................................2613.003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTC--TCTAATGCCAGTCT-CTTTGTC........................................................................................................................................................................................................................................................2713.003300000
.........................................................................................................................................................................TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--.........................................................................................................................................................................................................................................................................................2613.003300000
.............................................................................................................................................................TATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCG.....................................................................................................................................................................................................................................................................................................................................................................2713.003300000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCTTCCTGCGTTTGTTTCGTGCA........2713.003300000
......................................................................................................................................TAGTGTAGA-ACGATGACGACGCTATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003200010
................................................................................................................................................................................................................................................................................................................................................................................CACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGTC.................................................................................................................................................................................................................................................................2913.003300000
..................................................................................................................................................GATGACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
.....................................................................................................................................................................TCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-C.............................................................................................................................................................................................................................................................................................2712.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTACAGTCGAACTCAATCAACG..................................2612.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTC--TCTAATGCCAGTCT-CTTTGTCTGT.....................................................................................................................................................................................................................................................2912.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTC--TCTAATGCCAGTCT-CTTTG..........................................................................................................................................................................................................................................................2512.002200000
.......................................................................................................................................................................C-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CC............................................................................................................................................................................................................................................................................................2612.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAGTCGAACTCAATCAACGTC................................2612.002200000
...................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGTCT-C..............................................................................................................................................................................................................................................................2812.002200000
....................................................................................................................................................................CTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------................................................................................................................................................................................................................................................................................................2612.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CTTTGTCTGTTCTGTTCTCTCTCTC......................................................................................................................................................................................................................................2612.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTGTTCTGTTCTCTCTCTCTT....................................................................................................................................................................................................................................2612.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAATAATATTTTACAGTCGAACT...........................................2712.002200000
.................................................................................................................................................................GAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTAC..................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTACAGTCGAACTCAATCAACGTCG...............................2912.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGTTCTGTTCTCTCTCTCTTT--.................................................................................................................................................................................................................................2612.002200000
..................................................................................................................................................................................................................................................................................................................................................................GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACC..................................................................................................................................................................................................................................................................................2712.002200000
