dan-mir-5

CAAATGTGACTATTCGAAAAAAAATGTAAAATATTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTTATCCCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGCAGTTGTCCAAAATGCATCAAAAATAACGAGTTAGGTGACAGGA ***********************************......(((.((.(((((((((.(((((((((((((((((.........))...)))))))))))))))))))))).)).)).))).......***********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	M044 female body	V106 head	V105 male body	V055 head
....................................................AAAGGAACGATCGTTGTGATATG............................................................................................	23	0	1	3433.00	3433	2558	681	140	13	20	21
.............................................................................................TATCACAGTGATTTTCCTTTAT....................................................	22	0	1	1891.00	1891	1648	199	33	8	2	1
....................................................AAAGGAACGATCGTTGTGATAT.............................................................................................	22	0	1	1454.00	1454	1141	252	31	13	10	7
.............................................................................................TATCACAGTGATTTTCCTTTATA...................................................	23	0	1	721.00	721	593	87	40	1	0	0
....................................................AAAGGAACGATCGTTGTGATA..............................................................................................	21	0	1	243.00	243	217	20	2	1	3	0
....................................................AAAGGAACGATCGTTGTGAT...............................................................................................	20	0	1	154.00	154	105	26	2	6	11	4
..............................................................................................ATCACAGTGATTTTCCTTTAT....................................................	21	0	1	147.00	147	128	13	5	1	0	0
....................................................AAAGGAACGATCGTTGTGATAC.............................................................................................	22	1	1	117.00	117	117	0	0	0	0	0
....................................................AGAGGAACGATCGTTGTGATATG............................................................................................	23	1	1	116.00	116	115	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTAC....................................................	22	1	1	110.00	110	110	0	0	0	0	0
.............................................................................................TATTACAGTGATTTTCCTTTAT....................................................	22	1	1	95.00	95	94	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTA.....................................................	21	0	1	64.00	64	61	3	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATT............................................................................................	23	1	1	64.00	64	21	39	1	3	0	0
....................................................AAAGGAACGATCGTTGTGATATGT...........................................................................................	24	1	1	64.00	64	55	6	2	0	0	1
..............................................................................................ATCACAGTGATTTTCCTTTATA...................................................	22	0	1	54.00	54	43	5	6	0	0	0
.............................................................................................TGTCACAGTGATTTTCCTTTAT....................................................	22	1	1	52.00	52	52	0	0	0	0	0
....................................................AGAGGAACGATCGTTGTGATAT.............................................................................................	22	1	1	47.00	47	47	0	0	0	0	0
.............................................................................................TACCACAGTGATTTTCCTTTAT....................................................	22	1	1	43.00	43	40	3	0	0	0	0
....................................................AAATGAACGATCGTTGTGATATG............................................................................................	23	1	1	32.00	32	31	1	0	0	0	0
....................................................ATAGGAACGATCGTTGTGATATG............................................................................................	23	1	1	26.00	26	26	0	0	0	0	0
..............................................................................................AGCACAGTGATTTTCCTTTAT....................................................	21	1	1	23.00	23	23	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTT......................................................	20	0	1	23.00	23	9	9	2	3	0	0
.............................................................................................TATCACAGTGATTTTCCTTTATAA..................................................	24	0	1	23.00	23	19	4	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATGC...........................................................................................	24	0	1	19.00	19	19	0	0	0	0	0
.............................................................................................TTTCACAGTGATTTTCCTTTAT....................................................	22	1	1	18.00	18	18	0	0	0	0	0
............................................................................................CTATCACAGTGATTTTCCTTTAT....................................................	23	1	1	18.00	18	18	0	0	0	0	0
.............................................................................................TATCACAGTGCTTTTCCTTTAT....................................................	22	1	1	18.00	18	17	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATGA...........................................................................................	24	1	1	17.00	17	13	3	0	0	1	0
.............................................................................................TATTACAGTGATTTTCCTTTATA...................................................	23	1	1	17.00	17	17	0	0	0	0	0
....................................................AAATGAACGATCGTTGTGATAT.............................................................................................	22	1	1	16.00	16	14	2	0	0	0	0
....................................................AAAGGAACGATCGTTGTGAC...............................................................................................	20	1	1	16.00	16	16	0	0	0	0	0
.............................................................................................TGTCACAGTGATTTTCCTTTATA...................................................	23	1	1	14.00	14	14	0	0	0	0	0
....................................................AAAGGAAAGATCGTTGTGATATG............................................................................................	23	1	1	14.00	14	13	1	0	0	0	0
....................................................TAAGGAACGATCGTTGTGATATG............................................................................................	23	1	1	14.00	14	14	0	0	0	0	0
.............................................................................................TACCACAGTGATTTTCCTTTATA...................................................	23	1	1	14.00	14	14	0	0	0	0	0
.....................................................AAGGAACGATCGTTGTGATATG............................................................................................	22	0	1	13.00	13	3	0	10	0	0	0
....................................................AAAGGAACGATCGTTGTTATATG............................................................................................	23	1	1	12.00	12	2	10	0	0	0	0
....................................................AAAGGAACGATCGTTGGGATATG............................................................................................	23	1	1	11.00	11	6	5	0	0	0	0
....................................................ATAGGAACGATCGTTGTGATAT.............................................................................................	22	1	1	11.00	11	10	1	0	0	0	0
..............................................................................................ATCACAGTGATTTTCCTTTAC....................................................	21	1	1	10.00	10	10	0	0	0	0	0
....................................................AAAGTAACGATCGTTGTGATATG............................................................................................	23	1	1	10.00	10	8	1	1	0	0	0
....................................................AAAGGAACGATCGCTGTGATATG............................................................................................	23	1	1	9.00	9	3	5	0	0	0	1
..............................................................................................AGCACAGTGATTTTCCTTTATA...................................................	22	1	1	9.00	9	9	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGA................................................................................................	19	0	1	9.00	9	7	2	0	0	0	0
....................................................AAAGGAACGATAGTTGTGATAT.............................................................................................	22	1	1	8.00	8	8	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATC............................................................................................	23	1	1	8.00	8	7	1	0	0	0	0
....................................................AACGGAACGATCGTTGTGATATG............................................................................................	23	1	1	8.00	8	6	2	0	0	0	0
....................................................AAAGGGACGATCGTTGTGATATG............................................................................................	23	1	1	8.00	8	6	2	0	0	0	0
.............................................................................................TTTCACAGTGATTTTCCTTTATA...................................................	23	1	1	8.00	8	8	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATGTT..........................................................................................	25	2	1	7.00	7	4	3	0	0	0	0
......................................................AGGAACGATCGTTGTGATATG............................................................................................	21	0	1	7.00	7	6	0	1	0	0	0
.............................................................................................CATCACAGTGATTTTCCTTTAT....................................................	22	1	1	7.00	7	7	0	0	0	0	0
