dan_1010

CDS [Dana\GF19009-cds]; exon [dana_GLEANR_20565:8]; CDS [Dana\GF19009-cds]; exon [dana_GLEANR_20565:7]; intron [Dana\GF19009-in]

##################################################-------------------------------------------------------------------################################################## GGTCGGATTTCATGCCTGAAACTGATGTTCATGACTTTATTGAATCTAATGTGAGTTCCTAATGTACACATTAGATTTTTTTACCACCAATACTAAAAATAACAATAATAATTACAGAGATTTGAATATGTGGAAAATGAAATGAAATCACCGGTGTTTGACCTACG ************************************************(((((...((((((....)))))).....))))).................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V106 head	M044 female body	V039 embryo	V105 male body
..........CATGCCTGAAACTGATGTTCAT.......................................................................................................................................	22	0	1	2.00	2	1	0	1	0	0
......................................................................................................................GATTTGAATATGTGGAAAAT.............................	20	0	1	2.00	2	0	2	0	0	0
.....GATTTCATGCCTGAAACTGATGT...........................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................ATGAAATGAAATCACCGGTGTT.........	22	0	1	1.00	1	0	0	0	0	1
.............................................................................................................................ATATGTGGAAAATGAAATGAAAT...................	23	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................ATGAAATCACCGGTGTTTTAC.....	21	1	1	1.00	1	1	0	0	0	0
.........................................................................................................................TTGAATATGTGGAAAATGA...........................	19	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGTTCCTAATGTACACATTAGAT...........................................................................................	26	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................GGAAAATGAAATGAAATCACCGGT............	24	0	1	1.00	1	1	0	0	0	0
...................................................................................................................ATAGATTTGAATATGTGGAAAAC.............................	23	2	1	1.00	1	1	0	0	0	0
.......................................................................................................................................AATGAAATGAAATCACCGGT............	20	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................AATCACCGGTGTTTGACCTA..	20	0	1	1.00	1	0	0	1	0	0
........TTCATGCCTGAAACTGATGTTCATGACT...................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0
...............................................................................................................................AGGTGGAAAATGAAATGAAATCACCGGT............	28	1	1	1.00	1	1	0	0	0	0
...................................................................................................................................................TCACCGGTGTTTGACCTA..	18	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................ATATGTGGAAAATGAAAT........................	18	0	1	1.00	1	1	0	0	0	0
.....................................................................ATTAGCTTTTTTAACCACCA..............................................................................	20	2	1	1.00	1	1	0	0	0	0
..........CATGCCTGAAACTGATGT...........................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
...................AACTGATGTTCATGACTTTATTG.............................................................................................................................	23	0	1	1.00	1	0	0	0	1	0
..........CATGCCTGAAACTGATGTTC.........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................ATGTGGAAAATGAAATGAAAT...................	21	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................ATCACCGGTGTTTGACCTACG	21	0	1	1.00	1	0	0	0	1	0
..................................................................................................................AATAGATTTGAATATGTGGAAAATG............................	25	2	1	1.00	1	0	0	0	0	1
...................................................................................................................CTAGATTTGAATATGTGGAA................................	20	2	3	0.33	1	1	0	0	0	0
......................................................................TTAGATTTTATTACCACCAC.............................................................................	20	2	4	0.25	1	1	0	0	0	0
......................................................................TTAGATTTTATTACCACCC..............................................................................	19	2	4	0.25	1	1	0	0	0	0
......................................................................TTAGATTTTATAACCACCA..............................................................................	19	2	7	0.14	1	1	0	0	0	0
....................................................................................................................................GAAAAGAAAATGAAATCACC...............	20	2	10	0.10	1	1	0	0	0	0
.....................................................................CTTAGATTTTATTCCCACCA..............................................................................	20	3	12	0.08	1	1	0	0	0	0

