ID:

dan_1014

 Coordinate:

scaffold_12947:1397496-1397646 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.0 -7.5 -7.4

Flybase annnotation

CDS [Dana\GF19009-cds]; exon [dana_GLEANR_20565:2]; intron [Dana\GF19009-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATTATAGATCCAGCAACGAAAAAAAATATATTAGATGATTTGGACAAGGTCTGTATATTTATATACACACAAATAAGCTTAACATTTATTATTGTTTATATTAAAGACAACCACAACACCTGAAAATGCTGACTTCTCTGAGCAAACAATAACAACATCTGCAACTGCAGCTCCTCTAGACTCAACAATTAGCATTCCCCCCCAAGATGCTATCGGAACAAATGTTGAATGCAATGTAGCCTTACAAAG
***********************************************************************************************************************..((((...((.(((..(((..(((................((((....))))...))).))).))).)).)))).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V106
head
 V039
embryo
 V055
head
.......................................................................................................................ACCTGAAAATGCTGACTTCTCTGAGCA......................................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0
.................................................................................................................................................................................................................................GTTGAATGCAATGTAGCCT....... 19 0 1 2.00 2 1 1 0 0 0 0
.AATTATAGATCCAGCAACGAA..................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0
...............................ATTAGATGATTTGGACAAGA........................................................................................................................................................................................................ 20 1 1 2.00 2 0 0 2 0 0 0
...........................................................................................................................GAAAATGCTGACTTCTCTGAGC.......................................................................................................... 22 0 1 2.00 2 0 1 0 1 0 0
...................................................................................................................................................................................................ATTCCCCCCCAAGATGCTATCGGAA............................... 25 0 1 2.00 2 0 1 1 0 0 0
...........................................................................................................................................................................GCTCCTCTAGACTCAACAATTAGC........................................................ 24 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................................................CTATCGGAACAAATGTTGAATGCAAT.............. 26 0 1 2.00 2 0 0 2 0 0 0
...........................................................................................................................................................AACATCTGCAGCTGCAGCTCCTCTAGACT................................................................... 29 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................GATGCTATCGGAACAAATGTT....................... 21 0 1 1.00 1 0 0 0 0 1 0
...................................................................................................................................................................................................ATTCCCCCCCAAGATGCTATCGG................................. 23 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................................................................................AGTCCCCCCCAAGATGCTATCGGAAC.............................. 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CGACCACAACACCTGAAAATGCTGACC................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................ATGTTGAATGCAATGTAGCCTT...... 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................AAATGCTAACTTCTCTGAGC.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGTTGAATGCAATGTAGCCTTAC.... 23 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................AGCATTCCCCCCCAAGATG........................................ 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................AATTAGCATTCCCCCCCAAGATGC....................................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................ATTCCCCCCCAAGATGCTATCG.................................. 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................TGCAGCTCCTCTAGACTCAACAATTAGC........................................................ 28 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................TTAGAGACAACCCCAACACC................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................AGATGCTATCGGAACAAAT.......................... 19 0 1 1.00 1 0 0 0 0 1 0
...............................................................................................................................................................................................................GATGCTATCGGAACAAATGTTGAAT................... 25 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................................TTCCCCCCCAAGATGCTATCGGAAC.............................. 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................ATCGGAACAAATGTTGAATGC................. 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................GAGCAAACAATAACAACATCTGCAAC.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................CTAGACTCAACAATTAGC........................................................ 18 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................AATGTTGAATGCAATGTAGCCT....... 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................AGCAAACAATAACAACATCT......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................CACAACACCTGAAAATGCT....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................GATGCTATCGGAACAAATGTTGA..................... 23 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................CACCTGAAAATGCTGACTTCTCTGAGC.......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................ATTCCCCCCCAAGATGCTATCGGAAC.............................. 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................CTGAAAATGCTGACTTCTC............................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................CTGCAACTGCAGCTCCTCTAGACT................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................CTATCGGAACAAATGTTGAATGCAAC.............. 26 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................GACTTCTCTGAGCAAACAAT................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................CGCTGAGCAAACAATAACAACATCT......................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................ATTAGCATTCCCCCCCAAGCT......................................... 21 1 1 1.00 1 0 0 0 0 1 0
...................................................................................................................................................................................................ATTCCCCCCCAAGATGCTATC................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................CAGCTCCTCTAGACTCAACAATTAGC........................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTGAATGCGATGTAGCCTTACA... 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................ACACCTGAAAATGCTGACTTCTCTGA............................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CAACCACAACACCTGAAAATGCT....................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................CAAGATGCTATCGGAACAAAT.......................... 21 0 1 1.00 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................TGATTGCAATGTAGCCTTAC.... 20 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................CACAACACCTGAAAATGCTGACTTCTC............................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................TCCCCCCCAAGATGCTATCGG................................. 21 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................ATCGGAACAAATGTTGAATGCAATGT............ 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................GCAAACAATAACAACATCTGC....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................AACTGCAGCTCCTCTAGACT................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................ATAACAACATCTGCAACTGCA................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................................TAACAACATCTGCAACTGCAGCTCC........................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................................................................................................................TGCTATCGGAACAAATGTTGAATGC................. 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................CAAATGTTGAATGCAATGTAGCC........ 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................AATAACAACATCTGCAACTGC................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................CAACATCTGCAACTGCAGCTCCTCTA....................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................AACCACAACACCTGAAAATGCT....................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................ATGTTGAATGCAATGTAGCCT....... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................TCCCCCCCAAGATGCTATCGGAACA............................. 25 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................CAACAATTAGCATTCCCCCC............................................... 20 0 1 1.00 1 0 1 0 0 0 0
....TATAGATCCAGCAACGAAAAA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TCGGAACAAATGTTGAAT................... 18 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................AACAACATCTGCAACTGCA................................................................................ 19 0 2 0.50 1 0 0 0 0 1 0
.....................................................................................................................................................AACAACAACATCTGCAACTGCAGCC............................................................................. 25 2 2 0.50 1 1 0 0 0 0 0
...............................................................................................................ATCACAACACCTGAAAAT.......................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................GACAACACTTGAAAATGCCGAC.................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
....................................ATGAATTGGGCAAGGTCT..................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1
....................................................................................................TATGAACGACAACCACACCAC.................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGTTGAATGCAGTTTAGCC........ 19 2 5 0.20 1 0 0 0 0 0 1
......................................................................................................GACAAGACAACCACAACACCT................................................................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0
.................................................................................................................CGCAACACCTGAAAATGCC....................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
....................................................................................................................AATACCTGGAAATGATGACT................................................................................................................... 20 3 15 0.13 2 2 0 0 0 0 0
...........................................................................................................................GCAAATGCTGACTTATCTC............................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
.........ATCCAGAAACGAAAAAAGA............................................................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTTAATATCTAGGTCGTTGCTTTTTTTTATATAATCTACTAAACCTGTTCCAGACATATAAATATATGTGTGTTTATTCGAATTGTAAATAATAACAAATATAATTTCTGTTGGTGTTGTGGACTTTTACGACTGAAGAGACTCGTTTGTTATTGTTGTAGACGTTGACGTCGAGGAGATCTGAGTTGTTAATCGTAAGGGGGGGTTCTACGATAGCCTTGTTTACAACTTACGTTACATCGGAATGTTTC
********************************************************..((((...((.(((..(((..(((................((((....))))...))).))).))).)).)))).*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V105
male body		 M044
female body
 V039
embryo
.............................................................................................................................................CTCGTTTGTTAATGTTGTAGAAC....................................................................................... 23 3 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................GGAGTTGTGAATCGTAAG.................................................... 18 2 2 0.50 1 0 1 0 0
...................................................................................................................................................................................................................GATAGACTTGTTGACACCTTA................... 21 3 2 0.50 1 0 0 1 0
.......................................................................................................................................................................................................GGGCGGTTCTACAATAACCTT............................... 21 3 2 0.50 1 1 0 0 0
............................................................................................................................................................TGTAGACATCGACGTCAAGGAG......................................................................... 22 3 5 0.20 1 1 0 0 0
......................................................................................................................................................................................GAGTTGTGAATCGTAAGTAG................................................. 20 3 7 0.14 1 0 1 0 0
...................................................................................TGTGAATAATGACAAACATAAT.................................................................................................................................................. 22 3 7 0.14 1 1 0 0 0
.............................................................................TCGAATAGTAAATAACCACAA......................................................................................................................................................... 21 3 8 0.13 1 0 0 0 1