.....................................................AAGGAACGATCGTTGTGATAT.............................................................................................	21	0	1	7.00	7	3	0	4	0	0	0
....................................................TAAGGAACGATCGTTGTGATAT.............................................................................................	22	1	1	6.00	6	6	0	0	0	0	0
.................................TTCTAAGGACCATTCGCTA...................................................................................................................	19	0	1	6.00	6	5	1	0	0	0	0
....................................................AAAGGAACGATCGTTTTGATATG............................................................................................	23	1	1	6.00	6	3	3	0	0	0	0
.............................................................................................TATTACAGTGATTTTCCTTTAC....................................................	22	2	1	6.00	6	6	0	0	0	0	0
..............................................................................................ATAACAGTGATTTTCCTTTAT....................................................	21	1	1	6.00	6	6	0	0	0	0	0
....................................................AAAGGAACTATCGTTGTGATATG............................................................................................	23	1	1	6.00	6	3	2	1	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTATT...................................................	23	1	1	6.00	6	6	0	0	0	0	0
....................................................AAAGGAACGATAGTTGTGATATG............................................................................................	23	1	1	6.00	6	5	1	0	0	0	0
...............................................................................................TCACAGTGATTTTCCTTTAT....................................................	20	0	1	6.00	6	6	0	0	0	0	0
....................................................AGAGGAACGATCGTTGTGATA..............................................................................................	21	1	1	6.00	6	6	0	0	0	0	0
....................................................AAAGGAACGATCGGTGTGATATG............................................................................................	23	1	1	6.00	6	3	3	0	0	0	0
....................................................AAAAGAACGATCGTTGTGATATG............................................................................................	23	1	1	6.00	6	3	3	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATA............................................................................................	23	1	1	5.00	5	4	1	0	0	0	0
....................................................AAAGGAACAATCGTTGTGATATG............................................................................................	23	1	1	5.00	5	2	3	0	0	0	0
.............................................................................................TATCACAGCGATTTTCCTTTAT....................................................	22	1	1	5.00	5	3	2	0	0	0	0
....................................................AAAGGAGCGATCGTTGTGATATG............................................................................................	23	1	1	5.00	5	4	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGTTATG............................................................................................	23	1	1	5.00	5	5	0	0	0	0	0
.............................................................................................TATCACAGCGATTTTCCTTTATA...................................................	23	1	1	5.00	5	5	0	0	0	0	0
.............................................................................................TATCTCAGTGATTTTCCTTTAT....................................................	22	1	1	5.00	5	5	0	0	0	0	0
....................................................AAAGTAACGATCGTTGTGATAT.............................................................................................	22	1	1	5.00	5	5	0	0	0	0	0
.............................................................................................TGTCACAGTGATTTTCCTTTAC....................................................	22	2	1	5.00	5	5	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTG.................................................................................................	18	0	1	5.00	5	3	1	0	1	0	0
...............................................................................................TCACAGTGATTTTCCTTTATA...................................................	21	0	1	5.00	5	3	0	2	0	0	0
....................................................AAAGGAACGATCGTTTTGATAT.............................................................................................	22	1	1	4.00	4	2	2	0	0	0	0
.............................................................................................TGTCACAGTGATTTTCCTTTA.....................................................	21	1	1	4.00	4	4	0	0	0	0	0
.................................................................................................ACAGTGATTTTCCTTTATA...................................................	19	0	1	4.00	4	3	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATCTG............................................................................................	23	1	1	4.00	4	0	4	0	0	0	0
...................................................CAAAGGAACGATCGTTGTGATATG............................................................................................	24	1	1	4.00	4	4	0	0	0	0	0
.............................................................................................TATCACAGTGCTTTTCCTTTATA...................................................	23	1	1	4.00	4	4	0	0	0	0	0
.............................................................................................CATCACAGTGATTTTCCTTTATA...................................................	23	1	1	4.00	4	4	0	0	0	0	0
....................................................AAAGGAACGATCGCTGTGATAT.............................................................................................	22	1	1	4.00	4	2	2	0	0	0	0
.............................................................................................GATCACAGTGATTTTCCTTTAT....................................................	22	1	1	4.00	4	4	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTATC...................................................	23	1	1	4.00	4	4	0	0	0	0	0
.............................................................................................AATCACAGTGATTTTCCTTTAT....................................................	22	1	1	4.00	4	4	0	0	0	0	0
.............................................................................................TATCAGAGTGATTTTCCTTTAT....................................................	22	1	1	4.00	4	3	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTAA....................................................	22	1	1	4.00	4	4	0	0	0	0	0
....................................................AAAGGAACGATCTTTGTGATAT.............................................................................................	22	1	1	4.00	4	3	1	0	0	0	0
............................................................................................CTATCACAGTGATTTTCCTTTATA...................................................	24	1	1	4.00	4	4	0	0	0	0	0
....................................................AAAGGAACGATCTTTGTGATATG............................................................................................	23	1	1	4.00	4	2	1	1	0	0	0
....................................................AAAGGAAAGATCGTTGTGATAT.............................................................................................	22	1	1	4.00	4	4	0	0	0	0	0
....................................................AAAGGGACGATCGTTGTGATAT.............................................................................................	22	1	1	4.00	4	4	0	0	0	0	0
..............................................................................................ATCACAGTGATTTTCCTTTATAA..................................................	23	0	1	4.00	4	4	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGTTAT.............................................................................................	22	1	1	4.00	4	3	1	0	0	0	0
................................................................................................CACAGTGATTTTCCTTTAT....................................................	19	0	1	4.00	4	4	0	0	0	0	0
....................................................AAAGGAACGATCGTCGTGATAT.............................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.............................................................................................TATCACAGGGATTTTCCTTTAT....................................................	22	1	1	3.00	3	1	0	2	0	0	0
....................................................AAAGGAACGATCGTTGTGATGTG............................................................................................	23	1	1	3.00	3	0	3	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTC......................................................	20	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATACG............................................................................................	23	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACGAACGTTGTGATATG............................................................................................	23	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGTACGATCGTTGTGATAT.............................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATAGG............................................................................................	23	1	1	3.00	3	0	2	1	0	0	0
.............................................................................................GATCACAGTGATTTTCCTTTATA...................................................	23	1	1	3.00	3	2	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGCTATG............................................................................................	23	1	1	3.00	3	0	3	0	0	0	0
....................................................AAAGGAACGATCGTTGTGAAATG............................................................................................	23	1	1	3.00	3	3	0	0	0	0	0