.....................................................................................................TAGATTGGAA-------------------G-TGTAGTGTAGA-ACGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGTCGGCTTCCTGCGTTTGTT...............2612.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTC--TCTAATGCCAGTCT-CTTTGTCTGT.....................................................................................................................................................................................................................................................2812.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCGAACTCAATCAACGTCGGCT............................2612.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATA..........................................................2812.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAAT..............................................................2712.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAACCTC--TCTAATGCCAGTCT-CTTTGTC........................................................................................................................................................................................................................................................2912.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACGTCGGCTTCCTGCGTT...................2312.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATA..........................................................2512.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTGTCTGTTCTGTTCTCTCTCTC......................................................................................................................................................................................................................................2812.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGC..................................................................2812.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTGTTCTGTTCTCTCTCTCTTT--.................................................................................................................................................................................................................................2712.002200000
.....................................................................................................................................................................................................................................................................................................................................................................GCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TC............................................................................................................................................................................................................................................................................2812.002200000
.................................................................................................................................................................................................................................................................................................................................................................................ACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGTC.................................................................................................................................................................................................................................................................2812.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATCAAC...................................2812.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATAT.........................................................2912.002200000
..............................................................................................................................................................................................................................................................................................................................................................................TACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCA....................................................................................................................................................................................................................................................................2812.002200000
...............................................................................................................................................................TCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCG.....................................................................................................................................................................................................................................................................................................................................................................2512.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAGTCGAACTCAATCAACGTCGGC.............................2912.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATC......................................2512.002200000
..........................................................................................................................................................................CGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--.........................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACGTCGGCTTCCTGCGTTTGTTT..............2811.001100000
..................................................................................................................................................................AGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACA---------------------------------------------------------------................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................GACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................................TGACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA..............................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................CACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGT..................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................................TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CC............................................................................................................................................................................................................................................................................................2511.001100000
......................TACGATTT--TAAC--------------------------------GATAACTATTAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAATCAACGTCGGCTTCCTGCGTG...................2911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTTT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--.................................................................................................2611.001100000
...................................................................................................................................................ATGACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCCTGCGTTTGTTTCGTGCA........2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGTCGAACTCAATCAACGTCGGCT............................2811.001100000
..................................................................................................................................................GATGACGACGCTATCGAGCTCC-TCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCC.................................................................2511.001100000
