ID:

dan-mir-6-3

 Coordinate:

scaffold_13266:9732122-9732197 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.3 -33.0 -33.0

Flybase annnotation

pre_miRNA [Dana\mir-6-3-RM]; utr3 [utr3_minus_3613]; miRNA [Dana\miR-6-3-RA]

No Repeatable elements found

mature

  1. dan-mir-6-1  scaffold_13266:9731862-9731883 +
  2. dan-mir-6-2  scaffold_13266:9732020-9732041 +
  3. dan-mir-6-3  scaffold_13266:9732170-9732191 +
star

Sense Strand Reads

TTTGTGGCACGCATTTGTGTCACGTTGGTGGACAGAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTTATTCGCATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTCCTGCGAACCTGCGTTCCGGATACAATATAGGAT

*******************************************.((((..((((.((((((((((((((((((.((((((((.............)))))))))))))))))))))))))).)))).))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 M044

female body

 V039

embryo

 V106

head

 V105

male body		 V055

head
..................................................................................................TATCACAGTGGCTGTTCTTTTT........................................................ 22 0 3 15043.33 45130 44752 367 0 4 7 0
..................................................................................................TATCACAGTGGCTGTTCTTTT......................................................... 21 0 3 3049.33 9148 9039 97 2 8 2 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTT....................................................... 23 0 1 2039.00 2039 2030 9 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTTTT........................................................ 22 1 3 667.33 2002 2002 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 493.00 1479 1479 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTC........................................................ 22 1 3 462.00 1386 1386 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 369.00 1107 1107 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTT.......................................................... 20 0 3 276.00 828 792 26 0 2 8 0
..................................................................................................TATTACAGTGGCTGTTCTTTT......................................................... 21 1 3 133.67 401 401 0 0 0 0 0
..................................................................................................TTTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 123.33 370 370 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 111.00 111 111 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 101.00 303 303 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTTT......................................................... 21 1 3 76.67 230 230 0 0 0 0 0
..........................................................AGGGAACGGTCGCTGCTGATGTA............................................................................................... 23 0 1 65.00 65 43 1 20 1 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTC......................................................... 21 1 3 57.67 173 172 0 0 1 0 0
..................................................................................................GATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 57.33 172 171 1 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 57.00 57 57 0 0 0 0 0
..................................................................................................CATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 49.00 147 146 1 0 0 0 0
..................................................................................................TATCACAGCGGCTGTTCTTTTT........................................................ 22 1 3 40.00 120 117 3 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 40.00 40 40 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTC.......................................................... 20 1 3 37.00 111 111 0 0 0 0 0
...................................................................................................ATCACAGTGGCTGTTCTTTTT........................................................ 21 0 3 35.67 107 67 40 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTC....................................................... 23 1 3 34.67 104 104 0 0 0 0 0
..................................................................................................AATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 34.33 103 102 1 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTA....................................................... 23 1 3 33.67 101 98 3 0 0 0 0
..................................................................................................TATCTCAGTGGCTGTTCTTTTT........................................................ 22 1 3 32.67 98 98 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGCTCTTTTT........................................................ 22 1 3 32.00 96 95 1 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTTT...................................................... 24 1 1 32.00 32 32 0 0 0 0 0
.................................................................................................CTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 26.00 78 78 0 0 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTTTT........................................................ 22 1 3 24.00 72 72 0 0 0 0 0
..................................................................................................TGTTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 23.67 71 71 0 0 0 0 0
..................................................................................................TTTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 22.33 67 67 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 17.67 53 53 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTT........................................................... 19 0 3 17.33 52 39 8 0 3 2 0
..................................................................................................TATCAGAGTGGCTGTTCTTTTT........................................................ 22 1 3 17.33 52 52 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGATCTTTTT........................................................ 22 1 3 14.67 44 44 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTTTC........................................................ 22 2 3 14.67 44 44 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCCTTTT........................................................ 22 1 3 14.33 43 43 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTCCTTTTT........................................................ 22 1 3 14.33 43 42 1 0 0 0 0
..................................................................................................TATCACAGTGGCTTTTCTTTTT........................................................ 22 1 3 12.67 38 38 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTGT........................................................ 22 1 3 11.33 34 34 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGCTGATGTA............................................................................................... 23 1 1 11.00 11 10 0 1 0 0 0
..................................................................................................TATCATAGTGGCTGTTCTTTTT........................................................ 22 1 3 11.00 33 32 1 0 0 0 0
..........................................................ATGGAACGGTCGCTGCTGATGTA............................................................................................... 23 1 1 11.00 11 11 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTTTTTTT........................................................ 22 1 3 10.67 32 30 0 2 0 0 0
..................................................................................................TATCACAGTGGCTGTGCTTTTT........................................................ 22 1 3 10.67 32 32 0 0 0 0 0
..................................................................................................GATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 10.67 32 32 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTT.......................................................... 20 1 3 10.33 31 31 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTCTT........................................................ 22 1 3 10.33 31 31 0 0 0 0 0
..................................................................................................TATCACAGGGGCTGTTCTTTTT........................................................ 22 1 3 10.00 30 11 18 1 0 0 0
..........................................................AGGGAACGGTCGCTGCTGATGT................................................................................................ 22 0 1 10.00 10 9 0 1 0 0 0
..................................................................................................TTTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 10.00 10 10 0 0 0 0 0
..................................................................................................TATCACAGTGGCCGTTCTTTTT........................................................ 22 1 3 9.67 29 28 0 0 1 0 0
..................................................................................................TATCACAGTGACTGTTCTTTTT........................................................ 22 1 3 9.33 28 26 0 2 0 0 0
..................................................................................................TATCACGGTGGCTGTTCTTTTT........................................................ 22 1 3 9.33 28 27 0 1 0 0 0
..................................................................................................TATCGCAGTGGCTGTTCTTTTT........................................................ 22 1 3 9.33 28 28 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 9.33 28 28 0 0 0 0 0
..................................................................................................TACTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 9.33 28 28 0 0 0 0 0
...................................................................................................ATCACAGTGGCTGTTCTTTTTT....................................................... 22 0 1 9.00 9 5 4 0 0 0 0
..................................................................................................TATCACAGCGGCTGTTCTTTTTT....................................................... 23 1 1 9.00 9 9 0 0 0 0 0
..................................................................................................TATCACAGTTGCTGTTCTTTTT........................................................ 22 1 3 9.00 27 26 0 0 1 0 0
.....................................................................................................CACAGTGGCTGTTCTTTTT........................................................ 19 0 3 8.67 26 26 0 0 0 0 0
....................................................................................................TCACAGTGGCTGTTCTTTTT........................................................ 20 0 3 8.00 24 19 5 0 0 0 0
..................................................................................................TATCTCAGTGGCTGTTCTTTT......................................................... 21 1 3 7.67 23 23 0 0 0 0 0
..................................................................................................TATCACAGCGGCTGTTCTTTT......................................................... 21 1 3 7.33 22 19 3 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 7.00 21 21 0 0 0 0 0
..........................................................AGGGAACGGTCGCTGCTGATGC................................................................................................ 22 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTCTTTT....................................................... 23 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................TATCACAGAGGCTGTTCTTTTT........................................................ 22 1 3 7.00 21 15 6 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTGTTTTT........................................................ 22 1 3 6.67 20 19 0 1 0 0 0
..................................................................................................TATCACAGTGGTTGTTCTTTTT........................................................ 22 1 3 6.67 20 20 0 0 0 0 0
..................................................................................................CATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 6.67 20 20 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTTT........................................................ 22 1 3 6.67 20 17 0 1 1 1 0
..................................................................................................AATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 6.33 19 19 0 0 0 0 0
..................................................................................................TATCACAGTCGCTGTTCTTTTT........................................................ 22 1 3 6.33 19 19 0 0 0 0 0
......................................................................................................ACAGTGGCTGTTCTTTTT........................................................ 18 0 3 6.00 18 18 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCT............................................................ 18 0 3 6.00 18 18 0 0 0 0 0
...................................................................................................ATCACAGTGGCTGTTCTTTT......................................................... 20 0 3 6.00 18 11 7 0 0 0 0
..................................................................................................GATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 6.00 6 6 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTT.......................................................... 20 1 3 5.67 17 17 0 0 0 0 0
..................................................................................................TATCACACTGGCTGTTCTTTTT........................................................ 22 1 3 5.67 17 17 0 0 0 0 0