......................................................ATGAACGATCGTTGTGATATG............................................................................................	21	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAATGATCGTTGTGATAT.............................................................................................	22	1	1	3.00	3	2	1	0	0	0	0
..............................................................................................ATAACAGTGATTTTCCTTTATA...................................................	22	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACAATCGTTGTGATAT.............................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.............................................................................................TATCACAGTAATTTTCCTTTAT....................................................	22	1	1	3.00	3	2	0	1	0	0	0
....................................................AAAGGAACGATCGTTATGATATG............................................................................................	23	1	1	3.00	3	0	2	0	0	0	1
....................................................AAAGGAACGATCGGTGTGATAT.............................................................................................	22	1	1	3.00	3	1	2	0	0	0	0
....................................................AGAGGAACGATCGTTGTGATAC.............................................................................................	22	2	1	3.00	3	3	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTT.......................................................	19	0	1	3.00	3	1	2	0	0	0	0
....................................................AGAGGAACGATCGTTGTGAT...............................................................................................	20	1	1	3.00	3	3	0	0	0	0	0
.............................................................................................TATCGCAGTGATTTTCCTTTAT....................................................	22	1	1	3.00	3	2	1	0	0	0	0
..............................................................................................ATCTCAGTGATTTTCCTTTAT....................................................	21	1	1	3.00	3	3	0	0	0	0	0
....................................................AGAGGAACGATCGTTGTGATATGT...........................................................................................	24	2	1	3.00	3	3	0	0	0	0	0
......................................................AGGAACGATCGTTGTGATAT.............................................................................................	20	0	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGCTAT.............................................................................................	22	1	1	3.00	3	0	3	0	0	0	0
....................................................AAAGGAACGATCGTTGGGATAT.............................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACGATCGTTGCGATATG............................................................................................	23	1	1	3.00	3	1	2	0	0	0	0
....................................................AAAGGAACGTTCGTTGTGATATG............................................................................................	23	1	1	3.00	3	2	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTTCTTTAT....................................................	22	1	1	3.00	3	3	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATACC............................................................................................	23	2	1	3.00	3	2	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTATAT..................................................	24	1	1	3.00	3	3	0	0	0	0	0
....................................................GAAGGAACGATCGTTGTGATATG............................................................................................	23	1	1	3.00	3	2	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTATG...................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGCACGATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGATCGCTATGATATG............................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
................................................................................................CACAGTGATTTTCCTTTATA...................................................	20	0	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTGAGATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTATAC..................................................	24	1	1	2.00	2	2	0	0	0	0	0
....................................................TAAGGAACGATCGTTGTGATA..............................................................................................	21	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATGTTA.........................................................................................	26	3	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAATGATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATTTG............................................................................................	23	1	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAACGGTCGTTGTGATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................TATCACAGTGGTTTTCCTTTATA...................................................	23	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................TGTTACAGTGATTTTCCTTTAT....................................................	22	2	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTCTGATATG............................................................................................	23	1	1	2.00	2	0	2	0	0	0	0
....................................................GGAGGAACGATCGTTGTGATATG............................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGTACGATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAAGAACGATCGCTGTGATATG............................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAGCGATCGTTGTGATAT.............................................................................................	22	1	1	2.00	2	0	2	0	0	0	0
....................................................ACAGGAACGATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................TATCACAGTTATTTTCCTTTAT....................................................	22	1	1	2.00	2	2	0	0	0	0	0
..............................................................................................AGCACAGTGATTTTCCTTTAC....................................................	21	2	1	2.00	2	2	0	0	0	0	0
....................................................AACGGAACGATCGTTGTGATAT.............................................................................................	22	1	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATCACACTGATTTTCCTTTAT....................................................	22	1	1	2.00	2	1	1	0	0	0	0
....................................................ATAGGAACGATCGTTGTGATAC.............................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTCAT....................................................	22	1	1	2.00	2	2	0	0	0	0	0
................................................GATCAAAGGAACGATCGTTGTGATATG............................................................................................	27	2	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATTACAGTGATTTTCCTTTATAA..................................................	24	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAAAGATCGTTGTGATA..............................................................................................	21	1	1	2.00	2	2	0	0	0	0	0
.............................................................................................TTTCACAGTGATTTTCCTTTA.....................................................	21	1	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATCACAGTGATTCTCCTTTAT....................................................	22	1	1	2.00	2	1	1	0	0	0	0
..............................................................................................ATCACAGTGATTTTCCTTTA.....................................................	20	0	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATTA...........................................................................................	24	2	1	2.00	2	0	2	0	0	0	0
.............................................................................................TATCACAGTGATCTTCCTTTATA...................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................AAATGAACGATCGTTGTGATA..............................................................................................	21	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTAATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATAG.............................................................................................	22	1	1	2.00	2	0	2	0	0	0	0
.............................................................................................TATCACAGAGATTTTCCTTTAT....................................................	22	1	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAACGATCGTTGTTATAT.............................................................................................	22	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTTCTTTATA...................................................	23	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAAGAACGATCGTTGTGATAT.............................................................................................	22	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................AATCACAGTGATTTTCCTTTATA...................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................GAAGGAACGATCGTTGTGATAT.............................................................................................	22	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACCATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATAA.............................................................................................	22	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGCAACGATCGTTGTGATAT.............................................................................................	22	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGATCGTTGATAT...............................................................................................	20	2	1	2.00	2	2	0	0	0	0	0
...........................................................................................TCTATCACAGTGATTTTCCTTTAT....................................................	24	2	1	2.00	2	2	0	0	0	0	0
