ID:

dan_1008

 Coordinate:

scaffold_12947:1345412-1345562 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7

Flybase annnotation

exon [dana_GLEANR_20566:2]; CDS [Dana\GF19010-cds]; intron [Dana\GF19010-in]

Repeatable elements

NameClassFamilyStrand
(T)nSimple_repeatSimple_repeat+
BEL-14_DWil-I-intLTRPao-
mature
  1. scaffold_9383:346-364 -
  2. scaffold_12926:212509-212527 -
  3. dan_1008  scaffold_12947:1345433-1345451 -
  4. scaffold_12984:162885-162903 -
  5. scaffold_13034:981579-981597 -
  6. scaffold_13082:157207-157225 -
  7. scaffold_13082:630079-630097 -
  8. scaffold_13082:2296110-2296128 -
  9. dan_3764  scaffold_13082:3480220-3480238 -
  10. scaffold_13111:151813-151831 -
  11. scaffold_13137:210285-210303 -
  12. scaffold_13230:2613134-2613152 -
  13. scaffold_13230:2614455-2614473 -
  14. scaffold_13230:2615470-2615488 -
  15. scaffold_13250:1640759-1640777 -
  16. scaffold_13333:324342-324360 -
  17. scaffold_13335:3290615-3290633 -
  18. scaffold_13337:21769897-21769915 -
  19. scaffold_13417:6430748-6430766 -
  20. scaffold_13770:780070-780088 -
star
  1. scaffold_884:1-23 -
  2. scaffold_3027:161-183 -
  3. scaffold_9383:390-412 -
  4. scaffold_10939:3-25 -
  5. scaffold_12902:180210-180232 -
  6. scaffold_12926:212553-212575 -
  7. dan_1008  scaffold_12947:1345476-1345498 -
  8. scaffold_13034:981623-981645 -
  9. scaffold_13082:157250-157272 -
  10. scaffold_13082:2296153-2296175 -
  11. dan_3764  scaffold_13082:3480262-3480284 -
  12. scaffold_13111:151856-151878 -
  13. scaffold_13181:81517-81539 -
  14. scaffold_13260:1726483-1726505 -
  15. scaffold_13333:324386-324408 -
  16. scaffold_13337:9029245-9029267 -
  17. scaffold_13337:21769939-21769961 -
  18. scaffold_13417:6430792-6430814 -
  19. scaffold_13767:347228-347250 -
  20. scaffold_13770:780114-780136 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGAACTTGTCCAACTGATGTCCTGTGCTAACCTAGAGCTCGGGAAATGGGTATCGAATACCAAATGCATCAAATTGGAGGATAACACGGATTCCTCGAAATCATTACACAGCTCCACAAAAAAAAAAAAAAAAAAAATTCAGAGATCAGACCATACCTCCTATATGGATTTGGGGTCGCTGAATCCGAATCCGTGGTCAGTTGGTCCCAATCACGTCAGGTTTTCTAGAAAATAACGGTTGAATAGTCGA
******************************************************************************************************************...................................((((.....(((.....))).....))))..*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V105
male body		 V055
head
..................................................................................................................................................................................................................................TAGAAATTAACGGTGGAATA..... 20 2 2 2.00 4 2 1 0 1 0 0
..................................................................................................................................................................................................................................TAGAAATTAACGGTGGAATAC.... 21 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TAGAAATTAACGGTGGAATAT.... 21 3 5 0.40 2 0 1 1 0 0 0
........GTCCAACTGATGTCCTGTGCTAAC........................................................................................................................................................................................................................... 24 0 20 0.15 3 0 3 0 0 0 0
........GGCCAACTGATGTCCTGTGCTAACC.......................................................................................................................................................................................................................... 25 1 20 0.15 3 3 0 0 0 0 0
........................................................................................................................................................................................TCCGAATCCGTGGTCAGTTGG.............................................. 21 0 20 0.15 3 0 0 3 0 0 0
.........................TGCTAACCTAGAGCTCGGGAAATGG......................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0
..............CTGATGTCCTGTGCTAACCTAGAGCTCG................................................................................................................................................................................................................. 28 0 20 0.10 2 0 0 2 0 0 0
..............................................................................................................................................................................GGTCGCTGAGTCCGAATCCGTGGTC.................................................... 25 1 20 0.10 2 0 0 2 0 0 0
............................TAACCTAGAGCTCGGGAAATGGG........................................................................................................................................................................................................ 23 0 20 0.10 2 0 0 0 0 2 0
...........................CTAACCTAGAGCTCGGGAAATGGG........................................................................................................................................................................................................ 24 0 20 0.10 2 0 0 0 2 0 0
..................................................GTATCGTAAACCAAATGC....................................................................................................................................................................................... 18 2 15 0.07 1 0 0 1 0 0 0
..........................................................................................................AACCAGCTCCACAAGAAAAAAAAA......................................................................................................................... 24 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TATATGGATTTGGGGTCGC....................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
............................TAACCTAGAGCTCGGGAAATGGGTT...................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
........GTCCAACTGATGTCCTGTGCTAACC.......................................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................CCACAAAAAAAAAAAAAAAAAAA.................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
...............TGATGTCCTGTGCTAACCTAGAGCTCGG................................................................................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................CAAATCATTACACATCTCAA...................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................TCCGTGGTCAGTTGGTCGCA......................................... 20 1 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................................AATCCGAATGCGTGGTCA................................................... 18 1 20 0.05 1 0 1 0 0 0 0
.................................TAGAGCTCGGGAAATGGGC....................................................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................GCTGAATCCCAGTCCGTGGGC.................................................... 21 3 20 0.05 1 0 0 0 0 0 1
.............................AACCTAGAGCTCGGGAAATGGGTAT..................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................GATCTGGGGTCGCTAAGT.................................................................. 18 3 20 0.05 1 0 1 0 0 0 0
..............................ACCTAGAGCTCGGGAAATGGGTAT..................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0
...........................CTAACCTAGAGCTCGGGAAATGGGTATC.................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................TATATGGATTTGGGGTCGCTG..................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................................CCGAATCCGTGGTCAGTTGGTC............................................ 22 0 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................TGCACGGTTGAATAGTCGA 19 3 20 0.05 1 0 0 0 0 0 1
........................................................................................................................................................................................TCCGAATCCGTGGTCAGTTTGTC............................................ 23 1 20 0.05 1 0 0 1 0 0 0
..........CCAACTGATGTCCTGTGCTAACCTA........................................................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
..............CTGATGTCCTGTGCTAACCTAGAGCT................................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
.....................................................................................................................................................GACCATACCTCCTATATGGATT................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
