ID:

dan_1016

 Coordinate:

scaffold_12947:1557363-1557513 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.7 -19.4 -19.4

Flybase annnotation

exon [dana_GLEANR_22141:3]; CDS [Dana\GF19736-cds]; intron [Dana\GF19736-in]

No Repeatable elements found

mature
  1. scaffold_12911:216095-216120 +
  2. scaffold_12911:2029737-2029762 +
  3. scaffold_12916:4999674-4999699 -
  4. scaffold_12948:599063-599088 +
  5. scaffold_12984:94084-94109 +
  6. scaffold_13034:75414-75439 +
  7. scaffold_13034:1999926-1999951 +
  8. scaffold_13034:2158663-2158688 +
  9. scaffold_13034:2177461-2177486 +
  10. scaffold_13137:42985-43010 +
  11. scaffold_13137:281413-281438 +
  12. scaffold_13137:751762-751787 +
  13. scaffold_13137:1313331-1313356 +
  14. scaffold_13230:3540527-3540552 +
  15. scaffold_13250:1091321-1091346 +
  16. scaffold_13258:495420-495445 +
  17. scaffold_13258:585871-585896 +
  18. scaffold_13258:1143705-1143730 +
  19. scaffold_13417:5507318-5507343 +
  20. scaffold_13770:348126-348151 +
  21. scaffold_12916:5001308-5001333 -
  22. scaffold_12916:5002928-5002953 -
  23. scaffold_12926:176461-176486 -
  24. scaffold_12947:1454979-1455004 -
  25. dan_1016  scaffold_12947:1557471-1557496 -
  26. scaffold_13010:200973-200998 -
  27. scaffold_13082:3177749-3177774 -
  28. scaffold_13111:676555-676580 -
  29. scaffold_13230:48500-48525 -
  30. scaffold_13230:1513350-1513375 -
  31. scaffold_13260:1123804-1123829 -
  32. scaffold_13337:20872729-20872754 -
  33. scaffold_13337:21646592-21646617 -
  34. scaffold_13339:4357276-4357301 -
  35. scaffold_13417:3071757-3071782 -
  36. scaffold_13417:5286484-5286509 -
  37. scaffold_13417:6582631-6582656 -
  38. scaffold_13770:209695-209720 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAACACCTATTAGATTTTTGTAAAAATAAAAAACAATCTTGGCACATTGTTTTTTTTCCAGTTGGAATGCGTACGAATGTCGCGTTCGACATTAGATAATTACCCATATATAAGATGTGAATAAAGTTAAATTTACAAAACTTTGCCCTTTTTTATGTCCCGAATTTCATTCAAGTATTAAATGTACAATTATTTTTACAGATGATCATCATTATGAAAAACATCCTAACGAGGTCGTAAAGAATGAAGAA
**************************************************..........((((.((((((.((....))))))))))))...((((((((............(((((((((((((((..........)))))))......))))))))..((((...))))..((((.....))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V105
male body		 V106
head
........................................................TGCAGTTGGAATGCGTACGAATGTCGC........................................................................................................................................................................ 27 1 20 3.20 64 64 0 0 0 0
...................................................................TGCGTACGAATGTCGCGTTCGACATT.............................................................................................................................................................. 26 0 20 2.60 52 40 12 0 0 0
...................................................................TGCGTACGAATGTCGCGTTCGACAT............................................................................................................................................................... 25 0 20 1.35 27 0 0 27 0 0
.............................................................TTGGAATGCGTACGAATGTCGCGTT..................................................................................................................................................................... 25 0 20 1.10 22 6 15 0 0 1
....................................................................................................................................................................................................................TATGAAAAACATCCTAACGAGGTCGTA............ 27 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................................................................................................TATGAAAAACATCCTAACGA................... 20 0 1 1.00 1 1 0 0 0 0
.............................................................TTGGAATGCGTACGAATGTCGCGTTC.................................................................................................................................................................... 26 0 20 0.85 17 0 17 0 0 0
........................................................TGCAGTTGGAATGCGTACGAATGTC.......................................................................................................................................................................... 25 1 20 0.65 13 13 0 0 0 0
...................................................................TTCGTACGAATGTCGCGTTCGACATT.............................................................................................................................................................. 26 1 20 0.60 12 12 0 0 0 0
..........................................................CAGTTGGAATGCGTACGAATGTCGCGT...................................................................................................................................................................... 27 0 20 0.45 9 9 0 0 0 0
...................................................................TGCGTACGAATGTCGCGTTCGACATC.............................................................................................................................................................. 26 1 20 0.35 7 7 0 0 0 0
............................................................GTTGGAATGCGTACGAATGTCGCGT...................................................................................................................................................................... 25 0 20 0.35 7 7 0 0 0 0
..................TGTAAAAATAAAAAACAATCTTGGCACA............................................................................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0 0
.......................................................................TACGAATGTCGCGTTCTACATTATTT.......................................................................................................................................................... 26 3 4 0.25 1 0 1 0 0 0
.............................................................................TGTCGCGTTCGACATTAGTTAATTACCC.................................................................................................................................................. 28 1 4 0.25 1 1 0 0 0 0
...................................................................TGCGTACGGATGTCGCGTTCGACAT............................................................................................................................................................... 25 1 20 0.25 5 0 0 5 0 0
.......................................................................TACGAATGTCGCGTTCTACATTAGTT.......................................................................................................................................................... 26 2 4 0.25 1 0 1 0 0 0
.............................................................................TTTCGCGTTCGACATTAGTTAATTACC................................................................................................................................................... 27 2 4 0.25 1 1 0 0 0 0
...............................................................................TCGCGTTAGACATTACTTAATTACCC.................................................................................................................................................. 26 3 5 0.20 1 1 0 0 0 0
..........................................................CAGTTGGAATGCGTACGAATGTCGCG....................................................................................................................................................................... 26 0 20 0.20 4 4 0 0 0 0
..........................................................CAGTTGGAATGCGTACGAATGTCGC........................................................................................................................................................................ 25 0 20 0.20 4 0 4 0 0 0
..................TGTAAAAATAAAAAAGAATCTTGGCACA............................................................................................................................................................................................................. 28 1 6 0.17 1 1 0 0 0 0
...................................................................TGCGTACGAATGTCGCGTTCGACA................................................................................................................................................................ 24 0 20 0.15 3 0 0 3 0 0
..............................................................TGGAATGCGTACGAATGTCGCGTTC.................................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0
.................................................................AATGCGTACGAATGTCGCGTTCGACAT............................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
..........................................................CGGTTGGAATGCGTACGAATGTCGCGT...................................................................................................................................................................... 27 1 20 0.10 2 2 0 0 0 0
............................................................GTTGGAATGCGTACGAATGTCGCGTTC.................................................................................................................................................................... 27 0 20 0.10 2 0 0 2 0 0
..............................................................TGGAATGCGTACGAATGTCGCGTT..................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
....................................................................GCGTACGAATGTCGCGTTCGACATT.............................................................................................................................................................. 25 0 20 0.10 2 0 0 2 0 0
...................................................................TGCGTACGAATGTCGCGTTCGACATTAG............................................................................................................................................................ 28 0 20 0.10 2 0 0 2 0 0
....................................................TTTTTCCAGTTGGAATGCGTACGAATG............................................................................................................................................................................ 27 0 20 0.10 2 0 0 0 2 0
........................................................TCCAGTTGGAATGCGTACGAATGTCGC........................................................................................................................................................................ 27 0 20 0.10 2 0 1 0 1 0
...........................................................AGTTGGAATGCGTACGAATGTCGCG....................................................................................................................................................................... 25 0 20 0.10 2 0 0 2 0 0
.................................................................................................CATTACCCATAAACAAGATG...................................................................................................................................... 20 3 14 0.07 1 0 1 0 0 0
..........................................................CAGTTTGAATGCGTACGAATGTCGC........................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
..............................................................TGGAATGCGTAAGAATGTCGCGTT..................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
.............................................................TTGGAATGCGTACGCATGTCACCTTC.................................................................................................................................................................... 26 3 20 0.05 1 0 1 0 0 0
...........................................................AGTTGGAATGCGTACGAATGGCG......................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