...................................................................................................................................................................GCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................TGTAGTGTAGA-ACGATGACGACGCTATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCT-CTTTGTCTGTTCTGTTCTCTCTC........................................................................................................................................................................................................................................2711.001100000
...............................................................................................................................................................TCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTAC..................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTTTG.................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................CACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCC.....................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGTTCTCTCTCTCTTT--TA-----------TT..................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--TCTAATGCCAGTCT-CTTTGTCTGTTC...................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAATGCCAGTCT-CTTTGTCTGTTCTG.................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCTCTCTCTTT--TA-----------TTTTTAC.............................................................................................................................................................................................................2511.001100000
................................TAAC--------------------------------GATAACTATTAACTGA------------TAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTTTACAGTCGAACTCAATCAAC...................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAA............................................................2711.001100000
.......................................................................................................................................................................C-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-C......................................................................................................................................................................................................................................................................................2911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATCAA....................................2711.001100000
.....................................................................................................................................................................TCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-..............................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGC..................................................................2711.001100000
.................................AAC--------------------------------GATAACTATTAACTGA------------TAGCTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGTTCTCTCTCTCTTT--TA-----------....................................................................................................................................................................................................................2511.001100000
......................................................................................................AGATTGGAA-------------------G-TGTAGTGTAGA-ACGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTTT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CT....................................................................................................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATA..........................................................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTTTGTT...............2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCCTGCGTTTGTTTCGTGCAGC......2611.001100000
..........................................................................................................TGGAA-------------------G-TGTAGTGTAGA-ACGATGACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTC--TCTAATGCCAGTCT-CTTTGT.........................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTTTGTT...............2911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................G-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACCTC--T.............................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATCAACGTCGGCTTCCTGCGTT...................2711.001100000
.................................................................................................................................................................GAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------................................................................................................................................................................................................................................................................................................2911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTC--TCTAATGCCAGTCT-CTTTGTCTG......................................................................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGTCGAACTCAATCAACGTCGGC.............................2811.001100000
.......................................................................................................................................................................C-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-C.............................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGT--TCC-----------------TTTGGCCAATAATATTTTACA...................................................2911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTCGGCTTCCTGCGTT...................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAATGCCAGTCT-CTTTGTCTGTTCTGT................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................GATTGGAA-------------------G-TGTAGTGTAGA-ACGATGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--TCTAATGCCAGTCT-CTTTGTCTGTTC...................................................................................................................................................................................................................................................2911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATAA.........................................................2911.001100000
....................................................................................................................................................................................................................................................................................................................................................................AGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACCTC--..............................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................CC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCT--T-CAACCTC--TCTAATGCCAGTCT-CTT............................................................................................................................................................................................................................................................2911.001100000
...................................................................................................................................................................................................................................................................................................................................................................AAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CAACC..................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T--T-CAACCTC--TCTAATGCCAGTCT-CTTT...........................................................................................................................................................................................................................................................2711.001100000