.........TCAAACTGATGTCCTGTGCTAACCTAGA...................................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
............................TAACCTAGAGCTCGGGAAATGG......................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0
.......................................................................................................................................................................................AGCCGAATCCGTGGTCAGTTGGC............................................. 23 2 20 0.05 1 1 0 0 0 0 0
...........................CTAACCTAGAGCTCGGGAAATGGT........................................................................................................................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0
............................................................................GGAGGATAACACGGATTCCT........................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
..............................ACCTAGAGCTCGGGAAATGGGT....................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
...................GTCCTGTGCTAACCTAGAGCT................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................TCAGACCATACCTCCTATATGGATTTGGG............................................................................ 29 0 20 0.05 1 0 1 0 0 0 0
.........................TGCTAACCTAGAGCTCGGGAAA............................................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................TCGCTGAATCCGAATCCGTGGTCA................................................... 24 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................CAAAAAAAAAAAAAAAAAAAAT................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................AAATAACGGTTGAATGGTCGA 21 1 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TGCTTGAACAGGTTGACTACAGGACACGATTGGATCTCGAGCCCTTTACCCATAGCTTATGGTTTACGTAGTTTAACCTCCTATTGTGCCTAAGGAGCTTTAGTAATGTGTCGAGGTGTTTTTTTTTTTTTTTTTTTTAAGTCTCTAGTCTGGTATGGAGGATATACCTAAACCCCAGCGACTTAGGCTTAGGCACCAGTCAACCAGGGTTAGTGCAGTCCAAAAGATCTTTTATTGCCAACTTATCAGCT
***********************************************************************...................................((((.....(((.....))).....))))..****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V039
embryo
 V105
male body		 V055
head
...........GTTGACTACAGGACACGATTGGATCT...................................................................................................................................................................................................................... 26 0 20 1.65 33 33 0 0 0 0 0
....TGAACAGGTTGACTACAGGACACGA.............................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
............TTGACTACAGGACACGATTGGATCT...................................................................................................................................................................................................................... 25 0 20 0.40 8 8 0 0 0 0 0
.........AGGTTGACTACAGGACACGATTGGATCT...................................................................................................................................................................................................................... 28 0 20 0.35 7 7 0 0 0 0 0
..................................................................................................................................................................................................................................ATCTTTAATTGCCACCTTATA.... 21 3 5 0.20 1 0 1 0 0 0 0
...............................GGATCTCGAGCCCTTTACCCATAGCTT................................................................................................................................................................................................. 27 0 20 0.15 3 3 0 0 0 0 0
..........GGTTGACTACAGGACACGATTGGATCTC..................................................................................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0 0
...............................GGATCTCGAGCCCTTTACCCATAGCT.................................................................................................................................................................................................. 26 0 20 0.15 3 3 0 0 0 0 0
.............TGACTACAGGACACGATTGGATCT...................................................................................................................................................................................................................... 24 0 20 0.15 3 0 1 0 0 2 0
...............ACTACAGGACACGATTGGATCT...................................................................................................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
......................GACACGATTGGATCTCGAGCCCTT............................................................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................................................................CCTAAACCCCAGCGACTTAGGCTTAG........................................................... 26 0 20 0.10 2 0 2 0 0 0 0
...............................GGATCTCGAGCCCTTTACCCATAGC................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
................CTACAGGACACGATTGGATCTCGAG.................................................................................................................................................................................................................. 25 0 20 0.10 2 0 2 0 0 0 0
..............GACTACAGGACACGATTGGATCTCG.................................................................................................................................................................................................................... 25 0 20 0.10 2 1 1 0 0 0 0
................................GATCTCGAGCCCTTTACCCATAGCTTAT............................................................................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
...................................CTCGAGCCCTTTACCCATAGCTTATGGT............................................................................................................................................................................................ 28 0 20 0.10 2 0 2 0 0 0 0
...............................GGATCTCGAGCCCTTTACCCAT...................................................................................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
........CAGGTTGACTACAGGACACGATTGGAT........................................................................................................................................................................................................................ 27 0 20 0.10 2 0 2 0 0 0 0
...............ACTACAGGACACGATTGGATCTCGAG.................................................................................................................................................................................................................. 26 0 20 0.10 2 1 1 0 0 0 0
..............GACTACAGGACACGATTGGAT........................................................................................................................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................................................TGGTATGGAGGATATACCTAA................................................................................ 21 0 20 0.10 2 0 0 2 0 0 0
................................GATCTCGAGCCCTTTACCCATAGCT.................................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
.....................GGACACGATTGGATCTCGAGCCCTT............................................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................................................................AGGGTTAGGGCGGTCCA............................. 17 2 12 0.08 1 0 0 0 0 0 1
........................CACGATTGGATCTCGAGCCCTTTACCCA....................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.....................................CGAGCCCTTTACCCATAGCTCAT............................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
....................AGGACACGATTGGATCTCGAGCCCT.............................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
..........GGTTGACTACAGGACACGATTGGA......................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
........................CACGATTGGATCTCGAGCCCTTTAC.......................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................AGGCTTAGGCACCAGTCAAC............................................... 20 0 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................CCCCAGCGACTTAGGCTTAGGCA........................................................ 23 0 20 0.05 1 1 0 0 0 0 0