...................................................CAAAGGAACGATCGTTGTGATAT.............................................................................................	23	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGTAACGATCGTTGTGATATT............................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
.........................................................AACGATCGTTGTGATATG............................................................................................	18	0	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATATGAT..........................................................................................	25	2	1	2.00	2	0	0	0	2	0	0
..................................................TAAAAGGAACGATCGTTGTGAT...............................................................................................	22	0	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGATCGATGTGATAT.............................................................................................	22	1	1	2.00	2	1	1	0	0	0	0
....................................................AGATGAACGATCGTTGTGATATG............................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATCACATTGATTTTCCTTTAT....................................................	22	1	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAACGATCGTTGCGATAT.............................................................................................	22	1	1	2.00	2	0	2	0	0	0	0
....................................................AAATGAACGATCGTTGTGATAC.............................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
..............................................................................................ATCACAGTGATTTTCCTTT......................................................	19	0	1	2.00	2	1	0	1	0	0	0
.............................................................................................TGTCACAGTGATTTTCCTTTATAA..................................................	24	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGACCGTTGTGATAT.............................................................................................	22	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGACCGTTGTGATATG............................................................................................	23	1	1	2.00	2	1	0	0	0	1	0
.............................................................................................TATCACAGTGATTTTCCTTAAT....................................................	22	1	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATTACAGTGATTTTCCTTTA.....................................................	21	1	1	2.00	2	2	0	0	0	0	0
....................................................AAAGGAACGATCGTTTTGATAC.............................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
.............................................................................................TATCACAGCCATTTTCCTTTAT....................................................	22	2	1	2.00	2	0	2	0	0	0	0
....................................................CAAGGAACGATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
.............................................................................................TATCACAGTGATCTTCCTTTAT....................................................	22	1	1	2.00	2	1	0	0	0	1	0
....................................................AAAGGAACGATGGTTGTGATATG............................................................................................	23	1	1	2.00	2	1	0	0	0	1	0
....................................................AAAGGAACGATCGCTGTGAT...............................................................................................	20	1	1	2.00	2	1	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTTATATT............................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
....................................................AAAGGAACGATCGTTGTCATATG............................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
....................................................ATAGGAACGATCGTTGTGAT...............................................................................................	20	1	1	2.00	2	2	0	0	0	0	0
...............................................................................................TCACAGTGATTTTCCTTTATAA..................................................	22	0	1	2.00	2	2	0	0	0	0	0
....................................................AAACGAACGATCGTTGTGATATG............................................................................................	23	1	1	2.00	2	0	1	0	0	0	1
..............................................................................................ATCACAGTGATTTTCCTTTTT....................................................	21	1	1	2.00	2	1	0	1	0	0	0
....................................................AAAGAAACGATCGTTGTGATATG............................................................................................	23	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGAGTGTTGTGATATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCACAGTGCTTTTCCTTTATAA..................................................	24	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGGACGATCGTTGTGAGATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCGTTTAT....................................................	22	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTACTTTAT....................................................	22	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGTTGGGATATGT...........................................................................................	24	2	1	1.00	1	1	0	0	0	0	0
............................................................................................GTATCACAGTGATTTTCCTTTAT....................................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGGGGTGTG............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
....................................................AAAGCAACGATCGTCGTGGTAT.............................................................................................	22	3	1	1.00	1	0	1	0	0	0	0
....................................................ACAGGAACGATCGTTGTGACATT............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
.............................................................................................AATCACAGTGAATTTCCTTTATA...................................................	23	2	1	1.00	1	0	1	0	0	0	0
..............................................................................................ATAACAGTGATTTTCCTTTA.....................................................	20	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTAATA...................................................	23	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGCTCTTCCTTTAT....................................................	22	2	1	1.00	1	0	1	0	0	0	0
.........................................................................................GATCTATCACAGTGATTTTCCTTTA.....................................................	25	3	1	1.00	1	1	0	0	0	0	0
.............................................................................................TAGCACAGTGATTTTCCTTTAT....................................................	22	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTGC....................................................	22	2	1	1.00	1	1	0	0	0	0	0
....................................................AAACGAACGATCGTTGCGATATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACTATTGTTGTGATATG............................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
....................................................AAAGTAACGATCGTTTTGATATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGAGATG............................................................................................	23	1	1	1.00	1	0	1	0	0	0	0
............................................................................................CTACCACAGTGATTTTCCTTTAT....................................................	23	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................TCACAGTGGTTTTCCTTTAT....................................................	20	1	1	1.00	1	0	0	1	0	0	0
.............................................................................................TATCACAGTGATTTTCCGTTAT....................................................	22	1	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATTTCAGTGATTTTCCTTTAT....................................................	22	2	1	1.00	1	1	0	0	0	0	0
............................................................................................CGATCACAGTGATTTTCCTTTAT....................................................	23	2	1	1.00	1	1	0	0	0	0	0
................................ATTCTAAGAACCATTCGCTA...................................................................................................................	20	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGATT..............................................................................................	21	1	1	1.00	1	0	0	0	0	0	1
....................................................AAAGGACCGATCGTTGTGATAT.............................................................................................	22	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTCATAT.............................................................................................	22	1	1	1.00	1	1	0	0	0	0	0
....................................................ATAGGAACGATCGTTGCGATATG............................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGCT...............................................................................................	20	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGGACGATCGTTGTGGTAT.............................................................................................	22	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATGACGGTGATTTTACTTTATA...................................................	23	3	1	1.00	1	0	1	0	0	0	0