...............................................................................................................................................................TCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTA...................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATATTT.......................................................2811.001100000
.....................................................................................................................................................GACGACGCTATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAG.............................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................TAGATTGGAA-------------------G-TGTAGTGTAGA-AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................................................................TATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGC......................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAGTCGAACTCAATCAACGTCGG..............................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--TCTAATGCCAGTCT-CTTTGTCTG......................................................................................................................................................................................................................................................2611.001100000
..........................................................................TATTAACTGA------------TAGCTTAGATTGGAA-------------------G-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------T.......................................................................1811.001100000
..........................................................................................................................................................................CGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-C......................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................ATCGAGCTCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCG.....................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTT...................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTACAGTCGAACTCAATCAACGTC................................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTTCCTGCGTTTGTTTCGTGCAGC......2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTGTCTGTTCTGTTCTCTCTCT.......................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................TACACC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGC......................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTCGTGCAGCGCGTCT2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTC--TCTAATGCCAGTCT-CTTTGTC........................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT--T-CAACCTC--TCTAATGCCAGTCT-CT.............................................................................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAATCAACGTCGGCTTCCTGCG.....................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTTACAGTCGAACTCAAT.......................................2411.001100000
.........................................................................................................................................................................TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-CA.....................................................................................................................................................................................................................................................................................2911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATCAACGTCGGCTTCCTGCGTTTG.................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAA............................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAA...............................................................2611.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACTCAATCAACGTCGGCTTCCTGC......................2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAAT..............................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCT.................................................................2911.001100000
......................................................................................................................................................................CC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CC............................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCTTCCTGCGTTTGTTTCGTG..........2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATAT.........................................................2611.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGCGTTTGTTTCGTGCAGCGCGTCT2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAATATTTTACAGTCGAACTCAAT.......................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTC--TCTAATGCCAGTCT-CTTTGTC........................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAA...............................................................2911.001100000
.....................................................................................................................................................................TCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTA...................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................TAGATTGGAA-------------------G-TGTAGTGTAGA-ACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................................................................................................................................................................................CC---------------------------------------------------------------T-CCT--T-CAACCTC--TCTAATGCCAGTC.................................................................................................................................................................................................................................................................2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCGTTTGTTTCGTGCAGCGCG...2511.001100000
..............................................................................................................................................A-ACGATGACGACGCTATCGAGCTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTTCCTGCGTTTGTTTCGTGCA........2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGC......................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTTT--TA-----------TTTTTACTC-----------------------------------------------------------------------------------------------------C.....................................................................................................2511.001100000
..........................................................................TATTAACTGA------------TAGCTTAGATTGGAA-------------------G-TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.............................................................................TAACTGA------------TAGCTTAGATTGGAA-------------------G-TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................GAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTACACC---------------------------------------------------------------T-CCT--T-C......................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAACCTC--TCTAATGCCAGTCT-CTTTG..........................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAACTCAATCAACGTCGGCTTCC.........................2611.001100000