........CAGGTGGACTACAGGACATGATTGGAT........................................................................................................................................................................................................................ 27 2 20 0.05 1 1 0 0 0 0 0
..............................CGGATCTCGAGCCCTTTACCCATAG.................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
......................................GAGCCCTTTACCCATAGCTT................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
...........GTTGACTACAGGACACTATTGGATCT...................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................AGCGGCTTAGGCTTAGGCACC...................................................... 21 1 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................CCCCAGCGACTTAGGCTTAGGCACCAGT................................................... 28 0 20 0.05 1 0 0 1 0 0 0
..........................CGATTGGATCTCGAGCCCTTTACCCAT...................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................................................TAGGCTTAGGCACCGGTCAAC............................................... 21 1 20 0.05 1 0 0 1 0 0 0
..............................TGGATCTCGAGCCCTTTACCCATAGCC.................................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................ACCCCAGCGACTTAGGCTTAGGCACCA..................................................... 27 0 20 0.05 1 1 0 0 0 0 0
....................................TCGAGCCCTTTACCCATAGCTTATGGT............................................................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................CCAGCGGCTTAGGCTTAGGCG........................................................ 21 2 20 0.05 1 1 0 0 0 0 0
.........AGGTTGACTACAGGACACGCTTGGATCT...................................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
..........................CGATTGGATCTCGAGCCCTTTACCC........................................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
......................GACACGATTGGATCTCGAGCCCT.............................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
...........GTTGACTACAGGACACGCTTGGATCT...................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
.....................................CGAGCCCTTTACCCATAGCTTATGGGT........................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.....................................CGAGCCCTTTACCCATAGCTTATGCTT........................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.......................ACACGATTGGATCTCGAGCCCT.............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
................................GATCTCGAGCCCTTTACCCATAGCTT................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
.....................GGACACGATTGGATCTCGAGCCCTTT............................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
....................AGGACACGATTGGATCTCGAGCCCTTT............................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
............TTGACTACAGGACACGATTGGATCTC..................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................TCTAGTCTGGTATGGAGGATATACCT.................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
.................TACAGGACACGATTGGATATCGAGCCC............................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
...........GTTGACTACAGGACACGATTGGAT........................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................CCCAGCGACTTAGGCTTAGGC......................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...................................AAAGAGCCCTTTACCCATAGCTT................................................................................................................................................................................................. 23 3 20 0.05 1 0 1 0 0 0 0
..............TTTTACAGGACACGATTGGATCTCGAGC................................................................................................................................................................................................................. 28 3 20 0.05 1 1 0 0 0 0 0
.....................GGACACGATTGGATCTCGAGCCCT.............................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0
.....................................CGAGCCCTTTACCCATAGCTT................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................CCAGCGGCTTAGGCTTAGGCA........................................................ 21 1 20 0.05 1 0 0 0 0 1 0
.............TGACTACAGGACACGATTGGATC....................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................GGATATACCTAAACCCCAGCGACTT................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..............................TGGATCTCGAGCCCTTTACCCATAGCTT................................................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................TGGAGGATATACCTAGACCCCAGCGG...................................................................... 26 2 20 0.05 1 0 0 1 0 0 0
.....................GGATACGATTGGATCTCGAGCCCTT............................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................CTAAACCCCAGCGACTTAGGCTTAGG.......................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................ACACGATTGGATCTCGAGCCCTT............................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 1 0
.............................................................................................................................................................................CCCAGCGACTTAGGCTTAGGCACCAG.................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..........GGTTGACTACAGGACACAATTGGATC....................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................CCAGCGACTTAGGCTTAGGCACCAGT................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.........AGGTTGACTACAGGACACGATTGGATCTG..................................................................................................................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
........................CACGATTGGATCTCGAGCCCTTT............................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................CCAGCGACTTAGGCTTAGGCACCAG.................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.............TGACTACAGGACACCATTGGATCT...................................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 1 0 0
..............................................................................................................TCGAGGTGTTTTTTTTTTT.......................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
...................................CTCGAGCCCTTTACCCATAGCT.................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
.............TGACTACAGGACACGATTGGATCGC..................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
........CAGGTTGACTACAGGACACGATTGGATCT...................................................................................................................................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0
..................ACAGGACACGATTGGATCTCGAGCCCTTT............................................................................................................................................................................................................ 29 0 20 0.05 1 1 0 0 0 0 0
......................GACACGATTGGATCTCGAGCCCTTT............................................................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0
...........GTTGACTACAGGACACGATTGGATC....................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0
..............GACTACAGGACACGATTGGATCTC..................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..................ACAGGACACGATTGGATCTCGAGCCCT.............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12947:1345362-1345612 - dan_1008 ACGAAC---------TTGTCCAACTGATGTCCTGTGCTAACCTAGAGCTCGGGAAATGGGTATCGAATACCAAATGCATCAAATTGGAGGATAACAC---GGATTCCTCGAAATCATTACACAGCTCCACAAAAAAA----------------------------------------------------------------------------------------------AAAAAAAAAAAAATTCAGAGATCAGACCATACCTCCTATATGGATTTGGGGTCGCTGAATCCGAATCCGTGGTCAGTTGGTCCCAATCACGTCAGGTTTTCTAGAAAATAACGGTTGAATAGTCGA
droBip1 scf7180000396714:1151112-1151289 + AGATTG---------AA----GGCCAAAATCTT------------------------------------------------------------------------------------------------------------CTTCCGGACTACAACAGAGCTCCAACAAAAAA----------------------------------------------------------AAAAAAAAAAAATTACAGAGATCAGACCATACCTCCTATATGGATTTGGGGTCGCTGAATCCGAATCCGTGGTCAGTTGGTCGCCATCACGTCAGGTTTTCGAGAAAATAACGGTTGAATAGTCGA