CCAGCCTAAAGTACGGACTTTGACTACAAGTACTGAAATAACTTAGATTACACTCAAGGATTACATGTGTAATCTAAAAAAATGGTGGTTATGATTTTTATTGTTATTATTAATGTCTCTAAACTTATACACCTTTTACTTTACTTTAGTGGCCACAAACTGGATGC ************************************************(((((...((((((....)))))).....))))).................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V055 head	V105 male body
.................................................ACACCCAAGGAGTACATCTGTA................................................................................................	22	3	1	1.00	1	0	1	0	0
..........................................................................AAAAAAAATGGTGGTTAT...........................................................................	18	1	2	0.50	1	1	0	0	0
..........................................................................TAAAAAAATGGTAGTTAT...........................................................................	18	1	2	0.50	1	1	0	0	0
....................................................CTCACGCATTACATGTGTAG...............................................................................................	20	3	4	0.25	1	0	0	1	0
...................................................ACCAAAGGATTACATCTGTA................................................................................................	20	3	5	0.20	1	0	1	0	0
......................................................................AAGCAAAAAAGATGGTGGTTAT...........................................................................	22	3	5	0.20	1	1	0	0	0
...................................................ACTCAAAGAGTACATCTGTA................................................................................................	20	3	7	0.14	1	1	0	0	0
...................................................ACTCAACGAGTACATCTGTA................................................................................................	20	3	9	0.11	1	0	1	0	0
...........................................................................AAAAAAAGGGTGGTCATGTTTT......................................................................	22	3	9	0.11	1	0	0	0	1
..........................................................................AAAAAAGATGGTGGTTAT...........................................................................	18	2	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12947:1362534-1362700 -	dan_1010	GGTCGGATTTCATGCCTGAAACTGATGTTCATGACTTTATTGAATCTAATGTGAGTTCCT-AATGTAC--ACATTAGATTTT----------TT-----------------TACCA----------CCAATA------------------CT------AAAAATAACAATAA---------------------------TAATT------------------ACAGAGATTTGAATATGTGGAAAATGAAATGAAATCACCGGTGTTTGACCTACG---
droBip1	scf7180000394856:11239-11430 -		GGTCAGATTTTATGCCTGAAACTGACGTGAATGATTTTATTGAATCCAATGTGAGTTCCT-AAC------ATACAAATATTT----------TT-------------A---TAATACTAATGGTATACCATTACCTGCAAACTATAATTATT------AAAAATAATAATAA---------------------------TATTT------------------ACAGAGATTAGAATATGTGGAAAATGAATTAAAGTCACCAGTGTTTCGCCCGAG---
droKik1	scf7180000302413:112083-112266 +		GGTCTGATTTTATGCCAGAGAATGAAGTTAACGACTTCATCAAATCAAATGTAAATGTTGTTATT-------TT-AAAACAT---------TTCCTAATGTGGCGAAAT-------------------------ATT-----------------------------------TTATTTAAATTATCTATACTTTTATATTCACT------------------TTAGAGACTGGAGTATGTGGAAAATGAATCGATATCGCCAGTGATAGAACATCGCGG
droFic1	scf7180000454040:532129-532190 +		GGTCTGATTTTATGCCTGAAAATGAAGTCGCTGACTTTATAAAAGACAATGTAAGTTTCT-AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491238:234441-234523 +		CAATATTCATTATAACCC-------ATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTT------------------TCAGAAACTGGAGTATGTGGAAAACGAGCTGAAATCTGCAGTGATTGAGCAAAA---
droRho1	scf7180000778020:5425-5505 -		GGTCAGATTTTATGCCTGAAAATGAAGTCCCTGACTTTATTAAATCAAATGTGAGTTATA-AAGATAA--GTTTTAAATATT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301495:890147-890222 -		GGTCAGATTTTATGCCTGAAAGTGAAGTTTCTGACTTTATTAAATCCAATGTGAGTTTGTTTAT--------ACGTAAGAAT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414054:22169-22225 -		GGTCCGATTTTATGCCTGAAAGTGATGTCCCTGACTTTATTAAATCCAACGTAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000408984:292691-292747 +		GGTCAGATTTTATGCCTGAAAATGAAATCGAAGACTTTATTAAATGCAACGTGAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr4:937464-937542 -		GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTTAACGTGAGTTTATTTTTGTAA--ATACAAAA---T----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	4:731850-731930 -		GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTTAACGTGAGTTATT-TTTGTAA--ATACAACAATTT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_30:639366-639446 -		GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTTAACGTGAGTTATT-TTTGTAA--ATACAAAAATTT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	4:1002977-1003048 -		GGTCAGATTTTATGCCTGAAAATGAAGTTGCCGACTTTATTAAATTCAACGTGAGTTTTATTT--TAC--ATACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4512:341667-341799 +		GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTCAACGTGAGTTACT-TTTTTAC--ATACTAA----------------TATA-----------------------------------------------------AT------ACAATTAATACTAA---------------------------TACATACTAATATTTTATTTTAAGCA----------------AAAAATA-----------------ATTAAA--------