..............................................................................CGAACTGTAAATAACAACAA......................................................................................................................................................... 20 2 8 0.13 1 0 0 0 1
.......................................................................................................ATTGCTGTTGGTGTAGCGGA................................................................................................................................ 20 3 9 0.11 1 1 0 0 0
.....................................................................................................................................................................................................CGGGGGGGATCTACGAGAG................................... 19 3 16 0.06 1 1 0 0 0
........................................................................................................................................................................................................GGAGGTTCTACGATATCTT................................ 19 3 20 0.05 1 0 1 0 0
................................................................................................................................................................................................TCGTTCGGGGGGGTTC........................................... 16 2 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12947:1397446-1397696 - dan_1014 AAATTATAGATCCAGCAACGAAAAAAAATATATTAGATGATTTGGACAAGGTCTGTATATTTAT---------------------A-T---ACACACAAA-------------------------TAAG---------------CT----------------------------------------------------TAA---CATTTA-TTATTGTTTAT------ATTAAAGACAACCACAACACCTGAAAATGCTGACTTCTCT---G---------AGCAAACAATA---------------------------------------ACAAC---ATCTG---CAACTGCAGCTCCTCT-----AGACTCAACAATT---AGCATTCCCCCCCAAGATGC---TATCGGAACAAATGT---TGAATGCAATGTAGCCTTACAAAG
droBip1 scf7180000395031:18611-18868 + AAATTATAGATCCGGCCACGAAAAAGAATATATTAGATGATCTGGACAAGGTCAGTATCTTCAT---------------------A-T---CCCCACAAA--------------------AAACTTCATATTT-----------TT----------------------------------------------------TAA---AATA---TTATTGTTTAC------ATTAAAGACAACCACTAAATCTGAAAATTCAGACTTCTCT---G---------AGCAAACAATA---------------------------------------ACAAC---ATCTG---TAACTGCAGTTCCTCC-----GGACTCGACAATA---GGCATTTCCCTCCAAGATGC---TATTGGGACAAATGT---TGAATGTAATGTAGCCTTACAAAG
droKik1 scf7180000302413:98968-99240 + CCATAATTGATCCAACAACAAAGAAAAATATATTGGAAGATCTTGATAAGGTACGGAGTAAAAAG-------------TTTTT--AT-----TAAAAGCAAGAGTTATAGTTAAAGTTACGAT-CGCATCTAAAAATTTACATATT----------------------------------------------------TGA---AACTAT-TTCTTGTCTAC------TTTACAGTCAAATTCAAACACAGAAAAT---GACTTCTCTAATG------AGCAGCAGACAGC---G------------------------------------GCAAC---GACTG---CGGC---AGTTCTTAC-----TGAAGCTCATATAGCTCGGATTCCTCAGCAAGATGGTGGTGTTGGAATAA-------------------------------
droFic1 scf7180000454040:523283-523531 + AGATTATCGATCCGACAACTAAGAAGAATATATTAGACGATTTCGATAAGGTAAATAAATAAACT-------------ACCTTTTCT-------------------------------------CTTTAATAG-----------AC----------------------------------------------------TAA---TTTTTT-TATATTCTATT------TTTAAAGACAAACTCAAACACGGATAAC---GACTTCGCA---G---------AGCAGGTTACC---------------------------------------AACAC---ATCCG---GAGC---AGTACTCTC-----AGAAGGTCTAATA---CGTACTCCACAGCAGGACAT---CGTTGAAATAAATAA---CTTAAGCAATATACCACTACAAGG
droEle1 scf7180000488370:25729-25812 - GATTTATTAAATTATTAATGAAAAAAAATTTATACAGAGATCCGTATAAAATCTGTATTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----AAAAAATTCAAAA---AAAAGTTT---------------------------------------------------------
droRho1 scf7180000778020:22062-22297 - AGATAATCGATCCGACAACTAAAAAAAATATTTTAGACGATTTAGATAAGGCACGTAATTATAAA-------------TCTTTACAT-------------------------------------TTAAAAAAAA----------TT----------------------------------------------------TAA---CATTTTTTTTTTGTATAA------TTTAAAGGGAAACTCAAATACAGATAAT---GATAACTCG---G---------AACAAGTAA------------------------------------------------------------C---AGTCCTTTC-----AGATGGCCCAATC---CGTGTTCCACAGCAAGATGA---TGTTGGAAATATTAA---TTTAAGCAATATACCATCACAAGG
droBia1 scf7180000301495:904478-904727 - AAATAATCGACCCGGCCACTAAAA-AAATATATTAGACGATTATGATAAGGCAAGTTATT----------------------TACAT-------------------------------------TTCA-GACG-----------AC----------------------------------------------------TAA---CAATTA-TGTTTAAACATTTTAACATTTTAGACAAACTCTAACACAGATAAT---GACTTTTCG---G---------AGCAGGTTACTCTTCC---------------------------------AAACAC---TCCCA---CAGT---TGTCTTGTC-----AGAAGGTCAAATA---CGTATTCCACAGCAAGATAC---TGTTGGAATAAATAA---TTTAAGCAATACAACATCACAAGG
droTak1 scf7180000414551:8407-8663 + AGATAATCGATCCGGCAACTAAGAAAAATATATTAGACGATTTTGATAAGGCAAGTAAATAAATA-------------ACTTAACAT-------------------------------------TTCAAATAATC--------ATT----------------------------------------------------T-A---CAATTT-TGTTTATACAT------TTTAAAGACAAACTCAAACGCAGATAAT---GACTTCCCG---G---------AGCAGGTTAACCTTAC---------------------------------AAACAC---ATCGG---CAGC---AGGCCTTAC-----AGAAGGTCAAATA---CGTATTCCACAGCAAGATAG---TTCTGGAATCAATAA---CTTAAGCAATATAACATCACAAGC
droEug1 scf7180000408984:280077-280332 + CGATAATCGATCCTGCAACTCAAAAAAACATATTAGAAGATTTAGACAAGGCAAGTTATTACAAA-------------GCTTAAGAT-------------------------------------TTCATATCAT----------TT----------------------------------------------------TAC---CATTTA-AACCTTTATAT------TTTAAAGACAAACTTAAACACAGATAAA---GACTTTTCG---G---------AGCAGGCAACACTTAC---------------------------------AAACAC---ATCGG---CAGC---TGTCCTTTC-----AGAAGGTCCTATA---CGTATTCCACAGCAAGATGG---TGTTGCAATCAGTAA---TTTAAGCAATATTATATCACAAGG
dm3 chr4:946432-946686 - AGATAATCGATCCGACGACTAAAAAAAATATTTTAGACGATTTTGATAAGGCAAGTAATACATGC-------------ACTTTATAT-------------------------------------TTCGAGTCA-----------TT----------------------------------------------------TAA---TATTTT-TATTTCTATCT------TTTAAAGACAAAATCAAACACAGACAAT---GAATTTTCC---G---------ATCAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGAAAG---TGTTGGTTTAAATAA---TTTGACCAGTACATCATCACAAGG
droSim2 4:740582-740836 - AGATAATCGATCCGACGACTAAAAAAAATATATTAGACGATTTTGATAAGGCAAGTAATCCATGC-------------ACTTTATAT-------------------------------------TTCAAGTCA-----------TT----------------------------------------------------TAA---TATTTT-TATTTCAATTT------TTTAAAGACAAAATCAAACACAGACAAT---GAATTTTCC---G---------AACAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGATAG---TGTTGGTTTAAATAG---TTTGACCAGTACATCATCACAAGG
droSec2 scaffold_30:648177-648431 - AGATAATTGATCCGACGACTAAAAAAAATATATTAGACGATTTTGATAAGGCAAGTAATCCATGC-------------ACTTAATAT-------------------------------------TTCAAGTCA-----------TT----------------------------------------------------TAA---TATTTT-TATTTCAATTT------TTTAAAGACAAAATCAAACACAGACAAT---GAATTTTCC---G---------AACAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGATAG---TGTTGGTTTAAATAA---TTTGACCAGTACATCATCACAAGG
droYak3 4:1014759-1015002 - AAATAATCGACCCGACGACTAAAAAAAATATATTAGACGATTTTGATAAGGCAAGTAATAAATGT-------------ACTTTATAT-------------------------------------TTCAAGTCA-----------TA----------------------------------------------------TAA---TATTTTCTATTTTAATAT------TTTAAAGACAAAATCAAACACAGACAAT---GACTTTTCC---G---------ATCAGGTAATCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGATAG---TTTTGGTATAAAT---------------ACATCATCACAAGG
droEre2 scaffold_4512:328809-329114 + AGATAATCGATCCGACGACTAAAAAAAATATATTAGACGATTTTGACAAGGCAAGTAATATATGT-------------ATTTTATAT-------------------------------------TTCAAGTCA-----------CT----TAAAATTATTTGTATTATTAATAAATTTACTTTATATTTCAAGTCATTTAAAATTATTTG-TATTTTTTTTT------TTTTAAGACAAAATCAAACACAGACAAT---GACTTTTCC---G---------ATCAGGTAATCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGCCCATTC-----AGAAGGTCAAATA---CGTATTTCACAGCCAGATAG---TTTTGGTATAAATAA---TTTGGTCAGTTCATCATCACAAGG
dp5 Unknown_group_8:39438-39709 + AGATCATCGATCCGGCAACTAAAAAAAATATATTAGACGATTTCGATAAGGCAAGTTATTTATC-----------------------ATTGACCGGCTGG--------------------AACCTTTAAAT------------CTT----------------------------------------------------T-A---CGATAT-TGTTTAAATTTATTGTTATAACAGAGCAACTCGACTGCGGACAAT---GACTTCACA---G---------AGCAAACAGCGTCTTC---------------------------------AGCAACAGTAACAG---CTCCTGACGTTCTGTC-----CGAAACTCCCATT---TGTATTCCAATACAGGATTC---GGTTGGTATAAATAT---TTCCAATAACGTAACACTGCAGGC
droPer2 scaffold_103:23620-23891 + dpe_639 AGATCATCGATCCGGCAACTAAAAAAAATATATTAGACGATTTCGATAAGGCAAGTTATTTATC-----------------------ATTGACCGGCTGG--------------------AACCTTTAAAT------------CTT----------------------------------------------------T-A---CGATAT-TGTTTAAATTTATTGTTATAACAGAGCAACTCGACTGCGGACAAT---GACTTCACA---G---------AGCAAACAGCGTCTTC---------------------------------AGCAACAGTAACAG---CTCCTGACGTTCTGTC-----CGAAACTCCCATT---TGTATTCCAATACAGGATTC---GGTTGGTATAAATAT---TTCCAATAACGTAACACTGCAGGC
droWil2 scf2_1100000004943:716361-716643 + AGATCATTGATCCGGCAACAAAGAAGAATATCCTTGACGATTTGGATAAGGTAGGCTGGCG------------------T-------------------------------------------TTTAAAAC------------TTTGAGGTTGAACCAATTGTATTAATAAG-------TATTGAAATTCAATACACTTAT---TATCTT-TAAATT--TTG------TATACAGACCAATTCAAACGCAGATAGC---GATCTGTCT---G---------ACCCAACACCAGCGCC---------------------------------ACCAGCAGCATCAG---CGAC---TGTGACTACTTTACT--------GGAT---AGCATTCCACAGCCGGAGGC---TACAGGAATAATTGT---TTCTAGCACTGCAGTGGTACA---
droVir3 scaffold_12963:8372246-8372376 - AAATTATAATTCAAGAAACTTGCAACAGTTGAATTAATGTT--GAAT------ACTTTTAATAAAATTTATAAA----TTTAT--A-A---TAAAAAAAA-------------------------AGAA---------------TT----------------------------------------------------TAT---AATTTA-ACAGCATTTGA------A----------------------------------------------------------------------------------------------------------------------------------TTTA-----AGAAACTTCAAAA---TGT------------------------------------------------------------TG
droMoj3 scaffold_6498:1398845-1399134 + AGATTATCGATCCGACAACAAAAAAGAACATACTCGATGAACTGGATAAGGTAAGAAATAATAT---------------------AT----ATTGAGATG--------------------AATATAAAAAT------------CA-------------------------------------------------------A--------A-AAAATTTCATA------CTTACAGAGTAATGTGAGTACGGAGAGT---GACTATCAA---G---------AAGCAGGAGCTGCTGCTGCTACTGCGATTGCACCTGCTGCTCCGTCGTTAACGAC---ATCAGCTGTCGT---CGCGCATCC-----AGATGCCTCAATG---TGCATCACCCAGCCAGATGC---TGGCGGCATCTGTTTACCCCCCAGCAGCGTGTTAATTCAAGG
droGri2 scaffold_15245:547500-547694 + AAGTTTTTCATCAAACGATGAATTCAGGTTTATTGATTGTTG-CGACAATATATACATTTAATTA---------TAAAACATATGAT---------TATA---------------ATT--CATT--------------------TA----------------------------------------------------TAC---CCCAGC-ATACTCTGCAT------TTGAAAGGCACA-AAAAGTACAAAAAAG---AAATTACAA---AACGATATGAGGCAAACTGAA---------------------------------------ACTGC---AACTG---CAACTGCTACTCCTCC-----A-------------------------------------------------------------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AAATTATAGATCCAGCAACGAAAAAAAATATATTAGATGATTTGGACAAGGTCTGTATATTTAT---------------------A-T---ACACACAAA-------------------------TAAG---------------CT----------------------------------------------------TAA---CATTTA-TTATTGTTTAT------ATTAAAGACAACCACAACACCTGAAAATGCTGACTTCTCT---G---------AGCAAACAATA---------------------------------------ACAAC---ATCTG---CAACTGCAGCTCCTCT-----AGACTCAACAATT---AGCATTCCCCCCCAAGATGC---TATCGGAACAAATGT---TGAATGCAATGTAGCCTTACAAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................ACCTGAAAATGCTGACTTCTCT---G---------AGCA....................................................................................................................................................................2712.002000011
....................................................................................................................................................................................................................................................................................................................................................................................................................................GT---TGAATGCAATGTAGCCT.......1912.002110000
.AATTATAGATCCAGCAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...............................ATTAGATGATTTGGACAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................2012.002000020
..........................................................................................................................................................................................................................................................GAAAATGCTGACTTCTCT---G---------AGC.....................................................................................................................................................................2212.002100001
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCCCCAAGATGC---TATCGGAA..................................2512.002100010
...................................................................................................................................................................................................................................................................................................................................................................GCTCCTCT-----AGACTCAACAATT---AGC..............................................................2412.002020000
...................................................................................................................................................................................................................................................................................................................................................................................................................C---TATCGGAACAAATGT---TGAATGCAAT..............2612.002000020
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGC---TATCGGAACAAATGT---T.......................2111.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCCCCAAGATGC---TATCGG....................................2311.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT---TGAATGCAATGTAGCCTT......2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGT---TGAATGCAATGTAGCCTTAC....2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................AGCATTCCCCCCCAAGATG..............................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................AATT---AGCATTCCCCCCCAAGATGC---..........................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCCCCAAGATGC---TATCG.....................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................TGCAGCTCCTCT-----AGACTCAACAATT---AGC..............................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGATGC---TATCGGAACAAAT.............................1911.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGC---TATCGGAACAAATGT---TGAAT...................2511.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCCCCAAGATGC---TATCGGAAC.................................2511.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGAACAAATGT---TGAATGC.................2111.001010000