..................................................................................................TATCACATTGGCTGTTCTTTTT........................................................ 22 1 3 5.67 17 17 0 0 0 0 0
..................................................................................................TATCACAGTAGCTGTTCTTTTT........................................................ 22 1 3 5.67 17 15 0 2 0 0 0
..................................................................................................TATCACAGTGGCTGCTCTTTT......................................................... 21 1 3 5.33 16 16 0 0 0 0 0
.................................................................................................CTATCACAGTGGCTGTTCTTTT......................................................... 22 1 3 5.33 16 15 1 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTA........................................................ 22 1 3 5.33 16 15 0 0 1 0 0
..................................................................................................TATCACAATGGCTGTTCTTTTT........................................................ 22 1 3 5.33 16 16 0 0 0 0 0
..................................................................................................TATCACAGTTGCTGTTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................TTTCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 5.00 15 15 0 0 0 0 0
..................................................................................................AATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................CATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTCTTT........................................................ 22 1 3 5.00 15 15 0 0 0 0 0
..................................................................................................TGTTACAGTGGCTGTTCTTTTTT....................................................... 23 2 1 5.00 5 5 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCCTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTTTTTT...................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTGTT........................................................ 22 1 3 4.67 14 13 0 1 0 0 0
.................................................................................................CGATCACAGTGGCTGTTCTTTTT........................................................ 23 2 3 4.67 14 14 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTG......................................................... 21 1 3 4.33 13 13 0 0 0 0 0
..................................................................................................TATCACAGTGGCTTTTCTTTT......................................................... 21 1 3 4.33 13 13 0 0 0 0 0
..................................................................................................TATCACAGTGGCTATTCTTTTT........................................................ 22 1 3 4.33 13 13 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGCTCTTTTT........................................................ 22 2 3 4.33 13 13 0 0 0 0 0
..................................................................................................TATCACAGTGGGTGTTCTTTTT........................................................ 22 1 3 4.33 13 13 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTCTTT....................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................................................................TATCACAGTGCCTGTTCTTTTT........................................................ 22 1 3 4.00 12 11 0 1 0 0 0
..........................................................AGCGAACGGTCGCTGCTGATGTA............................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGCTGATGTA............................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0
..................................................................................................TTTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 4.00 12 12 0 0 0 0 0
..................................................................................................TATCACAGTGGCTTTCTTTTT......................................................... 21 3 12 4.00 48 45 3 0 0 0 0
..................................................................................................TATCACAGTGGCTGATCTTTT......................................................... 21 1 3 4.00 12 12 0 0 0 0 0
..................................................................................................TATCACAGAGGCTGTTCTTTTTT....................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTC......................................................... 21 2 3 3.67 11 11 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTCCTTTT......................................................... 21 1 3 3.67 11 10 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGTACTTTTT........................................................ 22 1 3 3.67 11 11 0 0 0 0 0
..................................................................................................TAACACAGTGGCTGTTCTTTTT........................................................ 22 1 3 3.67 11 11 0 0 0 0 0
...................................................................................................AGCACAGTGGCTGTTCTTTTT........................................................ 21 1 3 3.33 10 10 0 0 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTTT......................................................... 21 1 3 3.33 10 10 0 0 0 0 0
..................................................................................................TGTTACAGTGGCTGTTCTTTT......................................................... 21 2 3 3.33 10 10 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTG........................................................ 22 1 3 3.33 10 9 1 0 0 0 0
..................................................................................................TATCACAATGGCTGTTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTATTTTT........................................................ 22 1 3 3.00 9 9 0 0 0 0 0
..........................................................AGAGAACGTTCGCTGTTGATGT................................................................................................ 22 3 1 3.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................................................... 24 2 3 3.00 9 7 1 0 0 1 0
..................................................................................................TATCACAGTGGCTGTTCTTTTCT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TACCACAGCGGCTGTTCTTTTT........................................................ 22 2 3 3.00 9 9 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTCCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..........................................................AGGTAACGGTCGCTGCTGATGTA............................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCAGTTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTTTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TCTATCACAGTGGCTGTTCTTTTT........................................................ 24 1 3 2.67 8 8 0 0 0 0 0
..................................................................................................TATCAGAGTGGCTGTTCTTTT......................................................... 21 1 3 2.67 8 8 0 0 0 0 0
..................................................................................................TATTACAGCGGCTGTTCTTTTT........................................................ 22 2 3 2.67 8 8 0 0 0 0 0
..................................................................................................TATCACAGAGGCTGTTCTTTT......................................................... 21 1 3 2.67 8 6 2 0 0 0 0
..................................................................................................TATTTCAGTGGCTGTTCTTTTT........................................................ 22 2 3 2.67 8 8 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCGTTTT........................................................ 22 1 3 2.67 8 8 0 0 0 0 0
..................................................................................................TATCACAGTGTCTGTTCTTTTT........................................................ 22 1 3 2.67 8 8 0 0 0 0 0
..................................................................................................TATCACAGTTGCTGTTCTTTT......................................................... 21 1 3 2.33 7 7 0 0 0 0 0
..................................................................................................TATCACAGGGGCTGTTCTTTT......................................................... 21 1 3 2.33 7 1 6 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTATT........................................................ 22 1 3 2.33 7 7 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTC.......................................................... 20 2 3 2.33 7 7 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTGTTT........................................................ 22 1 3 2.33 7 7 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTC.......................................................... 20 2 3 2.33 7 7 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTGCTTTT......................................................... 21 1 3 2.33 7 6 0 0 0 1 0
..................................................................................................TATCACAGTGGCTGTTTTTTT......................................................... 21 1 3 2.33 7 7 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTTCTTTC......................................................... 21 2 3 2.33 7 7 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTT......................................................... 21 1 3 2.33 7 5 0 0 2 0 0
..................................................................................................TTTTACAGTGGCTGTTCTTTTT........................................................ 22 2 4 2.25 9 9 0 0 0 0 0
..................................................................................................TATCACAGTGACTGTTCTTTT......................................................... 21 1 3 2.00 6 6 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................................................... 26 2 1 2.00 2 0 0 2 0 0 0
..................................................................................................TATCACAGTGGCTGATCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................ATGGAACGGTCGCTGCTGATGT................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................ATCACAGTGGCTGTTCTTT.......................................................... 19 0 3 2.00 6 3 3 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTTTTTTTTTT..................................................... 25 3 1 2.00 2 0 0 1 0 0 1
..................................................................................................TATCACAGTGGCTGTTCCTTT......................................................... 21 1 3 2.00 6 6 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTTTT..................................................... 25 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATCTCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATCACAGTGACTGTTCTTTTTT....................................................... 23 1 1 2.00 2 1 0 1 0 0 0
..................................................................................................TATCAGAGTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATCATAGTGGCTGTTCTTTT......................................................... 21 1 3 2.00 6 6 0 0 0 0 0
.................................................................................................CTATCACAGTGGCTGTTCTTTTTT....................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTGTTTTTT....................................................... 23 1 1 2.00 2 1 0 1 0 0 0
..................................................................................................TATCACATTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TACTACAGTGGCTGTTCTTTTTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATTACAGCGGCTGTTCTTTTTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTCTTTTT...................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................TATCACAGTGGTTGTTCTTTT......................................................... 21 1 3 2.00 6 6 0 0 0 0 0
..................................................................................................TATCACAGCGGCTGTTCTTTTC........................................................ 22 2 3 1.67 5 5 0 0 0 0 0
....................................................................................................TCACAGTGGCTGTTCTTTT......................................................... 19 0 3 1.67 5 5 0 0 0 0 0
..............................................................................................GATCTATCACAGTGGCTGTTCTTTTT........................................................ 26 3 3 1.67 5 5 0 0 0 0 0
....................................................................................................TATCAGTGGCTGTTCTTTTT........................................................ 20 2 3 1.67 5 5 0 0 0 0 0
..................................................................................................TATCACAGTGCCTGTTCTTTT......................................................... 21 1 3 1.67 5 5 0 0 0 0 0
..................................................................................................TGTCACAGTGGATGTTCTTTTT........................................................ 22 2 3 1.67 5 5 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTTTA....................................................... 23 2 3 1.67 5 5 0 0 0 0 0
................................................................................................TCTATCACAGTGGCTGTTCTTTT......................................................... 23 1 3 1.67 5 5 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTC.......................................................... 20 2 3 1.67 5 5 0 0 0 0 0