dp5	Unknown_group_8:51716-51872 +		GGTCCGACTTTATGCCTGACAACGAAGTTATCGATTTCATTGAATCCAATGTAAGTTTGT-TATG--------------------------------------------------------------CAATAACATG-----------------------------------TAATCTCAATT---------------------ATTTATATGTAATTTGAAACAGAGACTAGAGTATGTGGAAAACGAGTCGAAACCGCCAGTGATTGAGCAGCG---
droPer2	scaffold_103:36315-36471 +		GGTCCGACTTTATGCCTGACAACGAAGTTATCGATTTCATTGAATCCAATGTAAGTTTGT-TATG--------------------------------------------------------------CAATAACATG-----------------------------------TAATCTCAATT---------------------ATTTATATGTAATTTGAAACAGAGACTAGAGTATGTGGAAAACGAGTCGAAACCGCCAGTGATTGAGCAGCG---
droWil2	scf2_1100000004943:728029-728189 +		GGTCCGATTTTATGCCAGAAAATGAAGTAGCTGATTTTATTGAATCCAACGTAAGTGTAC-CTTATG------------------------------------------------------------CTATAGTTTA-------------ATC---------ATGACAGTAGTAACTTTGAAT--------------GTCTATT------------------TCAGAGATTGGAATATGTGGAGAACGACTCAAAACAGCCAGTGATTGAGCAGCG---
droVir3	scaffold_13052:800638-800816 -		GGTCAGATTTTATGCCCGACACCGAAGTTATCGATTTTATTGAATCGAATGTAAGTAAAA----------------GCGTCTTTTAAATAATATATAATAA-GTGTAA-------------------------------------------TCATCGC---------------A--TCACATTAACTATAT-TAAATA-TTCGC------------------ACAGAGATTAGAGTATGTGGAAAATGATTCGAAGGCGCCAGTGATTGAAGAACG---
droMoj3	scaffold_6498:1410509-1410683 +		GGTCAGATTACATGCCTGATAATGAAGTTAGTGATTTTATAAAATCGAATGTAAGTTTTACTTTACTGATATATGAATGTAT----------TT-------------GTATTATAT----------ATAATAATAT-------------------TG---------------TAATCTATA----------------ATACCTT------------------ATAGAGATTTGAATATGTGGAAAATATATTGAAGACGCCAGTGATTGATGAACG---
droGri2	scaffold_14822:156931-157100 +		GGTCCGATTTTATGCCCGAAAGCGAAGCTATCGCCTTTATTGAATCGAATGTAAGTTCTC-ACTGTGT--TTTTAATATTTT----------CTATA--------------------------------TTA-------------------TCATCGA---------------AAT--ATA-TATCTATAT------ATATTAT------------------GCAGAGATTAGAGTATGTGGAGAATGAGTCGAAGGCGCCAGTGATTGAAGACCG---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GGTCGGATTTCATGCCTGAAACTGATGTTCATGACTTTATTGAATCTAATGTGAGTTCCT-AATGTAC--ACATTAGATTTT----------TT-----------------TACCA----------CCAATA------------------CT------AAAAATAACAATAA---------------------------TAATT------------------ACAGAGATTTGAATATGTGGAAAATGAAATGAAATCACCGGTGTTTGACCTACG---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........CATGCCTGAAACTGATGTTCAT.......................................................................................................................................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0
...................................................................................................................................................................................................................................GATTTGAATATGTGGAAAAT................................	20	1	2.00	2	0	0	0	0	0	2
.....GATTTCATGCCTGAAACTGATGT...........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................ATGAAATGAAATCACCGGTGTT............	22	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................ATATGTGGAAAATGAAATGAAAT......................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................TTGAATATGTGGAAAATGA..............................	19	1	1.00	1	0	1	0	0	0	0
..................................................GTGAGTTCCT-AATGTAC--ACATTAGAT........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................GGAAAATGAAATGAAATCACCGGT...............	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................AATGAAATGAAATCACCGGT...............	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................AATCACCGGTGTTTGACCTA.....	20	1	1.00	1	1	0	0	0	0	0
........TTCATGCCTGAAACTGATGTTCATGACT...................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................TCACCGGTGTTTGACCTA.....	18	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................ATATGTGGAAAATGAAAT...........................	18	1	1.00	1	0	1	0	0	0	0
..........CATGCCTGAAACTGATGT...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................AACTGATGTTCATGACTTTATTG.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
..........CATGCCTGAAACTGATGTTC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................ATGTGGAAAATGAAATGAAAT......................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................ATCACCGGTGTTTGACCTACG---	21	1	1.00	1	0	0	1	0	0	0