...............................................................................................................................................................................................................................................................................G---------AGCAAACAATA---------------------------------------ACAAC---ATCTG---CAAC..................................................................................................2611.001010000
.........................................................................................................................................................................................................................................................................................................................................................................CT-----AGACTCAACAATT---AGC..............................................................1811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT---TGAATGCAATGTAGCCT.......2211.001010000
.........................................................................................................................................................................................................................................................................................AGCAAACAATA---------------------------------------ACAAC---ATCT..........................................................................................................2011.001010000
................................................................................................................................................................................................................................................CACAACACCTGAAAATGCT..............................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGC---TATCGGAACAAATGT---TGA.....................2311.001100000
.....................................................................................................................................................................................................................................................CACCTGAAAATGCTGACTTCTCT---G---------AGC.....................................................................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCCCCAAGATGC---TATCGGAAC.................................2611.001010000
........................................................................................................................................................................................................................................................CTGAAAATGCTGACTTCTC......................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................CTG---CAACTGCAGCTCCTCT-----AGACT............................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................C---TATCGGAACAAATGT---TGAATGCAAC..............2611.001010000
...................................................................................................................................................................................................................................................................GACTTCTCT---G---------AGCAAACAAT..............................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCCCCAAGATGC---TATC......................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................CAGCTCCTCT-----AGACTCAACAATT---AGC..............................................................2611.001010000
....................................................................................................................................................................................................................................................ACACCTGAAAATGCTGACTTCTCT---G---------A.......................................................................................................................................................................2611.001010000
............................................................................................................................................................................................................................................CAACCACAACACCTGAAAATGCT..............................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGC---TATCGGAACAAAT.............................2111.001000001
................................................................................................................................................................................................................................................CACAACACCTGAAAATGCTGACTTCTC......................................................................................................................................................................................2711.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCCCCCCCAAGATGC---TATCGG....................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGAACAAATGT---TGAATGCAATGT............2611.001010000
..........................................................................................................................................................................................................................................................................................GCAAACAATA---------------------------------------ACAAC---ATCTG---C.....................................................................................................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................AACTGCAGCTCCTCT-----AGACT............................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................ATA---------------------------------------ACAAC---ATCTG---CAACTGCA..............................................................................................2111.001000001
..................................................................................................................................................................................................................................................................................................TA---------------------------------------ACAAC---ATCTG---CAACTGCAGCTCC.........................................................................................2511.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TATCGGAACAAATGT---TGAATGC.................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGT---TGAATGCAATGTAGCC........2311.001010000
................................................................................................................................................................................................................................................................................................AATA---------------------------------------ACAAC---ATCTG---CAACTGC...............................................................................................2111.001010000
............................................................................................................................................................................................................................................................................................................................................CAAC---ATCTG---CAACTGCAGCTCCTCT-----A................................................................................2611.001100000
.............................................................................................................................................................................................................................................AACCACAACACCTGAAAATGCT..............................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT---TGAATGCAATGTAGCCT.......2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCCCCCCCAAGATGC---TATCGGAACA................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................CAACAATT---AGCATTCCCCCC.....................................................2011.001100000
....TATAGATCCAGCAACGAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAACAAATGT---TGAAT...................1811.001010000
...................................................................................................................................................................................................................................................................................................A---------------------------------------ACAAC---ATCTG---CAACTGCA..............................................................................................1920.501001000
droBip1
AAATTATAGATCCGGCCACGAAAAAGAATATATTAGATGATCTGGACAAGGTCAGTATCTTCAT---------------------A-T---CCCCACAAA--------------------AAACTTCATATTT-----------TT----------------------------------------------------TAA---AATA---TTATTGTTTAC------ATTAAAGACAACCACTAAATCTGAAAATTCAGACTTCTCT---G---------AGCAAACAATA---------------------------------------ACAAC---ATCTG---TAACTGCAGTTCCTCC-----GGACTCGACAATA---GGCATTTCCCTCCAAGATGC---TATTGGGACAAATGT---TGAATGTAATGTAGCCTTACAAAGSizeHit CountTotal NormTotal
No Reads
droKik1
CCATAATTGATCCAACAACAAAGAAAAATATATTGGAAGATCTTGATAAGGTACGGAGTAAAAAG-------------TTTTT--AT-----TAAAAGCAAGAGTTATAGTTAAAGTTACGAT-CGCATCTAAAAATTTACATATT----------------------------------------------------TGA---AACTAT-TTCTTGTCTAC------TTTACAGTCAAATTCAAACACAGAAAAT---GACTTCTCTAATG------AGCAGCAGACAGC---G------------------------------------GCAAC---GACTG---CGGC---AGTTCTTAC-----TGAAGCTCATATAGCTCGGATTCCTCAGCAAGATGGTGGTGTTGGAATAA-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGATTATCGATCCGACAACTAAGAAGAATATATTAGACGATTTCGATAAGGTAAATAAATAAACT-------------ACCTTTTCT-------------------------------------CTTTAATAG-----------AC----------------------------------------------------TAA---TTTTTT-TATATTCTATT------TTTAAAGACAAACTCAAACACGGATAAC---GACTTCGCA---G---------AGCAGGTTACC---------------------------------------AACAC---ATCCG---GAGC---AGTACTCTC-----AGAAGGTCTAATA---CGTACTCCACAGCAGGACAT---CGTTGAAATAAATAA---CTTAAGCAATATACCACTACAAGGSizeHit CountTotal NormTotal
No Reads
droEle1
GATTTATTAAATTATTAATGAAAAAAAATTTATACAGAGATCCGTATAAAATCTGTATTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----AAAAAATTCAAAA---AAAAGTTT---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGATAATCGATCCGACAACTAAAAAAAATATTTTAGACGATTTAGATAAGGCACGTAATTATAAA-------------TCTTTACAT-------------------------------------TTAAAAAAAA----------TT----------------------------------------------------TAA---CATTTTTTTTTTGTATAA------TTTAAAGGGAAACTCAAATACAGATAAT---GATAACTCG---G---------AACAAGTAA------------------------------------------------------------C---AGTCCTTTC-----AGATGGCCCAATC---CGTGTTCCACAGCAAGATGA---TGTTGGAAATATTAA---TTTAAGCAATATACCATCACAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
AAATAATCGACCCGGCCACTAAAA-AAATATATTAGACGATTATGATAAGGCAAGTTATT----------------------TACAT-------------------------------------TTCA-GACG-----------AC----------------------------------------------------TAA---CAATTA-TGTTTAAACATTTTAACATTTTAGACAAACTCTAACACAGATAAT---GACTTTTCG---G---------AGCAGGTTACTCTTCC---------------------------------AAACAC---TCCCA---CAGT---TGTCTTGTC-----AGAAGGTCAAATA---CGTATTCCACAGCAAGATAC---TGTTGGAATAAATAA---TTTAAGCAATACAACATCACAAGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGATAATCGATCCGGCAACTAAGAAAAATATATTAGACGATTTTGATAAGGCAAGTAAATAAATA-------------ACTTAACAT-------------------------------------TTCAAATAATC--------ATT----------------------------------------------------T-A---CAATTT-TGTTTATACAT------TTTAAAGACAAACTCAAACGCAGATAAT---GACTTCCCG---G---------AGCAGGTTAACCTTAC---------------------------------AAACAC---ATCGG---CAGC---AGGCCTTAC-----AGAAGGTCAAATA---CGTATTCCACAGCAAGATAG---TTCTGGAATCAATAA---CTTAAGCAATATAACATCACAAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CGATAATCGATCCTGCAACTCAAAAAAACATATTAGAAGATTTAGACAAGGCAAGTTATTACAAA-------------GCTTAAGAT-------------------------------------TTCATATCAT----------TT----------------------------------------------------TAC---CATTTA-AACCTTTATAT------TTTAAAGACAAACTTAAACACAGATAAA---GACTTTTCG---G---------AGCAGGCAACACTTAC---------------------------------AAACAC---ATCGG---CAGC---TGTCCTTTC-----AGAAGGTCCTATA---CGTATTCCACAGCAAGATGG---TGTTGCAATCAGTAA---TTTAAGCAATATTATATCACAAGGSizeHit CountTotal NormTotal
No Reads
dm3
AGATAATCGATCCGACGACTAAAAAAAATATTTTAGACGATTTTGATAAGGCAAGTAATACATGC-------------ACTTTATAT-------------------------------------TTCGAGTCA-----------TT----------------------------------------------------TAA---TATTTT-TATTTCTATCT------TTTAAAGACAAAATCAAACACAGACAAT---GAATTTTCC---G---------ATCAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGAAAG---TGTTGGTTTAAATAA---TTTGACCAGTACATCATCACAAGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCAAGAAAG---TGTTGGT...................................21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011