.................................................................................................ATATCACAGTGGCTGTTCTTTT......................................................... 22 0 3 1.67 5 5 0 0 0 0 0
.................................................................................................CGATCACAGTGGCTGTTCTTTT......................................................... 22 2 3 1.67 5 5 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTTTTA....................................................... 23 2 3 1.67 5 5 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCATTTT........................................................ 22 1 3 1.67 5 5 0 0 0 0 0
..................................................................................................TGTCACAGCGGCTGTTCTTTTT........................................................ 22 2 3 1.67 5 5 0 0 0 0 0
..................................................................................................TATCACAGTGGCTCTTCTTTTT........................................................ 22 1 3 1.67 5 5 0 0 0 0 0
..................................................................................................TATCACACTGGCTGTTCTTTT......................................................... 21 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTCTT......................................................... 21 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................TCTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATCACGGTGGCTGTTCTTTT......................................................... 21 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATCACAGTGGCAGTTCTTTTT........................................................ 22 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................AATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTCCTTTTT........................................................ 22 2 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTCT......................................................... 21 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTT.......................................................... 20 1 3 1.33 4 1 0 2 0 1 0
..................................................................................................TATGACAGTGGCTGTTCTTTTT........................................................ 22 1 3 1.33 4 4 0 0 0 0 0
...................................................................................................ATAACAGTGGCTGTTCTTTTT........................................................ 21 1 3 1.33 4 4 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTTTTT.................................................... 26 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGGTGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCCGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTATTT........................................................ 22 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTGTTTTTTTTT.................................................... 26 2 1 1.00 1 0 0 1 0 0 0
..........................................................AGGGAACGGGCGCTGCTGTTGTA............................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTTTC....................................................... 23 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTGTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................AGGGAACGGTCGCTGCTGATGTAA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................GATCACAGTGGCTGTTCTTTTTTTT..................................................... 25 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................GATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACCGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTGTTTTTTTT..................................................... 25 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TAGCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTTC...................................................... 24 1 2 1.00 2 2 0 0 0 0 0
..................................................................................................TGTCACAGTGGCTGTTCTTTTA........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTGCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCATTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTTTTT...................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..........................................................TGGGAACGGTCGCTGCTGATGTA............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTTTC........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
...................................................................................................AGCACAGTGGCTGTTCTTTT......................................................... 20 1 3 1.00 3 3 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGCTGATGT................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TACCACACTGGCTGTTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTTGCTGTTCTTT.......................................................... 20 1 3 1.00 3 2 1 0 0 0 0
..................................................................................................TATCACAGTGGCTTTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGTGCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGCGGCTGTTCTTT.......................................................... 20 1 3 1.00 3 2 1 0 0 0 0
..................................................................................................TATCATAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................AGGGAACGGTCGCTGCTGAT.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................ATGGAACGGTCGCTGTTGATGTA............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTTTTTTTTGCCAC.............................................. 32 3 1 1.00 1 0 0 1 0 0 0
..........................................................AGGGAACGGTCGCTGCTGATCAA............................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGGTGTTTTTT....................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TGCCACAGTGGCTGTTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTGTTTTTTTTTT................................................... 27 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTATTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
...................................................................................................AGCACAGTGGCTGTTCTTTTTT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTTG...................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTAGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTCTTTTTTT.................................................... 26 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTATTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................AGGGAACGGTCGCTGCCGATGTA............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTCGCTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
..........................................................AGGGAATGGTCGCTGCTGATGTA............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGATGATGTA............................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................GATCTATCACAGTGGCTGTTCTTTTTT....................................................... 27 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTTTT....................................................... 23 1 1 1.00 1 0 0 0 1 0 0
..................................................................................................TATCACAGACGCTGTTCTTTTTTT...................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTC........................................................... 19 1 3 1.00 3 3 0 0 0 0 0
.....................................................................................................CACAGTGGCTGTTCTTTTTTT...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTTTTTT...................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATTTCAGTGGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGCTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................AGGGAACGGTGGCTGATGATG................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................TATCACAGTCGCTGTTCTTTTTTT...................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCAGAGTGGCTGTTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTTTTTTTT................................................... 27 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TAACACAGTGGCTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
................................................................................................CGTATCACAGTGGCTGTTCTTTTTTT...................................................... 26 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTGTTTTTTTTT.................................................... 26 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGTACTTTTTCTT..................................................... 25 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATTACAGTGGCTGATCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCTCAGTGGCTGTTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTATTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTAGCTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGCTGAAGT................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................AGGGAACGGTCCCTGCTGCTTTA............................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TTTCACAGCGGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................ACAGTGGCTGTTCTTTTTT....................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................TACTACAGTGGCTGTTCTTTT......................................................... 21 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................CATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..........................................................AGGGTACGGTTGCTGCTGATGTA............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................AGGGAACGGTCGCTGCTCATGTA............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGGTCGTTTTT....................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGGGCTTTTTT....................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCAGTTCTTTTTTT...................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCCTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTCTTTGTTTTTT................................................... 27 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................GATCACAGTGGCTGTTCTTTTTTT...................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTATTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTCACATTGGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGGGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTGTTTTTTTT...................................................... 24 3 1 1.00 1 0 0 1 0 0 0
...................................................................................................ATCACAGTGGCTGTTCTTTTC........................................................ 21 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTCATCTTTTTTCT..................................................... 25 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTTTTCTT..................................................... 25 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGCTGTTGTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGCTCTTTTC........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATTACAGCGGCTGTTCTTTT......................................................... 21 2 3 1.00 3 3 0 0 0 0 0
.....................................................................................................CACAGTGGCTGTTCTTTTTT....................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATCTATCACAGTGGCTGTTCTTTTT........................................................ 25 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TGTCACAGCGGCTGTTCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTT.......................................................... 20 1 3 1.00 3 2 0 0 0 1 0
..................................................................................................TATCACAGTCGCTGTTCTTTTC........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTTTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTCGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTCTTTTTTTTT..................................................... 25 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGCGGCTGTTTTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGTTCTTGT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGGTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TATCACAGTGGCTGGTTTTTTTTT...................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TATCACAGTGGATGTTCTTGT......................................................... 21 2 4 0.75 3 3 0 0 0 0 0
..................................................................................................TTTTACAGTGGCTGTTCTTTT......................................................... 21 2 4 0.75 3 3 0 0 0 0 0
..................................................................................................TATTACAGTGGCTGTTCTTTC......................................................... 21 2 4 0.75 3 3 0 0 0 0 0
..................................................................................................TACCACAGTGGCTGATCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0 0 0
..................................................................................................TATCACAGGGGCTGTTCTTTTC........................................................ 22 2 3 0.67 2 2 0 0 0 0 0
..................................................................................................TACTACAGCGGCTGTTCTTTTT........................................................ 22 3 3 0.67 2 2 0 0 0 0 0
..................................................................................................TATCACAGTGCCTGTTCTTTTC........................................................ 22 2 3 0.67 2 2 0 0 0 0 0