droBip1

GGTCAGATTTTATGCCTGAAACTGACGTGAATGATTTTATTGAATCCAATGTGAGTTCCT-AAC------ATACAAATATTT----------TT-------------A---TAATACTAATGGTATACCATTACCTGCAAACTATAATTATT------AAAAATAATAATAA---------------------------TATTT------------------ACAGAGATTAGAATATGTGGAAAATGAATTAAAGTCACCAGTGTTTCGCCCGAG---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGTCTGATTTTATGCCAGAGAATGAAGTTAACGACTTCATCAAATCAAATGTAAATGTTGTTATT-------TT-AAAACAT---------TTCCTAATGTGGCGAAAT-------------------------ATT-----------------------------------TTATTTAAATTATCTATACTTTTATATTCACT------------------TTAGAGACTGGAGTATGTGGAAAATGAATCGATATCGCCAGTGATAGAACATCGCGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGTCTGATTTTATGCCTGAAAATGAAGTCGCTGACTTTATAAAAGACAATGTAAGTTTCT-AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAATATTCATTATAACCC-------ATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTT------------------TCAGAAACTGGAGTATGTGGAAAACGAGCTGAAATCTGCAGTGATTGAGCAAAA---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGTCAGATTTTATGCCTGAAAATGAAGTCCCTGACTTTATTAAATCAAATGTGAGTTATA-AAGATAA--GTTTTAAATATT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGTCAGATTTTATGCCTGAAAGTGAAGTTTCTGACTTTATTAAATCCAATGTGAGTTTGTTTAT--------ACGTAAGAAT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGTCCGATTTTATGCCTGAAAGTGATGTCCCTGACTTTATTAAATCCAACGTAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGTCAGATTTTATGCCTGAAAATGAAATCGAAGACTTTATTAAATGCAACGTGAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTTAACGTGAGTTTATTTTTGTAA--ATACAAAA---T----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........TATGCCTGAAAGTGAAGTTGCCGAC....................................................................................................................................................................................................................................................	25	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0
..........TATGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0
.........TTATGCCTGAAAGTGAAGTTGCCGAC....................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
..........TATGCCTGAAAGTGAAGTTGCCGACTT..................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0
.........TTATGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..........TATGCCTGAAAGTGAAGTTGC........................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0
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...................AAGTGAAGTTGCCGACTTTT................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................GAAAGTGAAGTTGCCGACTTT.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CGTGAGTTTATTTTTGTAA--TC...............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGTGAAGTTGCCGACTTTATTAA............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTTTATGCCTGAAAGTGAA.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTATGCCTGAAAGTGAAGTTGC........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTGAAGTTGCCGACTTTA................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTATTAAATTTAACGTGTT................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTTAACGTGAGTTATT-TTTGTAA--ATACAACAATTT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......TTTTATGCCTGAAAGTGAAGTTGC........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
..........TATGCCTGAAAGTGAAGTTGCCGACTT..................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........TATGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.......TTTTATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...............CTGAAAGTGAAGTTGCCGACTTT.................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............TGCCTGAAAGTGAAGTTGCCGACTT..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....GATTTTATGCCTGAAAGTGAAGTTGC........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTATGCCTGAAAGTGAAGT...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........TATGCCTGAAAGTGAAGTTGCCGA.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....AGATTTTATGCCTGAAAGT................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......TTTTATGCCTGAAAGTGAAGTTGCCGAC....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......TTTTATGCCTGAAAGTGAAGT...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....GATTTTATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTATGCCTGAAAGTGAAGTTGCCGAC....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTTAACGTGAGTTATT-TTTGTAA--ATACAAAAATTT----------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........ATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0
............TGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
.....GATTTTATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..........TATGCCTGAAAGTGAAGTTGCCGAC....................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.......TTTTATGCCTGAAAGTGAAGT...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...........ATGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.....GATTTTATGCCTGAAAGT................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................GAAGTTGCCGACTTTATT..............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............TGCCTGAAAGTGAAGTTGCCGACTTT.................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.........TTATGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
...CAGATTTTATGCCTGAAGT.................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	1	0