........................................................TCCAGTTGGAATGCGTACGAATGTCG......................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
...................................................................TGCGTACGAATGTCGCGTTCGACAC............................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
......................................................................GTACGAATGTCGCGTTCGGCATTAGG........................................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0
........................................................TACAGTTGGAATGCGTACGAATGTCGC........................................................................................................................................................................ 27 1 20 0.05 1 0 0 1 0 0
.........................................................CCAGTTGGAATGCGTACGAATGTCG......................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0
.............................................................TTTGAATGCGTACGAATGTCGCGTT..................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
.......................................................................TAAGAATGTCGCGTTCGACA................................................................................................................................................................ 20 1 20 0.05 1 1 0 0 0 0
.......................................................................TACGAATGTCGCGTTCGACAC............................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
...................................................................TGCGTACGAATGTCGCCTTCCACAT............................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0
......................................................TTTCCAGGTGGAATGCGTACGAATG............................................................................................................................................................................ 25 1 20 0.05 1 0 1 0 0 0
...................................................................TGCTGACGAATTTCGCGTTCGACAT............................................................................................................................................................... 25 3 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................................................GAAAAGCACCCCAACGAGG................. 19 3 20 0.05 1 0 0 0 0 1
.......................................................TTCCAGTTAGAATGCGTACGAATG............................................................................................................................................................................ 24 1 20 0.05 1 0 0 1 0 0
.....................................................................CGTACGAATGTCGCGTTCGACATT.............................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
............................................................GGTGGAATGCGTACGAATGTCGCGT...................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
...........................................................AGTTGGAATGCGCACGAATGTCGC........................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
..........................................................CAGTTGGAATGCGTACGAATGTCA......................................................................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0
.....................................................TTTTCCAGTTGGAATGCGTACGAATG............................................................................................................................................................................ 26 0 20 0.05 1 0 0 1 0 0
..........................................................CAGTTGGACTGCGTACGAATGTCGC........................................................................................................................................................................ 25 1 20 0.05 1 0 0 1 0 0
..........................................................CAGTTGGAATGCGTACGAATTTCTC........................................................................................................................................................................ 25 2 20 0.05 1 0 1 0 0 0
.............................................................TTGGAATGCGTACGAATGTCGCGTC..................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
..........................................................CAGTTGTAATGCGTACGAATGTCGC........................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
...................................................................TGCGTACGAATGTCGCGTTCG................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
..........................................................CAGTTGGAATGCGTACGAATGTCTC........................................................................................................................................................................ 25 1 20 0.05 1 0 1 0 0 0
..................................................................CTGCGTACGAATGTCGCGTTCGACAT............................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0
.............................................................TTGGGATGCGTACGAATGTCGCGT...................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
.............................................................TTGGAATGCGTACGAATGTCGCCTTC.................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
...................................................................TTAGTACGAATGTCGCGTTCGACAT............................................................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0
.............................................................GGGGAATGCGTACGAATGTCGCGTT..................................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0
...................................................................TGAGTACGAATGTCGCGTTCGAC................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0
..........................................................CACTTGGAATGCGTACGAATGTCGC........................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
..........................................................CAGTTCGAATGCGTACGAATGTCGC........................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
.....................................................TTTTACAGGTGGAATGCGTACGAA.............................................................................................................................................................................. 24 2 20 0.05 1 0 0 1 0 0
......................................................TTTCCAGTTGGAATGCGTACGAATG............................................................................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0
..............................................................TGGAATGCGTACGAATGTCGCG....................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...................................................................TGCGTACGAATGTCGCGTACGCCAT............................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0
...................................................................TTAGTACGAATGTCGCGTTCGACATT.............................................................................................................................................................. 26 2 20 0.05 1 1 0 0 0 0
.........................................................CCAGTTGGAATGCGTACGAATGTCGC........................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................................AACGAGGTCGCAGAGAATC..... 19 3 20 0.05 1 0 0 0 1 0
...................................................................TGCGTACGAATGTCGCGGTCGCCAT............................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0
.......................................................................TACGAATGTCGCGTTCGACATT.............................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
...................................................................TGCGTACGGATGTCGCGTTCGTCA................................................................................................................................................................ 24 2 20 0.05 1 0 0 1 0 0
..............................................................TGGAATGCGTACGAATGTCGCGTC..................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
.............................................................TTGGAATGCGTACGAATGTCTCGTT..................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATTGTGGATAATCTAAAAACATTTTTATTTTTTGTTAGAACCGTGTAACAAAAAAAAGGTCAACCTTACGCATGCTTACAGCGCAAGCTGTAATCTATTAATGGGTATATATTCTACACTTATTTCAATTTAAATGTTTTGAAACGGGAAAAAATACAGGGCTTAAAGTAAGTTCATAATTTACATGTTAATAAAAATGTCTACTAGTAGTAATACTTTTTGTAGGATTGCTCCAGCATTTCTTACTTCTT
**************************************************..........((((.((((((.((....))))))))))))...((((((((............(((((((((((((((..........)))))))......))))))))..((((...))))..((((.....))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V039
embryo
 M058
embryo
.............................................................................................................................................................................................................AGTAGTAATACTTTGTGT............................ 18 1 1 1.00 1 0 1 0
..........................................................GTCAACCTTACGCATGCTTACAG.......................................................................................................................................................................... 23 0 20 0.50 10 10 0 0
...........................................................TCAACCTTACGCATGCTTACAG.......................................................................................................................................................................... 22 0 20 0.35 7 2 0 5
.........................................................GGTCAACCTTACGCATGCTTACAG.......................................................................................................................................................................... 24 0 20 0.20 4 4 0 0
............................................................CAACCTTACGCATGCTTACAG.......................................................................................................................................................................... 21 0 20 0.15 3 1 0 2
..............................................................ACCTTACGCATGCTTACAG.......................................................................................................................................................................... 19 0 20 0.10 2 2 0 0
.....................................................................GCATGCTTACAGCGCAAGCTGTA............................................................................................................................................................... 23 0 20 0.10 2 2 0 0
....................................................................CGCATGCTTACAGCGCAAGC................................................................................................................................................................... 20 0 20 0.10 2 0 0 2
...................................................................ACGCATGCTTACAGCGCAAGC................................................................................................................................................................... 21 0 20 0.10 2 2 0 0
....................................................................................................................................................ACAAAATACACGGCTTAA..................................................................................... 18 2 15 0.07 1 0 0 1