Anti-sense strand reads

AAACACCGTGCGTAAACACAGTGCAACCACCTGTCTTTAACTTTTAACAAGTTTTTCTTCCCTTGCCAGCGACGACTACATCAATAAGCGTAGTAAATATAGTGTCACCGACAAGAAAAAACAAACGGTTAGCTAGATGCAAGGACGCTTGGACGCAAGGCCTATGTTATATCCTA

*****************************************.((((..((((.((((((((((((((((((.((((((((.............)))))))))))))))))))))))))).)))).))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V055

head

 V039

embryo
.........................................................................................................CACCAACAAGAAAAAACAA.................................................... 19 1 2 1.00 2 2 0 0
...........................................................................................................CGGACAAGAAAAAACAAA................................................... 18 1 5 0.20 1 1 0 0
..........................................................................................................ACCAACAAGAAAAAACAAA................................................... 19 1 7 0.14 1 1 0 0
........................................................................................................CCACCCACAAGAAAAAACAA.................................................... 20 2 10 0.10 1 1 0 0
..........................................................................................................................AAACGGTTAGCTAGACGCGT.................................. 20 3 14 0.07 1 0 1 0
........................................................................................................CCACCGACGAGAAAAAACA..................................................... 19 2 14 0.07 1 1 0 0
..................................................................CAGCAACGACCACATAAATAA......................................................................................... 21 3 17 0.06 1 0 0 1
........................................................................................................CCACCTGCAAGAAAAAACAAA................................................... 21 3 20 0.05 1 1 0 0
.........................................................................................................CACCGACAAGAAAAAAAAAAGC................................................. 22 3 20 0.05 1 1 0 0
........................................................................................................CCACAGACAAGAAAAAACA..................................................... 19 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13266:9732072-9732247 + dan-mir-6-3 Known_mirbase TTTGTGGC-------------------------------ACGCATTTGTGTCA---CGTTGGTG-G-ACA---GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT--------ATTCGC-ATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC----------CTGCGAAC------------------------------------CTGCGTTCCGG--------ATACAATATAGGAT
droBip1 scf7180000396427:875017-875177 + TCTGTGGC-------------------------------ACGAATTTGTGGCATCACCTTGGTG-G-AC----AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT--------ATTCGC-CTCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC--TGGATT----------CTGAA-----------------------------------------------------------AGGAT
droKik1 scf7180000302679:88649-88794 - TCAGCGCG-------------------------------GCCTCAGTGTATCA---TCTCTGTTGG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAA---ATTCAC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------
droFic1 scf7180000454039:847344-847488 - TCTGCGGC-------------------------------ACGCATTCGTGTCT---CCTCAATGTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA---ATTCTC-ACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTC---------------------------------------------------------------------------------------
droEle1 scf7180000491201:2013282-2013426 - TACAGGGA-------------------------------ACGGATTTGTGTCA---CCTCAATTTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAA---ATTCTC-ACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------
droRho1 scf7180000780066:74323-74467 + TCCAGGAA-------------------------------ACGCATTTGTGTCA---CCTCAATTTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAA---ATTCTC-ACCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------
droBia1 scf7180000302143:3059124-3059267 - TCTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAA---ACTCTC-ACAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT----------------------------------------------------------------------------------------
droTak1 scf7180000415384:84703-84881 + TCTGTGGC-------------------------------ATGCATTTGTGTCA---ACTGAATGTGAAAACTGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCA--GGACATGAA-------------------------------------------------------AT--A-GAA
droEug1 scf7180000409474:2397501-2397730 + TCTGTGGC-------------------------------ATGCATTTGTGTCA---CCTCAATGTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAA---ATTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCA--GGACATGAAATTGAAAACATTCCTGATTGCTCCACATTCCTTCAGCTTCGAAGTTTCGGCTAAGACTGATGAG
dm3 chr2R:15548204-15548348 - dme-mir-6-3 Known_mirbase TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------
droSim2 2r:16195476-16195620 - dsi-mir-6-3 Known_mirbase TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------
droSec2 scaffold_1:13062937-13063081 - dse-mir-6-3 Known_mirbase TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------
droYak3 2R:13624441-13624585 + dya-mir-6-3 Known_mirbase TTTGTGGC-------------------------------CCGCATTTTTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA---ACTCTC-TCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTC---------------------------------------------------------------------------------------
droEre2 scaffold_4845:9748458-9748602 - der-mir-6-3 Known_mirbase TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTTGGTGCG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTC---------------------------------------------------------------------------------------
dp5 3:12676760-12676920 - dps-mir-6-3 Known_mirbase TCTCCGCC----------------------------GCCGCGCATTCGC------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG---TTTTGC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGATC----------CA--GGAC------------------------------------TTCAGTTTCGAA------------ATATAAAAA
droPer2 scaffold_2:8906752-8906912 + dpe-mir-6-2 Known_mirbase TCTCCGCC----------------------------GCCGCGCATT-----CA---CC----------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG---TTTCGC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CA--GGAC------------------------------------TTCAGTTTCGAA------------ATATAAAAA
droWil2 scf2_1100000004514:1650985-1651110 - dwi-mir-6-3 Known_mirbase TCTGTTTT-------------------------------ACCGTTTTCTTTCA---TTTT------------------------TTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC-------------------------------------------------------------------------------------------
droVir3 scaffold_12875:4112901-4113048 + dvi-mir-6-3 Known_mirbase TTTATTAT----------------TAACTAACTT-----GTGCAATTTGTTCA---CTTTAAT--G-------ACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GAC---CTTTGT-ACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC-------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:20935942-20936111 - dmo-mir-6-3 Known_mirbase TGTGAAATAAATCTTGAATAGTGTTATCTTAAGTAT---GT-GATTTGTTCAG---TTTCAAATCG--------TGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AAT---TCATTT-AATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTT----------------------------------------------------------------------------------------
droGri2 scaffold_15112:2107904-2108046 - dgr-mir-6-3 Known_mirbase TTTATTTT----------------------ACGTGT---GTTTTTTTTTGTTA---ACTCC--------------ACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATG---ATTCAA-ATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAAC-TTT---------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTGTGGC-------------------------------ACGCATTTGTGTCA---CGTTGGTG-G-ACA---GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT--------ATTCGC-ATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC----------CTGCGAAC------------------------------------CTGCGTTCCGG--------ATACAATATAGGATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22315043.3345130367447520074
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2133049.3391489790392028
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2312039.002039920300000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................223462.001386013860000
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................203276.00828267920082
.................................................................................................AGGGAACGGTCGCTGCTGATGTA..............................................................................................................................................................23165.006514320001
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................21357.6717301720001
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................20337.0011101110000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21335.6710740670000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................23334.6710401040000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................23333.671013980000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................24132.00320320000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................19317.33528390023
.................................................................................................AGGGAACGGTCGCTGCTGATGT...............................................................................................................................................................22110.0010091000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................2219.009450000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................1938.67260260000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................2038.00245190000
.................................................................................................AGGGAACGGTCGCTGCTGATGC...............................................................................................................................................................2217.007070000
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................1836.00180180000
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................1836.00180180000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................2036.00187110000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................2235.33160150001
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................2134.33130130000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................2233.3310190000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................2433.009170010
...................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................................1932.006330000
....................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................................1931.675050000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................2231.675050000
.................................................................................................AGGGAACGGTCGCTGCTGATGTAA.............................................................................................................................................................2411.001010000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................2421.002020000
.................................................................................................AGGGAACGGTCGCTGCTGAT.................................................................................................................................................................2011.001010000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG............................................................................................................2411.001010000
..................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................................1931.003030000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTTT............................................................................................................2111.001010000
......................................................................................................................................................ACAGTGGCTGTTCTTTTTT.............................................................................................................1911.001010000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................................2131.003030000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTT.............................................................................................................2011.001010000
droBip1
TCTGTGGC-------------------------------ACGAATTTGTGGCATCACCTTGGTG-G-AC----AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT--------ATTCGC-CTCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC--TGGATT----------CTGAA-----------------------------------------------------------AGGATSizeHit CountTotal NormTotal
No Reads
droKik1
TCAGCGCG-------------------------------GCCTCAGTGTATCA---TCTCTGTTGG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAA---ATTCAC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCTGCGGC-------------------------------ACGCATTCGTGTCT---CCTCAATGTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA---ATTCTC-ACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TACAGGGA-------------------------------ACGGATTTGTGTCA---CCTCAATTTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAA---ATTCTC-ACCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCCAGGAA-------------------------------ACGCATTTGTGTCA---CCTCAATTTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAA---ATTCTC-ACCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAA---ACTCTC-ACAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCTGTGGC-------------------------------ATGCATTTGTGTCA---ACTGAATGTGAAAACTGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCA--GGACATGAA-------------------------------------------------------AT--A-GAASizeHit CountTotal NormTotal
No Reads
droEug1
TCTGTGGC-------------------------------ATGCATTTGTGTCA---CCTCAATGTG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAA---ATTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCA--GGACATGAAATTGAAAACATTCCTGATTGCTCCACATTCCTTCAGCTTCGAAGTTTCGGCTAAGACTGATGAGSizeHit CountTotal NormTotal
No Reads
dm3
TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................AGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................23138897.00388970000303324285800100000000000000000000034501000000000000000000000000000000000000000000007583125013510238892101100040020582660971910041171150047519810900010002000000000000000002811721412901213020000051000000000000120100000000000000000000400000000000000000000120200000000000100000006832010000000010000340113020000000000000100001100012016730901140001001000002032821126632202101190510100
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2316947.00694700005072175351212800000000000000000000000000000000000000000000000100000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021647202570854621801290000000000000000000000000000000000000001010100000000001247961920100002000000000000000010001010100000100
.................................................................................................AGGGAACGGTTGCTGATGATGT...............................................................................................................................................................2216352.006352000000233921000000000000000000000000362000000000000000000000000000000000000000000000062261479338000010000000000140000458910040127400100000000000000000000036749517271720000200000000000000000001000000000000000000000000000000000010000000000000000000000000000014600000010000000000000000000000000000000000000000002883800800001000000000005000010000000040000000
.................................................................................................AGGGAACGGTTGCTGATGATG................................................................................................................................................................2114948.004948000000231000000000000000000000000039670000000000000000000000000000000000000000000000871012124500000000000100020000204000800800000000000000000000000031207162293000000000000000000000000000000000000000000000000000100000000000000000000000000000000000003300000000000000000000000000000000000000000001001003101000200000000000000001000000000000010000010
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
.................................................................................................AGGGAACGGTTGCTGATGAT.................................................................................................................................................................2013286.003286000000020000000000000000000000000029730000000000000000000000000000000000000000000000320041500000000000000000000060005000000000000000000000000000021186000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000201100100000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................242585.501171000001011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000076132109070500300000000000000000000000000000000000000000000000000000007627500000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
.................................................................................................AGGGAACGGTTGCTGATGA..................................................................................................................................................................191212.002120000000000000000000000000000000000102000000000000000000000000000000000000000000000010100130000000000000000000001000300200000000000000000000000001612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000049200000000000000000000000000000000000000000
................................................................................................AAGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................241193.001930000003100000000000000000000000000000000000000000000000000000000000000000000000001811260000000000000000000016000200100000000000000000000000011117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000129000000000000000000000000000000000000000000
..................................................................................................GGGAACGGTTGCTGATGATGTA..............................................................................................................................................................221167.001670000001400000000000000000000000000100000000000000000000000000000000000000000000005840029000000000000000603007220002008000000000000000000000000054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
.................................................................................................AGGGAACGGTTGCTGATGATGTAA.............................................................................................................................................................241134.0013400000023000000000000000000000000002000000000000000000000000000000000000000000000028510270000000000000000000014800020012000000000000000000000000256000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
.................................................................................................AGGGAACGGTTGCTGATGATGTC..............................................................................................................................................................231127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000003102500000000000000020000040000003000000000000000000000000047420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