....................................................TAAGGAACGATCGTTGTGATATGT...........................................................................................	24	2	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGAGAT.............................................................................................	22	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGCTGTGATATC............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCGCAGTGATTTTCCTTTATA...................................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTTCGATATT............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAGCGATCGTTGTCATATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGCAACGATCGTTGTGATATG............................................................................................	23	1	1	1.00	1	0	1	0	0	0	0
............................................................................................TTATCACAGTGATTTTCCTTTAT....................................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGGTCGTTGCGAT...............................................................................................	20	2	1	1.00	1	0	1	0	0	0	0
....................................................TAAGGAACGATCGTCGTGATATT............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
..............................................................................................ATCACAGTGATTTTCCTTTATATT.................................................	24	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................TACCACAGTGCTTTTCCTTTAT....................................................	22	2	1	1.00	1	1	0	0	0	0	0
.........................................................................................GATTTATCACAGTGATTTTCCTTTAT....................................................	26	3	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGGACGCTCGCTGTGATAT.............................................................................................	22	3	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCACAGTGACATTCCTTTATA...................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACAATCGCTGTGATCT.............................................................................................	22	3	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGTACGATCGTTGTGGTGTG............................................................................................	23	3	1	1.00	1	0	0	0	0	0	1
.............................................................................................TATCATAGTGATTTTCCTTTAT....................................................	22	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGTAACGATCCTTGTCATATG............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGTTGTGTGATG............................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
............................................................................................CGATCACAGTGATTTTCCTTTATC...................................................	24	3	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTCATAC.............................................................................................	22	2	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGAGATAT.............................................................................................	22	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................CATCACAGTGATTTTCCTTTA.....................................................	21	1	1	1.00	1	1	0	0	0	0	0
....................................................CAAGGAACGATCGTTGTGAT...............................................................................................	20	1	1	1.00	1	0	1	0	0	0	0
....................................................AATGGAACGATCGTTGTGATAT.............................................................................................	22	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACTATCTTTGTGATATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TAACACACAGATTTTCCTTTATA...................................................	23	3	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCACAGTGTTTTTCCTTTATA...................................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATTGTTGTGATATG............................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................AGGGGAACGATCGTTGTGATAT.............................................................................................	22	2	1	1.00	1	1	0	0	0	0	0
..................................................TCAAAGGAACGATCGTTGTGATATGT...........................................................................................	26	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGAATTTCCTTTAT....................................................	22	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGGGATAC.............................................................................................	22	2	1	1.00	1	1	0	0	0	0	0
....................................................AGAGGAACGATCGTTGTGATATGA...........................................................................................	24	2	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGCACGATCGTTGTGGTATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGCTATCATATG............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGGTCGTTGTGTTATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCACAGTGGTTTTCCTTTAT....................................................	22	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGACCGATCGTTGTGATATT............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGATCTGATAT.............................................................................................	22	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGATGTTCCTTTATA...................................................	23	1	1	1.00	1	0	1	0	0	0	0
...............................TATTCTAAGGACCATTCGCTA...................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATGGTTGTGAT...............................................................................................	20	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTGTA...................................................	23	1	1	1.00	1	1	0	0	0	0	0
..............................................................................................ATCACAGTGATTTTCCTTTATT...................................................	22	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTTGTGCTATT............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................TATCACAGTGATTTTCTTTTATA...................................................	23	1	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACTCTCGTTGTGCTATG............................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
..............................................................................................AGCACAGTGATTTTCCTTTATAA..................................................	23	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TATCACAGTGATTTTCCTTTC.....................................................	21	1	1	1.00	1	0	1	0	0	0	0
..............................................................................................ATGACAGTGATTTTCCTTTATA...................................................	22	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TACCACAGTGATTTTCCTTTA.....................................................	21	1	1	1.00	1	1	0	0	0	0	0
..............................................................................................ATCACAGTTATTTTCCTTTAT....................................................	21	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................TTTCACAGTGACTTTCCTTTAT....................................................	22	2	1	1.00	1	0	1	0	0	0	0
....................................................ACAGCAACGATCGTTGAGATA..............................................................................................	21	3	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGAACGATCGTTGGGATGTG............................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGAACGATCGTAGTGATAT.............................................................................................	22	1	1	1.00	1	1	0	0	0	0	0
...............................................................................................TCATAGTGATTTTCCTTTATA...................................................	21	1	1	1.00	1	1	0	0	0	0	0
....................................................AAAGGGACGATCGTTGTGTTATG............................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
....................................................AAAGGCACGATCTTTGTGCTAT.............................................................................................	22	3	1	1.00	1	0	1	0	0	0	0

GTTTACACTGATAAGCTTTTTTTTACATTTTATAAGATTCCTGGTAAGCGATTTTCCTTGCTAGCAACACTATACGCAAATAGGGAGCAATGTATAGTGTCACTAAAAGGAAATATTGCGTACGTCAACAGGTTTTACGTAGTTTTTATTGCTCAATCCACTGTCCT ***********************************......(((.((.(((((((((.(((((((((((((((((.........))...)))))))))))))))))))))).)).)).))).......***********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V106 head	V055 head
...........................................................................................GTATAGTGTTGCTAGAAGGAAA......................................................	22	3	2	0.50	1	1	0	0	0
.............................................................................................................................CAACAGGCTTTAGGTAGT........................	18	2	8	0.13	1	0	0	1	0
.....................................................TTCCATGCTTGCAACAGTA...............................................................................................	19	3	12	0.08	1	0	1	0	0
.............................................................................................ATAGTGACACAAAAAGGA........................................................	18	2	14	0.07	1	0	1	0	0
..............................................................................AATAGGGAGCAATGGGCA.......................................................................	18	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Type	Alignment
droAna3	scaffold_13266:9731632-9731798 +	dan-mir-5	Known_mirbase	CAAATGTGACT------ATTCGAAAAAA-----------------------AAT-----G-----TAAA------------------ATA---------TTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGC----AG-TTGTCCAAAAT-GCATC-AA-AAAT-----------AACGA-----G----------TTAGG---TGACAGGA