...........................................................TCAACCTTACGCATGCTTACA........................................................................................................................................................................... 21 0 20 0.05 1 1 0 0
....................................................................CGCATGCTTACAGCGCAAGCTGTAAT............................................................................................................................................................. 26 0 20 0.05 1 1 0 0
..........................................................GTCAACCTTACGCAAGCTTACAG.......................................................................................................................................................................... 23 1 20 0.05 1 1 0 0
........................................................................TGCTTACAGCGCAAGCTGGAAT............................................................................................................................................................. 22 1 20 0.05 1 0 0 1
.....................................................................GCATGCTTACAGCGCATGCTGTAAT............................................................................................................................................................. 25 1 20 0.05 1 1 0 0
..................................................AAAAAAAGGTCAACCTTAGGCATGCTT.............................................................................................................................................................................. 27 1 20 0.05 1 1 0 0
.....................................................................GCATGCTTACAGCGCAAGCT.................................................................................................................................................................. 20 0 20 0.05 1 1 0 0
......................................AGCCGTGGAACAACAAAAAG................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 1
.........................................................GGTCAACCTTACGCATGCTTACA........................................................................................................................................................................... 23 0 20 0.05 1 1 0 0
....................................................................CGCATGCTTACAGCGCAAGCTGTA............................................................................................................................................................... 24 0 20 0.05 1 0 0 1
...........................................................CCAACCTTACGCATGCTTACAG.......................................................................................................................................................................... 22 1 20 0.05 1 0 0 1
....................................................................CGCATGCTTACAGCGCAAGCTG................................................................................................................................................................. 22 0 20 0.05 1 0 0 1
.....................................................AAAAGGTCAACCTTACGCATGCTT.............................................................................................................................................................................. 24 0 20 0.05 1 1 0 0
.............................................................................................................................................AAAGGGGAAAAAACACAGG........................................................................................... 19 2 20 0.05 1 0 0 1
...................................................................ACGCATGTTTACAGCGCAAGCTGTAAT............................................................................................................................................................. 27 1 20 0.05 1 0 0 1
....................................................................CGCATGCTTACAGCGCAAGCT.................................................................................................................................................................. 21 0 20 0.05 1 0 0 1
.....................................................................GCATGCTTACAGCGCAAGCTGTAATC............................................................................................................................................................ 26 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12947:1557313-1557563 - dan_1016 TAACACCTATTAGATT-----T-T------------------------------TGTAAAAATAAAA--------------AACAAT-CTTGGCACATTGTT-----------TTTTT------------------------------TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGCGTTCGACATTAGATAATTACCCATATA-------------T--------AAGATGTGAATAAAGTTAA----------------------------------ATTT------------------------------A-------------------------------------------------------------CAAAACTTTGCCCTTTTTT----------------------------------------------------------------------ATGTCCCGAATTTCATTCAAGTATTAAATGTACAATTATTT---TTACAGATGATCATCATTATGAAAAACATCCTAACGAGGTCGTAAAGAATGAAGAA
droBip1 scf7180000395959:3991-4274 - GAACGTTTTGGGCGTTCATT-T-A------------------------------TAAGAATACACAA-A------------AAAATA-TTTAATATTCT--G------------TGTTTTGGTTTGGAAAGTCCCAACCTCTTAGCCTAGGGATCATTAAAGGTATGGCATTTAGGAAAGAAGGATATGTGCCAAGACTAAAAATATTTGGTTTTAATCACACAAACTTCCCCTTTA-----GTATTAATGTGCCC-AACATTTTTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTAAACTTACAATATTTTTAATTACAGATGATCATCATTATGAGAAGCATCCCAACGAGGTCGTTAAGAATGAAGAA
droKik1 scf7180000302144:5011-5251 + CAAGAGCTATAAGTTAACATTT-A------------------------------TAAAAAAATAGAA--------------ATGAAA-TGTACCATACT--T------------TTTT------------------------------TTT-------------------------------------------------------------------------------------G-----CTTTGAATGCGTACGAATGTCGCGTGCGACATTATGGAAATGCCCATATA-------------T-----------------------------------------------------------AAA-----------------------------------------CATTAGTT-ATGAAATTCG---------------------ATTTTTAAATTTGTT---A---------------------TTAAGCTGTCCAAAAGCTTAATAAAATTTCTC-A-GAAT-ATTTTAGAAAATAATCTTATTAA---------------------------------------------------------------GAACAATTTCGTTAACAA------AAATAATGAAACA
droFic1 scf7180000449699:24236-24360 + TTGTTTAAAA---------------------------------------------------CTATAA--------------TGAAGT-TTAGAGACATGTTATTA-------------------------------------------TTC-------------------------------------------------------------------------------------A-----GATTGAATACGTACCGAAGTCGCATTCGACACAAAAGATTTGCAAACACAAGTCACCGACATAT-----------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAATTC----------------------------------TAATTTA
droEle1 scf7180000491063:27919-28126 - CAAGAGCTAAAGAATTACCT-T-T------------------------------TGTAAAAATAATA--------------CAAAAT-TTGGAG-CTTGTTT-----------TTTTA------------------------------TTC-------------------------------------------------------------------------------------A-----GTTTGAGTGCTTACGCATGTCGTATTCGACAGTAGAGAATTACCCATATC-------------T-----------------------------------------------------------CAT-----------------------------------------CCTGCGG-AGTTTGCTTCCTTTCTTCCTTTTTGGGTATTATTTTGACATTATTAGAAAT-------------------------------------------------------------------------------------------------------------------ATAAATAAGT---TTATAAATTATATTCGTTT---------------------------------TTAA
droRho1 scf7180000779306:72754-72861 - ATGTTTTGGA---------------------------------------------------TTTGAA--------------A-TAAG-TTGTACGTATATTAATA-------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-GAAATTAATTTCAGATGACCACCACCATTA---------------------------------------------------------------CAACAAACATCCCAATGAGGTTGTAAAGAACGAAGAG
droBia1 scf7180000302509:7066-7189 - CACTTTGTAG---CTC-----T-A------------------------------TTTAAAAATAAAA--------------ATTAAT-TTAAAGATTTCGTT------------TTTT------------------------------TTA-------------------------------------------------------------------------------------G-----GTTAGAAC-----------TTACACACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATAAGAGCACCACAATC--------------------------------------------------------------------GATAAATACAATATCAAGGTC-----AAATACACAA
droTak1 scf7180000414700:5679-5869 + GAAGAGTGAAAAGAAAAGCCCA-T------------------------------AATTAAAATTAAA--------------ATCCAT-TGTTTTACAATT-------------TTTTT------------------------------TCA-------------------------------------------------------------------------------------A-----CTTTAAAGGTGTGCAAATGTCCCGAGCGACATTTTGGAAGTGCCCATATA-------------T-----------------------------------------------------------ATATAAA-------------------------------------TATTAAA-AATTTGTATTATTTATTG------------------------------TTA---------------------T-----------------T----TAATTTATATATAAATATTATAAATAAATAATCTTC----------------------------------------------------------------------------------------------------ATTA
droEug1 scf7180000408984:591553-591672 - TTATTCTTTTTAAATTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTCATTTTATTGTAC---------------------T-----------------TAACTATATTTATA-AAAAATATTTTCAGATGACCACCACAATTA---------------------------------------------------------------CGACAAACATCCCAACGAGGTTGTAAAAAACGAAGAG
dm3 chr4:41315-41399 + AAAGAGCTACATC--------T-T------------------------------C--GAAAATAAAA--------------AAAAGG-TT-----------------------TGTTT------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATGCGTAC-AATGTCGCTTTCGACATTAGGGTATTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 4:414514-414604 + TTGTTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------T-----------------A----ATATTTATA-TTAAATATTTTCAGATGACCACCATCATTA---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGTAAAAAATGAAGAG
droSec2 scaffold_30:319587-319677 + TTGTTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------T-----------------A----ATATTTATA-TTAAATATTTTCAGATGACCACCATCATTA---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGTAAAAAATGAAGAG
droYak3 v2_chr2L_random_031:99196-99325 - CAAGAGCTATATGCTTAAAAAT-A------------------------------TTAAAAATTAAAA--------------TTAAGT-CTTCGTACATGTTTTTT-------------------------------------------TT-----------------------------------------------------------------------------------------------------CGTTTGAACATCGCGTGCGACATCAGAGAATTACCCATATA-------------T-----------------------------------------------------------AAATTT------------------------------A-------------------------------------------------------------GAAAAATATACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCA
droEre2 scaffold_4512:676311-676485 - AATTCCCCAACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATTTAAGATATTAAATTTCTCCTTGTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------ATATATA-ATAAATATTTTCAGATGACCACCATCATTA---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGTAAAAAATGAAGAG
dp5 2:6578543-6578713 + AAAAGCTTCT----------------------------------------------TTATAATGGAA--------------ATATATTTCTGAAAATCCCTCTTATTTTGACCTTTTT------------------------------ACC-------------------------------------------------------------------------------------A-----CTTGCAATGTGTGCGATTGTCTCGTTCGAAGCAGTGGAAATGCCCATAAA-------------T-----------------------------------------------------------TTA-----------------------------------------ATTTAAAT-ATGAATTATA---------------------------------------------------------------------------------------TTTATT-GGAATT------------------------ATGTTCTAAATTTAAATTAA---------------------------------------------------------------------------ATACT
droPer2 scaffold_8328:931-1070 - ATATTGATCT--------------------------------------------------------------------------------------------------------TTCT------------------------------GCC-------------------------------------------------------------------------------------A-----CTGGCAATGTGTACGATTGTCCCGTTCGACATCTCGGATATGCCCATATG-------------C-----------------------------------------------------------GCATATGTATGTATGTATGTACATATGTATGTATCTACCAAAAACCCC--------------------------------------------------------------------------------------------------------------------TTCTTTG----------------ATGTTCCGCCTT------------------------------------------------------------------------------------TTAT