.................................................................................................AGGGAACGGTTGCTGATGATGTAG.............................................................................................................................................................24196.009600000001000000000000000000000000001000000000000000000000000000000000000000000000019903300000000000000050000300000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000000000000000000000000000000000000000000
.................................................................................................AGGGAACGGTTGCTGATGATGTT..............................................................................................................................................................23186.0086000000330000000000000000000000000000000000000000000000000000000000000000000000000250150000000000000002000028000100200000000000000000000000001120020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000016000000000000000000010000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
.................................................................................................AGGGAACGGTTGCTGATGATGTG..............................................................................................................................................................23171.007100000061000000000000000000000000000000000000000000000000000000000000000000000000010301300000000000000010000250000017000000000000000000000000023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
................................................................................................AAGGGAACGGTTGCTGATGATGT...............................................................................................................................................................23164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000000000000000000000000000000000000000000601900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
.................................................................................................AGGGAACGGTTGCTGATGATGTAT.............................................................................................................................................................24151.005100000013000000000000000000000000002000000000000000000000000000000000000000000000011100300000000000000000000000001003000000000000000000000000143600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000010000000
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG............................................................................................................24144.004400000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261100000000000000000000000000000000000000000
.................................................................................................AGGGAACGGTTGCTGATG...................................................................................................................................................................18144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000010000002000000000000000000000000785000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA............................................................................................................24133.00330000001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000
................................................................................................AAGGGAACGGTTGCTGATGATG................................................................................................................................................................22130.00300000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
..................................................................................................GGGAACGGTTGCTGATGATGT...............................................................................................................................................................21127.0027000000000000000000000000000000000010000000000000000000000000000000000000000000000800030000000000000000000000000300500000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
.................................................................................................AGGGAACGGTTGCTGATGATGTAAA............................................................................................................................................................25125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000003100000100000000000000000000000002202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
.................................................................................................AGGGAACGGTTGCTGATGATGC...............................................................................................................................................................22122.0022000000100000000000000000000000000000000000000000000000000000000000000000000000000300010000000000001000000001000000000000000000000000000000000511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................24121.00210000001022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000000000000
........................................................................................................................GTTT-GAA---ACTCTC-ACAATTTA....................................................................................................................................21121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000700060000000000000000000004000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................22121.0021000000040100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000009400000000000000000000000000000000000000000
droSim2
TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................223816.00244800797972722282537553601315000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................213162.6748810811199451247312154104000
.................................................................................................AGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................231137.00137001710092131307624000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................23196.0096007680244100001000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................19361.3318400212713562641000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................20350.671520033123571614952001000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................23350.671520001009061000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................24343.331300000007852000000000
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................18339.001170000610514001000000
.................................................................................................AGGGAACGGTTGCTGATGATG................................................................................................................................................................21125.0025003000005301301000
.................................................................................................AGGGAACGGTTGCTGATGATGT...............................................................................................................................................................22122.0022001100115101200000
.........................................................................................................................................................GTGGCTGTTCTTTTT..............................................................................................................15318.67560000000027281000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21318.3355000550000000000000
..................................................................................................................................................TATCACAGTGGCTGT.....................................................................................................................15315.00450000000012302010000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................................23313.33400000002119000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................................24312.67380000002117000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................2237.3322000000128101000000
.................................................................................................AGGGAACGGTTGCTGATGAT.................................................................................................................................................................2014.00400200000100100000
.................................................................................................AGGGAACGGTTGCTGATGATGTAT.............................................................................................................................................................2413.00300000000300000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................2032.67800053000000000000
..................................................................................................................................................TATCACAGTGGCTGTT....................................................................................................................1632.67800000010052000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................2422.50500500000000000000
........................................................................................................................GTTC-GAA---ACTCTC-ACAATTTA....................................................................................................................................2112.00200100000010000000
.................................................................................................AGGGAACGGTTGCTGATGATGTAA.............................................................................................................................................................2412.00200000000000101000
....................................................A---CCTCAGTGCG-------AAAATTG......................................................................................................................................................................................................1812.00200200000000000000
................................................................................................AAGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................2412.00200000000000200000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA...........................................................................................................2521.50300000030000000000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................2031.33400030010000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................................2131.33400000022000000000
........................................................................................................................GTTC-GAA---ACTCTC-ACAATT......................................................................................................................................1911.00100100000000000000
........................................................................................................................................................................TGTTTGGCAATCGATCTACG..........................................................................................2011.00100000000010000000
.................................................................................................AGGGAACGGTTGCTGATGATGTT..............................................................................................................................................................2311.00100000000000100000
.................................................................................................AGGGAACGGTTGCTGATGATGTAGT............................................................................................................................................................2511.00100000000000100000
................................................................................................AAGGGAACGGTTGCTGATGATG................................................................................................................................................................2211.00100000000010000000
........................................................................................................................GTTC-GAA---ACTCTC-ACAATTT.....................................................................................................................................2011.00100100000000000000
.................................................................................................AGGGAACGGTTGCTGATGG..................................................................................................................................................................1911.00100100000000000000
................................................................................................AAGGGAACGGTTGCTGATGAT.................................................................................................................................................................2111.00100000000010000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA............................................................................................................2411.00100000001000000000
..............................................................................................AGAAGGGAACGGTTGCTGATGA..................................................................................................................................................................2211.00100000000000100000
.....................................................................................................AACGGTTGCTGATGATGTA..............................................................................................................................................................1911.00100000000000100000
..............................................................................................AGAAGGGAACGGTTGCTGATG...................................................................................................................................................................2111.00100000000000100000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.............................................................................................................2230.67200000002000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................2130.67200020000000000000
droSec2
TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22327140.338142117131478922772
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2138065.33241962271023821138
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................2031417.004251233419035
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................231502.00502614941
.................................................................................................AGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................231262.002621422424
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................193259.677793075719
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................233126.33379203689
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................183112.00336003342
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21392.0027614701281
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................18367.33202101965
.................................................................................................AGGGAACGGTTGCTGATGATGT...............................................................................................................................................................22135.003500350
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................22332.339720941
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................22329.008710851
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................20319.6759100481
.................................................................................................AGGGAACGGTTGCTGATGATG................................................................................................................................................................21115.001500150
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................24314.004200411
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................20311.3334230110
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................23311.003310320
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................2237.332220200
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................2427.001400140
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................1936.331920170
....................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................................1935.331620140
..................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................................2134.331300130
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG............................................................................................................2414.0040040
................................................................................................AAGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................2414.0040040
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................2214.0041030
.................................................................................................AGGGAACGGTTGCTGATGAT.................................................................................................................................................................2014.0040130
.................................................................................................AGGGAACGGTTGCTGATGATGTAA.............................................................................................................................................................2414.0040040
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................2133.671100110
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................................2333.331000100
.................................................................................................AGGGAACGGTTGCTGATGATGTAG.............................................................................................................................................................2413.0030030
...................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................................1932.3375020
.....................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................................1832.3371060
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA............................................................................................................2412.0020020
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................2132.0062040
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................2411.0010010
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT...........................................................................................................2511.0010010
................................................................................................AAGGGAACGGTTGCTGATGATG................................................................................................................................................................2211.0010010