droKik1 scf7180000300027:11908-12015 + AGAA-C---------TCGTTAACATATTGGAACCTGCAGGCTTTGTTCTAACAAAATGGGCTTCGAATTGTGAAACTAATATG---------------------TATACC------------------------------------------------------------------AAATCGAATGCAG-AAAT-GGAGA---------------------------------------------TCTTG--------------------------------------A-------------------------------------------------------------------A
droFic1 scf7180000453928:237364-237561 - TGTTGT--------------------------------GGCCTGGAACTTTAAA-ATGAATTT--AGAAACGAATGGTTTAAAATGAAGAATGATGG------T--CCCGTGGTC-TAACACAGCCACACACAAAAA-----------------------------------A--------------------------------------------------------------AATATTTTTTCTGGAGGTCAGACCATGTTTACTATATGTTTTCAGGGTCGCTGAATCCGAATCCGAGGTCCAAAAAACCCCAGCACGTCAGGGTTCTGACAAA------------------A
droEle1 scf7180000491025:53706-53810 + ACGAGT---------TGATTGAGCTGATGTCTTGTTCTAATCATGAGCTCGTTAAATGGGTGTCCAATATTCCCTGCATACAAACGAATGACACCGA---GGGCTCTACTCAGTCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000764096:19099-19227 - ATGAAC---------TTGTGAAGCTGCTAGCGGAGGCTAAGTTTAATCTACGCAAATGGAGTTCCAATTGTAAAACTCTAAAG-----------------------------------------------------------------------------------------GATTCTATTCCCCGGAGGA------------CTGCGCTCACCAGCCATCCACAAAGCAG--------------TCAAA--------------------------------------------------------------------------------------AA------------------A
droBia1 scf7180000302116:5582-5701 + ATTAAA---------C-----AGCC-----------------------------------------------------------------------------------------------------ACACAAAAAAATATTTTTTCGG-----------------------------------------------------------------------------------------------GTGTGGAGGTCAGACCATGTTTATTTTATGTTTTCGGGGTCGCTGAATCCGAATCCGAGGTCCGAAAAACCCCAGCACGTCAGGGTT---------------------------
droTak1 scf7180000410654:15757-15867 + ACGAGC---------TGGTTCAGATGATGTCTCGCGCCAACCTTGAGCTCGGAAAATGGGTATCGAATACACCATGTATACAAACGGATAATAGCGACACACAATCTACACAAACGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------C
droEug1 scf7180000409691:6582-6688 + ACAAAT---------TCGTCTAACTGATGTCCTGTGCTAAGCTAAAGCTTGGGAAATGGGTATCTAATTCCAAATACATTCAATCGGAGGATAACAA---GTATTCATCTTAATCATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
dm3 chr3RHet:1426622-1426690 + C--------------TCATTCAGCTGATGTCCGAGGCAAAACTCGAGATTGGAAAATGGGTGTTCAGCAGCAACAAAATCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:24524350-24524424 + AGGAAA------T--TGAGACAAGTGATGAAGAAGGGCGGCATGCATCTGCGAAAATGGGTTGCAAATGACGAACGTATTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_75:123171-123237 - ATAAAC---------TGATACAGCTACTGGAACGCGGAAGCATGGAGCTTAGCAAATGGGTCGCGAACTC---ATGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_754:40380-40457 + GAAGAT---------TATCCTGATT-----------------------CCCGGAGATAATTATATGGTAC-----------AAACAAAAGAAAAAAA---ATAC-------AA------------------------------------------------------------------------------------------------------------------------------------TCATAAATTGAAGTATGC----------------------------------------------------------------------------------------------
droEre2 scaffold_4929:23438621-23438759 + ATGTTCTCCAACTAATTTCAAATAAATTAGAAAAAGTAGGACAAAATTTAAGAAAATGGATATCTATTAATTCAGAAACATTATT----------------------------------------------------------------------------------------------AACAGTAGAGGATACTGGGGATAACAAGGTTCTTAGTATTATTATATAGTAC----------------------------------------------------------------------------------------------------T------------------------A
dp5 Unknown_group_54:48842-48966 - AGATCA---------TTACACAGCC-----------------------------------------------------------------------------------------------------CTACAAAAAAAGTGTCTTGTGC--------------------------------------------------------------------------------------------------GACTGACCAGAGTATCATATCCGTATGTATTTTGGGGCCCTGAACACGAATCCAAGGTCAGATTTGGTCCATCACGTCAGGTTTTTT------------------------
droPer2 scaffold_107:120456-120539 + ACGAAC---------TTATACAACTAATGTCCTGCGCCAAGCTAGAGCTCGGGAAATGGGTATCCAATACCAAAGGCATAACAGAGGAGGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000002993:4302-4403 + AGGAAC---------TTATTCAACTTATGTCCTGTGCTAATTTGGAGCTTGGGAAATGGGTATCAAACACACCTCGCATACCAACAGAAGGAACTGA------TTCTACACAATCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13045:1863099-1863102 + ACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_4011:1590-1656 + ACTTAT---------TGGTTGCACTCATGTCACGTGCGCAATTGGAATTGGGAAAATGGATCTCAAATAGCAAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACGAAC---------TTGTCCAACTGATGTCCTGTGCTAACCTAGAGCTCGGGAAATGGGTATCGAATACCAAATGCATCAAATTGGAGGATAACAC---GGATTCCTCGAAATCATTACACAGCTCCACAAAAAAA----------------------------------------------------------------------------------------------AAAAAAAAAAAAATTCAGAGATCAGACCATACCTCCTATATGGATTTGGGGTCGCTGAATCCGAATCCGTGGTCAGTTGGTCCCAATCACGTCAGGTTTTCTAGAAAATAACGGTTGAATAGTCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................GTCCAACTGATGTCCTGTGCTAAC............................................................................................................................................................................................................................................................................................................................24200.153300000
..................................................................................................................................................................................................................................................................................................TCCGAATCCGTGGTCAGTTGG..............................................21200.153000003
..................................TGCTAACCTAGAGCTCGGGAAATGG..........................................................................................................................................................................................................................................................................................................25200.102200000
.......................CTGATGTCCTGTGCTAACCTAGAGCTCG..................................................................................................................................................................................................................................................................................................................28200.102000002
.....................................TAACCTAGAGCTCGGGAAATGGG.........................................................................................................................................................................................................................................................................................................23200.102000020
....................................CTAACCTAGAGCTCGGGAAATGGG.........................................................................................................................................................................................................................................................................................................24200.102002000
...........................................................................................................................................................................................................................................................................TATATGGATTTGGGGTCGC.......................................................................19200.051000001
.....................................TAACCTAGAGCTCGGGAAATGGGTT.......................................................................................................................................................................................................................................................................................................25200.051100000
.................GTCCAACTGATGTCCTGTGCTAACC...........................................................................................................................................................................................................................................................................................................................25200.051100000
..............................................................................................................................CCACAAAAAAA----------------------------------------------------------------------------------------------AAAAAAAAAAAA..................................................................................................................23200.051010000