droWil2 scf2_1100000004577:2173217-2173402 - CAAGAGCTAAAAGTTTTTCTCT-T------------------------------TTTCAAAATTATA--------------AAGTGT-TTTGACATACGCTTTTT-------------------------------------------T----------------------------------------------------------------------------------------------TTTGAATGCGTACGAATGTCACGTTCGAAAGTAGAGATTTGCCTATATA-------------T-----------------------------------------------------------ACA---------------------------------------------------------------------------------------------------------------------------------------------------TATATA-CAGAAGAATCTCAGGACGCTATGAGTCTTT---------------------------------------------------------------TTTTGAGTCCTCTATCTGATTAAAATGATAAAAGAAC
droVir3 scaffold_12970:8705174-8705294 - ATATTATATACATACATGC----A------------------------------TATAAGAAGAGAA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTAT----------------------------------GTTG------------------------------A-------------------------------------------------------------GAAAAATTTGCTCATTTAAATTTTACT-----------------A-----------------------------------------------------AC------------------GCAAATTGTATT---TTACAAATTATTCGCATGACCCACAACA------------------------ACTT
droMoj3 scaffold_6500:8794643-8794773 + CAAGAGCCAAAGAATTCACTAT-T------------------------------CGTCAAAATAAAA--------------AAAAGT-TTTGGCATTCGTTTTTT-------------------------------------------TTT-------------------------------------------------------------------------------------A-----ACTCAAAAACGTACGAATGTCACATTCGCCACCAGAGAATTGCCCATATA-------------T-----------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAAATAAGGTT
droGri2 scaffold_14906:3622698-3622963 + TAATATCTTTAGGAATAGTATATTTAGTCTACTGAAGACTGCAATCCGAGTCGTACTTGAAATCTGAACAATTTGTACATCATTCGT-TTCGGC-CATACTT-----------TTTTG------------------------------TCC-------------------------------------------------------------------------------------ACTTCCTTCTGAATGTTTCTGTATGCTGTACCCGATAGACCAGATAAACTTTGATC-------------TAAAAAGTTATCTTATCCAAAAAGTTATGTTTGTTTAGCATTA-----------------------------------------------------------------------------TCATTTTTCTTTTCTCAGGTTT-------------------------------------------------------------TGAACAGA---------------------------------------------------TTCCTGTATTTATTGTCCGATTGAT--------------------------------------------------------TTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TAACACCTATTAGATT-----T-T------------------------------TGTAAAAATAAAA--------------AACAAT-CTTGGCACATTGTT-----------TTTTT------------------------------TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGCGTTCGACATTAGATAATTACCCATATA-------------T--------AAGATGTGAATAAAGTTAA----------------------------------ATTT------------------------------A-------------------------------------------------------------CAAAACTTTGCCCTTTTTT----------------------------------------------------------------------ATGTCCCGAATTTCATTCAAGTATTAAATGTACAATTATTT---TTACAGATGATCATCATTATGAAAAACATCCTAACGAGGTCGTAAAGAATGAAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCGACATT.........................................................................................................................................................................................................................................................................................................................................................................................26202.605204012000
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCGACAT..........................................................................................................................................................................................................................................................................................................................................................................................25201.35272700000
...................................................................................................................................................................................................................................................TTGGAATGCGTACGAATGTCGCGTT................................................................................................................................................................................................................................................................................................................................................................................................25201.10220615001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAAAACATCCTAACGAGGTCGTA............2711.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAAAACATCCTAACGA...................2011.001010000
...................................................................................................................................................................................................................................................TTGGAATGCGTACGAATGTCGCGTTC...............................................................................................................................................................................................................................................................................................................................................................................................26200.85170017000
......................................................................................................................................................C-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGCGT.................................................................................................................................................................................................................................................................................................................................................................................................27200.459090000
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCGACATC.........................................................................................................................................................................................................................................................................................................................................................................................26200.357070000
..................................................................................................................................................................................................................................................GTTGGAATGCGTACGAATGTCGCGT.................................................................................................................................................................................................................................................................................................................................................................................................25200.357070000
......................................................TGTAAAAATAAAA--------------AACAAT-CTTGGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.331010000
......................................................................................................................................................C-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGCG..................................................................................................................................................................................................................................................................................................................................................................................................26200.204040000
......................................................................................................................................................C-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGC...................................................................................................................................................................................................................................................................................................................................................................................................25200.204004000
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCGACA...........................................................................................................................................................................................................................................................................................................................................................................................24200.153300000
....................................................................................................................................................................................................................................................TGGAATGCGTACGAATGTCGCGTTC...............................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
.......................................................................................................................................................................................................................................................AATGCGTACGAATGTCGCGTTCGACAT..........................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
..................................................................................................................................................................................................................................................GTTGGAATGCGTACGAATGTCGCGTTC...............................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
....................................................................................................................................................................................................................................................TGGAATGCGTACGAATGTCGCGTT................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
..........................................................................................................................................................................................................................................................GCGTACGAATGTCGCGTTCGACATT.........................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCGACATTAG.......................................................................................................................................................................................................................................................................................................................................................................................28200.102200000
..................................................................................................................TTTT------------------------------TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................27200.102000020
....................................................................................................................................................TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGC...................................................................................................................................................................................................................................................................................................................................................................................................27200.102001010