droYak3

GGTCAGATTTTATGCCTGAAAATGAAGTTGCCGACTTTATTAAATTCAACGTGAGTTTTATTT--TAC--ATACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............CCTGAAAATGAAGTTGCCGAC....................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0
.........................AGTTGCCGACTTTATTAAATTC........................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...........ATGCCTGAAAATGAAGTTGCCGAC....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............CTGAAAATGAAGTTGCCGAC....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........TATGCCTGAAAATGAAGTTGCCGAC....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........TTTATGCCTGAAAATGAAGTTGCCGACT...................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....GATTTTATGCCTGAAAATGAA.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............TGCCTGAAAATGAAGTTGCCGACT...................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................GAAAATGAAGTTGCCGACT...................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........ATGCCTGAAAATGAAGTTGCC.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GGTCAGATTTTATGCCTGAAAGTGAAGTTGCCGACTTTATTAAATTCAACGTGAGTTACT-TTTTTAC--ATACTAA----------------TATA-----------------------------------------------------AT------ACAATTAATACTAA---------------------------TACATACTAATATTTTATTTTAAGCA----------------AAAAATA-----------------ATTAAA--------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........TTATGCCTGAAAGTGAAGT...........................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	1	0
...........ATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
......ATTTTATGCCTGAAAGTGAAGTTGCCGAC....................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
......ATTTTATGCCTGAAAGTGAAGT...........................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............TGCCTGAAAGTGAAGTTGCCGACTT..................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......ATTTTATGCCTGAAAGTGAA.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
............TGCCTGAAAGTGAAGTTGCCGACT...................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....AGATTTTATGCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
.............GCCTGAAAGTGAAGTTGCC.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..........TATGCCTGAAAGTGAAGTTG.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dp5

GGTCCGACTTTATGCCTGACAACGAAGTTATCGATTTCATTGAATCCAATGTAAGTTTGT-TATG--------------------------------------------------------------CAATAACATG-----------------------------------TAATCTCAATT---------------------ATTTATATGTAATTTGAAACAGAGACTAGAGTATGTGGAAAACGAGTCGAAACCGCCAGTGATTGAGCAGCG---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................CGAAACCGCCAGTGATTGAGCA......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GTTATCGATTTCATTGAATCCAATA....................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................CAACGAAGTTATCGATTTCATTGAATCC........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTCGAAACCGCCAGTGATTGAGC.......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CGAAACCGCCAGTGATTGA.........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTCGAAACCGCCAGTGATTGAGCA......	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................GGAAAACGAGTCGAAACCGCCAGT...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TTATGCCTGACAACGAAGT...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AGTATGTGGAAAACGAGTCGAAACC.....................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....GACTTTATGCCTGACAACGA..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............GCCTGACAACGAAGTTATC.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GACTAGAGTATGTGGAAAACGAGT............................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....GACTTTATGCCTGACAACGAA.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCGAAACCGCCAGTGATTGAGC.......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGACTAGAGTATGTGGAAAACGAGC............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
GGTCCGACTTTATGCCTGACA..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........TTTATGCCTGACAACGAAGT...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................GACTAGAGTATGTGGAAAACG...............................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................AACCGCCAGTGATTGAGCAGC....	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CGAAACCGCCAGTGATTGAGCAGC....	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GGTCCGACTTTATGCCTGACAACGAAGTTATCGATTTCATTGAATCCAATGTAAGTTTGT-TATG--------------------------------------------------------------CAATAACATG-----------------------------------TAATCTCAATT---------------------ATTTATATGTAATTTGAAACAGAGACTAGAGTATGTGGAAAACGAGTCGAAACCGCCAGTGATTGAGCAGCG---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................CGAAACCGCCAGTGATTGA.........	19	1	5.00	5	5	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTCGAAACCGCCAGTGATTGA.........	21	1	4.00	4	3	0	1	0	0	0
....................................................................................................................................................................................................................................................AACGAGTCGAAACCGCCAGTGATTG..........	25	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................GACTAGAGTATGTGGAAAA.................................	19	1	2.00	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................AAAACGAGTCGAAACCGCCA.................	20	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................CTAGAGTATGTGGAAAACGAGT............................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................CGAGTCGAAACCGCCAGTGATTG..........	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................CGAAACCGCCAGTGATTGAGCA......	22	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................TAGAGTATGTGGAAAACGAGT............................	21	1	1.00	1	0	1	0	0	0	0