droBip1	scf7180000396427:874591-874751 +			AAAAAAT-------------TAAATAAA-----------------------A---------------AAGT---GAA----------ATA---------TCCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CA-TTGTCCAAAAT-TCATC-AG-AGAT-----------------CG-AGTTAGTG-A--CT---TGA----AGGA
droKik1	scf7180000302679:89044-89216 -			AGGATATGTC------------CTAAA--------------------------------------CCAAGT---GATAT---CT-CAAGC---------TAACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-TTCC--CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----TC-AAGTCCAAGAT-TCAAC-GA-TTGA----------TCAGTTCTAAGGTTC-TA-T-GA---------GCAAGG
droFic1	scf7180000454039:847743-847903 -			TT------------------------------------------------------------------AGT---GATTC------CTAAA---------GTACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTTA----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CG-TTGTCCAAAGC-TCATC-AA-AGGAAAAA------ACATACTTAAAGTTACAA-T--TTTAG---TGA--TGA
droEle1	scf7180000491201:2013688-2013848 -			CAA--------------------TACAA-----------------------AAA-----G-----TTGAGT---GAACC------CCGCT---------TACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----TTAACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAAAAC-TCATC-GATGGGAAA--------TACAATCCAAAA--------------------ACAGTT
droRho1	scf7180000780066:73895-74069 +			AACAT--TACA------ATTCAATAAAA-----------------------CAA-----G-----TTGAGT---GATCC------CTACA---------TTTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAATAC-TCATC-GA-GGGAAA--------TAAGATTCGAAATTATC-----------------AGTT
droBia1	scf7180000302143:3059515-3059677 -			CCA--------------------TAAAT-----------------------CAA-----T-----TTGAGT---GATCC------CCACG---------TATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----ATGAAGCCCAAAGC-TCATC-AA-GGGAAA--------TACCATCCGAAATTACC------------------TGT
droTak1	scf7180000415384:84311-84453 +			TAA--------------------------------------------------------G-----TTGAGT---GATCC------CAGCA---------TAACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CTTAAGCCCCAAAA-ACATC-AA-GGGATA--------TACTAT------------------------------TA
droEug1	scf7180000409474:2397100-2397244 +			TA------------------------------------------------------------------AGT---GTTAC------CAAAA---------CTACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTC-TTTT----GTTACATATCACAGTGATTTTCCTTTGTAACGCATGT----CTAATGCCCACTAT-TCATC-AA-GGTTA---------TTAAACTAAT-A----------CT-----------CAG
dm3	chr2R:15548620-15548780 -	dme-mir-5	Known_mirbase	AC--------G------AGTCAAGAAAT-----------------------TAT-----G-----TTAAGT---GATCC------CCAAA---------TTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTTC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAAC-TCATC-AA-GGAAAA--------TGAAAGTCAA--------------------------AG
droSim2	2r:16195877-16196046 -	dsi-mir-5	Known_mirbase	TCA-------------------AGAAAT-----------------------CAA-----G-----TTAAGT---TATCA------CCAAA---------TTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC-----CAACATATCACAGTGATTTTCCTTTATATCGCATGT----TAAAAGTCCACAAT-TCATC-AA-GGAAAA--------TGAAAGCCA-AGTTGGCA-G--CT---TAC----TAAA
droSec2	scaffold_1:13063335-13063495 -	dse-mir-5	Known_mirbase	CAA--------------------------------------------------------G-----TTAAGT---GATCC------CCAAA---------TTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC----CGAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAAT-TCATC-AA-GGAAAA--------TTA-AGCCA-AGTTGGCA-G--CT---TAC----TAAA
droYak3	2R:13624007-13624180 +	dya-mir-5	Known_mirbase	CAT----TACG------GGTCAAGAAAT-----------------------CGA-----G-----TTAAGT---GTTCC------CCCAA---------TTTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----ACAAAGTCCACAAC-TCATC-AA-GGGAAA--------TGAAAGCCAAAGTCGGCA-T----------------CT
droEre2	scaffold_4845:9748859-9749022 -	der-mir-5	Known_mirbase	CAAA-----------------------T-----------------------CCA-----G-----TTAAGT---GATCC------CCTAA---------TTTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----AAAAAGTCCAAAAC-TCATC-AATGGGAAA--------TGAAAGCCAAAGTTGCCA-G--CT------------TA
dp5	3:12677190-12677352 -	dps-mir-5	Known_mirbase	CCAGTGT-------------CA-------------------------------------------TTGATTA--GTTCC------CAACT---------TCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGC-CACAC-AT-GGGAAA--------CGAAAC-----G----------CTCAG---CGGTGGAG
droPer2	scaffold_2:8906270-8906482 +	dpe-mir-5	Known_mirbase	CAACCACACCC------ACACCAACACCAACACCCATACCCACCCTCACATCCATCCCAGTGTCATTGATTA--GCTCC------CAACT---------TCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGC-CACAC-AT-GGGAAA--------CGAAAC-----A----------CTCAG---CGATGGAG
droWil2	scf2_1100000004514:1651417-1651573 -	dwi-mir-5	Known_mirbase	CAA--------------------------------------------------------G-----TT---T---CATCG------TCGTTT--------TTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTC-ACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTT--CTGTCCAATATATCAAC-A----A-----------TATCCAGCAAAGTTTTCA-A------------G--TGG
droVir3	scaffold_12875:4112410-4112591 +	dvi-mir-5	Known_mirbase	AATCT--GACC------A-----TATAT-----------------------ATA-----T-----CTG-----ATATTC------TCGTATACTATATATAAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTA-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC--------AGCCCGTAAA-GCAAC-AC-CACA----------TACGATCTATA--TCCATGTC-T-------ATATAGAC
droMoj3	scaffold_6496:20936417-20936598 -	dmo-mir-5	Known_mirbase	TATATACATCTATGAAAAG-TTTTTATG-----------------------A---------------AAGT-----TCAAAATGCAAACT----CG---ATGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATCG-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----AG-TCCCCCA-GAC-T--ACAAT-ATGAAT--------GTGAAT-----A----------TTTAT---AAG-TGTA
droGri2	scaffold_15112:2108480-2108651 -	dgr-mir-5-1	Known_mirbase	TGTATATAATA------TTCCTGATATA----------------------------------------TGT-GTTAA----------AGT---------CGTTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----T--CTGCCCAAAAC-TCAAC-TA-ACCAGT--GTTGAATAACTAGTG-------------A---------AGAGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CAAATGTGACT------ATTCGAAAAAA-----------------------AAT-----G-----TAAA------------------ATA---------TTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGC----AG-TTGTCCAAAAT-GCATC-AA-AAAT-----------AACGA-----G----------TTAGG---TGACAGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	3433.00	3433	140	2558	681	21	20	13
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	1891.00	1891	33	1648	199	1	2	8
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	1454.00	1454	31	1141	252	7	10	13
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	721.00	721	40	593	87	0	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	243.00	243	2	217	20	0	3	1
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	154.00	154	2	105	26	4	11	6
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	147.00	147	5	128	13	0	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	117.00	117	0	117	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	110.00	110	0	110	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	64.00	64	0	61	3	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	64.00	64	1	21	39	0	0	3
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	64.00	64	2	55	6	1	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	54.00	54	6	43	5	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	23.00	23	2	9	9	0	0	3
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	23.00	23	0	19	4	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	19.00	19	0	19	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	17.00	17	0	13	3	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	16.00	16	0	16	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	13.00	13	10	3	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAC.........................................................................................	21	1	10.00	10	0	10	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	9.00	9	0	7	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	8.00	8	0	7	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	7.00	7	0	4	3	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	7.00	7	1	6	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	7.00	7	4	3	0	0	0	0
...................................................................................................TTCTAAGGACCATTCGCTA..........................................................................................................................................................	19	1	6.00	6	0	5	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	6.00	6	0	6	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	6.00	6	0	6	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	5.00	5	0	4	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	5.00	5	0	3	1	0	0	1
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	5.00	5	2	3	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	4.00	4	0	3	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATC........................................................................................	23	1	4.00	4	0	4	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAA.........................................................................................	22	1	4.00	4	0	4	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	4.00	4	0	4	0	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTAT.........................................................................................	19	1	4.00	4	0	4	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTC...........................................................................................	20	1	3.00	3	0	3	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	3.00	3	0	1	2	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	3.00	3	0	2	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	3.00	3	0	3	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATG........................................................................................	23	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTATA........................................................................................	20	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.......................................................................................	24	1	2.00	2	0	2	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTTA................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	2.00	2	0	1	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTA..................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAG....................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAT.................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTT...........................................................................................	19	1	2.00	2	1	1	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTGC.........................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATATT......................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................TA---------TTCTAAGGACCATTCGCTA..........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATT........................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTC..........................................................................................	21	1	1.00	1	0	0	1	0	0	0