............................................................................................................................................................................................................................................A-----GTTGGAATGCGTACGAATGTCGCG..................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
....................................................................................................................................................TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCGACAC..........................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.....................................................................................................................................................CC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.............................................................................................................................................................................................................................................................TACGAATGTCGCGTTCGACAC..........................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...........................................................................................................................................................................................................................................................CGTACGAATGTCGCGTTCGACATT.........................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
......................................................................................................................................................C-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCA....................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...................................................................................................................TTT------------------------------TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...................................................................................................................................................................................................................................................TTGGAATGCGTACGAATGTCGCGTC................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.........................................................................................................................................................................................................................................................TGCGTACGAATGTCGCGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
....................................................................................................................TT------------------------------TCC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
....................................................................................................................................................................................................................................................TGGAATGCGTACGAATGTCGCG..................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.....................................................................................................................................................CC-------------------------------------------------------------------------------------A-----GTTGGAATGCGTACGAATGTCGC...................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.............................................................................................................................................................................................................................................................TACGAATGTCGCGTTCGACATT.........................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
....................................................................................................................................................................................................................................................TGGAATGCGTACGAATGTCGCGTC................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
droBip1
GAACGTTTTGGGCGTTCATT-T-A------------------------------TAAGAATACACAA-A------------AAAATA-TTTAATATTCT--G------------TGTTTTGGTTTGGAAAGTCCCAACCTCTTAGCCTAGGGATCATTAAAGGTATGGCATTTAGGAAAGAAGGATATGTGCCAAGACTAAAAATATTTGGTTTTAATCACACAAACTTCCCCTTTA-----GTATTAATGTGCCC-AACATTTTTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTAAACTTACAATATTTTTAATTACAGATGATCATCATTATGAGAAGCATCCCAACGAGGTCGTTAAGAATGAAGAASizeHit CountTotal NormTotal
No Reads
droKik1
CAAGAGCTATAAGTTAACATTT-A------------------------------TAAAAAAATAGAA--------------ATGAAA-TGTACCATACT--T------------TTTT------------------------------TTT-------------------------------------------------------------------------------------G-----CTTTGAATGCGTACGAATGTCGCGTGCGACATTATGGAAATGCCCATATA-------------T-----------------------------------------------------------AAA-----------------------------------------CATTAGTT-ATGAAATTCG---------------------ATTTTTAAATTTGTT---A---------------------TTAAGCTGTCCAAAAGCTTAATAAAATTTCTC-A-GAAT-ATTTTAGAAAATAATCTTATTAA---------------------------------------------------------------GAACAATTTCGTTAACAA------AAATAATGAAACASizeHit CountTotal NormTotal
No Reads
droFic1
TTGTTTAAAA---------------------------------------------------CTATAA--------------TGAAGT-TTAGAGACATGTTATTA-------------------------------------------TTC-------------------------------------------------------------------------------------A-----GATTGAATACGTACCGAAGTCGCATTCGACACAAAAGATTTGCAAACACAAGTCACCGACATAT-----------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAATTC----------------------------------TAATTTASizeHit CountTotal NormTotal
No Reads
droEle1
CAAGAGCTAAAGAATTACCT-T-T------------------------------TGTAAAAATAATA--------------CAAAAT-TTGGAG-CTTGTTT-----------TTTTA------------------------------TTC-------------------------------------------------------------------------------------A-----GTTTGAGTGCTTACGCATGTCGTATTCGACAGTAGAGAATTACCCATATC-------------T-----------------------------------------------------------CAT-----------------------------------------CCTGCGG-AGTTTGCTTCCTTTCTTCCTTTTTGGGTATTATTTTGACATTATTAGAAAT-------------------------------------------------------------------------------------------------------------------ATAAATAAGT---TTATAAATTATATTCGTTT---------------------------------TTAASizeHit CountTotal NormTotal
No Reads
droRho1
ATGTTTTGGA---------------------------------------------------TTTGAA--------------A-TAAG-TTGTACGTATATTAATA-------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-GAAATTAATTTCAGATGACCACCACCATTA---------------------------------------------------------------CAACAAACATCCCAATGAGGTTGTAAAGAACGAAGAGSizeHit CountTotal NormTotal
No Reads
droBia1
CACTTTGTAG---CTC-----T-A------------------------------TTTAAAAATAAAA--------------ATTAAT-TTAAAGATTTCGTT------------TTTT------------------------------TTA-------------------------------------------------------------------------------------G-----GTTAGAAC-----------TTACACACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATAAGAGCACCACAATC--------------------------------------------------------------------GATAAATACAATATCAAGGTC-----AAATACACAASizeHit CountTotal NormTotal
No Reads
droTak1
GAAGAGTGAAAAGAAAAGCCCA-T------------------------------AATTAAAATTAAA--------------ATCCAT-TGTTTTACAATT-------------TTTTT------------------------------TCA-------------------------------------------------------------------------------------A-----CTTTAAAGGTGTGCAAATGTCCCGAGCGACATTTTGGAAGTGCCCATATA-------------T-----------------------------------------------------------ATATAAA-------------------------------------TATTAAA-AATTTGTATTATTTATTG------------------------------TTA---------------------T-----------------T----TAATTTATATATAAATATTATAAATAAATAATCTTC----------------------------------------------------------------------------------------------------ATTASizeHit CountTotal NormTotal
No Reads
droEug1
TTATTCTTTTTAAATTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTCATTTTATTGTAC---------------------T-----------------TAACTATATTTATA-AAAAATATTTTCAGATGACCACCACAATTA---------------------------------------------------------------CGACAAACATCCCAACGAGGTTGTAAAAAACGAAGAGSizeHit CountTotal NormTotal
No Reads
dm3
AAAGAGCTACATC--------T-T------------------------------C--GAAAATAAAA--------------AAAAGG-TT-----------------------TGTTT------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATGCGTAC-AATGTCGCTTTCGACATTAGGGTATTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................TGTTT------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................2180.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................G-TT-----------------------TGTTT------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.....................................................................................................................T------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATGCGTAC-AATGTC.....................................................................................................................................................................................................................................................................................................................................................................................................2580.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TT------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATGCGTAC-A..........................................................................................................................................................................................................................................................................................................................................................................................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGTCGCTTTCGACATTAGGGTATTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2670.1410000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TAATGCGTAC-AATGTCGCTTTCGACAT..........................................................................................................................................................................................................................................................................................................................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATGCGTAC-AATGTCGCTTTCGACATTA........................................................................................................................................................................................................................................................................................................................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TA-------------------------------------------------------------------------------------A-----GACTTAATGCGTAC-AATGTCGC...................................................................................................................................................................................................................................................................................................................................................................................................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTT------------------------------TTA-------------------------------------------------------------------------------------A-----GACTTAATGCGTAC-AATGT......................................................................................................................................................................................................................................................................................................................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATGCGTAC-AATGTCGCTTTCG..............................................................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTGTTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------T-----------------A----ATATTTATA-TTAAATATTTTCAGATGACCACCATCATTA---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGTAAAAAATGAAGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGTTGTAAAAAAT......1711.00100000010000000000