...........................................................................................................................................................................................................................................................ACAAT---GAATTTTCC---G---------ATCAGGTAACCTC...........................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGAAAG---TGTTGGTTTAAATAA---TTTG....................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................C---ACCAG---CAAC---TGTCCTTTC-----.................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AAT---GAATTTTCC---G---------ATCAGGTAACCTCC..........................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GGTAACCTCCAC---------------------------------AAACAC---ACC...........................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAG---TGTTGGTTTAAAT.............................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTCCAATA---CGTATTCC.........................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TCC---G---------ATCAGGTAACCTCCAC---------------------------------AAACAC---..............................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TC-----AGAAGGTCCAATA---CGTATTCCAC.......................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAGACAAT---GAATTTTCC---G---------ATCAGG..................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTCCAATA---CGTAT............................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCC..........................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAAAG---TGTTGGTTTAAAT.............................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GTCCTTTC-----AGAAGGTCCA.......................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AAACACAGACAAT---GAATTTTC......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGAAAG---TGTTG.....................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AAAG---TGTTGGTTTAAATAA---TTTGA...................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CTTTC-----AGAAGGTCCAATA---CGTATT...........................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGT............................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TTTC-----AGAAGGTCCAATA---CGTATT...........................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGAAAG---TGTTGGTTT.................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................AGACAAT---GAATTTTCC---G---------ATCAGGT.................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GACAAT---GAATTTTCC---G---------ATCAGGTAACCTC...........................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGAAAG---TGTTGG....................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CAC---------------------------------AAACAC---ACCAG---CAAC---TGTC...........................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTTCC---G---------ATCAGGTAACCTCCAC---------------------------------A......................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CAAAATCAAACACAGACAAT---GAAT..........................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---...............................................................................................2512.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTCC---G---------ATCAGGTAACCTCCAC---------------------------------AAACAC---A.............................................................................................................2812.0020000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAAAG---TGTTGGTTTAA...............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GTCCTTTC-----AGAAGGTCCAATC---.................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CTTTC-----AGAAGGTCCAATA---CGTATTC..........................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGATAATCGATCCGACGACTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................T---GAATTTTCC---G---------ATCAGGT.................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AAACACAGACAAT---GAATTTTCC---G---------ATC.....................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AATA---CGTATTCCACAGCAAGAAAG---T.........................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCCACAGCAAGAAAG---TGTTGGTT..................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AG---TGTTGGTTTAAATAA---TTGA....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ATTTTCC---G---------ATCAGGTAACCTCC..........................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TTTTCC---G---------ATCAGGTAACCT............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGTATTCCACAGCAAGAAA..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---C.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TGTCCTTTC-----AGAAGGTCCAATA---CGT..............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.....................................CGATTTTGATAAGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CAAT---GAATTTTCC---G---------ATCAGG..................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CTTTATAT-------------------------------------TTCGAGTCA-----------TT----------------------------------------------------...........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTCCAATA---CGTATTCCACA......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AACACAGACAAT---GAATTTTCC---G---------ATC.....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AGGTCCAATA---CGTATTCCACA......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGTATTCCACAGCAAGAAAG---T.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTC-----AGAAGGTCCAATA---CGTATT...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAA---TTTGACCAGTACATCA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCAAGAAAG---TGTT......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCTTTC-----AGAAGGTCCAAT.....................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CACAGACAAT---GAATTTTCC---G---------ATCAGG..................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
AGATAATCGATCCGACGACTAAAAAAAATATATTAGACGATTTTGATAAGGCAAGTAATCCATGC-------------ACTTTATAT-------------------------------------TTCAAGTCA-----------TT----------------------------------------------------TAA---TATTTT-TATTTCAATTT------TTTAAAGACAAAATCAAACACAGACAAT---GAATTTTCC---G---------AACAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGATAG---TGTTGGTTTAAATAG---TTTGACCAGTACATCATCACAAGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................TCAAACACAGACAAT---GAATTTTCC---G---------AAC.....................................................................................................................................................................2812.00200000000110000000
.................................................................................................................................................................................................................................................TCAAACACAGACAAT---GAATTTTCC---G---------A.......................................................................................................................................................................2612.00200000000200000000
.GATAATCGATCCGACGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
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............................................................................................................................................................................................................................................................CAAT---GAATTTTCC---G---------AACAGGTAACCTC...........................................................................................................................................................2711.00100000000100000000
..................................................................................................................................................................................................................................................CAAACACAGACAAT---GAATT.........................................................................................................................................................................................1911.00100000001000000000
.........................................................................................................................................................................................................................................AGACAAAATCAAACACAGACAAT---GAA...........................................................................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................TTTC-----AGAAGGTCCAATA---CGTATTCCAC.......................................................2711.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAATAG---TTTGACCAGTACATC.........2411.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TTTC-----AGAAGGTCCAATA---CGT..............................................................2011.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAG---TTTGACCAGTACAT..........2111.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATAG---TGTTGGT...................................1711.00100000010000000000
...................................................................................................................................................................................................................................................AAACACAGACAAT---GAATTTTCC---G---------AACA....................................................................................................................................................................2711.00101000000000000000
...............................................................................................................................................................................................................................................AATCAAACACAGACAAT---GAAT..........................................................................................................................................................................................2111.00100010000000000000
...................................................................................................................................................................................................................................................AAACACAGACAAT---GA............................................................................................................................................................................................1511.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGATAG---TGTTGGTTTAAAT.............................2011.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGATAG---TGTTGGT...................................2411.00100010000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................A---CGTATTCCACAGCAAG.................................................1711.00100000000001000000
.....................................................................................................................................................................................................................................................................ATTTTCC---G---------AACAGGTAACCT............................................................................................................................................................2011.00101000000000000000
...........................................................................................................................................................................................................................................ACAAAATCAAACACAGACAAT---GAATT.........................................................................................................................................................................................2611.00100000000010000000
...................................................................................................................................................................................................................................................................................................CTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGT............................................................................................2411.00100000000000100000
...................................................................................................................................................................................................................................................................................................CTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGG............................................................................................2411.00100100000000000000
AGATAATCGATCCGACGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGTACATCATCACAAG.2011.00101000000000000000
droSec2
AGATAATTGATCCGACGACTAAAAAAAATATATTAGACGATTTTGATAAGGCAAGTAATCCATGC-------------ACTTAATAT-------------------------------------TTCAAGTCA-----------TT----------------------------------------------------TAA---TATTTT-TATTTCAATTT------TTTAAAGACAAAATCAAACACAGACAAT---GAATTTTCC---G---------AACAGGTAACCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGATAG---TGTTGGTTTAAATAA---TTTGACCAGTACATCATCACAAGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
AGATAATTGATCCGACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
..................................................................................................................................................................................................................................................................................................CCTCCAC---------------------------------AAACAC---ACCAG---CAAC---...............................................................................................2211.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGATAG---TGTTGGT...................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCACAGCAAGATAG---TGTTGGT...................................2611.0010010
.......................................................................................................................................................................................................................................................................................................................................................................TTTC-----AGAAGGTCCAATA---CGTATTCCAC.......................................................2711.0010010
..ATAATTGATCCGACGACTAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
....AATTGATCCGACGACTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......................................................................................................................................................................................................................................................................................................................................................G---CAAC---TGTCCTTTC-----AGAAGGT..........................................................................2111.0010010
..................................................................................................................................................................................................................................................CAAACACAGACAAT---GAATTTTCC---..................................................................................................................................................................................2311.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGATAG---TGTTG.....................................2211.0010010