...............................................................................................................................................TTATATCACAGTGGCTGTTCT..................................................................................................................2111.0010010
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG............................................................................................................2211.0010010
..................................................................................................................................................TATCACAGTGGCTGTTCTTA................................................................................................................2031.0030030
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................2031.0030021
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................2231.0030030
.................................................................................................AGGGAACGGTTGCTGATGATGTAT.............................................................................................................................................................2411.0010010
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.............................................................................................................2231.0030030
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................................2430.6720020
droYak3
TTTGTGGC-------------------------------CCGCATTTTTGTCA---CCTCAGTGCG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA---ACTCTC-TCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22388528.672655860234265335500120000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................21315870.00476100634753810080000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................23110507.0010507021050500000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................2232566.67770000770000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................2031006.673020015300310010000
.................................................................................................AGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................231878.00878007761020000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................213276.008280082800000000
.................................................................................................AGGGAACGGTTGCTGATGATGT...............................................................................................................................................................221177.0017701159170000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................233165.004950149400000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................203138.334150041500000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................242104.502090020900000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21392.002760926700000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................23390.332710226900000000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................19362.001860218400000000
.................................................................................................AGGGAACGGTTGCTGATGATG................................................................................................................................................................21149.0049104080000000
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................18347.001410114000000000
.................................................................................................AGGGAACGGTTGCTGATGATGC...............................................................................................................................................................22133.0033003300000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................22331.3394009400000000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................20322.3367006700000000
..............................................................................................AGAAGGGAACGGTTGCTGATGAT.................................................................................................................................................................23122.0022001920100000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................19321.0063016200000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................21316.6750005000000000
................................................................................................AAGGGAACGGTTGCTGATGATGT...............................................................................................................................................................23115.0015001320000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................24113.0013001300000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................20312.6738023600000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................22112.0012011100000000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTT.............................................................................................................2019.00900900000000
..............................................................................................AGAAGGGAACGGTTGCTGATGA..................................................................................................................................................................2219.00900720000000
..............................................................................................AGAAGGGAACGGTTGCTGATG...................................................................................................................................................................2119.00900720000000
.................................................................................................AGGGAACGGTTGCTGATGA..................................................................................................................................................................1918.00800710000000
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................1837.3322012100000000
......................................................................................................................................................ACAGTGGCTGTTCTTTTTT.............................................................................................................1917.00700700000000
................................................................................................AAGGGAACGGTTGCTGATGATGTA..............................................................................................................................................................2416.00600420000000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................2235.6717001700000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................2235.6717001700000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................................2134.6714001400000000
.................................................................................................AGGGAACGGTTGCTGATGAT.................................................................................................................................................................2014.00400400000000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTT.............................................................................................................2114.00400400000000
.................................................................................................AGGGAACGGTTGCTGATGATGTT..............................................................................................................................................................2314.00400400000000
..............................................................................................AGAAGGGAACGGTTGCTGATGAC.................................................................................................................................................................2313.00300300000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTTT............................................................................................................2323.00600600000000
droEre2
TTTGTGGC-------------------------------ACGCATTTGTGTCA---CCTTGGTGCG-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAA---ACTCTC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22310965.6732897490027970056160
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2132527.677583713686301510
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2311065.00106535103000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................223198.00594958500000
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................203195.675877550501240
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................213131.673953702500000
.................................................................................................AGGGAACGGTGGCTGATGATGTA..............................................................................................................................................................23144.004488028000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................21326.007817700000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................23319.005715600000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................23318.6756163800020
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................20317.3352411100000
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................20316.334904801000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................19314.3343103001110
.................................................................................................AGGGAACGGTGGCTGATGATGT...............................................................................................................................................................22111.00113503000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................20310.673223900000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................2429.001801701000
.................................................................................................AGGGAACGGTGGCTGATGATG................................................................................................................................................................2116.0061203000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................2235.331661000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................2215.0054100000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG............................................................................................................2414.0042200000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................2132.3374300000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................1932.0061500000
...................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................................1932.0066000000
.................................................................................................AGGGAACGGTGGCTGATGATGC...............................................................................................................................................................2212.0020200000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................................2431.6750500000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................................2331.3342200000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................2231.3341300000
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................1831.3340400000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..............................................................................................................2231.0030300000
..................................................................................................GGGAACGGTGGCTGATGATGTA..............................................................................................................................................................2211.0011000000
........................................................................................................................GTTC-GAA---ACTCTC-ACAATTTA....................................................................................................................................2111.0011000000
............................................................................................................................................AATTTATATCACAGTGGCTGTTCTTTTT..............................................................................................................2811.0010100000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................................2131.0030300000
.................................................................................................AGGGAACGGTGGCTGATGATGTAT.............................................................................................................................................................2411.0010100000
....................................................................................................GAACGGTGGCTGATGATG................................................................................................................................................................1811.0010001000
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................1831.0032100000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...........................................................................................................2211.0010100000
.................................................................................................AGGGAACGGTGGCTGATGA..................................................................................................................................................................1911.0010001000
.................................................................................................AGGGAACGGTGGCTGATGATGTAG.............................................................................................................................................................2411.0010001000
..................................................................................................GGGAACGGTGGCTGATGATGT...............................................................................................................................................................2111.0011000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................2411.0010100000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...........................................................................................................2311.0010100000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................................2330.6720200000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................2430.6722000000
....................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................................1930.6720200000
dp5
TCTCCGCC----------------------------GCCGCGCATTCGC------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG---TTTTGC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGATC----------CA--GGAC------------------------------------TTCAGTTTCGAA------------ATATAAAAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22338201.331146040681510770178307000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2136091.0018273012371700029205000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2314325.00432505542662002000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................2231760.0052800452724000000
.................................................................................................AGGGAACGGTTGCTGCTGATGTA..............................................................................................................................................................231431.00431015280013500001
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................203403.001209013410741000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................213194.005820505770000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................213169.33508025060000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................233159.004770124641000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................233100.003000222770001000
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................20362.00186001842000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................24257.50115021121000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................20340.001200106140000000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................22330.339107840000000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................19327.6783024590000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................22324.677406680000000
.................................................................................................AGGGAACGGTTGCTGCTGATGT...............................................................................................................................................................22119.001901120600000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................20317.0051032190000000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................................23313.674108330000000
.................................................................................................AGGGAACGGTTGCTGCTGATG................................................................................................................................................................21112.00120060600000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................22112.00120570000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................................24310.673206260000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................22310.333109220000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................................1938.332502230000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................2138.002401230000000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................1937.6723010130000000
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................1837.002108130000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................2417.0070070000000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...........................................................................................................2216.0060060000000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................................2135.331600160000000
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................1835.001503120000000
.................................................................................................AGGGAACGGTTGCTGCTGATGTAA.............................................................................................................................................................2414.0040010300000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................2434.001202100000000
.................................................................................................AGGGAACGGTTGCTGCTGATGTT..............................................................................................................................................................2314.0040020200000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................................2333.0090180000000