droBip1

AAAAAAT-------------TAAATAAA-----------------------A---------------AAGT---GAA----------ATA---------TCCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CA-TTGTCCAAAAT-TCATC-AG-AGAT-----------------CG-AGTTAGTG-A--CT---TGA----AGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGATATGTC------------CTAAA--------------------------------------CCAAGT---GATAT---CT-CAAGC---------TAACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-TTCC--CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----TC-AAGTCCAAGAT-TCAAC-GA-TTGA----------TCAGTTCTAAGGTTC-TA-T-GA---------GCAAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT------------------------------------------------------------------AGT---GATTC------CTAAA---------GTACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTTA----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CG-TTGTCCAAAGC-TCATC-AA-AGGAAAAA------ACATACTTAAAGTTACAA-T--TTTAG---TGA--TGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAA--------------------TACAA-----------------------AAA-----G-----TTGAGT---GAACC------CCGCT---------TACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----TTAACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAAAAC-TCATC-GATGGGAAA--------TACAATCCAAAA--------------------ACAGTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACAT--TACA------ATTCAATAAAA-----------------------CAA-----G-----TTGAGT---GATCC------CTACA---------TTTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAATAC-TCATC-GA-GGGAAA--------TAAGATTCGAAATTATC-----------------AGTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCA--------------------TAAAT-----------------------CAA-----T-----TTGAGT---GATCC------CCACG---------TATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----ATGAAGCCCAAAGC-TCATC-AA-GGGAAA--------TACCATCCGAAATTACC------------------TGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAA--------------------------------------------------------G-----TTGAGT---GATCC------CAGCA---------TAACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CTTAAGCCCCAAAA-ACATC-AA-GGGATA--------TACTAT------------------------------TA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TA------------------------------------------------------------------AGT---GTTAC------CAAAA---------CTACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTC-TTTT----GTTACATATCACAGTGATTTTCCTTTGTAACGCATGT----CTAATGCCCACTAT-TCATC-AA-GGTTA---------TTAAACTAAT-A----------CT-----------CAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AC--------G------AGTCAAGAAAT-----------------------TAT-----G-----TTAAGT---GATCC------CCAAA---------TTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTTC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAAC-TCATC-AA-GGAAAA--------TGAAAGTCAA--------------------------AG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	1000024.00	1000024	0	0	0	0	9	0	182	1884	576	116	3	0	1	2	0	0	0	0	0	0	4	0	8	0	0	8	2	0	1	0	0	0	0	0	1601	9	33	4	14	10	3	13	50	1	29	13	31	3	12	12	32	8	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	28552	5412	8050	9218	2656	0	3	3	3	2	16	1	2	41	2	0	29	20	13	21	111	0	14	0	11	416	438	11	0	0	2980	131	1	1308	3	9	12	0	1	0	9	9	32	0	1	0	0	0	0	0	0	0	0	3	1	7	0	0	8361	65167	65329	16740	2572	113	26	17	19	60	29	18	44	30	3	13	2	1	0	1	17	0	9	6	1	0	26	57	0	11	0	0	9	11	0	6	1	9	3	16	1	17	2	12	2	0	42	7	5	7	71	0	2	0	1	0	6	84	1	128	5	36	12	56	8	23	0	9	0	0	0	16	26	13	43	23	7	17	34	136	27	174	39	2237	15	962	172	16	27	130	0	0	0	0	21143	10650	8	2	2	0	4	7	3	2	3	0	56	7	3	2	3	6	172	9	3	2	10	5	13	8	3	7	12	9	37	5	14	3	37	201	7	44	29	189	23	176	9	15	15	23	22	38	19	26	25	671914	62515	66	84	134	7	16	100	36	132	23	31	9	10	7	51	72	178	120	15	32	184	25	57	10	25	116	38	17	8	12	52	11	137	507	2410	16	43	11	10	10	24	0
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	136122.00	136122	0	0	0	0	3	1	54	861	318	184	4	0	1	0	0	0	0	0	0	0	0	2	5	0	0	2	3	0	1	0	0	0	0	0	1026	0	3	1	1	0	1	8	16	0	21	5	4	3	4	0	10	4	6	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	3	3	0	14815	1631	5732	6372	793	2	2	4	6	9	4	1	2	15	1	1	63	21	19	38	57	0	13	1	13	130	135	0	0	0	1574	206	1	680	0	3	2	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	3	2	0	0	394	1989	2152	2265	396	80	4	1	5	11	18	4	7	11	3	2	0	1	0	1	2	0	0	6	0	0	21	44	0	11	1	0	24	11	0	5	1	6	2	25	6	15	0	0	22	0	73	1	7	4	11	0	0	0	1	0	6	98	0	31	0	4	1	59	12	5	2	24	0	0	0	36	20	10	17	20	8	12	23	155	23	134	36	1563	13	911	453	46	52	283	0	0	0	0	4424	3866	3	2	2	2	5	0	2	1	5	2	14	0	1	0	0	5	58	0	1	1	4	0	5	2	0	5	4	7	30	4	6	4	35	222	4	33	22	164	10	127	7	10	13	7	11	10	11	8	8	64342	13732	26	13	50	4	12	42	15	44	11	8	3	3	3	45	23	42	47	16	9	108	22	27	8	14	61	10	13	6	12	36	8	126	482	810	7	31	6	11	16	6	0
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......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	13538.00	13538	0	0	0	0	0	0	4	40	32	39	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	1016	0	1	0	0	0	1	2	3	0	10	0	0	1	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	406	139	187	761	44	0	0	2	0	3	0	0	2	1	0	0	11	5	3	6	4	0	0	5	2	10	5	0	0	0	121	40	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	94	458	851	129	22	13	0	1	1	1	1	0	0	3	0	5	1	0	0	0	5	0	0	1	0	0	3	9	0	1	1	0	0	0	1	1	0	2	2	0	0	0	1	0	0	1	3	3	0	1	1	0	0	0	0	0	2	0	0	13	0	5	0	7	3	0	0	0	0	0	0	1	1	1	0	1	0	2	1	11	0	1	2	65	0	46	32	7	10	19	0	0	0	0	905	517	0	2	0	0	0	0	0	0	2	0	1	0	0	0	0	2	6	1	0	0	0	0	1	2	1	1	1	2	3	1	1	2	1	18	0	6	2	10	1	4	2	1	1	3	4	3	3	4	3	3257	3757	3	2	9	1	3	8	0	1	1	2	0	4	1	2	2	2	2	6	4	18	2	2	0	4	14	0	3	0	0	8	0	9	48	37	0	4	1	2	1	5	0
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	11581.00	11581	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	8648	0	0	0	0	0	0	0	1	0	8	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	4	2	20	16	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	46	41	44	38	10	12	0	0	0	0	3	2	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	2	0	2	0	0	0	0	1	0	0	0	0	0	4	0	0	3	10	1	2	0	0	1	0	0	0	0	0	0	1	14	0	5	0	5	0	0	0	0	0	1	0	0	0	9	6	6	2	3	2	8	3	5	1	2	0	7	0	12	17	0	0	15	0	0	0	0	146	133	0	0	2	2	0	0	0	1	1	0	2	0	3	0	1	3	13	0	2	0	0	0	3	0	0	0	0	0	4	0	0	0	2	19	0	4	1	10	0	5	2	3	2	1	2	2	1	3	5	420	1161	4	1	13	1	1	0	0	2	4	3	5	5	3	6	1	0	7	20	8	54	5	8	7	1	43	4	7	2	11	103	2	25	98	67	3	12	5	9	4	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	6896.00	6896	0	0	0	0	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	1	1	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	885	1233	45	64	12	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	2	3	0	1	0	6	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	117	836	878	104	5	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	1	1	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	5	0	3	8	2	0	2	0	0	0	0	268	81	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	1	0	2	0	2	0	0	1	0	2	0	1	0	0	0	0	1	0	0	0	0	1	1	2043	181	0	1	2	0	1	0	1	0	0	2	0	1	0	2	0	2	0	0	0	4	0	1	0	0	5	0	1	0	0	2	0	0	7	8	0	3	0	1	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	3934.00	3934	0	0	0	0	0	0	8	44	17	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	912	421	214	234	194	0	0	1	2	0	4	0	0	0	0	0	1	3	0	1	1	0	0	0	1	22	30	0	0	0	59	4	0	47	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	54	50	60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	13	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	9	0	41	0	90	0	0	0	0	0	0	0	0	36	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1230	26	1	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	6	0	0	0	0	1	0	0
...................................................................................................TTCATCGGGCCATTCGCTA..........................................................................................................................................................	19	1	2959.00	2959	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	300	132	14	12	392	0	1	0	0	0	2	0	0	2	0	0	2	0	1	0	10	0	0	0	0	44	65	3	0	0	47	2	1	158	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	242	209	488	136	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	37	22	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	560	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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...................................................................................................TTCATCGGGCCATTCGCTACTG.......................................................................................................................................................	22	1	117.00	117	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	117	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	108.00	108	0	0	0	0	0	0	5	22	10	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	1	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	0	0	1	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................ATATCACAGTGATTTTCCTTTATA........................................................................................	24	1	107.00	107	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	4	15	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	100.00	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	17	31	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	0	0	0	4	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGATC................................................................................................................................	26	1	94.00	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATC.....................................................................................................................................	21	1	76.00	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	76.00	76	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	7	21	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCA-------------------AGAAAT-----------------------CAA-----G-----TTAAGT---TATCA------CCAAA---------TTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC-----CAACATATCACAGTGATTTTCCTTTATATCGCATGT----TAAAAGTCCACAAT-TCATC-AA-GGAAAA--------TGAAAGCCA-AGTTGGCA-G--CT---TAC----TAAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	153742.00	153742	94	63	54838	118	0	0	1087	414	50744	40006	31	5824	125	397	0	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	122204.00	122204	87	64	53472	53	1	3	320	123	31001	34192	32	1991	140	695	7	3	20