............................................................................................................................................................................................................................................................................................................................................ACAC---ACCAG---CAAC---TGTCCT.........................................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................AAACAC---ACCAG---CAAC---TGTC...........................................................................................1911.0010010
..ATAATTGATCCGACGACTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............................ATATTAGACGATTTTGATA.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................GATAG---TGTTGGTTTAAATAA---........................2011.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGATAG---TGTTGGT...................................2411.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCAAGATAG---TGTTGG....................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................TTC-----AGAAGGTCCAATA---CGT..............................................................1911.0010010
droYak3
AAATAATCGACCCGACGACTAAAAAAAATATATTAGACGATTTTGATAAGGCAAGTAATAAATGT-------------ACTTTATAT-------------------------------------TTCAAGTCA-----------TA----------------------------------------------------TAA---TATTTTCTATTTTAATAT------TTTAAAGACAAAATCAAACACAGACAAT---GACTTTTCC---G---------ATCAGGTAATCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGGTCCAATA---CGTATTCCACAGCAAGATAG---TTTTGGTATAAAT---------------ACATCATCACAAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................GACTTTTCC---G---------ATCAGGTAATCT............................................................................................................................................................2212.00201000100000
..................................................................................................................................................................................................................................................CAAACACAGACAAT---GACTT.........................................................................................................................................................................................1912.00202000000000
..............................................................................................................................................................................................................................................................AT---GACTTTTCC---G---------ATCAGGTA................................................................................................................................................................2011.00100100000000
..........................................................................................................................................................................................................................................................................................................................................AAACAC---ACCAG---CAAC---TGTCC..........................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................GTCCTTTC-----AGAAGGTCCAATA---CGT..............................................................2411.00100000010000
...............................................................................................................................................................................................................................................AATCAAACACAGACAAT---GACTT.........................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................................................AC---ACCAG---CAAC---TGTCCTTTC-----AGAAG............................................................................2511.00100100000000
AAATAATCGACCCGACGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
....................................................................................................................................................................................................................................................................ACTTTTCC---G---------ATCAGGTAATC.............................................................................................................................................................2011.00110000000000
................................................................................................................................................................................................................................................ATCAAACACAGACAAT---GACTT.........................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................CCAC---------------------------------AAACAC---ACCAG---CAAC---T..............................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CCAATA---CGTATTCCACAGC....................................................1911.00100100000000
..............................................................................................................................................................................................................................................................AT---GACTTTTCC---G---------ATCAGGTAATCTCC..........................................................................................................................................................2611.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................TTTC-----AGAAGGTCCAATA---CGT..............................................................2011.00100000010000
...........................................................................................................................................................................................................................................................................C---G---------ATCAGGTAATCTCCAC---------------------------------A......................................................................................................................1911.00101000000000
.....................................................................................................................................................................................................................................................................................................CCAC---------------------------------AAACAC---ACCAG---CAAC---...............................................................................................1911.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATA---CGTATTCCACAGCAAGATAG---TTTTG.....................................2811.00101000000000
................................................................................................................................................................................................................................................ATCAAACACAGACAAT---GACTTTT.......................................................................................................................................................................................2311.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................TATTCCACAGCAAGATAG---TTTT......................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................CAC---ACCAG---CAAC---TGTCCTTTC-----AGAAGG...........................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................AAT---GACTTTTCC---G---------ATCAGGT.................................................................................................................................................................2011.00100100000000
.....................................................................................................................................................................................................................................................ACACAGACAAT---GACTTTTCC---..................................................................................................................................................................................2011.00100100000000
droEre2
AGATAATCGATCCGACGACTAAAAAAAATATATTAGACGATTTTGACAAGGCAAGTAATATATGT-------------ATTTTATAT-------------------------------------TTCAAGTCA-----------CT----TAAAATTATTTGTATTATTAATAAATTTACTTTATATTTCAAGTCATTTAAAATTATTTG-TATTTTTTTTT------TTTTAAGACAAAATCAAACACAGACAAT---GACTTTTCC---G---------ATCAGGTAATCTCCAC---------------------------------AAACAC---ACCAG---CAAC---TGCCCATTC-----AGAAGGTCAAATA---CGTATTTCACAGCCAGATAG---TTTTGGTATAAATAA---TTTGGTCAGTTCATCATCACAAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................CAAC---TGCCCATTC-----AGAAGGT..........................................................................2012.0020101000
...TAATCGATCCGACGACTAAAAAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..........................................................................................................................................................................................................................................................GACAAT---GACTTTTCC---G---------ATCAGGT.................................................................................................................................................................2311.0010001000
..................................................................................................................................................................................................................................................CAAACACAGACAAT---GACTTTTCC---..................................................................................................................................................................................2311.0011000000
.......................................................................................................................................................................................................................................................................................................................................................G---CAAC---TGCCCATTC-----AGAAGGT..........................................................................2111.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATAG---TTTTGGTATAAAT.............................1811.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAA---TTTGGTCAGTTCAT..........2011.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AA---TTTGGTCAGTTCATCATC......2011.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCAGTTCATCATCACA...2111.0011000000
............................................................................................................................................................................................................................................................................................................................................ACAC---ACCAG---CAAC---TGCCCATTC-----AGA..............................................................................2511.0011000000
.GATAATCGATCCGACGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCACAGCCAGATAG---TTTTGGC...................................2611.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA---TTTGGTCAGTTCATC.........2011.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................CAAATA---CGTATTTCACAGCCA..................................................2111.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTATAAATAA---TTTGGTCA................1911.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---TTTGGTCAGTTCATCAT.......2011.0010000100
................................................................................................................................................................................................................................................ATCAAACACAGACAAT---GACT..........................................................................................................................................................................................2011.0010001000
...................................................................................................................................................................................................................................................................GACTTTTCC---G---------ATCAGGTAATCT............................................................................................................................................................2211.0010000010
.........................................................................................................................................................................................................................................................AGACAAT---GACTTTTCC---G---------ATCAG...................................................................................................................................................................2211.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAA---TTTGGTCAGTTCATC.........2211.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................CAAATA---CGTATTTCACAGCCAGAC...............................................2411.0010100000
..................................................................................................................................................................................................................................................CAAACACAGACAAT---GACTTTTCC---G---------........................................................................................................................................................................2411.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................GGTCAAATA---CGTATTTCACAGCCAGAT...............................................2711.0011000000
................................................................................................................................................................................................................................................ATCAAACACAGACAAT---GACTTTTCC---..................................................................................................................................................................................2511.0010100000