.....................................................................................................................................................................TCC-TCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCG-ACGCGTAC..................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
AC------------------GGAACGATTT--TAAC--------------------------------GATAACTATTAACCGT------------TAGCATAGATTGGAA-------------------G-TGTAGTGTAGA-TCGATGACGACGATATCGAGCTCC-TCGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGCG-ACGCATACACC---------------------------------------------------------------A-CCT--T-CAACCAT--TCTAATTCCAGTCT-CTTTATCTGTTCTGTTCTCTCTCTCTCT--TT---------TATTTTTACTC-----------------------------------------------------------------------------------------------------CTT--TGT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTACGTTTGTTTCGTGCGGCGCGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
AC------------------GGAACGTGCTA-------------------------------------------TACTAACCGA------------TAGTTTAGATTGGAATGCATC-------------G-AATC-CGTAGA-TCGATGGCGAAGCCGTA----------------------------------------------------------------------------------ACCG-AAGCC-----------------------------------------------------------------------------------------GAG---------------------------CTCCATCGGA-TACCCCGTATCT-TA-A------GA-----------------------CGGGGGACCAATGAAATCAC--TCTAATTCC-GTAT-CCTTATCTGTTCTGTTTTCTCTCTCTCT--T-------------T---------------TTG--TTTCTTTTGA------------------------------------------------------------------------------CTC--TAT--TCC-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AC------------------GGAACGAGCTA------------------------------------------CTACTAATCGA------------TAGTTTAGATTGAAATGCATC--GAACCCACATCG-AATCACGTAGAATCGATGGCGACGCCTTTTAGTTCC-ATGGGCTTCTC------------------------------------------------------------CCTTCC-------CCACAAAAAAAATAAAAAATAAAAAAAAGA-----------------------------------------------------------AAG---------------------------CC-CATCGAA-T---TCGTACTT-TA-A------GA-----------------------CGGGA-TCG--T-AAACCAG--TCTAATGGCAATTT-CCTTATCTGTTCTGTTT-CTCTCTCTCT--TT---------CTTT---------------TTG--CTTCC-TCCCCT-------CTCTCCCTTTCTCCCTCTCT-CCCCACACACACACTCTCTCTCTCTCTCACTCCCTCACTCTTGATCGACCA--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGCCTSizeHit CountTotal NormTotal
No Reads
droEle1
AC--TACTA--ACTACTAACGGAACGAGCTA---------------------------------------------CTTATCGA------------TAGTTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGTTCT-TTGA-----------------------------------------------------------------------------GCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATCGAA-T---TCGTA-TGTT-AA------GA-----------------------CGGGA-ACG--T-TAACCAG--TCTAATGCCAAATT-CCTTATCTGTTCTGTTTTCTCTCTCTCT--C-------------T---------------TTG--TTTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGCCTSizeHit CountTotal NormTotal
No Reads
droRho1
AC------------------GGAACGAGCTACT-----------------------------------------TACTAATCGA------------TAGTTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGGGACGCCTTCTAGTTCC-TTGA-----------------------------------------------------------------------------GCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATGGAA-T---TCGTA-TGTT-AA------GA-----------------------CGGGA-ACG--T-TAACCAG--TCTAATGCCAATTT-CCTTATCTGTTCTGTTTTCTCTCTCTCT--T-------------T---------------TTG--TTTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCGGCGCGCCTSizeHit CountTotal NormTotal
No Reads
droBia1
AC------------------GGAACGAGCTA------------------------------------------CTACTAATCGA------------TAGTTTAGATTGAAATGCATC-------------G-AGTCACGTAGA-TCGATGGCGACGCCTTCTAGTTCCCCCGAGCTCCCC---------------------GA--------------------GT-TCCCGGGTTCCC-GGGTTC----------------------------------------------------------------------------------------------------------------------------------CATCGAA-T---CCGTACTA-TA-A------GA-----------------------CGGGA-TCG--T-TAACCAG--TCTAATGCCAATTT-CCTTATCCATTCTGTTTTCTCTCTCTCC--CC---------TTTT---------------TTG--TTTCT-TCGACTCT-----C--------------------------------------TCT---------------------------TCCTTTGG--TGT-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGCCTSizeHit CountTotal NormTotal
No Reads
droTak1
AC------------------GGAACGAGCTA---------------------------------------------CTAATCGATACTAATTCAAATAGTTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGA-TCATAGTTCC-CTGAGATCCCC---------------------GA--------------------GCTCCCAGGGTTCC--------------------------------------------------------------------------------------------------------------------------------------------TTGAA-T---CCGTA-TGTT-AA------GA-----------------------CGGAA-ACG--T-TAACCAG--TCTAATGCCAATTT-CCTTATACATTCTGTTTTCTCTCTCTCC--TC---------TTTT---------------TTG--TTTCT-TCGACTCCATTCTC--------------------------------------TCT---------------------------TCCTTT----GGT-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGTCTSizeHit CountTotal NormTotal
No Reads
droEug1
CT------------------ACTACTACTA--CTAC--------------------------------TACTACTACTAATCGA------------TAGTTTAGATTAAAACCCATC-------------G-AATCACGTAGA-TCGATGACGACGCCTTCTAGTTCC-TTGAGTTCCTT---------------------ACATTCCCTTGA----------GTCTC------TCCCTCGA----------------------------------------------------------------------------------------------------GAG---------------------------CT-CATCGAA-A---TTGTATTG-CA-A----AAAAAGAAGAAGAAAAAAAAACAAAATTGGGA-ACT--T-GAACCTT--TCTAATGCCAATAT-CCTTATCCATTCTGTTTTCTCTTTCTCT--TT-----------TTTTGATTTGTTTAC--TCC--T-----TCCGACA------------------------CACACACACACACACACTCTCTCT---------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGTGCGGCGCGACTSizeHit CountTotal NormTotal
No Reads
dm3
CC-----------------------------------------------------------TACTGCTTACTACTACCAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T---TCGCACCG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAA--TCTAATGCCATTTT-CCTTATCCGTTCTGTTTTCTCTCTCTCTCTCGTTTTT------TTTTTATTTGTTTGT--TTATTTCTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACTCAATCAACGTCGGCTTCC.........................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTTCCTGCGTTTATTTCGAGCGGC......2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTTATTTCGAGCGGCGCGACT2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
....................................................................................................................C-------------G-AATCACGTAGA-TCGATGGCGACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCGTTTATTTCGAGCGGCGCGACT2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATCAACGTCGGCTTCCTGC......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ACCAATCGA------------TAGCTTAGATTGAAATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TC-------------G-AATCACGTAGA-TCGATGGCGACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTTACAGTCGAACTCAATCAACG..................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCCATTTT-CCTTA..........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TCCTT---------------------GA--------------------GTTTCCCGAGTTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACCAA--TCTAATGCCATTTT-CC.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTTTGT--TTATTTCTCT-TCGA------------------------------------------------------------------------------C.....................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCGTTTATTTCGAGCGGCGCGACT2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTTTAT................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCACGTAGA-TCGATGGCGACGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TACTACTACCAATCGA------------TAGCTTAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGGCTTCCTGCGTTTATTTCGA...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATCAACGTCGGCTTCCTGCGTT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTTCCTGCGTTTATTTCGAGCGGCGC....3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGTCGGCTTCCTGCGTT...................2411.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCGCACCG-TAAT------GA-----------------------TGGGA-ACT--TGAAAC...................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATCAACGTCGGCTTCCTGC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTTTTATTTGTTTGT--TTATG..............................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGGCTTCCTGCAA....................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AC------------------GGAACGAGCTACTAACTACCTACTAACTACT-------ACCTACTGCTTACTACTACCAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T---TCGCACTG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAG--TCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCTCTCG--TT-----------TTTTTATTTGTTTGT--TTA--TCTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTGT--TTA--TCTC..........................................................................................................................................................................................1540.25100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTGT--TTA--TCTCA-........................................................................................................................................................................................16200.05100000000001000000
droSec2
AC------------------GGAACGAGCTACTAACTGCCTACTGACTACT-------ACCTACTGCTTACTACTAATAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCTT---------------------GA--------------------GTTTCCCGAGTTCCTTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T---TCGCACTG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAG--TCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCTCTCT--CG-------TT--TTTTTATTTGTTTGT--TTA--TCTCT-TCGA------------------------------------------------------------------------------CTC--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AT------------------------------------------------------------ACTGC-TACTACTATCATTCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGACGACGCCTTCTAGATCC-TTGAGTTCCCCCAAGTTTCCCCGAGATTCCCCAAGTTTCCCTGAGTTTTCCCGAGTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------GAG---------------------------CT-CATTGAA-T-CTTCGCACTG-TAAT------GA-----------------------TGGGAAACT--TGCAAGCAGTCTCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCTCTCT--CG-------TT--T-TTTATTTGTTTGT--TTG--TCTCT-TCGA------------------------------------------------------------------------------CTC--TCTTCTTC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTATTTCGAGCGGCGCGACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA------------------------------------------------------------------------------CTC--TCTTCTTC-----------------TTTGGC..................................................................2111.00100100000000
.................................................................................................................................................................................................................................TTCCCGAGTTCCCTGGATTCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
AC------------------GGAACGAGCTACTAACTACCTACTACCTACTACATAGTACCTACTGCTTACTACTACCAATCGA------------TAGCTTAGATTGAAATGCATC-------------G-AATCACGTAGA-TCGATGGCGACGCCTTCTAGATCC-TTGAGTTCCCC---------------------GA--------------------GTTTCCCGAGTTCCCTGGATTCCGTGAGCC-----------------------------------------------------------------------------------------AAG---------------------------CT-CAACGGAAT---TCGCACTG-TAAT------GA-----------------------TGGGA-ACT--TGAAACCAG--TCTAATGCCAATTT-CCTTATCCGTTCTGTTTTCTCTCCCTCT--CG-------TT--T-TTTATTTGTTTGT--TTG--TCTCT-TCGA------------------------------------------------------------------------------CTG--TCT--TCC-----------------TTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGAGCGGCGCGACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................CAATCGA------------TAGCTTAGATTGAAATGCATC-------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
dp5
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATTTGATTTCCATCAACTTCTTCCGCCTGTTTCGTGTGATGCGCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AC------------------GGAACGATCTA---------------------------------------CTACTACTAACCGA------------TAGTTTAGATTGGAATGCATCATGAG--AGCATCATCATCAAGTA----TGATGACG-CGCTTTCGAGTTCG-AAGAGTTCCCC----------------------------------------------------------TC------------------------------------AAAAAGG-----------------------------------------------------------GAT---------------------------TC-GGACGAA-T---TCACGTTA-TATTACGAAAAA-----------------------CGGGG-AC-----AAACCAC--TCTAATACCAATCT-CCTTTTCCGTTCTGTTTTCTCTCT-TCT--TT---------TATT---------------TTG--TTTCT-TCGAATCT---------------------------------------------------------------------------GC--TCT--TCCAAAACAACAACAAACCTTTTGGCCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-ATTTATCTTTTCTT--CTCCTG--------CGATTATGGTT--T-TTCTTTTGGTTTT--TTG--GTTTT-TG--------------------------------------------------------------------------------GTG--TCT--TCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATCAACGTCGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGTCGAACTCAATCAACGTCGGC.............................2811.00100100
droVir3
CTACTACTACTACTACTA----T-----------------------------------AACTGCTACTTAGAACTAA----CGAACTTAATTAAAAAAGCAAAAAGCAAAAAGCAGA-------------G-AAACA--------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGAGATCATATTCGAACTGAGCTGAAAGGCGTCA-ATTTCGAATACATCTGAATTCATTGGTA--AAA-ACG-ATACA--------------------------------------------------------------------------CCATCAC--TCTAAT-CTACTCT-CCTTATT--TTCTGTTTT-TCTCT---------------------------------------------------------------------------------------------------------------------------------TTT--TCT--CCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATCAACGTTGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
CTACTACTACTACTACTA----T-----------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081000000000000000100000000000000000000000000000000000000000000000
droMoj3
CTACTACTATTCTTACTG-------------------------------TT-------AGCTGCTACTAA-------GAACTAA------------CGAACCAATTTGAAAAAAACA-------------A-AAAAACAA---------------------------------------------------------------------------------------------------------------------------------------AAAGATGAAACTAAACCTGAGACTATATTCGAAGGGTTCCCCTAGGCAACTCGCCTCGAATATATCTGAACTCATCGGTTTCACA-ACG-ATACA--------------------------------------------------------------------------CCATCTC--TCTAAT-CTGCTCT-CCTTATT--TTCTGTTTTTCTT--------CG-------TT--T-TTTTTCTCTCTCTCTTTC--TCTCT-CTCT------------------------------------------------------------------------------CTC--TCG--CCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATCAACGTTGGCTTCCTGCGTTTGTTTCGTGCGGCGCGTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TA-CCACTAC------TA----TAACTGCTA--------------------------------CTACTAAGTACTAA----CGA--------------ACTTAA--TGAAAAAAAAA-------------A-AAAGAAGA---------------------------------------------------------------------------------------------------------------------------------------AAAGCAGAGAAACAAACTGAGATAATATTCGAACTGAGCTGAAAAGCATCA-ATTTTGAATACATCTGAATTGGTCTGTAAGGAACACG-GGACA--------------------------------------------------------------------------ACATCAC--TCTAATACTATTTCTCCTTATT--TCCTGTTTC-TC-----------------------------------------G--TTTCT-CT--------------------------------------------------------------------------------CTT--TTC--TCC-----------------TTTGACCAATAATATTTTACAGTCGAACTCAATC-ACGTCGGCTTCTTGCGTT-G-TTCGTGCGGCCCGTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:01 AM