droSec2
TTGTTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---------------------T-----------------A----ATATTTATA-TTAAATATTTTCAGATGACCACCATCATTA---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGTAAAAAATGAAGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAAGAGCTATATGCTTAAAAAT-A------------------------------TTAAAAATTAAAA--------------TTAAGT-CTTCGTACATGTTTTTT-------------------------------------------TT-----------------------------------------------------------------------------------------------------CGTTTGAACATCGCGTGCGACATCAGAGAATTACCCATATA-------------T-----------------------------------------------------------AAATTT------------------------------A-------------------------------------------------------------GAAAAATATACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AATTCCCCAACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATTTAAGATATTAAATTTCTCCTTGTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------ATATATA-ATAAATATTTTCAGATGACCACCATCATTA---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGTAAAAAATGAAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................AGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCT...............................................................................................................................................................................................................................................................................................................................2522.0040000004
...........................................................................................................................................................................TTACAAAAGA----------------------------------------ACAAACTTATCCTTTA-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2821.5032100000
.....................................................................................................................................................................AATTATTTACAAAAGA----------------------------------------ACAAACTTATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2821.5033000000
.................................................................................................................................................................................AAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCT...............................................................................................................................................................................................................................................................................................................................2621.5032000010
.........................................................................................................................................................................................................................................TTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATTTAAGA...................................................................................................................................................................................................................................................................................................................2221.0022000000
.........ACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0021000010
............................................................................................................................................................................TACAAAAGA----------------------------------------ACAAACTTATCCTTTA-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2721.0020200000
.......CAACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020001010
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTA..............................................................................................................................................................................................................................................................................................................................2821.0021100000
.........ACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.0022000000
............................................................GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0021000010
..................................................................................................................................................................................................................................CTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATT...........................................................................................................................................................................................................................................................................................................................2121.0020001010
................TGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0020001010
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTTA-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2321.0021100000
............................................................GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0021100000
..............................................................................................................................................................................................................................CAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATT...........................................................................................................................................................................................................................................................................................................................2521.0020200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------CAACAAACATCCCAACGAGGTTGT.............2511.0010000010
...........................................................................................................................................................................TTACAAAAGA----------------------------------------ACAAACTTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0022000000
......................................................................................................................................................................ATTATTTACAAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2821.0020200000
.........................................................................................................................................................................ATTTACAAAAGA----------------------------------------ACAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020200000
.............................................................................................................................................................................................................................ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCT...............................................................................................................................................................................................................................................................................................................................2221.0021100000
........................................................................................................................................................................TATTTACAAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2621.0022000000
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCT...............................................................................................................................................................................................................................................................................................................................2721.0021100000
........AACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0021100000
.....................................................................................................................................................................AATTATTTACAAAAGA----------------------------------------ACAAACTTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5011000000
............................................................................................................................................................................TACAAAAGA----------------------------------------ACAAACTTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000
.........................................................................................................................................................................................................................................TTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATTTAAGATATT...............................................................................................................................................................................................................................................................................................................2620.5011000000
.......................................................................................................................................................................TTATTTACAAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5011000000
.............................................................................................................................................................................................................................ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TC................................................................................................................................................................................................................................................................................................................................2120.5010100000
.............................................................A--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAAGA----------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5011000000
.................................................................................................................................................................................AAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................2420.5011000000
............................................................GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAAGA----------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000100
.............................................................................................................................................................................ACAAAAGA----------------------------------------ACAAACTTATCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000
.........ACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
..........CCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000100
............................................................GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
.........................................................................................................................................................................ATTTACAAAAGA----------------------------------------ACAAACTTATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5011000000
...............................................................................................................................................................................................................................AAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCT...............................................................................................................................................................................................................................................................................................................................2020.5011000000
..............................................................................................................................................................................CAAAAGA----------------------------------------ACAAACTTATCCTTC................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000
.....................................................................................................................................................................AATTATTTACAAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2920.5011000000
..................................................................................................................................................................................................................................CTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATTAT.........................................................................................................................................................................................................................................................................................................................2320.5010100000
..............TTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000
............TTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010010000
............................................................................................................................................................................TACAAAAGA----------------------------------------ACAAACTTATCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000
...................................................................................................................................................................................GA----------------------------------------ACAAACTTATCCTTTA-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000000
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000000
......................................................................................................................................................................ATTATTTACAAAAGA----------------------------------------ACAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010001000
...............................................................................................................................................................................AAAAGA----------------------------------------ACAAACTTATCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000000
......................................................................................................................................................................ATTATTTACAAAAGA----------------------------------------ACAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000100
..............................................................................................................................................................................................................................CAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATTT.......................................................................................................................................................................................................................................................................................................................2920.5011000000
.......CAACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5011000000
............TTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5011000000
.............TTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5011000000
........AACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5011000000
......................................................................................................................................................................ATTATTTACAAAAGA----------------------------------------ACAAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000100
.......................................................................................................................................................................TTATTTACAAAAGA----------------------------------------ACAAACTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5011000000
..................T-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000100
........AACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
.....................................................................................................................................................................AATTATTTACAAAAGA----------------------------------------ACAAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5011000000
............................................................GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAAGA----------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010100000
..............................................................................................................................................................................CAAAAGA----------------------------------------ACAAACTTATCCTTTA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000
.........................................................................................................................................................................ATTTACAAAAGA----------------------------------------ACAAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000100
..........................................................................................................................................................................TTTACAAAAGA----------------------------------------ACAAACTTATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5011000000
........................................................................................................................................................ATTA---------AATTATTTACAAAAGA----------------------------------------ACAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000100
...................................................................................................................................................................................GA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TC................................................................................................................................................................................................................................................................................................................................2320.5011000000
..........................................................................................................................................................................TTTACAAAAGA----------------------------------------ACAAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000010
......................................................................................................................................................................ATTATTTACAAAAGA----------------------------------------ACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100
.............................................................................................................................................................................ACAAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000010
.....................................................................................................................................................................AATTATTTACAAAAGA----------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5011000000
........................................................................................................................................................................TATTTACAAAAGA----------------------------------------ACAAACTTATCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5011000000
.................................................................................................................................................................................AAGA----------------------------------------ACAAACTTATCCTTTA-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
........AACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000010
............................................................................................................................................................................TACAAAAGA----------------------------------------ACAAACTTATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
..............................................................................................................................................................................CAAAAGA----------------------------------------ACAAACTTATCCTTTA-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2520.5011000000
............................................................GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000010
.........ACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAA.............................................................................................................................................................................................................................................................................................................................2920.5011000000
...........................................................................................................................................................................TTACAAAAGA----------------------------------------ACAAACTTATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
.......................................................................................................................................................................TTATTTACAAAAGA----------------------------------------ACAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
...........................................................................................................................................................................................................................................................................................................................................CTAATTATTTAAGATATT...............................................................................................................................................................................................................................................................................................................1820.5010100000
...................................................................................................................................................................................................................................TTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATT........................................................................................................................................................................................................................................................................................................................2320.5011000000
...............................................................................................................................................................................AAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000010
......................................................................................................................................................................ATTATTTACAAAAGA----------------------------------------ACAAACTTATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010100000
..............TTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5011000000
.................................................................................................................................................................................AAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TC................................................................................................................................................................................................................................................................................................................................2520.5011000000
.....................................................................................................................................................GCAATTA---------AATTATTTACAAAAGA----------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000001
..............................................................................................................................................................................................................................CAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTAATTATT........................................................................................................................................................................................................................................................................................................................2820.5011000000
.........................................................................................................................................................................ATTTACAAAAGA----------------------------------------ACAAACTTATCCTTC................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010100000
...............TTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AATTATTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000010
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTTA-----T.........................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
................................................................................................................................................................................................................................AACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCTA..............................................................................................................................................................................................................................................................................................................................2020.5010100000
.......CAACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010001000
................................................................................................................................................................................AAAGA----------------------------------------ACAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................2420.5011000000
.............................................................................................................................................................................ACAAAAGA----------------------------------------ACAAACTTATCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000
..............................................................................................................................................................................................................................CAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TC................................................................................................................................................................................................................................................................................................................................2020.5010001000
.........................................................................................................................................................................ATTTACAAAAGA----------------------------------------ACAAACTTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000100
..............................................................................................................................................................................................................................CAAACTTATCCTTTA-----TTA-------------------------------------------------------------------------------------TCT...............................................................................................................................................................................................................................................................................................................................2120.5011000000
...........................................................................................................................................................................TTACAAAAGA----------------------------------------ACAAACTTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000100
.........ACCTTTTTGT-----------------------------------------GA--------------------------------------------------------------------------------------TGCAATTA---------AAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000100
..........................................................................................................................................................................TTTACAAAAGA----------------------------------------ACAAACTTATCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5011000000
..............................................................................................................................................................................CAAAAGA----------------------------------------ACAAACTTATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000000
.........................................................................................................................................................................ATTTACAAAAGA----------------------------------------ACAAACTTATCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010100000
........................................................................................................................................................ATTA---------AATTATTTACAAAAGA----------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
........................................................................................................................................................ATTA---------AATTATTTACAAAAGA----------------------------------------ACAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000100
...............................................................................................................................................................................AAAAGA----------------------------------------ACAAACTTATCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110100000
dp5
AAAAGCTTCT----------------------------------------------TTATAATGGAA--------------ATATATTTCTGAAAATCCCTCTTATTTTGACCTTTTT------------------------------ACC-------------------------------------------------------------------------------------A-----CTTGCAATGTGTGCGATTGTCTCGTTCGAAGCAGTGGAAATGCCCATAAA-------------T-----------------------------------------------------------TTA-----------------------------------------ATTTAAAT-ATGAATTATA---------------------------------------------------------------------------------------TTTATT-GGAATT------------------------ATGTTCTAAATTTAAATTAA---------------------------------------------------------------------------ATACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATATTGATCT--------------------------------------------------------------------------------------------------------TTCT------------------------------GCC-------------------------------------------------------------------------------------A-----CTGGCAATGTGTACGATTGTCCCGTTCGACATCTCGGATATGCCCATATG-------------C-----------------------------------------------------------GCATATGTATGTATGTATGTACATATGTATGTATCTACCAAAAACCCC--------------------------------------------------------------------------------------------------------------------TTCTTTG----------------ATGTTCCGCCTT------------------------------------------------------------------------------------TTATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAAGAGCTAAAAGTTTTTCTCT-T------------------------------TTTCAAAATTATA--------------AAGTGT-TTTGACATACGCTTTTT-------------------------------------------T----------------------------------------------------------------------------------------------TTTGAATGCGTACGAATGTCACGTTCGAAAGTAGAGATTTGCCTATATA-------------T-----------------------------------------------------------ACA---------------------------------------------------------------------------------------------------------------------------------------------------TATATA-CAGAAGAATCTCAGGACGCTATGAGTCTTT---------------------------------------------------------------TTTTGAGTCCTCTATCTGATTAAAATGATAAAAGAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATATTATATACATACATGC----A------------------------------TATAAGAAGAGAA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTAT----------------------------------GTTG------------------------------A-------------------------------------------------------------GAAAAATTTGCTCATTTAAATTTTACT-----------------A-----------------------------------------------------AC------------------GCAAATTGTATT---TTACAAATTATTCGCATGACCCACAACA------------------------ACTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CAAGAGCCAAAGAATTCACTAT-T------------------------------CGTCAAAATAAAA--------------AAAAGT-TTTGGCATTCGTTTTTT-------------------------------------------TTT-------------------------------------------------------------------------------------A-----ACTCAAAAACGTACGAATGTCACATTCGCCACCAGAGAATTGCCCATATA-------------T-----------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAAATAAGGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAATATCTTTAGGAATAGTATATTTAGTCTACTGAAGACTGCAATCCGAGTCGTACTTGAAATCTGAACAATTTGTACATCATTCGT-TTCGGC-CATACTT-----------TTTTG------------------------------TCC-------------------------------------------------------------------------------------ACTTCCTTCTGAATGTTTCTGTATGCTGTACCCGATAGACCAGATAAACTTTGATC-------------TAAAAAGTTATCTTATCCAAAAAGTTATGTTTGTTTAGCATTA-----------------------------------------------------------------------------TCATTTTTCTTTTCTCAGGTTT-------------------------------------------------------------TGAACAGA---------------------------------------------------TTCCTGTATTTATTGTCCGATTGAT--------------------------------------------------------TTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:04 AM