...................................................................................................................................................................................................................................................................GACTTTTCC---G---------ATCAGGTAAT..............................................................................................................................................................2011.0010000010
dp5
AGATCATCGATCCGGCAACTAAAAAAAATATATTAGACGATTTCGATAAGGCAAGTTATTTATC-----------------------ATTGACCGGCTGG--------------------AACCTTTAAAT------------CTT----------------------------------------------------T-A---CGATAT-TGTTTAAATTTATTGTTATAACAGAGCAACTCGACTGCGGACAAT---GACTTCACA---G---------AGCAAACAGCGTCTTC---------------------------------AGCAACAGTAACAG---CTCCTGACGTTCTGTC-----CGAAACTCCCATT---TGTATTCCAATACAGGATTC---GGTTGGTATAAATAT---TTCCAATAACGTAACACTGCAGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................GCAACAGTAACAG---CTCCTGAC..............................................................................................2112.0020200000000
...................................................................................................................................................................................................................................................................................................................................................AACAG---CTCCTGACGTTCTGTC-----.................................................................................2112.0020100010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATAACGTAACACTGCAGG.2212.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGATTC---GGTTGGT...................................1812.0020000200000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAATACAGGATTC---GGTTG.....................................2212.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................CCAATACAGGATTC---GGTTG.....................................1912.0020100001000
..........................................................................................................................................................................................................................................GAGCAACTCGACTGCGGACAAT---GACTT.........................................................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................................CTCGACTGCGGACAAT---GACTTC........................................................................................................................................................................................2211.0010000001000
....................................................................................................................................................................................................................................................ACTGCGGACAAT---GACTTC........................................................................................................................................................................................1811.0010001000000
..................................................................................................................................................................................................................................................CGACTGCGGACAAT---GACTT.........................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................GTTCTGTC-----CGAAACTCCCATT---.................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATTC---GGTTGGTAG.................................1811.0010000100000
............................................................................................................................................................................................................................................................................................................................................CAACAGTAACAG---CTCCTGACGTTCT.........................................................................................2511.0010100000000
............................................................................................................................................................................................................................................................................................AAACAGCGTCTTC---------------------------------AGCAACA................................................................................................................2011.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACGTAACACTGCAGG.2011.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGATTC---GGTTGGTATAA...............................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATAACGTAACACTGCAGG.2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................GACGTTCTGTC-----CGAAACTCCCATT---TGT..............................................................2711.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................GTTCTGTC-----CGAAACTCCCATT---TGTATC...........................................................2711.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................AAACTCCCATT---TGTATTCCAAT......................................................2211.0010010000000
..............................................................................................................................................................................................................................................AACTCGACTGCGGACAAT---GACTTCACA---G---------........................................................................................................................................................................2811.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCAATACAGGATTC---GGTT......................................2311.0010100000000
....CATCGATCCGGCAACTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
.........................................................................................................................................................................................................................................................................................AGCAAACAGCGTCTTC---------------------------------AGCAACAG...............................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................GCAACAGTAACAG---CTCCTGACGTTCC.........................................................................................2611.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................CAG---CTCCTGACGTTCTGTC-----CG...............................................................................2111.0010001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTCCAATAACGTAACACTGCAGG.2411.0010100000000
...........................................................................................................................................................................................................................................AGCAACTCGACTGCGGACAAT---GAC...........................................................................................................................................................................................2411.0010000000001
............................................................................................................................................................................................................................................................................................................................................CAACAGTAACAG---CTCCTGACGTT...........................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................GTAACAG---CTCCTGACGTTCT.........................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................TCTGTC-----CGAAACTCCCAT.....................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................TGTATTCCAATACAGGATTC---GGTTG.....................................2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................ACAG---CTCCTGACGTTCTGTC-----C................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATTC---GGTTGGTATAAATAT---TTCC....................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................CAG---CTCCTGACGTTCTGTC-----C................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................GTAACAG---CTCCTGACGTTC..........................................................................................1911.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCAATACAGGATTC---GGTTGGT...................................2611.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TACAGGATTC---GGTTGGTATA................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................GCAACAGTAACAG---CTCCTGA...............................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................AATACAGGATTC---GGTTGGTATAAAT.............................2511.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................G---CTCCTGACGTTCTGTC-----CG...............................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................CGAAACTCCCATT---TGTATTCCAATACAG..................................................2811.0010100000000
.........................................................................................................................................................................................................................................AGAGCAACTCGACTGCGGACA...................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................TGTC-----CGAAACTCCCATT---TGT..............................................................2011.0010100000000
droPer2
AGATCATCGATCCGGCAACTAAAAAAAATATATTAGACGATTTCGATAAGGCAAGTTATTTATC-----------------------ATTGACCGGCTGG--------------------AACCTTTAAAT------------CTT----------------------------------------------------T-A---CGATAT-TGTTTAAATTTATTGTTATAACAGAGCAACTCGACTGCGGACAAT---GACTTCACA---G---------AGCAAACAGCGTCTTC---------------------------------AGCAACAGTAACAG---CTCCTGACGTTCTGTC-----CGAAACTCCCATT---TGTATTCCAATACAGGATTC---GGTTGGTATAAATAT---TTCCAATAACGTAACACTGCAGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................GGACAAT---GACTTCACA---G---------AGC.....................................................................................................................................................................2016.006600000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGATTC---GGTTGGT...................................1815.005005000
...............................ATTAGACGATTTCGATAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
...............................................................................................................................................................................................................................................ACTCGACTGCGGACAAT---GACTTCACA---G---------........................................................................................................................................................................2712.002200000
............................................................................................................................................................................................................................................................CAAT---GACTTCACA---G---------AGCAAACAGCGT............................................................................................................................................................2612.002110000
...................................................................................................................................................................................................................................................................................................................................................AACAG---CTCCTGACGTTCTGT.......................................................................................2012.002200000
.....ATCGATCCGGCAACTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.............................................................................................................................................................................................................................................CAACTCGACTGCGGACAAT---GACT..........................................................................................................................................................................................2312.002200000
.........................................................................................................................................................................................................................................................GGACAAT---GACTTCACA---G---------AGCAAACAGCGT............................................................................................................................................................2912.002200000
..............................................................................................................................................................................................................................................AACTCGACTGCGGACAAT---GACTT.........................................................................................................................................................................................2312.002200000
...........................................................................................................................................................................................................................................................ACAAT---GACTTCACA---G---------AGC.....................................................................................................................................................................1812.002200000
..............................................................................................................................................................................................................................................AACTCGACTGCGGACAAT---GACTTCACA---G---------........................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................AACTCGACTGCGGACAAT---GACTTCACA---G---------G.......................................................................................................................................................................2911.001100000
.............................................................................................................................................................................................................................................................AAT---GACTTCACA---G---------AGCAAACAGCGT............................................................................................................................................................2511.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTAACACTGCAGG.1911.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATACAGGATTC---GGTTGGT...................................2311.001001000
...................................................................................................................................................................................................................................................................................................................................................AACAG---CTCCTGACGTTCTGG.......................................................................................2011.001100000
.................................................................................................................................................................................................................................................TCGACTGCGGACAAT---GACTTCACA---G---------........................................................................................................................................................................2511.001000001
..................................................................................................................................................................................................................................................CGACTGCGGACAAT---GACT..........................................................................................................................................................................................1811.001100000
..............................................................................................................................................................................................................................................AACTCGACTGCGGACAAT---G.............................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................AGTAACAG---CTCCTGACGT............................................................................................1811.001000010
...............................................................................................................................................................................................................................................................................G---------AGCAAACAGCGTCTTC---------------------------------AGCA...................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TTCCAATAACGTAACACTGCAGG.2511.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGTAACACTGCAGG.1811.001100000
..............................................................................................................................................................................................................................................AACTCGACTGCGGACAAT---GACTTCACA---..................................................................................................................................................................................2711.001100000
....................................................................................................................................................................................................................................................ACTGCGGACAAT---GACTTCAC......................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................GACGTTCTGTC-----CGAAACTCCC.......................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................TGTATTCCAATACAGGATTC---GGTT......................................2411.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATACAGGATTC---GGTTG.....................................2111.001001000
...............................................................................................................................................................................................................................................................................................................................................................TGACGTTCTGTC-----CGAAACTCCC.......................................................................2211.001010000
.............................................................................................................................................................................................................................................................................................................................................AACAGTAACAG---CTCCTGACGTTCT.........................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................AGTAACAG---CTCCTGACGTTCTGTC-----CGA..............................................................................2711.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAATACAGGATTC---GGTTGGT...................................2411.001001000
.................................TAGACGATTTCGATAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2050.201001000
droWil2
AGATCATTGATCCGGCAACAAAGAAGAATATCCTTGACGATTTGGATAAGGTAGGCTGGCG------------------T-------------------------------------------TTTAAAAC------------TTTGAGGTTGAACCAATTGTATTAATAAG-------TATTGAAATTCAATACACTTAT---TATCTT-TAAATT--TTG------TATACAGACCAATTCAAACGCAGATAGC---GATCTGTCT---G---------ACCCAACACCAGCGCC---------------------------------ACCAGCAGCATCAG---CGAC---TGTGACTACTTTACT--------GGAT---AGCATTCCACAGCCGGAGGC---TACAGGAATAATTGT---TTCTAGCACTGCAGTGGTACA---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................GACTACTTTACT--------GGAT---AGC..............................................................1914.00400040
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCCGGAGGC---TACAGGA...................................2413.00300030
...........................................................................................................................................................................................................................................................................................................................................................................................AT---AGCATTCCACAGCCGGAGGC---..........................................2213.00300030
......................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCCGGAGGC---TACAGGA...................................2113.00301020
.............................................................................................................................................................................................................................................................................................................................................AGCAGCATCAG---CGAC---TGTGACT........................................................................................2212.00220000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGT---TTCTAGCACTGCAGTGGT......2612.00200020
.....................................................................................................................................................................................................................................................................................................................................................CAG---CGAC---TGTGACTACTTTACT--------GG......................................................................2412.00200020
...........................................................................................................................................................................................................................................................ATAGC---GATCTGTCT---G---------ACCCAACACC..............................................................................................................................................................2512.00210010
....CATTGATCCGGCAACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
..........................................................................................................................................................................................................................................................GATAGC---GATCTGTCT---G---------ACC.....................................................................................................................................................................1911.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT---TTCTAGCACTGCAGTGG.......2111.00100010
................................................................................................................................................................................................................................................................................................................................................AGCATCAG---CGAC---TGTGACTACTTT...................................................................................2411.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGT---TTCTAGCACTGCAGTGGT......2411.00100010
............................................................................................................................................................................................................................................................................................................................................................................................T---AGCATTCCACAGCCGGAGGC---T.........................................2211.00100100
.................................................................................................................................................................................................................................................................................................CCAGCGCC---------------------------------ACCAGCAGCATCAG---CGAC---T..............................................................................................2711.00100010
....................AAGAAGAATATCCTTGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..........................AATATCCTTGACGATTTGGATAAGACC............................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.......................................................................................................................................................................................................................................................................TGTCT---G---------ACCCAACACCAGCGCC---------------------------------ACCAGC.................................................................................................................2811.00101000
............................................................................................................................................................................................................................................................................................CAACACCAGCGCC---------------------------------ACCAGCAGC..............................................................................................................2211.00100010
....CATTGATCCGGCAACAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
............................................................................................................................................................................................................................................................................................................................................................GAC---TGTGACTACTTTACT--------GGAT---AGCATT...........................................................2811.00100100
......................................................................................................................................................................................................................................................................CTGTCT---G---------ACCCAACACCAGCGCC---------------------------------ACC....................................................................................................................2611.00100010
................AACAAAGAAGAATATCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...................................................................................................................................................................................................................................................................................................................................................................GTGACTACTTTACT--------GGAT---AGC..............................................................2111.00100010
......TTGATCCGGCAACAAAGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................AGCATTCCACAGCCGGAGGC---T.........................................2111.00100100
....................AAGAAGAATATCCTTGACGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.GATCATTGATCCGGCAACAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
AGATCATTGATCCGGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................................................................................................................................................................................................................................................................................................ACT--------GGAT---AGCATTCCACAGCCGGAGGC---..........................................2711.00100010