........................TGATGTCCTGTGCTAACCTAGAGCTCGG.................................................................................................................................................................................................................................................................................................................28200.051100000
..........................................TAGAGCTCGGGAAATGGGC........................................................................................................................................................................................................................................................................................................19200.051010000
......................................AACCTAGAGCTCGGGAAATGGGTAT......................................................................................................................................................................................................................................................................................................25200.051100000
.......................................ACCTAGAGCTCGGGAAATGGGTAT......................................................................................................................................................................................................................................................................................................24200.051001000
....................................CTAACCTAGAGCTCGGGAAATGGGTATC.....................................................................................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................................................TATATGGATTTGGGGTCGCTG.....................................................................21200.051100000
...................................................................................................................................................................................................................................................................................................CCGAATCCGTGGTCAGTTGGTC............................................22200.051000001
...................CCAACTGATGTCCTGTGCTAACCTA.........................................................................................................................................................................................................................................................................................................................25200.051100000
.......................CTGATGTCCTGTGCTAACCTAGAGCT....................................................................................................................................................................................................................................................................................................................26200.051000001
...............................................................................................................................................................................................................................................................GACCATACCTCCTATATGGATT................................................................................22200.051010000
.....................................TAACCTAGAGCTCGGGAAATGG..........................................................................................................................................................................................................................................................................................................22200.051000010
....................................CTAACCTAGAGCTCGGGAAATGGT.........................................................................................................................................................................................................................................................................................................24200.051100000
.....................................................................................GGAGGATAACAC---GGATTCCT.........................................................................................................................................................................................................................................................20200.051100000
.......................................ACCTAGAGCTCGGGAAATGGGT........................................................................................................................................................................................................................................................................................................22200.051000001
............................GTCCTGTGCTAACCTAGAGCT....................................................................................................................................................................................................................................................................................................................21200.051000001
............................................................................................................................................................................................................................................................TCAGACCATACCTCCTATATGGATTTGGG............................................................................29200.051100000
..................................TGCTAACCTAGAGCTCGGGAAA.............................................................................................................................................................................................................................................................................................................22200.051100000
..........................................................................................................................................................................................................................................................................................TCGCTGAATCCGAATCCGTGGTCA...................................................24200.051100000
.................................................................................................................................CAAAAAAA----------------------------------------------------------------------------------------------AAAAAAAAAAAAAT................................................................................................................22200.051010000
droBip1
AGATTG---------AA----GGCCAAAATCTT------------------------------------------------------------------------------------------------------------CTTCCGGACTACAACAGAGCTCCAACAAAAAA----------------------------------------------------------AAAAAAAAAAAATTACAGAGATCAGACCATACCTCCTATATGGATTTGGGGTCGCTGAATCCGAATCCGTGGTCAGTTGGTCGCCATCACGTCAGGTTTTCGAGAAAATAACGGTTGAATAGTCGASizeHit CountTotal NormTotal
No Reads
droKik1
AGAA-C---------TCGTTAACATATTGGAACCTGCAGGCTTTGTTCTAACAAAATGGGCTTCGAATTGTGAAACTAATATG---------------------TATACC------------------------------------------------------------------AAATCGAATGCAG-AAAT-GGAGA---------------------------------------------TCTTG--------------------------------------A-------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TGTTGT--------------------------------GGCCTGGAACTTTAAA-ATGAATTT--AGAAACGAATGGTTTAAAATGAAGAATGATGG------T--CCCGTGGTC-TAACACAGCCACACACAAAAA-----------------------------------A--------------------------------------------------------------AATATTTTTTCTGGAGGTCAGACCATGTTTACTATATGTTTTCAGGGTCGCTGAATCCGAATCCGAGGTCCAAAAAACCCCAGCACGTCAGGGTTCTGACAAA------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
ACGAGT---------TGATTGAGCTGATGTCTTGTTCTAATCATGAGCTCGTTAAATGGGTGTCCAATATTCCCTGCATACAAACGAATGACACCGA---GGGCTCTACTCAGTCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATGAAC---------TTGTGAAGCTGCTAGCGGAGGCTAAGTTTAATCTACGCAAATGGAGTTCCAATTGTAAAACTCTAAAG-----------------------------------------------------------------------------------------GATTCTATTCCCCGGAGGA------------CTGCGCTCACCAGCCATCCACAAAGCAG--------------TCAAA--------------------------------------------------------------------------------------AA------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