droWil2

GGTCCGATTTTATGCCAGAAAATGAAGTAGCTGATTTTATTGAATCCAACGTAAGTGTAC-CTTATG------------------------------------------------------------CTATAGTTTA-------------ATC---------ATGACAGTAGTAACTTTGAAT--------------GTCTATT------------------TCAGAGATTGGAATATGTGGAGAACGACTCAAAACAGCCAGTGATTGAGCAGCG---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................AAAACAGCCAGTGATTGAGC.......	20	1	3.00	3	0	0	1	2	0
......................................................................................................................................................................................................................................TGGAATATGTGGAGAACGACTCAAAAC......................	27	1	2.00	2	0	2	0	0	0
.............GCCAGAAAATGAAGTAGCT.......................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
........TTTATGCCAGAAAATGAAGT...........................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................AGCCAGTGATTGAGCAGC....	18	1	2.00	2	0	0	0	2	0
.........TTATGCCAGAAAATGAAGTAGCTGATTT..................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	1	0	0
..........................................................................................................................................................................................................................................ATATGTGGAGAACGACTCAAAAC......................	23	1	2.00	2	0	0	2	0	0
.........TTATGCCAGAAAATGAAGTAGCT.......................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
..........................GTAGCTGATTTTATTGAAT..........................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0
...........................................................................................................................................................................................................................................................CAAAACAGCCAGTGATTGAGC.......	21	1	2.00	2	0	0	0	2	0
..................AAAATGAAGTAGCTGATT...................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....GATTTTATGCCAGAAAATGAAGTAGC........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....................AATGAAGTAGCTGATTTTATT..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................GGAATATGTGGAGAACGACTCAAAAC......................	26	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................ATGTGGAGAACGACTCAAAAC......................	21	1	1.00	1	0	0	1	0	0
..........TATGCCAGAAAATGAAGTAGCTGATTTT.................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........TTTATGCCAGAAAATGAAGTAGCT.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
......................TGAAGTAGCTGATTTTATTGAAT..........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................GATTGGAATATGTGGAGA..................................	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................AACAGCCAGTGATTGAGCA......	19	1	1.00	1	0	0	0	1	0
.........TTATGCCAGAAAATGAAGTAGCTGATT...................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................TATGTGGAGAACGACTCAAAAC......................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................GGAATATGTGGAGAACGACTCAAAC.......................	25	1	1.00	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................CTCAAAACAGCCAGTGATTG..........	20	1	1.00	1	0	0	0	0	1
....................................................................................................................................................................................................................................................AACGACTCAAAACAGCCAGTGAT............	23	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................GTGGAGAACGACTCAAAACA.....................	20	1	1.00	1	0	0	0	1	0
..........TATGCCAGAAAATGAAGTAGC........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................TATGTGGAGAACGACTCAAAACAGCCAG................	28	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................AACAGCCAGTGATTGAGC.......	18	1	1.00	1	0	0	0	1	0
......ATTTTATGCCAGAAAATGAAGT...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................ATATGTGGAGAACGACTCA..........................	19	1	1.00	1	0	0	0	1	0
.................GAAAATGAAGTAGCTGATTTT.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................GGAATATGTGGAGAACGAC.............................	19	1	1.00	1	0	1	0	0	0
.....................ATGAAGTAGCTGATTTTATTGAAT..........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................AAACAGCCAGTGATTGAGCAGC....	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................ATATGTGGAGAACGACTC...........................	18	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................GATTGGAATATGTGGAGAACGA..............................	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAACAGCCAGTGATTGAGCAGC....	24	1	1.00	1	0	0	0	1	0
......ATTTTATGCCAGAAAATGAAGTAGCT.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................ATGTGGAGAACGACTCAAAACAGC...................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................ATGTGGAGAACGACTCAAAACAGCCAG................	27	1	1.00	1	0	1	0	0	0
.............GCCAGAAAATGAAGTAGCTGATT...................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0