.................................................................................................AGGGAACGGTTGCTGCTGATGTC..............................................................................................................................................................2313.0030020100000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA..........................................................................................................2612.0020020000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................................2332.0060230001000
.................................................................................................AGGGAACGGTTGCTGCTGATGC...............................................................................................................................................................2212.0020020000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................................2132.0060150000000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTTTT.............................................................................................................2412.0020020000000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...........................................................................................................2312.0020020000000
...................................................................................................................................................ATCACAGTGGCTGTTCTT.................................................................................................................1831.6750500000000
..................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................................1931.6750050000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC...........................................................................................................2521.5030030000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..............................................................................................................2231.3340040000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.............................................................................................................2231.3340310000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...........................................................................................................2531.3340040000000
droPer2
TCTCCGCC----------------------------GCCGCGCATT-----CA---CC----------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG---TTTCGC-ACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CA--GGAC------------------------------------TTCAGTTTCGAA------------ATATAAAAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................223146.00438941300115
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................21325.00758620005
.................................................................................................AGGGAACGGTTGCTGCTGATGTA..............................................................................................................................................................23115.00154011000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21314.67440440000
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................2035.0015680001
.................................................................................................AGGGAACGGTTGCTGCTGATG................................................................................................................................................................2114.004102010
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2314.004220000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................2033.009090000
.................................................................................................AGGGAACGGTTGCTGCTGATGTAA.............................................................................................................................................................2412.002002000
.................................................................................................AGGGAACGGTTGCTGCTGATGT...............................................................................................................................................................2211.001001000
.................................................................................................AGGGAACGGTTGCTGCTGATGTAGT............................................................................................................................................................2511.001001000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................1931.003030000
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................2030.672020000
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................2030.331100000
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................1930.331010000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................2230.331010000
....................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................................1930.331010000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................2230.331010000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................2330.331010000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................2230.331010000
droWil2
TCTGTTTT-------------------------------ACCGTTTTCTTTCA---TTTT------------------------TTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22335155.671054670180701036555
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2138217.002465103441243042
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2311572.001572026015451
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................2031168.673506059534411
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................2331099.333298010032880
.................................................................................................AGGGAACGGTTGCTGTTGATGTA..............................................................................................................................................................231841.008410008410
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................193320.009600609504
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................243217.006510506460
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................223189.675690405650
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................183128.333850303820
.................................................................................................AGGGAACGGTTGCTGTTGATGT...............................................................................................................................................................22185.0085000850
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21370.3321101430680
.................................................................................................AGGGAACGGTTGCTGTTGATG................................................................................................................................................................21154.0054000540
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA...........................................................................................................25346.001380001380
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................18345.001350101340
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................................23341.671250001250
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................22340.331210101200
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................23332.3397000970
.................................................................................................AGGGAACGGTTGCTGTTGATGTAA.............................................................................................................................................................24131.0031000310
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA............................................................................................................24130.0030000300
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................22318.6756000560
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................20316.00480310170
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................24210.5021010200
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................20310.33310120190
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...........................................................................................................22110.0010000100
..................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................................2139.3328010270
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................................2238.6726000260
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA...........................................................................................................2518.00800080
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................................2437.3322000220
.................................................................................................AGGGAACGGTTGCTGTTGA..................................................................................................................................................................1917.00700070
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................2217.00703040
.................................................................................................AGGGAACGGTTGCTGTTGATGTAAA............................................................................................................................................................2516.00600060
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................1936.0018000180
..............................................................................................AGAAGGGAACGGTTGCTGTTGA..................................................................................................................................................................2215.00500050
.................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................................2134.6714000140
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................2134.3313000130
................................................................................................AAGGGAACGGTTGCTGTTGATG................................................................................................................................................................2214.00400040
.................................................................................................AGGGAACGGTTGCTGTTGAT.................................................................................................................................................................2014.00400040
......................................................................................................................................................ACAGTGGCTGTTCTTTTTT.............................................................................................................1914.00400040
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................................2433.6711000110
..................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..............................................................................................................2243.2513000130
................................................................................................AAGGGAACGGTTGCTGTTGATGTA..............................................................................................................................................................2413.00300030
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTT.............................................................................................................2113.00301020
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG............................................................................................................2413.00301020
...................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................................1932.67807010
......................................................................................................................................................ACAGTGGCTGTTCTTTTTA.............................................................................................................1932.67800080
..............................................................................................AGAAGGGAACGGTTGCTGTTGAT.................................................................................................................................................................2312.00200020
....................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................................1932.00600060
...................................................CA---TTTT------------------------TTGTTTAAAAAGA.....................................................................................................................................................................................1912.00200020
........................................................................................................................GTAT-ACCATTTTGTTTAACAA--TA....................................................................................................................................2312.00200020
..................................................................................................GGGAACGGTTGCTGTTGATGTA..............................................................................................................................................................2212.00200020
.................................................................................................AGGGAACGGTTGCTGTTGATGTG..............................................................................................................................................................2312.00200020
.....................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................................1831.67500050
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................................2331.33402020
.................................................................................................................................................ATATCACAGTGGCTGTTCTT.................................................................................................................2031.33400040
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA............................................................................................................2231.33400040
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC...........................................................................................................2511.00100010
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT...........................................................................................................2511.00100010
.................................................................................................AGGGAACGGTTGCTGTTGATGTAT.............................................................................................................................................................2411.00100010
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTTG............................................................................................................2111.00100010
.................................................................................................AGGGAACGGTTGCTGTTGATGTAG.............................................................................................................................................................2411.00100010
.........................................................................................................................................AACAA--TATATCACAGTGGCTGTTCTTTT...............................................................................................................2811.00100010
..................................................TCA---TTTT------------------------TTGTTTAAAAAGA.....................................................................................................................................................................................2011.00100010
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTTAA...........................................................................................................2211.00100010
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................2411.00100010
.................................................................................................AGGGAACGGTTGCTGTTGATGTT..............................................................................................................................................................2311.00100010
.................................................................................................AGGGAACGGTTGCTGTTGATGTGT.............................................................................................................................................................2411.00100010
.................................................................................................AGGGAACGGTTGCTGTTGATGC...............................................................................................................................................................2211.00100010
......................................................................................................ACGGTTGCTGTTGATGTA..............................................................................................................................................................1811.00100010
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC...........................................................................................................2531.00300030
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................2131.00300030
droVir3
TTTATTAT----------------TAACTAACTT-----GTGCAATTTGTTCA---CTTTAAT--G-------ACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GAC---CTTTGT-ACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
.................................................................................................AGAGAACGTTCGCTGTTGATGTA..............................................................................................................................................................23114177.0014177001161000000001212500000000000000010085130602073140069101934372554485419368238212483151470000027027024290220301677245259282338
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................2314063.00406300014990000000000000000000000000000000000000268161105918516791160102701046300025020000042413180000202151591868180
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
.................................................................................................AGAGAACGTTCGCTGTTGATG................................................................................................................................................................2111078.0010780002800000000020000000000000000002010610000794555949451014779523433280001433601000611551000002722221615