ATTAAA---------C-----AGCC-----------------------------------------------------------------------------------------------------ACACAAAAAAATATTTTTTCGG-----------------------------------------------------------------------------------------------GTGTGGAGGTCAGACCATGTTTATTTTATGTTTTCGGGGTCGCTGAATCCGAATCCGAGGTCCGAAAAACCCCAGCACGTCAGGGTT---------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACGAGC---------TGGTTCAGATGATGTCTCGCGCCAACCTTGAGCTCGGAAAATGGGTATCGAATACACCATGTATACAAACGGATAATAGCGACACACAATCTACACAAACGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------CSizeHit CountTotal NormTotal
No Reads
droEug1
ACAAAT---------TCGTCTAACTGATGTCCTGTGCTAAGCTAAAGCTTGGGAAATGGGTATCTAATTCCAAATACATTCAATCGGAGGATAACAA---GTATTCATCTTAATCATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
C--------------TCATTCAGCTGATGTCCGAGGCAAAACTCGAGATTGGAAAATGGGTGTTCAGCAGCAACAAAATCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................CGAGATTGGAAAATGGGTGTT.....................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAACTCGAGATTGGAAAATGG..........................................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000020000000
...........................................CGAGATTGGAAAATGGGTGTTCAGC.................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................GATTGGAAAATGGGTGTTCAGCAGC..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AACTCGAGATTGGAAAATGGG.........................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................ATTCAGCTGATGTCCGAGGCA...............................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...............................................ATTGGAAAATGGGTGTTCAGC.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GGCAAAACTCGAGATTGGAAAATGGG.........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAAAACTCGAGATTGGAAAATGGG.........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AAAACTCGAGATTGGAAAATGGG.........................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
........................................ACTCGAGATTGGAAAATGGGT........................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................AAACTCGAGATTGGAAAATGGG.........................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................AAAACTCGAGATTGGAAAATG...........................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AACTCGAGATTGGAAAATGGGT........................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................TCGAGATTGGAAAATGGGTGT......................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAACTCGAGATTGGAAAATGGGTGT......................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGGAAA------T--TGAGACAAGTGATGAAGAAGGGCGGCATGCATCTGCGAAAATGGGTTGCAAATGACGAACGTATTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................TGGGTTGCAAATGACGAACGTATT.....................................................................................................................................................................................................................................................................................24101.101100000061310000000
................................................TGCGAAAATGGGTTGCAAATGACGAACG.........................................................................................................................................................................................................................................................................................2880.63500000012200000000
.................................AGGGCGGCATGCATCTGCGAAAATGGGTT.......................................................................................................................................................................................................................................................................................................2930.33100000010000000000
...................................................GAAAATGGGTTGCAAATGACGAACGTA.......................................................................................................................................................................................................................................................................................2790.33300000001020000000
..............................................TCTGCGAAAATGGGTTGCAAATGACGAA...........................................................................................................................................................................................................................................................................................2880.25200000001000010000
.....................................CGGCATGCATCTGCGAAAATGGGT........................................................................................................................................................................................................................................................................................................2460.17100000000001000000
.....................................CGGCATGCATCTGCGAAAATGG..........................................................................................................................................................................................................................................................................................................2270.14100000001000000000
..........................................TGCATCTGCGAAAATGGGTTG......................................................................................................................................................................................................................................................................................................2170.14100010000000000000
.........................................ATGCATCTGCGAAAATGGGTTG......................................................................................................................................................................................................................................................................................................2270.14100000000001000000
................................................TGCGAAAATGGGTTGCAAATGACGAAC..........................................................................................................................................................................................................................................................................................2780.13100000000000010000
..................................................CGAAAATGGGTTGCAAATGACGAACGTA.......................................................................................................................................................................................................................................................................................2880.13100000010000000000
....................................................AAAATGGGTTGCAAATGACGAACGTA.......................................................................................................................................................................................................................................................................................2690.11100000000010000000
.....................................................AAATGGGTTGCAAATGACGAACGTATT.....................................................................................................................................................................................................................................................................................2790.11100000000010000000
...................................................GAAAATGGGTTGCAAATGACGAACGTATT.....................................................................................................................................................................................................................................................................................2990.11100000010000000000
.....................................................AAATGGGTTGCAAATGACGAACG.........................................................................................................................................................................................................................................................................................2390.11100000000001000000
.....................................................AAATGGGTTGCAAATGACGAACGTA.......................................................................................................................................................................................................................................................................................2590.11100000010000000000
.......................................................ATGGGTTGCAAATGACGAACGT........................................................................................................................................................................................................................................................................................22100.10100000000001000000
........................................................TGGGTTGCAAATGACGAACGTA.......................................................................................................................................................................................................................................................................................22100.10100000001000000000
......................................................AATGGGTTGCAAATGACGAACGTA.......................................................................................................................................................................................................................................................................................24100.10100000010000000000
........................................................TGGGTTGCAAATGACGAACGTAT......................................................................................................................................................................................................................................................................................23100.10100000010000000000
........................................................TGGGTTGCAAATGACGAACGTATTT....................................................................................................................................................................................................................................................................................25100.10100000000100000000
...................................................GAAAATGGGTTGCAAA..................................................................................................................................................................................................................................................................................................16100.10100000000001000000
droSec2
ATAAAC---------TGATACAGCTACTGGAACGCGGAAGCATGGAGCTTAGCAAATGGGTCGCGAACTC---ATGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAAGAT---------TATCCTGATT-----------------------CCCGGAGATAATTATATGGTAC-----------AAACAAAAGAAAAAAA---ATAC-------AA------------------------------------------------------------------------------------------------------------------------------------TCATAAATTGAAGTATGC----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................GAGATAATTATATGGTAC-----------AAACA...............................................................................................................................................................................................................................................................................2330.33101000000000
droEre2
ATGTTCTCCAACTAATTTCAAATAAATTAGAAAAAGTAGGACAAAATTTAAGAAAATGGATATCTATTAATTCAGAAACATTATT----------------------------------------------------------------------------------------------AACAGTAGAGGATACTGGGGATAACAAGGTTCTTAGTATTATTATATAGTAC----------------------------------------------------------------------------------------------------T------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
AGATCA---------TTACACAGCC-----------------------------------------------------------------------------------------------------CTACAAAAAAAGTGTCTTGTGC--------------------------------------------------------------------------------------------------GACTGACCAGAGTATCATATCCGTATGTATTTTGGGGCCCTGAACACGAATCCAAGGTCAGATTTGGTCCATCACGTCAGGTTTTTT------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................ACACGAATCCAAGGTCAGATT...............................................21613.838308100100010
.............................................................................................................................................................................................................................................................................................CTGAACACGAATCCAAGGTCA...................................................21811.138918510011000
..............................................................................................................................................................................................................................................................................................TGAACACGAATCCAAGGTCAG..................................................2177.715405400000000
..............................................................................................................................................................................................................................................................................................TGAACACGAATCCAAGGTCA...................................................2080.8870700000000
................................................................................................................................................................................................................................................................................................AACACGAATCCAAGGTCAGAT................................................2150.8040200002000
..............................................................................................................................................................................................................................................................................................TGAACACGAATCCAAGGTCAGA.................................................2260.6740300000010
.................................................................................................................................................................................................................................................................................................ACACGAATCCAAGGTCAGAT................................................2060.6740400000000
................................................................................................................................................................................................................................................................................................AACACGAATCCAAGGTCAGATT...............................................2250.6030300000000
..............................................................................................................................................................................................................................................................................................TGAACACGAATCCAAGGTCAGATT...............................................2440.5021100000000
..................................................................................................................................................................................................................................................................................................CACGAATCCAAGGTCAGATTT..............................................2160.3320200000000
................................................................................................................................................................................................................................................................................................AACACGAATCCAAGGTCAGA.................................................2070.2920200000000
.............................................................................................................................................................................................................................................................................TATGTATTTTGGGGCCCTGAACACGAA.............................................................2770.2920000000020
...............................................................................................................................................................................................................................................................................................GAACACGAATCCAAGGTCAGATTT..............................................2440.2511000000000
..........................................................................................................................................................................................................................................................................................GCCCTGAACACGAATCCAAGGTCAGATT...............................................2840.2510100000000
.................................................................................................................................................................................................................................................................................................ACACGAATCCAAGGTCAGA.................................................1990.2220100000010
......................................................................................................................................................................................................................................................................................TGGGGCCCTGAACACGAATCCAAGG......................................................2550.2010000000010
..........................................................................................................................................................................................................................................................................................GCCCTGAACACGAATCCAAGGTCAGA.................................................2650.2010100000000
...............................................................................................................................................................................................................................................................................................GAACACGAATCCAAGGTCAGA.................................................2160.1710000000010
..................................................................................................................................................................................................................................................................................................CACGAATCCAAGGTCAGAT................................................1960.1710100000000
...............................................................................................................................................................................................................................................................................................GAACACGAATCCAAGGTCAG..................................................2070.1410100000000
.................................................................................................................................................................................................................................................................................TATTTTGGGGCCCTGAACACGAATCC..........................................................2670.1410100000000
.............................................................................................................................................................................................................................................................................................CTGAACACGAATCCAAGGTC....................................................2080.1311000000000
..............................................................................................................................................................................................................................................................................................TGAACACGAATCCAAGGTCAC..................................................2180.1311000000000
......................................................................................................................................................................................................................................................................................................AATCCAAGGTCAGATTTG.............................................1880.1310100000000
...............................................................................................................................................................................................................................................................................................GAACACGAATCCAAGGTCA...................................................1980.1310100000000
...........................................................................................................................................................................................................................................................................................CCCTGAACACGAATCCAAGG......................................................2080.1310100000000
................................................................................................................................................................................................................................................................................................AACACGAATCCAAGGTCAG..................................................1980.1310000001000
.............................................................................................................................................................................................................................................................................................CTGAACACGAATCCAAGGTCG...................................................2190.1110100000000
droPer2
ACGAAC---------TTATACAACTAATGTCCTGCGCCAAGCTAGAGCTCGGGAAATGGGTATCCAATACCAAAGGCATAACAGAGGAGGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGGAAC---------TTATTCAACTTATGTCCTGTGCTAATTTGGAGCTTGGGAAATGGGTATCAAACACACCTCGCATACCAACAGAAGGAACTGA------TTCTACACAATCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................TCAACTTATGTCCTGTGCTAATTTGGAGC.....................................................................................................................................................................................................................................................................................................................29200.05101000
..........................ATGTCCTGTGCTAATTTGGAGCTTG..................................................................................................................................................................................................................................................................................................................25200.05101000
droVir3
ACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ACTTAT---------TGGTTGCACTCATGTCACGTGCGCAATTGGAATTGGGAAAATGGATCTCAAATAGCAAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................CACGTGCGCAATTGGAATTGGGAAA..............................................................................................................................................................................................................................................................................................................25100.101000001
..................................TGCGCAATTGGAATTGGGAAAATGGAC........................................................................................................................................................................................................................................................................................................27100.101000001
...................................GCGCAATTGGAATTGGGAAA..............................................................................................................................................................................................................................................................................................................20110.091000001
............................................GAATTGGGAAAATGGATCTCA....................................................................................................................................................................................................................................................................................................21140.071100000

Generated: 05/18/2015 at 12:03 AM