........................................................................................................................................................................................................................................................................................................C---------------------------------ACCAGCAGCATCAG---CGAC---T..............................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................CGCC---------------------------------ACCAGCAGCATCAG---CGAC---T..............................................................................................2311.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGT---TTCTAGCACTGCAGTGG.......2211.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................CATTCCACAGCCGGAGGC---TACAGGA...................................2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................................GACTACTTTACT--------GGAT---AGCAT............................................................2111.00100010
...................................................................................................................................................................................................................................................................................................................................................ATCAG---CGAC---TGTGACTACTTTACT--------........................................................................2411.00100010
.....ATTGATCCGGCAACAAAGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGT---TTCTAGCACTGCAGT.........2111.00100100
....CATTGATCCGGCAACAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAGCCGGAGGC---TACAGG....................................2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGGAGGC---TACAGGAATAATTGT---........................2611.00100010
..........................................................................................................................................................................................................................................................................................................................................................................CTTTACT--------GGAT---AGCATTCC.........................................................1911.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT---TTCTAGCACTGCAG..........1811.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................GAT---AGCATTCCACAGCCGG.................................................1911.00100010
..........................................................................................................................................................................................................................................................GATAGC---GATCTGTCT---G---------ACCCAAC.................................................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................ACCAGCAGCATCAG---CGAC---TGTGACT........................................................................................2511.00110000
.............GGCAACAAAGAAGAATATCCTTGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...................................................................................................................................................................................................................................................................................................................................................ATCAG---CGAC---TGTGACTACTTTACT--------G.......................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................GT---TTCTAGCACTGCAGTGG.......1911.00100010
.............................................................................................................................................................................................................................................................................................................................................AGCAGCATCAG---CGAC---TGTGACG........................................................................................2211.00110000
.....................................................................................................................................................................................................................................................................................................................................................................GACTACTTTACT--------GGAT---AGCA.............................................................2011.00100010
....CATTGATCCGGCAACAAAGAAGAATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.........................................................................................................................................................................................................................................................................................ACCCAACACCAGCGCC---------------------------------ACC....................................................................................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................AT---AGCATTCCACAGCCGGA................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCCGGAGGC---TACAGG....................................2011.00100001
......................................................................................................................................................................................................................................................................CTGTCT---G---------ACCCAACACCAGC...........................................................................................................................................................2011.00110000
................................CTTGACGATTTGGATAAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2021.00220000
.......TGATCCGGCAACAAAGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAATAATTGT---TTCTAGCACTGC............2611.00100010
.....................................................................................................................................................................................................................................................................................................................................................................GACTACTTTACT--------GGAT---AGCATT...........................................................2211.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................AT---AGCATTCCACAGCCGGAG...............................................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................CATTCCACAGCCGGAGGC---TACAGG....................................2411.00100010
.........................GAATATCCTTGACGATTT......................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................AT---AGCATTCCACAGCCGGG................................................1911.00100010
..ATCATTGATCCGGCAACAAAGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................GCATTCCACAGCCGGAGGC---TACAGGA...................................2611.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGT---TTCTAGCACTGCAGTG........2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................GTGACTACTTTACT--------GGAT---AGCATT...........................................................2411.00100010
droVir3
AAATTATAATTCAAGAAACTTGCAACAGTTGAATTAATGTT--GAAT------ACTTTTAATAAAATTTATAAA----TTTAT--A-A---TAAAAAAAA-------------------------AGAA---------------TT----------------------------------------------------TAT---AATTTA-ACAGCATTTGA------A----------------------------------------------------------------------------------------------------------------------------------TTTA-----AGAAACTTCAAAA---TGT------------------------------------------------------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AGATTATCGATCCGACAACAAAAAAGAACATACTCGATGAACTGGATAAGGTAAGAAATAATAT---------------------AT----ATTGAGATG--------------------AATATAAAAAT------------CA-------------------------------------------------------A--------A-AAAATTTCATA------CTTACAGAGTAATGTGAGTACGGAGAGT---GACTATCAA---G---------AAGCAGGAGCTGCTGCTGCTACTGCGATTGCACCTGCTGCTCCGTCGTTAACGAC---ATCAGCTGTCGT---CGCGCATCC-----AGATGCCTCAATG---TGCATCACCCAGCCAGATGC---TGGCGGCATCTGTTTACCCCCCAGCAGCGTGTTAATTCAAGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................CGTTAACGAC---ATCAGCTGTCGT---C..............................................................................................2312.002200000
..........................AACATACTCGATGAACTGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................AGGAGCTGCTGCTGCTACTGC...............................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................CTATCAA---G---------AAGCAGGAGCTGCT..........................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................ATG---TGCATCACCCAGCCAG.................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTCGT---CGCGCATCC-----AGATGCCT.........................................................................2911.001000001
................................................................................................................................................................................................................................................................................................AGCTGCTGCTGCTACTGCGATTG..........................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................ATGTGAGTACGGAGAGT---GACT..........................................................................................................................................................................................2111.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................CATCACCCAGCCAGATGC---TGGCGGC...................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................AGCTGTCGT---CGCGCATCC-----AGATGCCTC........................................................................2711.001010000
.................................................................................................................................................................................................................................................GTGAGTACGGAGAGT---GACT..........................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................CGAC---ATCAGCTGTCGT---CGCGC..........................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................ATTGCACCTGCTGCTCCGT...........................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................GAC---ATCAGCTGTCGT---CGCGC..........................................................................................2011.001000100
..............................................................................................................................................................................................................................................................GT---GACTATCAA---G---------AAGCAGGAG...............................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGATGC---TGGCGGCATCTGTT............................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTCGT---CGCGCATCC-----AGATGC...........................................................................2711.001000001
............................................................................................................................................................................................................................................................................................................................................................CGT---CGCGCATCC-----AGATGCCTCAATG---TG...............................................................2711.001100000
............................................................................................................................................................................................................................................GTAATGTGAGTACGGAGAGT---G.............................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................................................................GCCTCAATG---TGCATCACCCAGCCAG.................................................2511.001100000
............................................................................................................................................................................................................................................................................................................TACTGCGATTGCACCTGCTGCTC..............................................................................................................................2311.001000100
......................................................................................................................................................................................................................................................................................................................................CGTTAACGAC---ATCAGCTGTCGT---CGCGCAT........................................................................................2911.001000010
...............................................................................................................................................................................................................................................................................G---------AAGCAGGAGCTGCTGCTGCTACTGC...............................................................................................................................................2611.001100000
......................................................................................................................................................................................................................................................................................................................................CGTTAACGAC---ATCAGCTGTCGT---CGCGC..........................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTCGT---CGCGCATCC-----AGA..............................................................................2411.001100000
......................AAAGAACATACTCGATGAACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
AAGTTTTTCATCAAACGATGAATTCAGGTTTATTGATTGTTG-CGACAATATATACATTTAATTA---------TAAAACATATGAT---------TATA---------------ATT--CATT--------------------TA----------------------------------------------------TAC---CCCAGC-ATACTCTGCAT------TTGAAAGGCACA-AAAAGTACAAAAAAG---AAATTACAA---AACGATATGAGGCAAACTGAA---------------------------------------ACTGC---AACTG---CAACTGCTACTCCTCC-----A-------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:59 PM