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
.................................................................................................AGAGAACGTTCGCTGTTGATGT...............................................................................................................................................................221402.004020002400000000212000000000000000000205318180000113219311111212010007400000098570000005119141117
.................................................................................................AGAGAACGTTCGCTGTTGATGTAA.............................................................................................................................................................241238.0023800050000000001000000000000000000002034000081612333132502000000000007552000000494181416
................................................................................................AAGAGAACGTTCGCTGTTGATGTA..............................................................................................................................................................241197.00197000200000000010000000000000000001001420000174943310211000100021000003528000000201260
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................241130.0013000041000000000000000000000000000000000000000213425611104620002400000012200000001120
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...........................................................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................24268.50137000370000000000000000000000000000000000000004432574946410003000000221600000065625
.................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-...........................................................................................................................................................25166.006600010000000000000000000000000000000001000011253202111000000010000012900000062528
.................................................................................................AGAGAACGTTCGCTGTTGAT.................................................................................................................................................................20164.006400000000000000000000000000000000000011000000300051523410001310000020700000024252
.................................................................................................AGAGAACGTTCGCTGTTGATGTC..............................................................................................................................................................23158.0058000000000000000000000000000000000000010000318272100110100000120000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
........................................................................................................................GT-C-GAC---CTTTGT-ACTCTTTA....................................................................................................................................20145.004500040000000010000000000000000000601431600001110000000000000010000000500000000001
................................................................................................AAGAGAACGTTCGCTGTTGATG................................................................................................................................................................22142.00420002000000000000000000000000000000100000000750154131320000300000002100000001000
.................................................................................................AGAGAACGTTCGCTGTTGA..................................................................................................................................................................19240.5081000000000000010000000000000000000000000000221195342060111000400000001500000041000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC...........................................................................................................25132.00320008000000000000000000000000000000000000000001410210212000900000000100000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
................................................................................................AAGAGAACGTTCGCTGTTGATGT...............................................................................................................................................................23127.00270002000000000000000000000000000000001200000320001010100000220000011500000000111
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
.................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-.........................................................................................................................................................26114.00140000000000000000000000000000000000000000001210000000001000000000001100000023110
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
.................................................................................................AGAGAACGTTCGCTGTTGATGC...............................................................................................................................................................22111.00110007000000001000000000000000000000000000000000000000000000010000010100000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA............................................................................................................2419.0090000000000000000000000000000000000000000000001000121100000000000011100000000000
.................................................................................................AGAGAACGTTCGCTGTTGATGTAG.............................................................................................................................................................2419.0090000000000000100000000000000000000000000000100020100000000000000000210000000010
................................................................................................AAGAGAACGTTCGCTGTTGAT.................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000110100002000200000000000000000101
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA............................................................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
.................................................................................................AGAGAACGTTCGCTGTTGATGTT..............................................................................................................................................................2318.0080000000000000000000000000000000000000000000110000020000000030000000100000000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................2218.0080003000000000000000000000000000000000000000010001000000000100000010100000000000
.................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
.................................................................................................AGAGAACGTTCGCTGTTGATGTG..............................................................................................................................................................2317.0070000000000000000000000000000000000000000001320000000000000010000000000000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC............................................................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG............................................................................................................2416.0060001000000000000000000000000000000000000000000002020000000000000000000000001000
..................................................................................................................................................TATCACAGTGGCTGTTC...................................................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
................................................................................................................................................TATATCACAGTGGCTGTTCTTT................................................................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
.................................................................................................AGAGAACGTTCGCTGTTGATGTAT.............................................................................................................................................................2415.0050000000000000000000000000000000010000000000200000000000000100000000000000010000
................................................................................................AAGAGAACGTTCGCTGTTGATGTAA.............................................................................................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000200000001001
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC..........................................................................................................2624.5090002000000000000000000000000000000000000000100000002000000400000000000000000000
.................................................................................................AGAGAACGTTCGCTGTTGATC................................................................................................................................................................2124.5090001000000000000000000000000000000000000000110010100100000210000000000000000000
...............................................................................................GAAGAGAACGTTCGCTGTTGATG................................................................................................................................................................2314.0040000000000000000000000000000000000000000000100000100010000000000000000000000010
....................................................................................................GAACGTTCGCTGTTGATGTA..............................................................................................................................................................2014.0040000000000000000000000000000000000001000000200000000000000000000000000000010000
......................................................................................................ACGTTCGCTGTTGATGTA..............................................................................................................................................................1814.0040000000000000000000000000000000000000000000210000000000000000000000100000000000
.................................................................................................AGAGAACGTTCGCTGTTGATGA...............................................................................................................................................................2214.0040000000000000000000000000000000000000000000120000000000000010000000000000000000
...................................................................................................AGAACGTTCGCTGTTGATGTA..............................................................................................................................................................2114.0040001000000000100000000000000000000001000000000000000000000000000000100000000000
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC............................................................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
............................................................................CTCGTCAATTGTTTAAAAGGA.....................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000100000000000000000000000100000001000
droMoj3
TGTGAAATAAATCTTGAATAGTGTTATCTTAAGTAT---GT-GATTTGTTCAG---TTTCAAATCG--------TGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AAT---TCATTT-AATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTT----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................223175659.67526979301005269462
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................21371420.67214262141002142425
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.............................................................................................................23120128.00201280000201271
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................................2339565.33286966000286900
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................2035461.67163853000163802
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................................2234979.00149371000149360
..................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................................2131153.673461000034610
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................................243749.332248000022480
..................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................................203612.001836000018360
.................................................................................................AGAGAACGTTCGCTGTTGATGT...............................................................................................................................................................221586.005860204003820
.................................................................................................AGAGAACGTTCGCTGTTGATGTA..............................................................................................................................................................231565.005651146004180
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.............................................................................................................221463.0046300004630
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC............................................................................................................241402.0040200004020
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................................213393.671181200011790
..................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................................193276.6783001008281
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................................233230.3369100006910
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT............................................................................................................242181.5036320003610
.................................................................................................AGAGAACGTTCGCTGTTGATG................................................................................................................................................................211171.00171064001070
...................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................................203132.3339710003960
.................................................................................................AGAGAACGTTCGCTGTTGATGC...............................................................................................................................................................221129.0012900001290
................................................................................................AAGAGAACGTTCGCTGTTGATGT...............................................................................................................................................................231116.0011604500710
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................................22389.6726900002690
....................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................................20389.6726900002690
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC...........................................................................................................25170.00700000700
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................................23368.6720600002060
.....................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................................19365.3319600001960
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...........................................................................................................25353.6716100001610
......................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................................18347.6714300001430
................................................................................................AAGAGAACGTTCGCTGTTGATG................................................................................................................................................................22147.004701900280
..................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................................21346.6714000001400
....................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................................19331.33940000940
.................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................................21331.33940000940
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................................22328.67860000860
.....................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................................18328.33850000850
..................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................................18326.33790000790
.................................................................................................AGAGAACGTTCGCTGTTGATGTAA.............................................................................................................................................................24124.00240600180
................................................................................................AAGAGAACGTTCGCTGTTGATGC...............................................................................................................................................................23122.00220000220
...................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.............................................................................................................22316.00480000480
.................................................................................................AGAGAACGTTCGCTGTTGATGTT..............................................................................................................................................................23115.0015080070
..................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................................19314.67440000440
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG............................................................................................................22113.00130000130
.....................................................................................................................................................CACAGTGGCTGTTCTTTTTT.............................................................................................................20112.00120000120
....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...........................................................................................................23111.00110000110
...................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................................19311.00330000330
droGri2
TTTATTTT----------------------ACGTGT---GTTTTTTTTTGTTA---ACTCC--------------ACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATG---ATTCAA-ATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAAC-TTT---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................................2262.5015105
..................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................................2161.831129
..................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................................2060.33202

Generated: 10/20/2015 at 07:43 PM