droVir3

GGTCAGATTTTATGCCCGACACCGAAGTTATCGATTTTATTGAATCGAATGTAAGTAAAA----------------GCGTCTTTTAAATAATATATAATAA-GTGTAA-------------------------------------------TCATCGC---------------A--TCACATTAACTATAT-TAAATA-TTCGC------------------ACAGAGATTAGAGTATGTGGAAAATGATTCGAAGGCGCCAGTGATTGAAGAACG---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........ATGCCCGACACCGAAGTTATCGAT....................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAAGTTATCGATTTTATTGA............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAATGATTCGAAGGCGCCAGTGATT...........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGATTTTATGCCCGACACCGAAGTT..........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AGGCGCCAGTGATTGAAGA......	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............GCCCGACACCGAAGTTAT........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AAAATGATTCGAAGGCGCC..................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........TATGCCCGACACCGAAGTTATCGATTT..................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GTGGAAAATGATTCGAAGGCGCCA.................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGTGGAAAATGATTCGAAGGCGCC..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............TGCCCGACACCGAAGTTATCGA.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GATTCGAAGGCGCCAGTGATTGA.........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................CGACACCGAAGTTATCGATTTT.................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGCCCGACACCGAAGTTATCGATTTT.................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GAAAATGATTCGAAGGCGCCAGTGATT...........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AATGATTCGAAGGCGCCA.................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCCGACACCGAAGTTATCGA.....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCGACACCGAAGTTATCGATT...................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GACACCGAAGTTATCGATT...................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CATTAACTATAT-TAAATA-TTCGC------------------ACAG.....................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGATTTTATGCCCGACACCGAAGTTA.........................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGATTAGAGTATGTGGAAAA.................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATGATTCGAAGGCGCCAGTGAT............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GATTCGAAGGCGCCAGTGAT............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................ATGTGGAAAATGATTCGAAGGCGCCAGTG..............	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

GGTCAGATTACATGCCTGATAATGAAGTTAGTGATTTTATAAAATCGAATGTAAGTTTTACTTTACTGATATATGAATGTAT----------TT-------------GTATTATAT----------ATAATAATAT-------------------TG---------------TAATCTATA----------------ATACCTT------------------ATAGAGATTTGAATATGTGGAAAATATATTGAAGACGCCAGTGATTGATGAACG---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................GATAATGAAGTTAGTGATTTT.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................GATAATGAAGTTAGTGATTT..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...CAGATTACATGCCTGATAATGAAGTTA.........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................ATTGAAGACGCCAGTGATTGATG.......	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................TTGAATATGTGGAAAATAT..............................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................GTGGAAAATATATTGAAGACGC...................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................TTGAATATGTGGAAAATATATT...........................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................ATATTGAAGACGCCAGTGATTGAT........	24	1	1.00	1	1	0	0	0	0	0

droGri2

GGTCCGATTTTATGCCCGAAAGCGAAGCTATCGCCTTTATTGAATCGAATGTAAGTTCTC-ACTGTGT--TTTTAATATTTT----------CTATA--------------------------------TTA-------------------TCATCGA---------------AAT--ATA-TATCTATAT------ATATTAT------------------GCAGAGATTAGAGTATGTGGAGAATGAGTCGAAGGCGCCAGTGATTGAAGACCG---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........TTATGCCCGAAAGCGAAGCTAT........................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
..........................................................................................................................................................................................................................................GTATGTGGAGAATGAGTCG..........................	19	1	1.00	1	1	0

dan_1010

scaffold_12947:1362584-1362650 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads