ID:

dan-mir-9c

 Coordinate:

scaffold_12916:15865474-15865565 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.7 -26.4 -26.3

Flybase annnotation

intron [Dana\GF14005-in]; pre_miRNA [Dana\mir-9c-RM]; utr5 [utr5_plus_2208]; miRNA [Dana\miR-9c-RA]

No Repeatable elements found

Sense Strand Reads

TATAGTATATTTTTTGGTTAACCTTCTCTCCTCACGCACTCCCTTTCATTATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAACAACAACAACAACAACAACAGGAATGATACAA

***********************************************...((((..((((...(((((((((...((((.((((.((....(((.....)))....)))))).))))...)))))))))...))))..))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 M044

female body

 V039

embryo

 V106

head

 V105

male body		 V055

head
..............................................................TCTTTGGTATTCTAGCTGTAGA............................................................................................................ 22 0 1 22707.00 22707 10660 6526 2875 767 1161 718
..............................................................TCTTTGGTATTCTAGCTGTAG............................................................................................................. 21 0 1 21059.00 21059 3719 5713 2620 4104 3203 1700
..............................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 1 1 2580.00 2580 2208 181 173 6 4 8
..............................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 2 1 2257.00 2257 1252 227 766 4 2 6
..............................................................................................................TAAAGCTTTTATACCAAAGCT............................................................. 21 0 1 688.00 688 635 23 10 17 1 2
..............................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................... 23 0 1 620.00 620 322 215 33 14 15 21
..............................................................TGTTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 604.00 604 596 2 4 0 2 0
...............................................................CTTTGGTATTCTAGCTGTAGA............................................................................................................ 21 0 1 600.00 600 26 572 1 1 0 0
...............................................................CTTTGGTATTCTAGCTGTAG............................................................................................................. 20 0 1 519.00 519 10 497 5 2 4 1
..............................................................TCTTTGGTATTCTAGCTGTA.............................................................................................................. 20 0 1 412.00 412 54 135 10 83 91 39
..............................................................TCCTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 280.00 280 267 2 4 2 3 2
..............................................................TCTTTGGTATTCTAGCTGTAT............................................................................................................. 21 1 1 266.00 266 15 4 111 66 51 19
..............................................................TCTTTGGTGTTCTAGCTGTAGA............................................................................................................ 22 1 1 258.00 258 5 246 5 0 2 0
..............................................................TCTTTGGTGTTCTAGCTGTAG............................................................................................................. 21 1 1 248.00 248 3 232 7 1 2 3
..............................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................... 25 3 1 240.00 240 119 60 60 0 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................... 24 1 1 205.00 205 132 21 51 1 0 0
..............................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................ 22 0 1 200.00 200 189 10 1 0 0 0
..............................................................TGTTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 194.00 194 185 1 1 1 5 1
..............................................................TCTTTGGTATTCTAGCTGTATA............................................................................................................ 22 1 1 194.00 194 15 0 151 2 18 8
..............................................................................................................TAAAGCTTTTATACCAAAGC.............................................................. 20 0 1 178.00 178 175 1 2 0 0 0
..............................................................................................................TAAAGCTTTTATACCAAAGCC............................................................. 21 1 1 176.00 176 176 0 0 0 0 0
..............................................................TCTTTGGTATTCTATCTGTAG............................................................................................................. 21 1 1 174.00 174 0 2 77 47 37 11
..............................................................TCTTTGGTATTCTAGCTGTAGT............................................................................................................ 22 1 1 121.00 121 25 24 24 10 15 23
..............................................................TCTTTGGTATTCTATCTGTAGA............................................................................................................ 22 1 1 120.00 120 1 1 86 12 16 4
..............................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................... 24 0 1 120.00 120 45 35 5 12 12 11
..............................................................TGTTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 115.00 115 114 0 1 0 0 0
..............................................................TCTGTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 114.00 114 108 0 4 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAA............................................................................................................. 21 1 1 112.00 112 24 21 12 23 26 6
..............................................................TCTTTGGTATTCTAGCTTTAG............................................................................................................. 21 1 1 112.00 112 4 0 87 3 4 14
..............................................................TCCTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 106.00 106 87 5 2 3 4 5
................................................................TTTGGTATTCTAGCTGTAGA............................................................................................................ 20 0 1 101.00 101 28 53 2 3 14 1
..............................................................TCTCTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 99.00 99 96 0 3 0 0 0
..............................................................TCTTTGGTATTCTAGCTGT............................................................................................................... 19 0 1 98.00 98 22 30 5 9 10 22
..............................................................TCTTTGGTATTCTAGCTGTAC............................................................................................................. 21 1 1 80.00 80 42 0 6 12 12 8
..............................................................TCTTTGGTCTTCTAGCTGTAGA............................................................................................................ 22 1 1 75.00 75 4 60 10 0 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................... 23 1 1 75.00 75 70 1 4 0 0 0
..............................................................TCTTTGGTATTCTAGCTTTAGA............................................................................................................ 22 1 1 70.00 70 1 3 60 2 1 3
..............................................................TCTTTGGAATTCTAGCTGTAGA............................................................................................................ 22 1 1 69.00 69 54 4 3 1 1 6
..............................................................TCTTTTGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 68.00 68 58 2 6 2 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGC............................................................................................................ 22 1 1 66.00 66 31 2 19 0 2 12
..............................................................TATTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 65.00 65 2 1 2 27 22 11
..............................................................TCTTTTGTATTCTAGCTGTAG............................................................................................................. 21 1 1 63.00 63 23 6 18 10 4 2
................................................................TTTGGTATTCTAGCTGTAG............................................................................................................. 19 0 1 61.00 61 6 36 6 7 3 3
..............................................................TCTTTGGTATTCTAGCTGTAGG............................................................................................................ 22 1 1 61.00 61 10 25 14 1 4 7
..............................................................TCTTTGGCATTCTAGCTGTAGA............................................................................................................ 22 1 1 61.00 61 34 6 13 2 0 6
..............................................................TCTTTGGTATTCTAGATGTAG............................................................................................................. 21 1 1 60.00 60 0 1 5 30 15 9
..............................................................TCTTTGGTTTTCTAGCTGTAGA............................................................................................................ 22 1 1 59.00 59 0 56 3 0 0 0
..............................................................TCTTTGGTTTTCTAGCTGTAG............................................................................................................. 21 1 1 58.00 58 0 52 3 1 1 1
..............................................................TCTTTGGTCTTCTAGCTGTAG............................................................................................................. 21 1 1 58.00 58 0 45 4 5 2 2
..............................................................TCTATGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 57.00 57 56 0 0 0 1 0
..............................................................TGTTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 56.00 56 56 0 0 0 0 0
..............................................................TCTTTGGCATTCTAGCTGTAG............................................................................................................. 21 1 1 53.00 53 14 4 11 13 4 7
..............................................................GCTTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 50.00 50 28 14 2 0 1 5
..............................................................TCTTTGTTATTCTAGCTGTAGA............................................................................................................ 22 1 1 50.00 50 34 4 9 2 0 1
..............................................................TCTGTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 49.00 49 44 0 1 0 0 4
..............................................................TTTTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 2 48.50 97 91 2 2 0 2 0
..............................................................TCTTTGGTATTCTAGCTCTAG............................................................................................................. 21 1 1 48.00 48 1 0 26 7 4 10
..............................................................TCTTTGGTATTATAGCTGTAG............................................................................................................. 21 1 1 48.00 48 6 0 4 15 21 2
..............................................................TCCTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 45.00 45 44 0 1 0 0 0
..............................................................TCTTTGGTATTATAGCTGTAGA............................................................................................................ 22 1 1 44.00 44 21 1 1 5 11 5
..............................................................TCTTTGGTATTCTAGCTGTCG............................................................................................................. 21 1 1 43.00 43 0 0 28 1 1 13
..............................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................... 24 2 1 42.00 42 34 0 8 0 0 0
..............................................................TCGTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 40.00 40 0 0 3 27 0 10
..............................................................TCTCTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 39.00 39 25 0 5 2 7 0
..............................................................TCTTTGGTATTCTAGCTG................................................................................................................ 18 0 1 38.00 38 32 1 1 0 0 4
..............................................................GCTTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 37.00 37 14 15 1 0 1 6
..............................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................... 25 2 1 37.00 37 27 2 8 0 0 0
................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................... 22 0 1 37.00 37 11 4 3 12 6 1
..............................................................TCTTTGGTATTCTAGCTGTAGAAT.......................................................................................................... 24 1 1 37.00 37 24 0 9 4 0 0
..............................................................TCTTTGGTATTCTAGCTGTATAAA.......................................................................................................... 24 3 1 37.00 37 3 0 34 0 0 0
.................................................................TTGGTATTCTAGCTGTAGA............................................................................................................ 19 0 1 36.00 36 21 12 1 1 1 0
.............................................................CTCTTTGGTATTCTAGCTGTAGA............................................................................................................ 23 1 1 35.00 35 24 6 4 0 0 1
..............................................................TCTTTGGTATTCTAGCTGTAAA............................................................................................................ 22 1 1 32.00 32 12 2 9 1 8 0
...............................................................CTTTGGTAGTCTAGCTGTAGA............................................................................................................ 21 1 1 32.00 32 0 32 0 0 0 0
..............................................................TCTGTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 31.00 31 31 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTTG............................................................................................................. 21 1 1 30.00 30 4 0 14 1 0 11
..............................................................TCTTTGGTATTCTAGCTGCAG............................................................................................................. 21 1 1 29.00 29 2 0 12 3 2 10
..............................................................TCTTTGGTATTCTAGTTGTAGA............................................................................................................ 22 1 1 29.00 29 23 0 3 1 1 1
...............................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................... 22 1 1 29.00 29 9 20 0 0 0 0
..............................................................................................................TGAAGCTTTTATACCAAAGCT............................................................. 21 1 1 29.00 29 29 0 0 0 0 0
..............................................................TCTTTGGAATTCTAGCTGTAG............................................................................................................. 21 1 1 28.00 28 11 5 1 0 2 9
..............................................................TCTTTGGGATTCTAGCTGTAG............................................................................................................. 21 1 2 27.00 54 3 9 7 0 3 32
............................................................................................................TCTAAAGCTTTTATACCAAAGCT............................................................. 23 0 1 27.00 27 25 1 0 1 0 0
..............................................................TCTTTGTTATTCTAGCTGTAG............................................................................................................. 21 1 1 27.00 27 10 4 7 4 0 2
.............................................................................................................CTAAAGCTTTTATACCAAAGCT............................................................. 22 0 1 27.00 27 27 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTACA............................................................................................................ 22 1 1 27.00 27 0 2 11 4 7 3
..............................................................TCTCTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 26.00 26 26 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGATAAA........................................................................................................ 26 3 1 26.00 26 14 4 8 0 0 0
..............................................................TATTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 26.00 26 3 1 4 6 4 8
..............................................................TCTTTGGGATTCTAGCTGTAGA............................................................................................................ 22 1 2 25.50 51 18 4 12 0 1 16
..............................................................TCTTTGGTATTCAAGCTGTAG............................................................................................................. 21 1 1 25.00 25 2 1 1 0 21 0
..............................................................CCTTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 25.00 25 8 4 5 2 2 4
..............................................................TCTTTGGTATTCTACCTGTAG............................................................................................................. 21 1 1 25.00 25 2 1 10 2 5 5
..............................................................TCTTTGGTATTCTAGATGTAGA............................................................................................................ 22 1 1 24.00 24 0 1 4 9 6 4
..............................................................TCTTTGGTATTCTAGCTGGAG............................................................................................................. 21 1 1 24.00 24 3 0 12 1 0 8
..............................................................TGTTTGGTATTCTAGCTGTAGAT........................................................................................................... 23 1 1 24.00 24 24 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................... 23 1 1 24.00 24 10 5 5 3 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................... 24 2 1 23.00 23 17 2 4 0 0 0
..............................................................TCTTCGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 23.00 23 3 4 2 3 7 4
..............................................................TCTTTGGTATTCTCGCTGTAG............................................................................................................. 21 1 1 23.00 23 0 1 9 2 4 7
..............................................................TCTTTGGTATTCTAGCTATAG............................................................................................................. 21 1 1 22.00 22 3 0 6 5 4 4
..............................................................TTTTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 2 22.00 44 29 1 2 3 5 4
..............................................................TCTTTGGTATTCTAGCTGTGG............................................................................................................. 21 1 1 22.00 22 3 2 4 6 1 6
..............................................................TCTTTGGTATTCTATCTGTAGAAA.......................................................................................................... 24 3 1 21.00 21 0 0 21 0 0 0
..............................................................CCTTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 21.00 21 17 1 1 1 0 1
...............................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................... 22 0 1 21.00 21 4 17 0 0 0 0
..............................................................................................................TAATGCTTTTATACCAAAGCT............................................................. 21 1 1 20.00 20 20 0 0 0 0 0
..............................................................ACTTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 20.00 20 16 4 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTTGA............................................................................................................ 22 1 1 20.00 20 11 0 6 0 0 3
..............................................................TCTTTGGTACTCTAGCTGTAG............................................................................................................. 21 1 1 19.00 19 1 4 2 5 4 3
..............................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................... 24 2 1 19.00 19 11 1 7 0 0 0
..............................................................TCTTTGGTATTCTAGCTTTATA............................................................................................................ 22 2 1 19.00 19 0 0 19 0 0 0
..............................................................TCTTTGGTATTCTAGCTTTAT............................................................................................................. 21 2 2 19.00 38 0 0 35 0 0 3
..............................................................TCTTTGGTATTCTAGCTGGAGA............................................................................................................ 22 1 1 19.00 19 6 0 11 0 0 2
..............................................................TCTTTGGTATTCTATCTGTAT............................................................................................................. 21 2 2 19.00 38 0 0 20 14 4 0
..............................................................TCTTTGGTATTCTATCTGTATA............................................................................................................ 22 2 1 19.00 19 0 0 18 1 0 0
..............................................................TCTTTTGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 19.00 19 19 0 0 0 0 0
..............................................................TCTTTGGTATTCTGGCTGTAG............................................................................................................. 21 1 1 19.00 19 2 1 1 5 5 5
..............................................................TCTTCGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 18.00 18 10 3 3 1 1 0
...............................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 23 2 1 18.00 18 3 15 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTCTAGA............................................................................................................ 22 1 1 18.00 18 1 1 13 0 2 1
..............................................................TCTTTGGTATTCTAGTTGTAG............................................................................................................. 21 1 1 18.00 18 9 1 1 2 4 1
..............................................................TCTTTGGTATTCTACCTGTAGA............................................................................................................ 22 1 1 17.00 17 4 1 7 1 2 2
............................................................................................................TCTAAAGCTTTTATACCAAAGC.............................................................. 22 0 1 17.00 17 16 0 0 0 1 0
..............................................................TCTTTGGTATTCTAGCTGTGGA............................................................................................................ 22 1 1 17.00 17 1 8 5 1 0 2
..............................................................TCTATGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 16.00 16 12 0 0 0 4 0
....................................................................................TTGTTTCACGCACATTGTATATCATC.................................................................................. 26 0 1 16.00 16 9 7 0 0 0 0
..............................................................TCTTTGGTATTCTAGCCGTAG............................................................................................................. 21 1 1 16.00 16 0 5 5 3 0 3
..............................................................TCCTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 2 15.00 30 29 0 1 0 0 0
..............................................................TCTTTGGTATTCCAGCTGTAG............................................................................................................. 21 1 1 15.00 15 0 3 1 1 7 3
..............................................................TCTTTGGTACTCTAGCTGTAGA............................................................................................................ 22 1 1 15.00 15 6 1 4 1 1 2
..............................................................TCTTTGGTATTCTAGCTGCAGA............................................................................................................ 22 1 1 15.00 15 3 4 5 2 0 1
..............................................................TCTGTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 15.00 15 15 0 0 0 0 0
..............................................................TCTTTGGTATTGTAGCTGTAG............................................................................................................. 21 1 1 15.00 15 0 1 1 3 10 0
..............................................................TCTATGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 15.00 15 15 0 0 0 0 0
...............................................................CTTTGGTAATCTAGCTGTAG............................................................................................................. 20 1 1 15.00 15 0 15 0 0 0 0
..............................................................TCTTTGGTATTCTATCTTTAG............................................................................................................. 21 2 1 15.00 15 0 0 14 1 0 0
..............................................................TCTTTGGTATTCTAGCCGTAGA............................................................................................................ 22 1 1 15.00 15 5 2 6 0 0 2
...............................................................CTTTGGTAGTCTAGCTGTAG............................................................................................................. 20 1 1 14.00 14 0 14 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTCGA............................................................................................................ 22 1 1 14.00 14 0 1 12 0 1 0
..............................................................TCTTTAGTATTCTAGCTGTAG............................................................................................................. 21 1 1 14.00 14 1 2 3 5 2 1
..............................................................TCTTTGGTATTCCAGCTGTAGA............................................................................................................ 22 1 1 14.00 14 3 3 5 1 2 0
.............................................................CTCTTTGGTATTCTAGCTGTAG............................................................................................................. 22 1 1 13.00 13 4 2 3 0 0 4
..............................................................ACTTTGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 13.00 13 4 5 1 0 1 2
..............................................................TCTTTCGTATTCTAGCTGTAG............................................................................................................. 21 1 1 13.00 13 1 4 3 4 1 0
..............................................................TCTTTGGTATTTTAGCTGTAG............................................................................................................. 21 1 1 13.00 13 7 0 0 0 6 0
..............................................................TTTTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 2 12.50 25 25 0 0 0 0 0
..............................................................TCTTTAGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 12.00 12 8 1 2 0 0 1
...............................................................CTTTGGTAATCTAGCTGTAGA............................................................................................................ 21 1 1 12.00 12 0 12 0 0 0 0
..............................................................TCTTTGGTATTCTATCTTTAGA............................................................................................................ 22 2 1 12.00 12 0 0 12 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGTT........................................................................................................... 23 1 1 11.00 11 1 4 0 2 1 3
..............................................................TCGTTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 11.00 11 2 0 3 2 0 4
...............................................................CTTTGGTATTCTAGCTGTA.............................................................................................................. 19 0 1 11.00 11 0 11 0 0 0 0
..............................................................TCTTTGGAATTCTAGCTGTAGAA........................................................................................................... 23 2 1 11.00 11 11 0 0 0 0 0
..............................................................TCTTTGGTATCCTAGCTGTAGA............................................................................................................ 22 1 1 10.00 10 3 3 3 0 1 0
.............................................................CTCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 25 3 1 10.00 10 5 1 4 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................... 25 3 1 10.00 10 9 0 1 0 0 0
................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................... 21 1 1 10.00 10 6 3 1 0 0 0
..............................................................TCTTTGGTATTTTAGCTGTAGA............................................................................................................ 22 1 1 10.00 10 8 0 0 0 2 0
............................................................................................................TCTAAAGCTTTTATACCAAAGCC............................................................. 23 1 1 10.00 10 10 0 0 0 0 0
..............................................................TCTTTGGTATTCTAACTGTAGA............................................................................................................ 22 1 1 10.00 10 1 0 8 0 1 0
..............................................................TCTTTGTTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 10.00 10 9 0 1 0 0 0
..............................................................TCTTTGGTAATCTAGCTGTA.............................................................................................................. 20 1 2 9.50 19 0 18 0 0 1 0
..............................................................TCTTTGGTATTCTAGCTTTAGAAA.......................................................................................................... 24 3 1 9.00 9 1 0 8 0 0 0
..................................................................TGGTATTCTAGCTGTAGA............................................................................................................ 18 0 1 9.00 9 4 3 2 0 0 0
..............................................................TCTTTCGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 9.00 9 1 4 1 2 0 1
..............................................................TCTTTGGCATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 9.00 9 4 1 4 0 0 0
..............................................................TCTTTGGTATTCTGGCTGTAGA............................................................................................................ 22 1 1 9.00 9 4 1 3 0 1 0
..............................................................TCTTTGGTATCCTAGCTGTAG............................................................................................................. 21 1 1 9.00 9 0 0 3 1 4 1
..............................................................TCTTTGATATTCTAGCTGTAG............................................................................................................. 21 1 1 9.00 9 0 0 3 2 2 2
..............................................................TCTTTGGTATTCTAGCTGTT.............................................................................................................. 20 1 1 9.00 9 0 5 0 1 3 0
...............................................................TCTTGGTATTCTAGCTGTAG............................................................................................................. 20 2 2 8.00 16 1 6 1 1 7 0
..............................................................TCTTTGGTATTCTAGCTGTATAA........................................................................................................... 23 2 1 8.00 8 3 0 4 0 1 0
..............................................................TCTCTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 8.00 8 6 1 1 0 0 0
..............................................................TCTTTGATATTCTAGCTGTAGA............................................................................................................ 22 1 1 8.00 8 1 2 2 0 3 0
..............................................................TCTTTTGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 8.00 8 7 0 1 0 0 0
..............................................................TCTATGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 8.00 8 8 0 0 0 0 0
..............................................................TCTTTGCTATTCTAGCTGTAGA............................................................................................................ 22 1 1 8.00 8 0 2 2 0 2 2
..............................................................TCCTTGGTATTCTAGCTGTAGAT........................................................................................................... 23 1 1 8.00 8 7 0 0 0 0 1
..............................................................TCTTTGGTATTCTAGCTATAGA............................................................................................................ 22 1 1 8.00 8 3 2 3 0 0 0
..............................................................................................................TGAAGCTTTTATACCAAAGCC............................................................. 21 2 1 8.00 8 8 0 0 0 0 0
..............................................................TCTTTGGTATTCAAGCTGTAGA............................................................................................................ 22 1 1 8.00 8 4 1 1 0 2 0
..............................................................TCTTTGGCATTCTAGCTGTAGAA........................................................................................................... 23 2 1 8.00 8 6 0 2 0 0 0
..............................................................GCTTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 8.00 8 6 2 0 0 0 0
..............................................................TCTTTGGTGTTCTAGCTGTA.............................................................................................................. 20 1 1 8.00 8 0 8 0 0 0 0
..............................................................TCTTTGGTATTCTAGCGGTAGA............................................................................................................ 22 1 1 8.00 8 5 1 1 0 0 1
..............................................................TCTTTGGTATTCTAGCTAG............................................................................................................... 19 2 1 7.00 7 0 3 0 2 2 0
..............................................................TCTTTGGTATTCTAGCTTTAGAA........................................................................................................... 23 2 1 7.00 7 3 0 4 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGCA........................................................................................................... 23 2 1 7.00 7 1 0 5 0 0 1
..............................................................TCTTTGGTATTCTAGCTGTCT............................................................................................................. 21 2 1 7.00 7 0 0 3 0 0 4
..............................................................TCTTTGGTATTCTAGCTAGA.............................................................................................................. 20 2 1 7.00 7 3 2 0 1 1 0
..............................................................TCTTTGGTATTCTAGCTGAAGA............................................................................................................ 22 1 1 7.00 7 5 0 2 0 0 0
..............................................................TCTTTGGTATTCTCGCTGTAGA............................................................................................................ 22 1 1 7.00 7 0 0 6 0 1 0
................................................................TGTGGTATTCTAGCTGTAGA............................................................................................................ 20 1 1 7.00 7 7 0 0 0 0 0
..............................................................TCTTTGGTATTATAGCTGTAGAA........................................................................................................... 23 2 1 7.00 7 7 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCGGTAG............................................................................................................. 21 1 1 7.00 7 2 0 5 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGAAAG......................................................................................................... 25 2 1 7.00 7 6 1 0 0 0 0
.............................................................................................................CTAAAGCTTTTATACCAAAGCC............................................................. 22 1 1 7.00 7 7 0 0 0 0 0
..............................................................................................................TGAAGCTTTTATACCAAAGCTC............................................................ 22 1 1 7.00 7 7 0 0 0 0 0
..............................................................TCTTTGGTATTCTTGCTGTAGA............................................................................................................ 22 1 1 7.00 7 4 0 2 0 1 0
..............................................................TCTTTGGTATACTAGCTGTAG............................................................................................................. 21 1 1 7.00 7 0 0 0 0 6 1
..............................................................TCTTTGGTATTCTAGCTGC............................................................................................................... 19 1 1 7.00 7 7 0 0 0 0 0
.............................................................GTCTTTGGTATTCTAGCTGTAGA............................................................................................................ 23 1 1 7.00 7 0 7 0 0 0 0
..............................................................TCTTAGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 7.00 7 4 2 1 0 0 0
..............................................................TCTTTGGTATTCGAGCTGTAGA............................................................................................................ 22 1 1 7.00 7 0 3 1 0 1 2
.................................................................TTGGTATTCTAGCTGTAG............................................................................................................. 18 0 1 7.00 7 2 3 0 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................... 24 2 1 7.00 7 4 0 3 0 0 0
..............................................................TCTTTTGTATTCTAGCTTTAGA............................................................................................................ 22 2 1 6.00 6 1 0 5 0 0 0
..............................................................TCTTGGGTATTCTAGCTGTAG............................................................................................................. 21 1 1 6.00 6 0 0 2 0 1 3
..............................................................TCTTTGGTATACTAGCTGTAGA............................................................................................................ 22 1 1 6.00 6 1 1 0 0 4 0
..............................................................TCTTTGGTGTTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 6.00 6 0 5 1 0 0 0
..............................................................TCTTTGGTATTGTAGCTGTAGA............................................................................................................ 22 1 1 6.00 6 1 1 0 0 4 0
..............................................................TCTTTGGTATTCGAGCTGTAG............................................................................................................. 21 1 1 6.00 6 0 0 0 1 5 0
..............................................................TCTTTGGTATTCTAGCTGTTGAA........................................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0
..............................................................TCTTTGTTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 6.00 6 1 1 4 0 0 0
..............................................................TCTTTGGTAGTCTAGCTGTAG............................................................................................................. 21 1 1 6.00 6 2 0 2 0 0 2
..............................................................TCTTTGGTATGCTAGCTGTAG............................................................................................................. 21 1 1 6.00 6 0 0 1 0 4 1
..............................................................TCTTTGGTGTTCTAGCTGTAGAT........................................................................................................... 23 1 1 6.00 6 0 6 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAAAA........................................................................................................... 23 2 1 6.00 6 4 1 1 0 0 0
................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 22 2 1 6.00 6 2 1 3 0 0 0
..............................................................TGTTTGGTATTCTAGCTGTAGATA.......................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..............................................................................................................TAATGCTTTTATACCAAAGCC............................................................. 21 2 1 6.00 6 6 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGCAA.......................................................................................................... 24 3 2 5.50 11 2 0 9 0 0 0
.............................................................CTCTTTGGTATTCTAGCTGTAGAA........................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
....................................................................................TTGTTTCACGCACATTGTATATC..................................................................................... 23 0 1 5.00 5 4 1 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................... 24 1 1 5.00 5 3 1 1 0 0 0
..............................................................TCTGTGTTATTCTAGCTGTAGA............................................................................................................ 22 2 1 5.00 5 5 0 0 0 0 0
.................................................................TTGGTATTCTAGCTGTAGAA........................................................................................................... 20 1 1 5.00 5 4 1 0 0 0 0
..............................................................................................................TAAAGCTTTTATACCAAAG............................................................... 19 0 1 5.00 5 1 0 1 2 1 0
..............................................................TCTTTGGTATTCTAGGTGTAG............................................................................................................. 21 1 1 5.00 5 0 0 1 0 4 0
...............................................................TCTTTGTATTCTAGCTGTAGA............................................................................................................ 21 3 3 5.00 15 4 9 1 1 0 0
..............................................................TCTTTGGTATTCTATCTGTAGAA........................................................................................................... 23 2 1 5.00 5 1 0 4 0 0 0
...............................................................CGTTGGTATTCTAGCTGTAGA............................................................................................................ 21 1 1 5.00 5 5 0 0 0 0 0
..............................................................TCTTTGGTATTCTTGCTGTAG............................................................................................................. 21 1 1 5.00 5 0 1 1 0 1 2
..............................................................TCTTTGGTATTCTAGCTGTATC............................................................................................................ 22 2 1 5.00 5 0 1 2 0 0 2
..............................................................TCTTTGGTATTCTAGCTGTATT............................................................................................................ 22 2 1 5.00 5 0 2 1 1 0 1
..............................................................TCTTTGTTATTCTAGCTGTAGC............................................................................................................ 22 2 1 5.00 5 4 0 1 0 0 0
..............................................................ACTTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 2 1 5.00 5 4 1 0 0 0 0
..............................................................TCTTTGGTATTCTAACTGTAG............................................................................................................. 21 1 1 5.00 5 1 1 1 2 0 0
...............................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................... 23 0 1 5.00 5 1 4 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGTAA.......................................................................................................... 24 3 1 5.00 5 0 0 5 0 0 0
..............................................................TCTTTGCTATTCTAGCTGTAG............................................................................................................. 21 1 1 5.00 5 0 1 1 2 0 1
...............................................................CTTTGGTACTCTAGCTGTAG............................................................................................................. 20 1 1 5.00 5 0 5 0 0 0 0
..............................................................TGTTTGGTATTCTAGCTGTAGAAT.......................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
.............................................................................................................CTAAAGCTTTTATACCAAAGC.............................................................. 21 0 1 5.00 5 5 0 0 0 0 0
..............................................................................................................TTAAGCTTTTATACCAAAGCT............................................................. 21 1 1 5.00 5 5 0 0 0 0 0
..............................................................TCTTTGTTATTCTATCTGTAGA............................................................................................................ 22 2 1 5.00 5 0 0 4 1 0 0
..............................................................................................................TGAAGCTTTTATACCAAAGC.............................................................. 20 1 1 5.00 5 5 0 0 0 0 0
..............................................................TCTTTGGTATTCTATCTGTCG............................................................................................................. 21 2 1 4.00 4 0 0 3 1 0 0
..............................................................TCCTTGGAATTCTAGCTGTAGA............................................................................................................ 22 2 1 4.00 4 3 0 1 0 0 0
...............................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................... 24 3 1 4.00 4 0 4 0 0 0 0
...............................................................CTTTGGTACTCTAGCTGTAGA............................................................................................................ 21 1 1 4.00 4 0 4 0 0 0 0
...............................................................TCTTGGTATTCTAGCTGTAGA............................................................................................................ 21 2 2 4.00 8 4 3 0 0 1 0
..............................................................TCATTGGTATTCTAGCTGTAGA............................................................................................................ 22 1 1 4.00 4 1 0 1 0 2 0
..........................................................GATCTCTTTGGTATTCTAGCTGTAGA............................................................................................................ 26 3 1 4.00 4 4 0 0 0 0 0
................................................................TGTGGTATTCTAGCTGTAGATT.......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..............................................................TGCTTGGTATTCTAGCTGTAGAA........................................................................................................... 23 3 1 4.00 4 4 0 0 0 0 0
..............................................................TGCTTGGTATTCTAGCTGTAGA............................................................................................................ 22 2 1 4.00 4 4 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTCTA............................................................................................................ 22 2 1 4.00 4 0 0 3 0 0 1
.............................................................TTCTTTGGTATTCTAGCTGTAGA............................................................................................................ 23 0 1 4.00 4 0 4 0 0 0 0
..............................................................TCTTTGGTGTTCTAGCTGTAGAA........................................................................................................... 23 2 1 4.00 4 0 3 1 0 0 0
.............................................................CGCTTTGGTATTCTAGCTGTAGA............................................................................................................ 23 2 1 4.00 4 4 0 0 0 0 0
..............................................................TTTTTGGTATTCTAGCTGTAGAT........................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTCTAT............................................................................................................. 21 2 1 4.00 4 0 0 4 0 0 0
................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................... 21 0 1 4.00 4 3 1 0 0 0 0
..............................................................CCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0
..............................................................GCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................... 24 3 1 4.00 4 3 0 1 0 0 0
..............................................................TTTTTGGTATTCTAGCTGTAGATA.......................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..............................................................TCTTTGGTATTCTGGCTGTAGAA........................................................................................................... 23 2 1 4.00 4 3 1 0 0 0 0
..............................................................TCTTTGGTCTTCTAGCTGTAGAT........................................................................................................... 23 1 1 4.00 4 1 3 0 0 0 0
..............................................................CCTTTGGTATTCTAGCTGTAGAT........................................................................................................... 23 1 1 4.00 4 2 1 1 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTATAT........................................................................................................... 23 1 1 4.00 4 1 0 2 0 0 1
..............................................................TCTTTGGTGTTCGAGCTGTAGA............................................................................................................ 22 2 1 4.00 4 0 4 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTCGAAA.......................................................................................................... 24 3 1 4.00 4 0 1 3 0 0 0
..............................................................TCTTTGGTATTCTAGCAGTAGA............................................................................................................ 22 1 1 4.00 4 2 1 0 1 0 0
..............................................................................................................GAAAGCTTTTATACCAAAGCT............................................................. 21 1 1 4.00 4 4 0 0 0 0 0
..............................................................TCTTTTGTATTCTAGCTGTAGATA.......................................................................................................... 24 2 1 4.00 4 3 0 1 0 0 0
...............................................................CTTTGGTAGTCTAGCTGTAGAT........................................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0
..............................................................TCTCTGGTATTCTAGCTGTAGAT........................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTGA............................................................................................................. 21 2 1 3.00 3 0 2 0 1 0 0
..............................................................................................................TAAAGCTTTTATCCCAAAGCT............................................................. 21 1 1 3.00 3 3 0 0 0 0 0
..............................................................TCTTTGGTATTCTAACTCTAG............................................................................................................. 21 2 1 3.00 3 0 0 3 0 0 0
..............................................................TCTTTGGTATTCTAGCTTTCG............................................................................................................. 21 2 1 3.00 3 0 0 3 0 0 0
..............................................................TCTTTGGTATTCTAGCTGAAG............................................................................................................. 21 1 1 3.00 3 2 0 0 0 0 1
..............................................................TCTTTTGTATTCTAGCTGTAT............................................................................................................. 21 2 1 3.00 3 0 0 3 0 0 0
..............................................................TCTCTGGTATTCTAGCTGTAGAC........................................................................................................... 23 2 1 3.00 3 3 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCCGTAT............................................................................................................. 21 2 1 3.00 3 0 0 2 1 0 0
..............................................................TCTTTGGTAGTCTAGCTGTAGA............................................................................................................ 22 1 1 3.00 3 1 0 1 0 0 1
..............................................................TCTTTGGTATTCTAGCTGCAGAAA.......................................................................................................... 24 3 1 3.00 3 1 1 1 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................... 23 2 1 3.00 3 0 2 1 0 0 0
..............................................................TCTTTGGTATTCTGGCTATAG............................................................................................................. 21 2 1 3.00 3 0 0 1 0 2 0
.............................................................................................................CTAAAGCTTTTATACCAAAGCTC............................................................ 23 0 1 3.00 3 3 0 0 0 0 0
..............................................................TCTTTGGTATTCTAGCTGTTT............................................................................................................. 21 2 1 3.00 3 1 1 1 0 0 0
...............................................................GTTTGGTATTCTAGCTGTAG............................................................................................................. 20 1 1 3.00 3 0 3 0 0 0 0
...............................................................GTTTGGTATTCTAGCTGTAGA............................................................................................................ 21 1 1 3.00 3 0 3 0 0 0 0
..............................................................TCTTTGGTATTCTATCTGTA.............................................................................................................. 20 1 1 3.00 3 0 0 0 2 1 0
..............................................................................................................AAAAGCTTTTATACCAAAGCT............................................................. 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................................CGAAAGCTTTTATACCAAAGCT............................................................. 22 1 1 3.00 3 3 0 0 0 0 0
..............................................................TCTTTGGTCTTCTAGCTGTAGAA........................................................................................................... 23 2 1 3.00 3 2 1 0 0 0 0
..............................................................TCTTTGGCATTCTAGCTGTA.............................................................................................................. 20 1 1 3.00 3 1 0 0 0 1 1
..............................................................TCTTTGGTATTCTAGCAGTAG............................................................................................................. 21 1 1 3.00 3 1 0 0 1 0 1

Anti-sense strand reads

ATATCATATAAAAAACCAATTGGAAGAGAGGAGTGCGTGAGGGAAAGTAATAAAAACGACAAAGAAACCATAAGATCGACATCTAACAAAGTGCGTGTAACATATAGTAGATTTCGAAAATATGGTTTCGAGGTCGAATTTAACGAATTGTTGCGTGGTTGTTGTTGTTGTTGTTGTTGTCCTTACTATGTT

**********************************************...((((..((((...(((((((((...((((.((((.((....(((.....)))....)))))).))))...)))))))))...))))..))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V055

head

 V106

head

 M044

female body

 V105

male body
..........................AGAGGAGTGCGTGAGGGAAAG................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
.................................................................................................................TCGAGAAGATGGTGTCGAGGT.......................................................... 21 3 1 1.00 1 0 1 0 0 0
....................................................AAAACGACAAAGAAACAATA........................................................................................................................ 20 1 2 0.50 1 1 0 0 0 0
.........................................AGAAAGTATTCAAAACGACAAAG................................................................................................................................ 23 3 2 0.50 1 0 0 0 0 1
.......................................................................AAGATCAACACCTAACAAA...................................................................................................... 19 2 3 0.33 1 1 0 0 0 0
..........................................................ACAAAGAAACCGGAAGATCGC................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0
....................................................CAAGCGACAAAGAAACCACAAG...................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0
...................................................................CCATTAGATCGACGTCTA........................................................................................................... 18 2 6 0.17 1 1 0 0 0 0
....................................GTGGGGGAAAGTAATTAA.......................................................................................................................................... 18 2 9 0.11 1 0 0 0 1 0
......................................................................................................................................CGAATTTCACGAAATGTT........................................ 18 2 12 0.08 1 0 0 0 1 0
................................................AAAAAAAACGACAAAGAAA............................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0
.....................................TGGGGGAAAGTAATTAA.......................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................TTGTTGTTGTTGTTGTTG............. 18 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................TGGTTGTTGTTGTTGTTGTT................. 20 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................GTTGTTGTTGTTGTTGTTGT............ 20 0 20 0.05 1 0 0 0 1 0
.......................................AGGGAAACTAACAAGAACGA..................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12916:15865424-15865615 - dan-mir-9c Known_mirbase TA-----------------TAGT--ATATTTTTT-------GGTTAACCTTCTCTCCTC-ACG----CA--CT------------CCCTTTCATTAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACAA-CAA---C---AACAA----------------------CAAC---AACAG---GA-ATGATACAA
droBip1 scf7180000396717:104147-104361 - AT---------------------ATATATTTTTT-------GGTTCACTCT-TCTCCTCACCG----CA--CCTCCTTCTACTTTT---TTCATTAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTCA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------ACCAAACAA---C---AACAACA------ACAACAAATATATATAT------ATGCTATAA---TTAATA
droKik1 scf7180000302382:528719-528896 + A----------------------------TATT--------T-------TT-CCTCCTC-TCGCTCGCA--CT------------CTC-TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CAC-ACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAAACAACGCA------------CC--------AGCAA-CAA---T---AAAAACC------ACAACAAA-------------AA------------TTACAG
droFic1 scf7180000454078:623475-623651 + TA-----------------T---------TCTTTGGTTCTATGCTCGCATT-TCTCCTC-TCG----CA--CT------------T---CTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTACAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGAAA-CAA-------AACAG----------------------CCACAATA-----------------AA
droEle1 scf7180000490579:646054-646210 - T-------------------------------------------------T-TTTCCTC-TCG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGCAA-CAA---A---AAAA-----------------------AAACAAAA--------------AACAA
droRho1 scf7180000768553:8824-8998 + TA-----------------TTCT--CTTTTTTTCGGTTTAATGCTCACATT-TCTCCTC-TCG----CA--CT------------T---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGCAA-CAA---A---AACAG-------------------------------------------------
droBia1 scf7180000301468:857457-857606 + T-------------------------------------------------T-TCTCCTC-TTG----CA--CT------------A---CTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CACGACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGCTACCAA---C---CTCAG------------------------------------------------A
droTak1 scf7180000415914:422135-422287 + T-------------------------------------------------T-TCTCCTC-CTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CA--------AGCAA-AAA---C-CAAACAG----------------------CCAC---------------------AA
droEug1 scf7180000408961:271816-271965 + T-------------------------------------------------T-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATAGCTTAAGCAACGCA------------CC--------AGAAA-CAA---C---AACAG----------------------CCAC-----------------------
dm3 chr2L:16697888-16698024 + dme-mir-9c Known_mirbase T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CA-------------------------------------------------------------------------------------------------
droSim2 2l:16264685-16264837 + dsi_273 confident T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACCC---A---A-------------------------------------------------------AA
droSec2 scaffold_7:344871-345038 + dse-mir-9c Known_mirbase T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACCC---A---A---AACAG----------------------CCACA---A------------ATACAG
droYak3 2R:4405044-4405204 - dya-mir-9c Known_mirbase T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAGCGCA------------CC--------AACCA---A---A---AACAG----------------------CCAC----------------------A
droEre2 scaffold_4845:19767499-19767652 + der-mir-9c Known_mirbase T----------------------------TCTT--------TGCTCACATT-TCTCCTA-TTG----CA--CC------------T---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACCA-AAA-----------------------------------------------------------AA
dp5 4_group3:8443186-8443336 + dps-mir-9c Known_mirbase T----------------------------------------------------CTCCT----------------------------------TTAAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACAA-CAA---C---AACAA---CAG----------------T------AACTACAG----TAATCAGA
droPer2 scaffold_1:9894308-9894458 + dpe-mir-9c Known_mirbase T----------------------------------------------------CTCCT----------------------------------TTAAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACAA-CAA---C---AACAG----------------------TAAC------TACAGTA-ATCAGAAAA
droWil2 scf2_1100000004874:30463-30674 - dwi-mir-9c-1 TT-----------------TTCCACATTTTC-TTCCTCC-------------CCTCTTCACCA----TC--TTTTCCTCTCCCTCC---ATCATCATTTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGC-CAACGCA------------CCCC------AAAAA-CAA---AATAAAATGCAACAAAA-------TA----ATAA------CTG---TACACAATATTA
droVir3 scaffold_12963:12863796-12863955 - dvi-mir-9c Known_mirbase CA-----------------------------------------------------------CACACACA--CA------------A---TT-TTCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------TACAGTTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGC-CACCGCCC--------GCACC--------CG---CCAACATC---AGCATCAACAAAA--------------A--CA---A------------AGACAA
droMoj3 scaffold_6500:7201283-7201484 + dmo-mir-9c Known_mirbase TACAATATATAACTCACTGTTCTATATGTTTTT--------TG--------------TC-TCACCCACACAATTGCCA-------CTC-TT--TCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------CACATATTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGA-CACCGCCCAACCGCTCGCACA--------ATCCGCCAA---C---ATCAG-----------------------------------------TAAAACAA
droGri2 scaffold_14978:830202-830380 + dgr-mir-9c Known_mirbase --------------------------------------------------------------G----CA--AT------------T---TCTTTCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CT------ATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGC-CACCGCCT--------GCACCCCGCCACCAACA----G---C---AACAGCAACAAAAACAACAAAA----CTAG------CTGCAATGGATAACGTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TA-----------------TAGT--ATATTTTTT-------GGTTAACCTTCTCTCCTC-ACG----CA--CT------------CCCTTTCATTAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACAA-CAA---C---AACAA----------------------CAAC---AACAG---GA-ATGATACAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22122707.002270765261066028757181161767
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21121059.0021059571337192620170032034104
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2312580.0025801812208173846
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2412257.0022572271252766624
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................211688.0068823635102117
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................231620.0062021532233211514
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................211600.00600572261001
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................201519.00519497105142
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201412.004121355410399183
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211266.00266415111195166
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251240.002406011960100
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................241205.002052113251001
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................221200.00200101891000
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................201178.0017811752000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCC......................................................................................................................211176.0017601760000
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221121.00121242524231510
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................241120.0012035455111212
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................211112.0011221241262623
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................201101.00101532821143
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................19198.00983022522109
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................21180.0080042681212
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................23175.00751704000
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22166.0066231191220
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................19161.00613666337
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................22161.0061251014741
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24142.00420348000
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18138.00381321400
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25137.00372278000
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................22137.003741131612
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19136.003612211011
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22129.00292090000
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................23127.00271250001
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................22127.00270270000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................26126.00264148000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23124.00245105013
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................24123.00232174000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22121.00211740000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................24119.00191117000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................23118.00181530000
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGC.......................................................................................................................22117.00170160010
..................................................................................................................................TTGTTT-CA---CGCACATTGTATATCATC...........................................................................................................................................26116.0016790000
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................19111.00111100000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................25110.0010091000
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................21110.0010361000
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCC......................................................................................................................23110.00100100000
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................1819.009342000
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................2019.009500031
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................1917.007300022
............................................................................................................TCTTTGGTATTCTAGCTGTAGCA........................................................................................................................................................................2317.007015100
............................................................................................................TCTTTGGTATTCTAGCTGTCT..........................................................................................................................................................................2117.007003400
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCC......................................................................................................................2217.007070000
............................................................................................................TCTTTGGTATTCTAGCTGC............................................................................................................................................................................1917.007070000
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................1817.007320011
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................2417.007043000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2216.006123000
............................................................................................................TCTTTGGTATTCTAGCTGTAGCAA.......................................................................................................................................................................2425.5011029000
..................................................................................................................................TTGTTT-CA---CGCACATTGTATATC..............................................................................................................................................2315.005140000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2415.005131000
...............................................................................................................TTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2015.005140000
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................1915.005011012
............................................................................................................TCTTTGGTATTCTAGCTGTATC.........................................................................................................................................................................2215.005102200
............................................................................................................TCTTTGGTATTCTAGCTGTATT.........................................................................................................................................................................2215.005201101
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2315.005410000
............................................................................................................TCTTTGGTATTCTAGCTGTAGTAA.......................................................................................................................................................................2415.005005000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGC.......................................................................................................................2115.005050000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................2414.004400000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2314.004400000
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2114.004130000
............................................................................................................TCTTTGGTATTCTAGCTGTGA..........................................................................................................................................................................2113.003200001
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................2313.003201000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCTC.....................................................................................................................2313.003030000
............................................................................................................TCTTTGGTATTCTAGCTGTTT..........................................................................................................................................................................2113.003111000
droBip1
AT---------------------ATATATTTTTT-------GGTTCACTCT-TCTCCTCACCG----CA--CCTCCTTCTACTTTT---TTCATTAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTCA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------ACCAAACAA---C---AACAACA------ACAACAAATATATATAT------ATGCTATAA---TTAATASizeHit CountTotal NormTotal
No Reads
droKik1
A----------------------------TATT--------T-------TT-CCTCCTC-TCGCTCGCA--CT------------CTC-TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CAC-ACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAAACAACGCA------------CC--------AGCAA-CAA---T---AAAAACC------ACAACAAA-------------AA------------TTACAGSizeHit CountTotal NormTotal
No Reads
droFic1
TA-----------------T---------TCTTTGGTTCTATGCTCGCATT-TCTCCTC-TCG----CA--CT------------T---CTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTACAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGAAA-CAA-------AACAG----------------------CCACAATA-----------------AASizeHit CountTotal NormTotal
No Reads
droEle1
T-------------------------------------------------T-TTTCCTC-TCG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGCAA-CAA---A---AAAA-----------------------AAACAAAA--------------AACAASizeHit CountTotal NormTotal
No Reads
droRho1
TA-----------------TTCT--CTTTTTTTCGGTTTAATGCTCACATT-TCTCCTC-TCG----CA--CT------------T---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGCAA-CAA---A---AACAG-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T-------------------------------------------------T-TCTCCTC-TTG----CA--CT------------A---CTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CACGACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AGCTACCAA---C---CTCAG------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
T-------------------------------------------------T-TCTCCTC-CTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CA--------AGCAA-AAA---C-CAAACAG----------------------CCAC---------------------AASizeHit CountTotal NormTotal
No Reads
droEug1
T-------------------------------------------------T-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATAGCTTAAGCAACGCA------------CC--------AGAAA-CAA---C---AACAG----------------------CCAC-----------------------SizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CA-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2213805244.00380524400302454771296025391564010510160400014202521494667122221954119762674102560245784823711135244222177812667184955646157189777248935415702153212124896113605522420973690000000000000000083208438664567562518333821183120919131384185815135967378227103413021435551714112311623693379318002103230646350850297061785292884421311417206414110215819173179128160134144164420612806279930812402140127211373815501974799462713019609221091807726161381817754254461107588442078347920873326061837386065443764966490455251128649290295106401898776040362768213912191116891325719589333927176125815903154743901375734561788471229804222167422341360427791461313032601825183208816022970247298666518083652613428281566773242401435270556280033402194983932359139652886270431247531162817464395988127852923643270627016662909185577591152261807011672575487451614615064981127181517569941809425952219431954646242174601472462124050592281072600101971339146789111181427328156801496843721609185018813161205124335168821202185524663334208881381514793713313056740187875735915490639614247358581772313313471173382131732581909700124159167031127715827476148642124897856937
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2112962311.0029623110000672415572017114581442553000806182737013213251146311653452545857112814812248131636761833197976634042760311992141421580417146404564356543391088588401030285000000000000000002196217517661794724732283574425622241149461632391721174537648826569625830190171129315360110726137017922123860105520133908676107571215833225345392525915613424347652738693510241731056190821633772915143745173026159623519716181644365723641313570911707717115021685698904842821011182509312961504821173538654651077161514222992297633742040109152427151116176668733180910726473354340125198195026225990561193964266202236532795205138555909239050943940925022280002617650667433443382653198313073662133594100203519013411315126657723514267194175563538619863427784942278623231357246373919516098323786038638885233854637969287729666140983771027203102873212673346489226056844277163609270860714893214913733574394424364516622383418436053266118917606252824912840975791456605134951118811175292721252885485475103637711561483654684119537156178113924317847957355463373826427330519790691807118135142021315335458116913796736037
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................241112058.0011205800000386100000000000391122800340000000572414552811612835196432276250883522561043718155000000000000000000000001816141201485526551500201030675140010601052827111122136401000020401032026612912835552534881727173417291064414324576152254194382592511723100070000076020037120105000000512793379551671136769427511543131056409644175003613183971890839713708381423138637645062600262200784217103104341058871477131429112540135743395517121243061317531471007732371437810083807719812628425836121644119483706180934661851111851764432304762142225711278713051133916115251398426963171914936395
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................23184249.00842490000323642353900110039781052500300027900208418212249844536851791381861771943053486242036900010450000000000000000067263549454811062396547973851223759629133291187631841302833631802934274326436631630101000513101218215976751201142232242371291402687515535915077520433958826829910518734610045441392333127043009112802312332823543601954334421795135202031361832615345671001310017110644114994210075294615871434199723552136164960046610632641180080602246534951411441696244628138235316439592381772783133465631451827927320281867262790327041037426610003841124133253202261161315141333791213328154628741120200030958204443437219818372061549262463266331198624132330375401346195826913410533466453113159193
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................22172194.007219400006320281034125110002002150000900062000077117109141475184121230222090001100000000000000000016038159991254711373228001111632914321895904017111472618257159543620052124811768504130332534264654013622612138546010000000010242000032029032172174213921332810146130000030929040131060400420070601000303100801510000012800000113300000010004716611231185284238354227410400000740208222201321020012211322115117151133341497372510276010327012080003111312401001318394122210102112000100024173317
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................23129933.0029933000001820510210000000718420160000000552429583634611073221649184766807841120000000000000000000000019720516716911644781491355202482413465602810121915183123713163353600600101000604404781218871120156396452465148161147278173154130176010014558623013600345162001700017050605002410212442342613551821132206594171005100863261142221312796861260137016131217572412810166201790035151130618311421318171763125327945820577112653840451917725876120169518482020475313252938216712517145372547512855307544981513112156816752211248125412791481210613312156021687945423192455884
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................20123576.00235760000400110100100000016287160971283119342214781714181815138614013112324336310314329154500300000000000000000003347333511842226548421332128211500151821471320526110224326281505017140108491516447459812181617381879884826838280827227556913146546131750133721731963022161473932198177190125598427213810541602401190246202001268518011100375427222112575542450720125939136325682610915600002024811148775131254172272131532481233471138514440971557316510122137082638372268282057372080352316664884355851421201445122844026146948189901238710262635655378702495673127397824633522388796781981021101522765635648
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................24122521.00225210000000000000000000000000000000000000001020000001010000000000000000000000000100000000010000000000000000000000000000000000000000000020000010000010000000002000000000000000000000000000000000100000000000000010000003005100333643270000156476758000000000000000000000000201100021000143639250000200000000005102010000202000100000000000010003010
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22117508.001750800000000001000000000450111040000000331791571028335698164394202182411420000000000000000000000001312580100103220111141500000100270100010021218902000008020140061378101038163430616121496119482684814811691511002133483070000000010014300311419000012400010729000000304155310238971611111100001020055196498114843642930361115726661669264950410747937251203171167711210477719911051445719358423604696493762275359179943733275211452391196775112389131241353047121281911436370970
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................22110466.0010466000000000000020000003500022600000001912164551538150168111815511980900000000000000000000069460001202002010102200000001521100100000000000200020000000104051326664476232421724423651211235131070800010400050101000010802211415000113390002213700400021141014270101714974582492751371073512700300000332701725122201821201153273181534918129057213958133913533828546654455105793993646134961687401236774120308154356477105321721652441931971313011216056209154107185201110617385326142132275661370
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2219739.00973900000000000011100000020522400000000271826341431411263036662581316281473100000000000000000000000242911301152129981150072415500679431211143502000606200000315014500311311322017101844837335383489287634867171301107021017180160035130501501143192324328500103930000023720001004101119716485322535691311354001010018902844553461921810135151138567661626952999788178611261634810813685610441985116264716103721417111210233410149161054260452603124222785106175691634171997013631117142910301625523797280
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................2519593.00959300000013000000000000926200000000000182546013114251123754032276293000000000000000000000002223045984320001000007000002000031500030021010000000000000001103110054242266127679628119194551112181700000000000200200010100000000000191148790006104290000016759801000010021271543055205912313370000000009415000000003100200000201114244111392114622680732312354717651030000028500051108244117206020111372564440120001103012036861461000110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2418669.0086690000001000010000000013700000000000213152191652514103322271717111580000000000000000000000023370141412413010100000600000000123502030040020002010000010431014119110267568984829553825301192421191210000004022020003000000000000022012400103124813226132941000100100146425188629237030111995524181280100239200011081215100040110121003172060104331612473411861258331591103001101100001831664373020001114727791025061330000934312436234410
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................2118302.0083020000000000000110000042813003002270920072734352446143553241939133734664951150000000000000000000000029530325020103061385510112141000147015262849693231360300000000111770021001013276454691136785050462912111718000002815543721272409103098277213040208136062421120003133300000851000000114410116141424205786783081154628000174000012161513611213601465561060131725121413210529803720171260383391384531138155116111478141619320309368362211100174781323512251543071002302661310715200
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2017755.00775500000000000000000000614201090100000626215210161021242211503034252325651200000000000000000000000161610140000414300000000000000001220000000000000000000001000012971208506758511297309939928828129142283911417096101301000648100000013041153192101121000201338000000212432133963671155106524614972080000167152219189213819361266161064715323804417414213105228139171324473255344116291192037752310212544517539138227161759151381169265913025376666278012244540211549218919311
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................2117334.007334000011000100010000003485601084000000001726124610191234191534342811192824510000000000000000000000065412031112055104002422001000003710100001040000100013128160040011210761531442736106121103106101511616163512442151430511221022062026050123022610307215181881800307200000055228003011311236314136171311717221301001950451874612845202712716107274226228431945311403592713573321485851002026717766203591931401712813537921538992476633710872192735241411153142614365117325798161019811130301350
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2115332.005332000066151000010010000271100000000003419834157121217761260000000000000000000000000621212262900001802131100051101353234002042000111010020010012433623334026151028572101520600100400200419070022020305014020810251814400911280000092900110061136133448119205410139139000101005506302233204611271302638722713167361015755913845114054465228115562316261521751364195992761181302318161649211442011214213432284189291413522116142671260
..................................................................................................................................TTGTTT-CA---CGCACATTGTATATCATC...........................................................................................................................................2615260.005260000000000000000000000010000010000001302003172202224121600000000000000000000000815680200112001000102000220040500001300200000010000100419300112023022024122732789000000000000010000000011008020000010200400000000113100000000011400864643201336520290405143113616314000000020152201306004514002122020450010000010000021000064000072005050030031901000001200001000413100
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2415077.00507700000100000100000000322000300023000242315712708511661413100031200000000000000000151771700000214010002117000000165102020004000000101102101154014100214328111741213020512133712132604200854250100140203075000120467195411000152781321002232500000017307141651138943811148051194400611800122207111274316632321703781315353192517131310521576921256267582171925191424535590201438315551100147511285118128651048025452937178012264631029129282215471311327360
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................2215064.0050640000011001001000100031000010000000169342120932733422864191388000000000000000000000003424040416420310030630059001558043510100100000000001100664665190216162082120672106181412000011104306010210011200120053262550040030000019530001000313921311613281085613223000098020081522149305105299176547131323369172337136411635911126791517100407610143182230353221286727152218815686261115914570247016121740191448522682413142211551530
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2114924.00492400000001000000000000082000410000000317242121483813620162476000020000000000000000001025814010505251040111410081003427031100180010001010100002027101813101425222012135233383453116381842100304004211000116110205000430315111000122100000015220000009183117321366239191207287242010000003100033220102663630643131191811561011212112525482638238059340524271222177111115819433117117005231816315040125613101435161744154111211815241317412
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2013672.003672000000000002000000000502001200000016431033210521576320000000000000000000000044330402312302012112300134040010000100001000000000000000305305031381511106751154324101115002110815046401335031000401106179520030215000001600100076355166748177847446790000000010110140120211112303105257218371041110544274315654263822232301159543992114415582280291762317113131491047851731175782498826211214447406
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................1913578.003578000000000000000001008134000421891010014313561251443048533150000000000000000000000005262010020010000001100020100010020110000000000000000001200000411420435316328101983132211510240110115301100540141114130100509144951450080224000000100030003826641291242483724183050060000540030241123573344574113891314061718193170488412681822528182619412899101324864184951164081357318655796618611463051219567518918252014297921150
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................1913471.00347100000000000000000000440111040323700710421156250442653000020000000000000000000172519130005001410120015200401203462000101004401012105124151416622200003212570215697973464502017182310512320420272336212302010115328119500707220002117002100911418111531255731351722197210278000083343421617206383532144591260144168215318619421712363145314480319831172611281251076122131820152453253523137374533587161327331931125259221519327252652
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................2113018.0030180000000000000200000000000000000000010041120010323221110100000000000000000000000100100000000010000100002000100000000101000000001000001000301031489678175642794180000060100001305000201001000500031296000201500000270000004000013272422224219264410000000100001061002201063021033583191358009550810729151275398341583296331135211343013527160561627101112421813887144751197303214796931721140
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................2312687.00268700000000000000000000240000000000001576211655517011124960000000000000000000000009105901402100001000010001100103002000001000000000000000010322220014191032178722138181130000200132100100010000010010301015270002110111039121000000002921135944303556873310131111836700200120340000230013050085591189147830341954218536208341570831410107301105581344926121483846408156131724170013594652228100
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2112384.0023840000000000000000000002210060000000131104118200573474300000000000000000000000887300000003000001021000020001002000000010000001000010000012140133694195108358632888131004000100002102000200202041411000001100000660000001511480445233094814531122800222004311014320030201411431615502671813454231552913919135352039582151231156221922039226921141420305132179431111827181133211133431621359130
............................................................................................................TCTTTGGTATTCTAGCTGTAGATATC.....................................................................................................................................................................2612159.00215900000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532626000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................1912091.00209100000000000000000000116000010000000011032122102225513100000000000000000000000895800000012000000000000000001300100000000000000010100013302271011616661317141105161214500000000110200000510000000100320010002012401000120000001311317610461350140010000001000000000011001112003207014264930794793317525205262221483030001410140178110321511316442465391116311600010631417620
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................2511524.0015240000001210000000000025000000000000112451000141005110230000000000000000000000000010410748000000000400000000110000010020000000000000001000501202323061293130300300000000000000000000000000000100115013000110200000254300000000012124121105254229920000100020000001000000000001002010010010004316526714321014580011000101810004163318410000005235541200200111001074412000010
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2611192.001192000000010000000000000340000000000002272001121205200000000000000000000000000000000530040000000001000007000001000100900000000000000000020000041420254531012013200000000000000000000000000000000001201300003060001017420000000005010265114316117570000000000000000000000000000010001000000004110817653816942100010000030000492716360000104522601000001000000031428000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................2311136.001136000000000000000000002010000000000003124612012644422330000000000000000000000036220300100000000100000000000000010000401000000100001208732244046921626415091350010000010010000000000104000010016490000004100208160020000001612111631912243174600000000100110210000001100010130352441331016501129136312640411400001111112946172807122265047734320942241060314854115640
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................241950.00950000000000000000000001110000000000000031011200204120010000000000000000000000000000023000000000000000000000000000000000000000000000000000021001284312020111120000000000000000000000000000000001030000000000001900000000001103292110403924560000000001011100000000000000001000100211002115511691714143800000000014000052715371701000021514101100210100003632000200
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTT.....................................................................................................................221900.0090000000020010100000000000000000000000010000000000000000000000000000000000000002372311921650200012320020000000000162590102000100000000000000000000000011000000000000000000000100010000030000020000000000000000000000000000000000100100530001100000000000010000000000000000000000000001010202000001000000000100000000000100000000000000000000000000
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................181839.008390000000000000000000033000001000000001001010000100100000000000000000000000000222000000000000000000000000002000000000000000000000000212000000213401606111120200000000000001010344000000063001111300000030000001000000010329502000033000000001000001200000000001001001108300510222061588879969212001100050014121711402243822134427321612702101321207010
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................181634.0063400000000000000000000411000000000000000000011000100004000000000000000000000000537100000000000000000000000000000000000000000000000000010000020041543725402470121000000001000000100000000001003801000000000040240000000012523011000100001000010000000000000011001000001053202003121935024026101000010022002152421020026154202100000300000000003200
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................241597.005970000000000000000000002000000000000000200111320112176020000000000000000000000000010010000000000000000000000000000000000010000000000000100000002710390301001310000000000000000000000000000000010500010000000000020000000003000018735420000043100000010001000020000001010100010000101788124111436170000101004100015410383110000166700010000100001102003020
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................201521.0052100000000010000000000010000000000002300211000103000014000000000000000000000000687080390006210100000011000010011513140010000000000000001000330000005210012102002200000000200000000014050002000000110000000000100000000000000010100191900020111010000000000001000001000300000001041111101121326050000500001000200100011110001200100000000010000105030
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................181491.004910000000000000000000034000000101010011400000010100000100000000000000000000000713390000010000000102000000001020000000001000000000200045766011024102002120111101101000030000402000001103020208302210100001000000230000000031032122365211222221000100200000000011021001161630106324711236231404209231235001364311120040313100011000000000202618002
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................221375.003750000000000000000000000100010000000000101120011100021300000000000000000000000121515600000000001000000000000111000020000000000000000000010000000001002311101001001000120000000000000000000000000000120100000000044000000000321010691610842800000000000001000010000000000000000011000041861122211300001000000000039080301122189113100200100000100104018
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAT......................................................................................................................................................................251351.0035100000000000000000000000000000000000000000100000000001000000000000000000000000001010000000000000000000000000000010000000000000000000000001002400000000000200000000000000010000000000000000100100000100000000000000000001003463438413728360000285001000000000000000000000000002010011162115180010000100000002100000000000200000010000100020000300
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................221324.0032400000000000000000000010100200000000121142111020105201000000000000000000000005135000001010000000000000000010020000000000000000000000000000000110013120030000000000000001010000000002100000500010000000000000000000000022002048540103460080000100101130000000010000010210041111320301260110011500000000103200030003211100350101200000000003000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCA....................................................................................................................231319.003190000000100000100000000000000000000000111000001000000000000000000000000000000493632270224140543000001010000180114272811021001100000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000230106100000000000000000000000000000000000000000010003000000000001000000000000000000000000000000000000000000
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................192312.00624000000000000000000000100000000000001000012100002010000000000000000000000000001010000000000000100000000000000000001000000000001000000000000004361063623020000010010002500101020243102000303005167120002006000007270000006142403123166143411000000000200001000000000000001000002002000072113020842861375113101400120200010202510211471017943322726106129134620
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................241300.003000000000000000000000002000000000000001000010000012001000000000000000000000000021000000100000000001000000000000000000000000000000000000300100123000102202000000000000000000000000000100000001000000001200000391000000003100613595102340000000001000000000012000000000000010011001125162261811110000000021000261211000000037101010000300001001101010
............................................................................................................TCTTTGGTATTCTAGCTGTAGTAA.......................................................................................................................................................................241298.00298000000000000000000000000000000000001011000010401310010000000000000000000000000000000010000000000000000000000000000100000000000000000100001001312571150402000000000000000100000000000100000001200000001000000150000000000000000011030000000000010000000000100001000000000110006693194641130001000011000001734100000113000000000000011200001000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................221296.00296000000000000000000001000000000000002020100011403000100000000000000000000000000000000000000000000000000000000000000000000000000000000003000059715311110000000000000000000000000000000000000001010000000000000120000000000100202010020000000000000000000000000000000001010000001013738412030000000001100002715000000332000000010000001501000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................241290.002900000000000000000000000100000000000000030000200002000000000000000000000000000000002000200000000020000000000000010000000000000000000024000110011100010002020000000000000000000000000000000001301000000000000316000000000310035025035000000000000000000000000000000101100000000831918939314000001000600003573600100001312001000110210102214100000
............................................................................................................TCTTTGGTATTCTAGCTGTAGCAA.......................................................................................................................................................................242288.505770000000000000000000000000000000000001100000002015100100000000000000000000000000000000000000000000000000000000000000000000000000000011000200375931010001001000000000000000000000000000000000011000000000000160000000000000100000070000000010000000000000100000000001010010112012775381312180000000014000045844215000000024000000000000000301002000
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................222288.005760000000000000000000010010000000000000001010100021001010000000000000000000000011300100000100000001000000000000000000001000020000001000100001017701365540100000000000000120100000000000000100001310000100000018000000110010000000000000000004104113410002010450200953901188852093252033517500100312321261013518624121111010161921522052019006001101012000
..............................................................................................................TTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................221282.002820000000000000000000010000000000000000000000000011000000000000000000000000000413100050000000000000000000000000000000000000000000000000000000000000010011010000000000000000000000000000000001100000000000000311000000000021000000000000013462000000000000000000000000000000000000325647290010000000000100101000001000010000010000000000010000
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................231277.00277000000000000000000000000002000000000331202200202110000000000000000000000000000320000000000000100000000000000000000000000000000000000000000000300120020010100000000020000000000000020000002010000000020000040000000000010032343520037400000001011000120000100200000010000071100019575192102010100010000000310000019011100000000000000000100000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTA.....................................................................................................................221275.00275000000410001000000000000000000000000000001100001000010000000000000000000000043453542080239020010000210001105514153111200700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000100000140204000000000000000000000000000100000000000000000000000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTG......................................................................................................................................................................251270.00270000000000000000000000210000000000001000400011002310100007540000000000000000000000000020000000000000000000000000000000000000000000020000300209381121300440200000000000000000000001201000000021206000101000004000120000121003033422000000000005000000000000000000000000000000000111200000101000300100223401200008510200000000000002204000010
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................191251.00251000000000000000000000000000000000010120000000000010100000000000000000000000015115120206420600000011000242085101432020011000000000000200020000010201601100000070000001060000000000101000100402001100000001000000000000000005000011301021101000000000001000110220112000000102000011041304030000401001000100300000022000000000000000100000049000
droSim2
T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACCC---A---A-------------------------------------------------------AASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2211354901.001354901162797162102358228440038133229384834374315324626288408924591205131322
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................211781402.007814023128592387171480100020877118052115718596408949171565171100123
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................241175737.001757378396794326570026579205827848336034262644917034001
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................23145225.0045225100371789131400847570131638393853706919098011
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................20137788.003778816057167960096897753951658324451181130215
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................25123262.002326224460496002169169611182679243514111000
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................22120268.0020268188898117137140040386518711600000
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18114763.00147633136105792891003782842111112480079527
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................23110627.00106272101111120347001845165029101983371293318000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2418570.0085700417045002286173429521332321320000
............................................................................................................TCTTTGGTATTCTAG................................................................................................................................................................................1515120.00512000000012047417954051972011001
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2012386.0023861024610200889896234127501884000
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2112342.0023421646034002552531033620422221000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................2512295.0022950027600201151109080312500000
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................1912169.0021691343912713004503683802144161417213
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2112121.00212191271805006140905923410100
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2211939.0019394710161400708581229147322000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2611660.001660001320001381278634935100000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................2311509.0015091811251160037026835718328601000
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2211218.00121828217618638009370148134542719000
............................................................................................................TCTTTGGTATTCTAGCT..............................................................................................................................................................................1711048.00104800000012495113644530043128136
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................1911033.001033001480092754254743320000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2411027.00102733278313002732282501018308000
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................201839.008399113607006049523310500000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................231735.007351035290014712323513425411000
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................211698.006981954232760044511499100000
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................211681.0068160212002222281186715101000
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................191672.00672100623002412456437281413000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................241619.00619302513007079132675324000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................241607.00607102084003845210980300000
.................................................................................................................GGTATTCTAGCTGTAGA.........................................................................................................................................................................171598.00598000000652230535000000
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................181579.0057900010022103131484000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................221558.005583413431007869178107211301000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................241536.005360199110085891686710600000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................221446.004461001700136530846734000
..................................................................................................................GTATTCTAGCTGTAGA.........................................................................................................................................................................161393.003930000001273527312000000
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211359.003598424800062662114522701000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................231288.00288000238005623133000000
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................181282.0028220850036271917165300000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................221236.002360041200583978367200000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................211227.002271133800321613141900000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................251217.002170039200332569432220000
...................................................................................................................TATTCTAGCTGTAGA.........................................................................................................................................................................152214.5042900000079621882575000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................211183.00183001600695824231010000
.................................................................................................................GGTATTCTAGCTGTAG..........................................................................................................................................................................161176.001760000002334164000000
................................................................................................................TGGTATTCTAGCTGTAG..........................................................................................................................................................................171157.0015700000054158125000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................221157.0015700312900331090000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................221152.001520019000523624173100000
............................................................................................................TCTTTGGTATTCTAGC...............................................................................................................................................................................161150.0015000000034351090014318
..................................................................................................................GTATTCTAGCTGTAG..........................................................................................................................................................................151119.001190000004167101000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................241114.001142015100242131137000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................221102.00102315000012090000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAT......................................................................................................................................................................25180.00800050005826323001000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACAA......................................................................................................................................................................25175.00750010007634234000000
....................................................................................................................................................................GCTTTTATACCAAAGCTC.....................................................................................................................18173.0073000000000073000000
............................................................................................................TCTTTGGTATTCTAGCTGG............................................................................................................................................................................19172.00722174200000002000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATTA......................................................................................................................................................................23164.0064001000251810100000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATG.......................................................................................................................................................................24161.006100100025121193000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................23161.006100020012102692000000
..............................................................................................................TTTGGTATTCTAGCTGTA...........................................................................................................................................................................18161.006100000022206211000000
.....................................................................................................................................................................CTTTTATACCAAAGCTC.....................................................................................................................17161.0061000000000061000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAT......................................................................................................................................................................25159.00590000001992190010000
............................................................................................................TCTTTGGTATTCTAGCTGTAGTAA.......................................................................................................................................................................24158.00580002005425162400000
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................22257.501151021001000109100000
............................................................................................................TCTTTGGTATTCTAGCTGTGA..........................................................................................................................................................................21156.0056112000633832000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22155.0055003220089625000000
...............................................................................................................TTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................21251.5010300310069111657000000
...............................................................................................................TTGGTATTCTAGCTGTA...........................................................................................................................................................................17150.0050000000540140000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAACA......................................................................................................................................................................25145.00450011000451960000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................24142.00420070009111122000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................24140.0040000320020230100000
............................................................................................................TCTTTGGTATTCTAGCTGTG...........................................................................................................................................................................20138.0038128000304317000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTA......................................................................................................................................................................25138.0038000000129980000000
......................................................................................................................................................................TTTTATACCAAAGCTC.....................................................................................................................16135.0035000000000035000000
....................................................................................................................................................................GCTTTTATACCAAAGCT......................................................................................................................17135.0035000000000035000000
...............................................................................................................TTGGTATTCTAGCTGTAGAT........................................................................................................................................................................20131.003100000056857000000
............................................................................................................TCTTTGGTATTCTAGCTGC............................................................................................................................................................................19230.50613032700000000010000
............................................................................................................TCTTTGGTATTCTAGCTGTAGGAA.......................................................................................................................................................................24130.0030001100121182400000
...............................................................................................................TTGGTATTCTAGCTGTAGAA........................................................................................................................................................................20130.003000100063866000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................23127.0027000000371160000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATTAAA....................................................................................................................................................................25127.0027000000471240000000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................22126.0026000110043611000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................23125.002521400014741100000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAC......................................................................................................................................................................25124.002400400096320000000
.....................................................................................................................................................................CTTTTATACCAAAGCT......................................................................................................................16124.0024000000000024000000
droSec2
T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACCC---A---A---AACAG----------------------CCACA---A------------ATACAGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22141461.0041461256263162103502323
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21128410.00284109292621667976105
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2112150.00215021311171
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2411311.00131134547808111
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................231828.00828634917411
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................201760.00760754042
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................231612.006124492811223
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201364.00364187753567
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................201178.00178118153411
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251117.00117522594
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211117.00117106524
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221106.001065025922
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................21197.0097730177
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................19186.00862743025
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................21173.007354487
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................24168.0068343247
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................19166.00663411021
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................22162.006254251
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................24158.005819161211
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................22158.005859377
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22146.004646000
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................22143.0043154204
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22134.003433010
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................23133.003324063
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19129.002927110
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23123.002315080
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................23120.002019010
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................23118.001818000
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................21115.00156513
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25115.00156072
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18115.00158034
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................19214.502986114
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21114.001410202
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22112.00122613
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................18111.001111000
.............................................................................................................CTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................21111.001111000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24111.001110100
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2219.0099000
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................1919.0099000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2218.0082051
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................1818.0085030
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2617.0071060
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................2417.0071150
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................2226.001210110
..................................................................................................................................TTGTTT-CA---CGCACATTGTATATCATC...........................................................................................................................................2616.0061041
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................2016.0062301
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................2416.0063030
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................2416.0063030
............................................................................................................TCTTTGGTATTCTAGCTGTATT.........................................................................................................................................................................2216.0065100
.............................................................................................................CTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2015.0055000
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2214.0042020
............................................................................................................TCTTTGGTATTCTAGCTTAG...........................................................................................................................................................................2093.563226411
............................................................................................................TCTTTGGTATTCTAGCTGTGA..........................................................................................................................................................................2113.0032100
................................................................................................................................................................TAAAGCTTTTATACCAAAGCG......................................................................................................................2113.0033000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................2013.0033000
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2113.0033000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................2113.0033000
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................2313.0031101
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAT......................................................................................................................................................................2513.0031020
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................2013.0032010
............................................................................................................TCTTTGGTATTCTAGCTGTAGACAA......................................................................................................................................................................2513.0032010
.............................................................................................................CTTTGGTATTCTAGCTGTT...........................................................................................................................................................................1912.0022000
..................................................................................................................................TTGTTT-CA---CGCACATTGTAT.................................................................................................................................................2012.0020002
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................2512.0021010
.............................................................................................................CTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................2012.0022000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2312.0022000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2412.0020110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATG.......................................................................................................................................................................2412.0021010
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................1912.0020020
............................................................................................................TCTTTGGTATTCTAGCTGA............................................................................................................................................................................1912.0020011
droYak3
T----------------------------TCTT--------TGCTCACATT-TCTCCTC-TTG----CA--CT------------A---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAGCGCA------------CC--------AACCA---A---A---AACAG----------------------CCAC----------------------ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22148038.00480384624209311616833714637881203316480
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21136330.0036330132931123627743222961165331830008
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2312096.0020962660113975021270100
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2111902.001902218583820110000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2311309.001309100674459331215150010
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................1811131.0011311051345002061230
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2411010.0010101153626916641090005
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................201980.009803968420030000
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................221791.007916876816136100000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................211659.00659019045652330000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................221409.00409020719730000110
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201370.003704814211515712231007
............................................................................................................TCTTTGGTATTCTAGCT..............................................................................................................................................................................171235.0023500000002422090
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221197.001978059218217100000
..................................................................................................................................TTGTTT-CG---CGCACATTGTATATCATC...........................................................................................................................................261190.0019058155100000021
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................241158.0015807662161120000
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................201149.00149210023122280000
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................211134.001349303421310000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCC......................................................................................................................211132.001320013200000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................231125.001255910640100000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251110.001101781870110004
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211108.001081292355540000
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................191102.0010236251714762130
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................221102.00102411501232020000
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................19188.00880614102560000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................24172.007220182431330000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22165.0065062300000000
............................................................................................................TCTTTGGTATTCTAGC...............................................................................................................................................................................16162.0062000000060560
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................21157.00572221583160000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22154.0054051300000000
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19142.0042032720100000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................23140.0040036220000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................22137.0037942011020000
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................20135.0035072800000000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................23126.0026026000000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23123.0023110611130000
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................18122.0022119200000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21120.002028810100000
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................23118.0018011600100000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................21118.0018016200000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24117.0017201410000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25117.0017010430000000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................20115.0015013200000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................24115.001513470000000
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................19115.0015014100000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTG......................................................................................................................................................................25114.0014020001000011
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................22113.0013001300000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................26111.0011010100000000
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................18111.0011010100000000
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGC.......................................................................................................................22110.0010001000000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................2419.00904410000000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2219.00909000000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGCA........................................................................................................................................................................2317.00700700000000
..................................................................................................................................TTGTTT-CG---CGCACATTGTATATC..............................................................................................................................................2317.00740300000000
............................................................................................................TCTTTGGTATTCTAGCTGC............................................................................................................................................................................1926.501350800000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGGA........................................................................................................................................................................2316.00603200010000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................2516.00600510000000
............................................................................................................TCTTTGGTATTCTAGCTGTTT..........................................................................................................................................................................2116.00600010410000
............................................................................................................TCTTTGGTATTCTAGCTGTAGGAA.......................................................................................................................................................................2415.00501040000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2315.00505000000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2315.00505000000000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCT....................................................................................................................2315.00502300000000
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................1915.00502000000030
............................................................................................................TCTTTGGTATTCTAGCTGG............................................................................................................................................................................1914.00440000000000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTA.....................................................................................................................2214.00401300000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2114.00403000100000
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2114.00403100000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................2414.00401300000000
..................................................................................................................................TTGTTT-CG---CGCACATTGTAT.................................................................................................................................................2014.00411101000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2414.00400400000000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCC....................................................................................................................2314.00400400000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2214.00400130000000
...............................................................................................................TTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2113.00302100000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2213.00303000000000
............................................................................................................TCTTTGGTATTCTAGCTGTATT.........................................................................................................................................................................2213.00301010100000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCC......................................................................................................................2213.00300300000000
droEre2
T----------------------------TCTT--------TGCTCACATT-TCTCCTA-TTG----CA--CC------------T---TTTATCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACCA-AAA-----------------------------------------------------------AASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21156043.00560432603821117131167124831441912
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22148074.0048074360781030737103557313333130
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2112997.0029972981113470
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2312659.002659116328161289471304
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2012103.002103206104220160
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2411207.00120710745338174921
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2311016.00101685651526241341
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201675.006753988123157970
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211459.004592641525817670
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................211288.0028820553146190
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251246.00246238001016
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................201191.0019116132212110
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................191174.001748909439330
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................241141.0014144561273127
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221139.0013969210432220
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................211130.001309411715120
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................221126.001261050000021
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................191124.001245724338200
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................221117.00117813211110
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................23198.009898000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................24193.009378208230
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22184.008481000012
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTG......................................................................................................................................................................25145.0045903031812
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................23135.0035134001116
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................22134.0034902012110
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19132.003225101230
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................22132.003222105130
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................21130.003015300390
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23129.002925001030
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22125.002581210130
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................23125.002525000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTGT.....................................................................................................................................................................26123.002350001017
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................18122.002213011430
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................24122.002222000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25121.002121000000
..................................................................................................................................TTGTTT-CG---CGCACATTGTATATCATC...........................................................................................................................................26121.00215902122
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................26121.002120100000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................22121.002121000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21120.002012300410
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18117.001742001100
.............................................................................................................CTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................21115.001515000000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCC......................................................................................................................21115.001501500000
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................20115.00157400040
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................19114.001414000000
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................19311.6735150009110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTGTT....................................................................................................................................................................27111.00115000105
.............................................................................................................CTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2019.0099000000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................2019.0099000000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................2118.0088000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2318.0088000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTT......................................................................................................................................................................2517.0072010103
............................................................................................................TCTTTGGTATTCTAGCTTAG...........................................................................................................................................................................2096.7861420001180
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................2416.0065000010
............................................................................................................TCTTTGGTATTCTAGCTGTATT.........................................................................................................................................................................2216.0064010100
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................1816.0065000100
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................1915.0055000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2215.0054001000
.............................................................................................................CTTTGGTATTCTAGCTGT............................................................................................................................................................................1815.0055000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................2415.0054000001
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................2015.0053000110
..................................................................................................................................TTGTTT-CG---CGCACATTGTATATC..............................................................................................................................................2315.0050011120
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................2315.0052300000
.............................................................................................................CTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................2014.0044000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................2414.0042001100
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2213.0032100000
..............................................................................................................TTTGGTATTCTAGCTGTA...........................................................................................................................................................................1813.0032001000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2313.0032000100
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................2223.0060003030
...................................................................................................................................TGTTT-CG---CGCACATTGTATATCATC...........................................................................................................................................2513.0032100000
dp5
T----------------------------------------------------CTCCT----------------------------------TTAAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACAA-CAA---C---AACAA---CAG----------------T------AACTACAG----TAATCAGASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................211233608.00233608638141937177018067099696993440501223018132
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................221163371.001633714215932121641252969355117828582567462582
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................20112259.001225911210120617732840
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2115487.00548715264306015915138
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2314219.004219714789046381511172981139
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................2013457.0034571320628714472996574378157
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2412880.00288012177581102284513644
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2312540.002540214291103587371471143
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2011876.0018760413701209346751014
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2111252.001252198921129217119712
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................2111012.00101206352904311502620
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................191899.008991707209126882342
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221682.006824424171138922112369
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251593.00593047390120386100
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................221514.005140234166940083135
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................191451.0045143111578182421430
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................191429.00429087003008320236
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................241386.0038601071105271137764
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................221353.0035302665040163131
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................241253.002530102130210097812
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................221246.00246228606231003366
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................181216.0021601571020040511
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................231196.00196019410000100
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................211183.0018304420401551364
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................191182.00182018200000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................221153.00153015300000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................221130.001301280102211508
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................221118.00118011110000321
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18197.00976212110110325
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................21195.00950265032619151
................................................................................................................................................................TAAAGCTTTTATACCAAAGCC......................................................................................................................21191.009101819000000
.............................................................................................................CTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................20180.008008000000000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................22177.0077037301200700
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................26174.0074058100001500
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25162.0062040304011400
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................18162.0062028000008521
..................................................................................................................................TTGTTT-TT---TGCACATTGTATATCATC...........................................................................................................................................26159.005902510501000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................23153.0053020201010911
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................21153.005318320803100
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22152.0052019112523217
.............................................................................................................CTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................21145.004504100000310
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................24144.004404400000000
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................20143.004303301104220
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................20143.0043015243000010
............................................................................................................TCTTTGGTATTCTAGCTGTAGGAG.......................................................................................................................................................................24242.008400000008400
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................20142.004204020000000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................23141.004103500000105
.............................................................................................................CTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................23132.003202400200600
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................23129.0029016120100000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................25128.002802210000500
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23127.002701300301901
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................24126.002602200000220
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................24124.002401500200502
...............................................................................................................TTGGTATTCTAGCTGTAGAT........................................................................................................................................................................20123.002309100001111
............................................................................................................TCTTTGGTATTCTAGCTGTAGTAA.......................................................................................................................................................................24123.002307101001400
.............................................................................................................CTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................24121.002102000100000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATG.......................................................................................................................................................................24120.002001000001630
.............................................................................................................CTTTGGTATTCTAGCTGT............................................................................................................................................................................18119.001901900000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................22119.001901500000301
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................21118.001801800000000
..............................................................................................................TTTGGTATTCTAGCTGTA...........................................................................................................................................................................18118.001801600001010
............................................................................................................TCTTTGGTATTCTAGCTGTAGATCTG.....................................................................................................................................................................26115.001500000001500
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................22115.00150720100410
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................23114.00140400100810
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTG......................................................................................................................................................................25114.00140800000420
............................................................................................................TCTTTGGTATTCTAGCT..............................................................................................................................................................................17114.00140000000716
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................21113.00130600000511
...............................................................................................................TTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................21111.00110700000400
............................................................................................................TCTTTGGTATTCTAGCTGTAGATCC......................................................................................................................................................................25110.001000000000100
............................................................................................................TCTTTGGTATTCTAGCTGTAGATCT......................................................................................................................................................................25110.00100100000540
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................19110.00100200100322
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCC....................................................................................................................23110.00100341000020
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24110.00100420100300
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................23110.00100800001100
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCA....................................................................................................................2319.0090400000500
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTA.....................................................................................................................2219.0090810000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGTG........................................................................................................................................................................2319.0090000000810
............................................................................................................TCTTTGGTATTCTAGCTGC............................................................................................................................................................................1918.0080062000000
...............................................................................................................TTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2118.0080500000003
.............................................................................................................CTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................2118.0080800000000
...................................................................................................................TATTCTAGCTGTAGA.........................................................................................................................................................................1518.0080000000215
................................................................................................................TGGTATTCTAGCTGTAGAT........................................................................................................................................................................1918.0080300000302
............................................................................................................TCTTTGGTATTCTAGCTGTAGATACC.....................................................................................................................................................................2618.0080000000350
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................1928.00160800003311
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................2418.0080600100100
................................................................................................................TGGTATTCTAGCTGTAG..........................................................................................................................................................................1717.0070000000601
............................................................................................................TCTTTGGTATTCTAGC...............................................................................................................................................................................1617.0070000000502
...........................................................................................................TTCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................2117.0070300000400
............................................................................................................TCTTTGGTATTCTAGCTGTAGATCCC.....................................................................................................................................................................2617.0070000000070
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTT.....................................................................................................................2217.0070310000300
...............................................................................................................TTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2017.0070310000201
.............................................................................................................CTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................2216.0060210100200
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGC.......................................................................................................................2116.0060420000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTT......................................................................................................................................................................2516.0060300000030
.................................................................................................................GGTATTCTAGCTGTAGA.........................................................................................................................................................................1716.0060000000015
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGC.......................................................................................................................2216.0060320100000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCC......................................................................................................................2216.0060060000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTC......................................................................................................................................................................2516.0060100000140
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCC......................................................................................................................2316.0060060000000
..................................................................................................................GTATTCTAGCTGTAGA.........................................................................................................................................................................1616.0060000000204
..............................................................................................................TTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2416.0060600000000
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................2225.50110010900100
..................................................................................................................................................................AAGCTTTTATACCAAAGCTC.....................................................................................................................2015.0050300000200
............................................................................................................TCTTTGGTATTCTAGCTGTAGCA........................................................................................................................................................................2315.0050100100300
droPer2
T----------------------------------------------------CTCCT----------------------------------TTAAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAA-CAACGCA------------CC--------AACAA-CAA---C---AACAG----------------------TAAC------TACAGTA-ATCAGAAAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21176087.0076087270992946035032005344610574
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22122292.00222928941894310435246902151
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2012514.00251413247633019
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................1812194.002194218730130
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................2211167.0011671114438020
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2411069.001069631329941410
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201810.0081058393304160228
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................211762.0076227562002
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................231556.005561682932081849
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................231482.0048216825441658
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221322.003221021137253441
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................211284.00284162151521224
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................211226.0022602203210
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................191191.001919554711159
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................191160.00160612110887
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251131.0013158619003
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................211103.001038462182
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................21188.0088214764712
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................22169.00691680000
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................20163.00632493324
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................24139.003918413211
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................24137.003712214000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22134.00341330000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................23134.00340340000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................24132.00323200000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22129.00291280000
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................19128.00280280000
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22128.00283931111
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................18127.00272221020
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................23122.00221551010
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24121.00212001000
.............................................................................................................CTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................20121.00210210000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................26119.00192161000
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................22119.0019640027
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................22119.00190190000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25117.00170125000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................24113.00131012000
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19113.0013191002
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21113.0013070015
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................24113.00130130000
............................................................................................................TCTTTGGTATTCTAGCTGC............................................................................................................................................................................1919.009900000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................2018.008080000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2317.007070000
............................................................................................................TCTTTGGTATTCTAGCTGTCT..........................................................................................................................................................................2117.007002050
..................................................................................................................................TTGTTT-TT---TGCACATTGTATATCATC...........................................................................................................................................2617.007070000
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................2016.006030030
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................2316.006060000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................2416.006501000
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................2216.006411000
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................1916.006024000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2416.006200004
............................................................................................................TCTTTGGTATTCTAGCTA.............................................................................................................................................................................1816.006600000
............................................................................................................TCTTTGGTATTCTAGCTGG............................................................................................................................................................................1935.67171600010
............................................................................................................TCTTTGGTATTCTAGCTTAG...........................................................................................................................................................................2055.40270270000
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2115.005140000
............................................................................................................TCTTTGGTATTCTAGCTGTAAC.........................................................................................................................................................................2214.004400000
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................1814.004040000
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................2014.004040000
............................................................................................................TCTTTGGTATTCTAGCTGTG...........................................................................................................................................................................2014.004200020
.............................................................................................................CTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2113.003030000
............................................................................................................TCTTTGGTATTCTAGCTGTAGGA........................................................................................................................................................................2313.003120000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................2513.003210000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................2213.003030000
............................................................................................................TCTTTGGTATTCTAGCTGTAGCA........................................................................................................................................................................2313.003012000
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................1962.50150150000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTT......................................................................................................................................................................2512.002020000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGG.......................................................................................................................................................................2412.002200000
............................................................................................................TCTTTGGTATTCTAGCTGTACT.........................................................................................................................................................................2212.002000020
............................................................................................................TCTTTGGTATTCTAGCTGTAGACAA......................................................................................................................................................................2512.002110000
droWil2
TT-----------------TTCCACATTTTC-TTCCTCC-------------CCTCTTCACCA----TC--TTTTCCTCTCCCTCC---ATCATCATTTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGC-CAACGCA------------CCCC------AAAAA-CAA---AATAAAATGCAACAAAA-------TA----ATAA------CTG---TACACAATATTASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21248832.5097665432451171127132745612540
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22233818.00676361234518245993339122141
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2423126.50625367125011491015
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................1821843.50368736832020
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................232871.0017423557291360540
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................212802.5016053154324611
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................232775.50155156803667511
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................222652.5013051246163346
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................202541.50108312101552724
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................252296.50593225113381
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................222279.005587415740557
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................202226.00452152132259647
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................242220.00440611413181
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................212174.003482190014214
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................202138.5027713142210416
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................192106.5021316626579
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................242105.00210544179018
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................222100.50201152193198
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................212100.5020117733144
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................21277.50155214744241
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................19276.0015266264434
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25266.501330350980
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................22259.5011901010135
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................23251.50103098050
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................26246.50930390540
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21240.508110193436
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22239.00781650120
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................21235.507141014511
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22234.0068065030
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23233.50674161451
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................24222.0044080360
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................23220.50411550210
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19220.5041028292
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................22218.50371240183
..................................................................................................................................TTGTTT-TT---TGCACATTGTATATCATC...........................................................................................................................................26218.5037040330
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24218.5037520300
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................22215.0030120261
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................19315.00450203211
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................18213.5027316053
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................22213.50270110160
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................24213.0026119141
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................24212.5025022030
............................................................................................................TCTTTGGTATTCTAGCTGG............................................................................................................................................................................19211.5023230000
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................24211.5023330170
.............................................................................................................CTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................23210.0020015050
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................2429.0018110160
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................1828.5017016010
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2128.001608080
............................................................................................................TCTTTGGTATTCTAGCTGTAGATG.......................................................................................................................................................................2428.0016040120
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2327.5015015000
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................2027.001407070
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................2327.001406071
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................2236.6720100190
..............................................................................................................TTTGGTATTCTAGCTGTAGATTA......................................................................................................................................................................2326.5013000130
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................2026.0012012000
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................1925.5011010010
............................................................................................................TCTTTGGTATTCTAGCTGC............................................................................................................................................................................1935.0015150000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAT......................................................................................................................................................................2525.001003070
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................2525.001005050
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................1925.001002071
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................2224.00803050
.............................................................................................................CTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................2423.50704030
.............................................................................................................CTTTGGTATTCTAGCTGT............................................................................................................................................................................1823.50707000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2223.50707000
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................2123.00606000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2523.00603030
............................................................................................................TCTTTGGTATTCTAGCTGTAGCAA.......................................................................................................................................................................2423.00600060
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAT......................................................................................................................................................................2522.50500041
............................................................................................................TCTTTGGTATTCTAGCTGTG...........................................................................................................................................................................2022.50530101
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................2022.50521200
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTA.....................................................................................................................2222.50505000
............................................................................................................TCTTTGGTATTCTAGCTGTAGGA........................................................................................................................................................................2322.50510040
...............................................................................................................TTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2122.00400040
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTA......................................................................................................................................................................2522.00401030
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2322.00402020
............................................................................................................TCTTTGGTATTCTAGCTGTAGGAA.......................................................................................................................................................................2422.00400040
..............................................................................................................TTTGGTATTCTAGCTGTAGATTAA.....................................................................................................................................................................2422.00400040
............................................................................................................TCTTTGGTATTCTAGCTA.............................................................................................................................................................................1831.67541000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTAA.....................................................................................................................................................................2621.50300030
............................................................................................................TCTTTGGTATTCTAGCTGAG...........................................................................................................................................................................2021.50330000
..............................................................................................................TTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................2021.50330000
..............................................................................................................TTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2421.50300030
................................................................................................................................................................TAAAGCTTTTATACCAAA.........................................................................................................................1821.50300030
...............................................................................................................TTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2021.50301020
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAC.....................................................................................................................................................................2621.50300030
............................................................................................................TCTTTGGTATTCTAGCTGTGA..........................................................................................................................................................................2121.50301020
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAG........................................................................................................................2121.50301002
................................................................................................................TGGTATTCTAGCTGTAGAT........................................................................................................................................................................1921.00201001
droVir3
CA-----------------------------------------------------------CACACACA--CA------------A---TT-TTCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------TACAGTTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGC-CACCGCCC--------GCACC--------CG---CCAACATC---AGCATCAACAAAA--------------A--CA---A------------AGACAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2211494838.001494838254632501493120891178414002037059798921645331542914572265431266982731551042176116323188278913712813509157344811335216563996473113186337112824511797457642440217510380345285529474398750431755438270297249179129272651159478615552555158761424524310133500206753198382144174137447192050157603280389314134253021930390
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................211527669.0052766934717652105095356979219917063701415627501495760527633127694602175772871226131160631139894824355164255442705660132914899837843899372246454772367774117241142829262232152946245224132891716264621792787365705832882289893119420495345323529325616218502993229111175278985111992322822559
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................241115534.00115534121386914146829976201731258785649959742211133171009135573321201127484812662199321448448140062064350840122424181814761499732300117248812014959151695716006873721592546146015431607155860272793322086928701
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................23160413.0060413919540353565113115554110699711020111058012166231163342782416911293651391496191762424328443629751741171681001112881060178130107441101344481851200712708901665108320992602313669816524
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18133224.0033224339662448110822101100110070286441884722132529146151403265533985447742384127131240690000102843064236176679842784602441328092628598367349
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................23132449.0032449343540579279313101010122411023401891117042318352230213425455155884612516631147227125201198464113839106181014538710716207200193339249925762632217223881739153520951799182363383422112032
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................25120087.002008700305158241544142191853670000017002054421636702743711561163689701472434102641532011111100000001201005282533034264910771031347382778677641051812751368
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................24112426.0012426315318502444935118491060100103001750366160551065044804755281414143035000120001223000305816371630120028434920518928620359857272318051659
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2215431.00543127814185475338127223500003010119181240515269154161214111720031412001231320004151401216254214313718672301394569492198108113257272
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2413726.003726964231243344209747153102306143619183426181251924416321626561401212112403311200111147112152983033512232352091592191621897786268261
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................2213168.00316800806261170511010411916251315028381219197298252482994483253123603610500000001000000000000004433635900084718400000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2613104.00310400223701017024164000000000204831923400019936111417173880000000000000000000020003922578505220163541161408992237224
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2012855.0028553101034175616384931603120110005027242233155381051930914111510200001020001020039450133911499139309258179215224164905567138135
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................2512820.00282000151171380604278000000201204345935913021572951822261269810000000000011000000300130173203031971310610281179781171177
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................2012554.0025541037141985171123225465133102813715153414918239253839737936642337232312185791101010112024100024223139044110496676566403070465233367677
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................2212224.0022241551021916307291170210112103401331734112213202122594011002010116010000008820002712822381711710171017638197
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................2112080.00208011456467247511200051261346231224148121207016916366472358621819287312711000000000001000001024071664510649373571001
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2211883.001883226122925670213531226026111505341377162227113158715852121000021111110101001261770713151158102996978559484644241125121
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................2411749.00174951348116000101200000020015401101034399158292360001000100000100000101011215226149444735404748986086158197
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................2311687.00168753822192229190664012200010750119991419745035984392997205100011101302101001047122126645754929365761281003313275447
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................2211672.001672419415140283371143201000000010026732102313424722137000000101000001101152601211987849875578985510122530
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2111662.001662138713533142313230001171081392746994819281291094000000002100000100232202178310912914111265869679904946122118
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2111616.00161621126739070131401110000030010101329237636501114812110000100010000000000122032253231416132017011710
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................2411452.001452006601208010020000000003714801201006101581700000000000000000001300045251233139382216132230875671169174
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................1911406.0014069312941114815220519811062175648103911181491581098118211311020223223111210233233011364230150191118791077531771916
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2011090.00109033910042800301630010004004633259712217109535000000000000000000015300010065327303253
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2411054.001054460207131570041201000000440031222392413353240010651011001110101000000200424440372357776759117852114172625
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................221982.0098201101001435164000000000321650000204134100010000000000000000000034737010152804247592869524210496
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211980.00980056111650713146110783256113444240434531641218955521828000000000000000000096265012212620022220161028
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................211953.0095332264122200724191320530251125251115113327103233112027493617120000000000000000020889045587244912133923214293954
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................241934.0093400164013030201300000000073144100120552230300000010000100000004000501621351033833192119215533267283
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................231812.0081201142120161134421071001004002211810145527183151321122220000000000000100000101013108097331419131622173027206749
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................191476.0047600632823201004313401010051024732101070154875174919000000000000000000046701121811181017341314926129
............................................................................................................TCTTTGGTATTCTAGCTGTAGCAA.......................................................................................................................................................................241449.00449000071180104000000000100231000000011225342830000000000000000000001000001007959000000330000
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................191422.0042211412192440110200230000000045135863230337513740000000000000000000100011171014269116815515111511
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................241315.003150040200020114200000010010241100210264211000000000000000000002000315147227166266161092631
............................................................................................................TCTTTGGTATTCTAGCTGTAGACC.......................................................................................................................................................................241309.0030916034110000001000000030010000321200000022001111000230002015100101051725247526363055431
............................................................................................................TCTTTGGTATTCTAGCTGTAGATG.......................................................................................................................................................................241300.003000040206020001400000010033044130060556141000000010000000000041000926342314348164149162721
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................251290.0029000231020001020000000000221200000101300900000000000010000001000010526514391634912132638
............................................................................................................TCTTTGGTATTCTAGC...............................................................................................................................................................................161264.00264000000000000000000000000000000000000000012111615101715112014341391555792600000000000000000000
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................221226.002260011120401406123000000000611531000503107250100000000000000000010001251620143230389105912
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................211226.00226001000100000030000000000111200001002101000000000100000000000000122122151921641314131162220
............................................................................................................TCTTTGGTATTCTAGCTGTAGCA........................................................................................................................................................................231226.00226000000100000000000000001000000000111738000000000000000000000100000667736000010130000
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................211213.0021315421542100000033021100320010104111130611111800000000000000000004131011103601000071201
............................................................................................................TCTTTGGTATTCTAGCTGTAGAACA......................................................................................................................................................................251180.00180002000200000000000000003000000000042827111600000000000000000000000000141393516211014513
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................231171.001710096010203000100000000002425200006021113711000000000000000000010000010110000101141
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................181170.001700017062190200122000000100132363300352134674000000000000000000002102835630142152044
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAT......................................................................................................................................................................251166.00166001000001010100100001001219200003049647000000000000000000000000422725104400345311010
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................181160.0016000180901600010020100002001883571300234712010000000000000000000001002036000300170176
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAT......................................................................................................................................................................251156.0015600000031101010000000000112330010804235701000000000100000000000037152315030002548157
..............................................................................................................TTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................241122.0012200000000000010000000000012510000100234500000000000000000000000001171790020006681714
............................................................................................................TCTTTGGTATTCTAGCTGTAGACAA......................................................................................................................................................................251109.00109002030000000000000000006101000003017649000000000000000000001000201715410000043568
..............................................................................................................TTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................221109.00109400040301110100000005005011025020101002300000000000000000000000043279821105120111
..............................................................................................................TTTGGTATTCTAGCTGTAGATTAAA....................................................................................................................................................................251107.00107000000000011100000000000108200003021823000000000000000000001000031616600010093487
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTA.....................................................................................................................221106.001060029000000000000000000000119010010028210100000000000000000000000193000000100000000
..............................................................................................................TTTGGTATTCTAGCTGTAGATTA......................................................................................................................................................................231103.0010300100010202012000000000010200000200311000000000000000000000200002741143237884559
............................................................................................................TCTTTGGTATTCTAGCT..............................................................................................................................................................................17193.00930000000000000000000000000000000000000000100000000000100000000003311111600000013111517
..............................................................................................................TTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................23192.0092001010200000010000000002212000004013337000000000000000000000000229810000000434116
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................21185.008500840000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTAAA....................................................................................................................................................................27179.0079003000000000000000000000001300003034300000000000000000000000000012071000011042247
..................................................................................................................................TTGTTT-T------TACAGTTTGTATCATC...........................................................................................................................................23178.007800210000000000001000001045785302201320200000000000000000000000019600002020000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTAA.....................................................................................................................................................................26174.00740011000000000000000000010403010040586430000000000000000000000000283510000031352
..............................................................................................................TTTGGTATTCTAGCTGTAGATTAA.....................................................................................................................................................................24171.00710000000000001000000000011221000030243520000000000000000000010000088502000033167
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTT......................................................................................................................................................................25171.00710020200000001000000001010420022400303221000000002110000000000110674430000020133
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................23168.006800108000000100011000001102137110210232110000000000000000000000006510122000100000
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................22265.0013000000030100011200000000132243303100510010000000000000000000011002312019000000180001
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................22163.006300260001000000000000000000352010002010110000000000000000000000000032470001200010
............................................................................................................TCTTTGGTATTCTAGCTGTAGATCT......................................................................................................................................................................25160.00601002020000000000000000000000131201000002000000000000000000000000034533403642251
............................................................................................................TCTTTGGTATTCTAGCTGTAGATTA......................................................................................................................................................................25159.005900000000000020000001000010221001100201000000000000000000000100011105401052114135
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAG.....................................................................................................................................................................26159.0059000000000000000000000000001000000010112000000000000000000000000001610501010028235
............................................................................................................TCTTTGGTATTCTAGCTGTAGATCA......................................................................................................................................................................25156.00561010100000000000000000020100220101282421000000000000000000000000032600141223010
............................................................................................................TCTTTGGTATTCTAGCTGTAGGAA.......................................................................................................................................................................24155.005500000020300001000000000100000000100210600000000000000000000000040031100000024914
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCA....................................................................................................................23154.005400200000000000000000001030411000105211100000000000000000000000022900000000000000
...............................................................................................................TTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................21154.00540051001010000100000000022120000020252120000000000000000000000004143400000040004
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................20153.005300162000000000021010002111152310220122000000000000000000000000000102200000000000
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22152.005200421000000000000000000000001000010000100000000000000000000000000001100000101020
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................22150.00500061100000000010000000107276100010102110000000000000000000000002400002003000000
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................23145.004500140000000000000000000000001000000000000020030514020101000000000221020010000021
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................23145.00450110000000000000000000010000110100001110000000000000000000010000036400200112295
.................................................................................................................GGTATTCTAGCTGTAGA.........................................................................................................................................................................17144.00440000000000000000000000000000000000000000000000000000000000000001568900000070233
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................20138.003800341000000000000000000001001000000001000000000000000000000000000000000000000000
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................19337.67113001030140924032100001320931364502334112113000000000000000000000200300200000000000
............................................................................................................TCTTTGGTATTCTAGCTGTAGGA........................................................................................................................................................................23134.00340000001000000000000000000100001000110000000000000000000000010000012100000015468
droMoj3
TACAATATATAACTCACTGTTCTATATGTTTTT--------TG--------------TC-TCACCCACACAATTGCCA-------CTC-TT--TCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------CACATATTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGA-CACCGCCCAACCGCTCGCACA--------ATCCGCCAA---C---ATCAG-----------------------------------------TAAAACAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................22156810.00568102626841969561220219722198
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21142360.00423602225752261901246355204993
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2413001.0030012172314141939785
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2312943.0029439606755189511
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2312336.00233614315192176559
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2112322.0023222219101983
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2011791.0017911765612143
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................2111767.001767322141414260
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................2211015.0010151092009040
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................251756.0075668520223314
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201630.0063030419173717776
................................................................................................................................................................TAAAGCTTTTATACCAAAGCC......................................................................................................................211407.0040700004070
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................201320.0032015931241177
............................................................................................................TCTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................241266.0026613125011054
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................231242.0024224100010
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................221220.0022032552310721
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................241180.001805426587512
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................211169.001691151266219
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................201150.0015070001430
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................191146.001461061525810
............................................................................................................TCTTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................231144.00144303201027
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................221133.0013312800050
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................191132.00132784512303
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................221130.00130313074499
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................231128.00128181001090
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................211126.001262084925195
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................221121.001212120137555
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................261104.001048731184
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................22185.00857800070
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................22184.008411100720
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................25182.0082561301120
..................................................................................................................................TTGTTT-T------CACATATTGTATCATC...........................................................................................................................................23180.00803600710
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21177.007724932363
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................19170.007033101305
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................24170.0070180431332
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................18167.00672011630
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGC.......................................................................................................................22159.00590000590
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................22158.0058191543152
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................21149.00494101412
.............................................................................................................CTTTGGTATTCTAGCTGTAGAAAA......................................................................................................................................................................24236.00727200000
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................18131.00311831063
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................20131.00312500060
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................23129.00292032220
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCC......................................................................................................................23128.00280000280
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................18126.002615000110
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAC.......................................................................................................................................................................24124.00242301180
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTT.....................................................................................................................22124.002410000140
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAG.......................................................................................................................................................................24119.00191110070
..............................................................................................................TTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................22118.0018580050
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................19118.00181800000
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCTC.....................................................................................................................23117.00172000150
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................21117.00171200050
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCC......................................................................................................................22117.00170000170
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGC.......................................................................................................................21116.00161000141
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................23116.00161600000
..............................................................................................................TTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................21115.0015710070
..............................................................................................................TTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................22214.50292410040
.............................................................................................................CTTTGGTATTCTAGCTGTAGATA.......................................................................................................................................................................23113.00131300000
................................................................................................................................................................TAAAGCTTTTATACCAAAG........................................................................................................................19113.00131100020
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................20112.0012701031
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTA.....................................................................................................................22110.0010500050
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................22110.00101000000
............................................................................................................TCTTTGGTATTCTAGCTGTATG.........................................................................................................................................................................2229.50190300160
.............................................................................................................CTTTGGTATTCTAGCTGTAGATAAA.....................................................................................................................................................................2519.009900000
..............................................................................................................TTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2219.009101070
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................2418.008120050
.............................................................................................................CTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2117.007700000
..............................................................................................................TTTGGTATTCTAGCTGTAGAC........................................................................................................................................................................2117.007000070
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAC......................................................................................................................................................................2517.007210040
...............................................................................................................TTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2017.007300040
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................2317.007120031
............................................................................................................TCTTTGGTATTCTAGCTGTAGTAA.......................................................................................................................................................................2417.007420001
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCC....................................................................................................................2316.006000060
...............................................................................................................TTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2016.006600000
............................................................................................................TCTTTGGTATTCTAGCTGTATC.........................................................................................................................................................................2226.0012131151
............................................................................................................TCTTTGGTATTCTAGCTGTAGGAA.......................................................................................................................................................................2416.006230001
.............................................................................................................CTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................2216.006600000
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCT....................................................................................................................2316.006000060
.............................................................................................................CTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2016.006600000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................2416.006600000
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2316.006500010
................................................................................................................TGGTATTCTAGCTGTAGAT........................................................................................................................................................................1915.005500000
..............................................................................................................TTTGGTATTCTAGCTGTAGATTAAA....................................................................................................................................................................2515.005500000
............................................................................................................TCTTTGGTATTCTAGCTGTAGAGA.......................................................................................................................................................................2415.005210020
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCA....................................................................................................................2315.005200030
...............................................................................................................TTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2115.005500000
............................................................................................................TCTTTGGTATTCTAGCTGTATT.........................................................................................................................................................................2215.005301010
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAT......................................................................................................................................................................2514.004300010
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCTC.....................................................................................................................2414.004000040
............................................................................................................TCTTTGGTATTCTAGCTGTAGTC........................................................................................................................................................................2314.004300001
droGri2
--------------------------------------------------------------G----CA--AT------------T---TCTTTCAT-TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CT------ATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGC-CACCGCCT--------GCACCCCGCCACCAACA----G---C---AACAGCAACAAAAACAACAAAA----CTAG------CTGCAATGGATAACGTAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................TCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................21111451.001145147226729
............................................................................................................TCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2213941.00394121911750
.............................................................................................................CTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................201399.003993918
............................................................................................................TCTTTGGTATTCTAGCTGTA...........................................................................................................................................................................201195.0019513164
.............................................................................................................CTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................211188.001881862
............................................................................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................231109.001097930
................................................................................................................................................................TAAAGCTTTTATACCAAAGCT......................................................................................................................211102.001021020
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTC.....................................................................................................................22162.0062611
............................................................................................................TCTTTGGTATTCTAGCTGT............................................................................................................................................................................19148.00483513
............................................................................................................TCTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................22145.00452124
............................................................................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................23138.00382612
..............................................................................................................TTTGGTATTCTAGCTGTAG..........................................................................................................................................................................19136.0036279
..............................................................................................................TTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................20133.00332310
............................................................................................................TCTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................24111.001147
..............................................................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................21111.001138
............................................................................................................TCTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................21110.001046
.................................................................................................................................................................AAAGCTTTTATACCAAAGCT......................................................................................................................2019.00990
..............................................................................................................TTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2219.00936
............................................................................................................TCTTTGGTATTCTAGCTGTAGG.........................................................................................................................................................................2219.00981
.............................................................................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................................................................................2218.00880
...............................................................................................................TTGGTATTCTAGCTGTAG..........................................................................................................................................................................1818.00871
...........................................................................................................TTCTTTGGTATTCTAGCTGTAG..........................................................................................................................................................................2217.00770
............................................................................................................TCTTTGGTATTCTAGCTGTAA..........................................................................................................................................................................2117.00743
............................................................................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................................................................................2316.00642
............................................................................................................TCTTTGGTATTCTAGCTGTAC..........................................................................................................................................................................2116.00624
............................................................................................................TCTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................2215.00532
............................................................................................................TCTTTGGTATTCTAGCTG.............................................................................................................................................................................1815.00550
...........................................................................................................TTCTTTGGTATTCTAGCTGTAGA.........................................................................................................................................................................2315.00550
.............................................................................................................CTTTGGTATTCTAGCTGTA...........................................................................................................................................................................1915.00550
.............................................................................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................................................................................2214.00440
..............................................................................................................................................................TCTAAAGCTTTTATACCAAAGCT......................................................................................................................2314.00440
............................................................................................................TCTTTGGTATTCTAGCTAG............................................................................................................................................................................1913.00303
.................................................................................................................................................................AAAGCTTTTATACCAAAGCTC.....................................................................................................................2113.00330
.............................................................................................................CTTTGGTATTCTAGCTGTAGT.........................................................................................................................................................................2113.00330
.............................................................................................................CTTTGGTATTCTAGCTGTAGATT.......................................................................................................................................................................2313.00330
...............................................................................................................TTGGTATTCTAGCTGTAGA.........................................................................................................................................................................1913.00330
..................................................................................................................................................................AAGCTTTTATACCAAAGCTC.....................................................................................................................2012.00220
............................................................................................................TCTTTGGTATTCTAGCTGTT...........................................................................................................................................................................2012.00211
................................................................................................................................................................TAAAGCTTTTATACCAAAGC.......................................................................................................................2012.00220
.............................................................................................................CTTTGGTATTCTAGCTGTAT..........................................................................................................................................................................2012.00220
................................................................................................................TGGTATTCTAGCTGTAGA.........................................................................................................................................................................1812.00220
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAA.......................................................................................................................................................................2412.00211
............................................................................................................TCTTTGGTATTCTAGCTGTAGAAAT......................................................................................................................................................................2511.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATG.......................................................................................................................................................................2411.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGGA........................................................................................................................................................................2311.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGCGA.......................................................................................................................................................................2411.00110
.....................................................................................................................................................CTTGTATCATCTAAAGCTT...................................................................................................................................1911.00110
...........................................................................................................TTCTTTGGTATTCTAGCTGT............................................................................................................................................................................2011.00110
.............................................................................................................CTTTGGTATTCTAGCTGTAGC.........................................................................................................................................................................2111.00110
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTCT....................................................................................................................2311.00110
...............................................................................................................................................................CTAAAGCTTTTATACCAAAGCT......................................................................................................................2211.00110
.............................................................................................................CTTTGGTATTCTAGCTGTAGGG........................................................................................................................................................................2211.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAA......................................................................................................................................................................2511.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGGG........................................................................................................................................................................2311.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATC.......................................................................................................................................................................2411.00110
............................................................................................................TCTTTGGTATTCTAGCTGTG...........................................................................................................................................................................2011.00101
................................................................................................................................................................TAAAGCTTTTATACCAAAGCTT.....................................................................................................................2211.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGACA.......................................................................................................................................................................2411.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGGCG.......................................................................................................................................................................2411.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGATAT......................................................................................................................................................................2511.00110
............................................................................................................TCTTTGGTATTCTAGCTGTTT..........................................................................................................................................................................2111.00101
............................................................................................................TCTTTGGTATTCTAGCTGTGA..........................................................................................................................................................................2111.00101
..............................................................................................................TTTGGTATTCTAGCTGTA...........................................................................................................................................................................1811.00110
............................................................................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................................................................................2311.00110
.............................................................................................................CTTTGGTATTCTAGCTGTAGCGA.......................................................................................................................................................................2320.50110
............................................................................................................TCTTTGGTATTCTAGCTTAG...........................................................................................................................................................................20130.23303

Generated: 10/20/2015 at 06:47 PM