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	36713.00	36713	105	32	28658	5	0	11	32	19	3673	3823	3	239	6	103	0	0	4
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	10151.00	10151	198	41	8774	3	0	1	8	7	444	314	2	318	3	36	0	0	2
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	4563.00	4563	0	0	71	43	1	7	41	8	1502	1439	0	1451	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	3927.00	3927	0	0	75	41	1	7	3	0	718	697	0	2377	0	5	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	1342.00	1342	1	0	880	1	0	0	2	2	197	232	0	24	0	3	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	1338.00	1338	1	3	956	1	0	0	2	0	132	214	0	26	0	3	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	927.00	927	0	0	3	4	0	2	4	0	327	463	0	124	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	851.00	851	1	1	803	0	0	0	0	0	21	19	0	2	0	4	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	808.00	808	0	0	8	6	1	3	0	0	252	228	0	309	1	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	712.00	712	0	0	326	0	0	0	3	3	152	126	0	40	0	62	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	347.00	347	0	1	345	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	321.00	321	8	1	209	0	0	5	3	0	31	37	3	11	0	13	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	278.00	278	6	0	271	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	247.00	247	0	0	99	0	0	0	0	0	62	69	1	16	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	222.00	222	0	0	113	0	0	0	3	1	55	39	0	9	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	218.00	218	0	0	96	0	0	0	2	0	50	49	0	8	4	9	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	217.00	217	0	0	162	0	0	0	3	0	22	24	0	6	0	0	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATA.....................................................................................................................................	23	1	182.00	182	0	0	69	0	0	0	1	1	49	62	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAG....................................................................................................................................	22	1	180.00	180	1	0	176	0	0	0	0	0	0	1	0	1	0	1	0	0	0
...................................................................................................TTCATCGGGCCATTCGCTA..........................................................................................................................................................	19	1	159.00	159	0	1	149	0	0	0	1	0	0	1	0	7	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	152.00	152	0	0	10	1	0	0	2	0	34	40	0	65	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	121.00	121	1	2	81	0	0	0	1	0	10	11	0	1	1	13	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	116.00	116	0	0	107	0	0	0	1	0	1	6	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	111.00	111	0	0	95	0	0	0	0	0	11	3	0	2	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	93.00	93	0	0	33	14	0	0	0	0	31	14	0	1	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	79.00	79	0	0	0	0	0	0	1	0	20	17	0	41	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	70.00	70	0	0	25	12	0	0	0	0	15	17	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGG.......................................................................................................................................	19	1	69.00	69	0	0	68	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AGTGATTTTCCTTTATA........................................................................................	17	1	67.00	67	0	0	0	0	0	0	0	0	49	18	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAG......................................................................................................................................	20	1	65.00	65	0	0	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	56.00	56	0	0	41	0	0	0	0	0	6	8	1	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	47.00	47	0	0	4	1	0	3	1	0	3	4	0	30	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTT..................................................................................................................................	24	1	33.00	33	0	0	0	0	0	0	1	0	1	1	0	0	0	30	0	0	0
..........................................................................................................................GAACGATCGTTGTGATAT....................................................................................................................................	18	1	29.00	29	0	0	24	0	0	0	0	0	1	4	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	29.00	29	0	0	0	0	1	2	0	0	3	21	0	2	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	26.00	26	0	0	2	0	0	1	0	0	11	11	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAA.................................................................................................................................	25	1	26.00	26	0	0	13	0	0	0	0	0	6	7	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	25.00	25	0	0	16	1	0	0	0	0	3	5	0	0	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	23.00	23	0	0	8	1	0	0	0	0	6	8	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	23.00	23	0	0	9	0	0	0	0	0	7	7	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	21.00	21	0	0	2	0	0	1	0	0	7	5	0	6	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	20.00	20	0	0	0	0	0	0	0	0	0	3	0	17	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGATAT....................................................................................................................................	23	1	19.00	19	0	0	11	0	0	0	0	0	5	3	0	0	0	0	0	0	0
..........................................................................................................................GAACGATCGTTGTGATATG...................................................................................................................................	19	1	19.00	19	0	0	6	0	0	0	0	0	4	8	0	1	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	18.00	18	0	0	14	0	0	0	0	0	0	1	0	3	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATAT....................................................................................................................................	19	1	16.00	16	0	0	12	0	0	0	0	0	2	2	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAT.................................................................................................................................	25	1	15.00	15	0	0	13	0	0	0	0	0	0	0	0	1	0	1	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATA.....................................................................................................................................	20	1	14.00	14	0	0	12	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	14.00	14	0	0	1	0	0	0	0	1	4	5	0	3	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTT...........................................................................................................................................	15	1	14.00	14	0	0	0	0	0	0	0	1	6	7	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	13.00	13	0	0	0	0	0	0	0	0	2	4	0	7	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAAA...................................................................................................................................	23	1	12.00	12	0	2	4	0	0	0	0	0	3	1	0	0	0	2	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCT.............................................................................................	18	1	11.00	11	0	0	0	0	0	3	0	0	1	1	0	6	0	0	0	0	0
...........................................................................................................................AACGATCGTTGTGATAT....................................................................................................................................	17	1	11.00	11	0	0	0	0	0	0	0	0	3	6	2	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGAT......................................................................................................................................	18	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA......................................................................................	25	1	10.00	10	0	0	1	1	0	0	0	0	2	2	0	4	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGAT......................................................................................................................................	19	1	10.00	10	0	0	9	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTG..........................................................................................................................................	16	1	10.00	10	0	0	0	0	0	0	0	0	4	5	1	0	0	0	0	0	0
......................................................................................................................................................................CAGTGATTTTCCTTTATA........................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	2	7	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	9.00	9	0	0	7	0	0	0	0	0	0	1	0	0	0	1	0	0	0
........................................................................................................................................................................GTGATTTTCCTTTATA........................................................................................	16	1	8.00	8	0	0	0	0	0	0	0	0	6	2	0	0	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATA.....................................................................................................................................	18	1	8.00	8	0	0	3	0	0	0	0	0	1	4	0	0	0	0	0	0	0
.......................................................................................................................................................................AGTGATTTTCCTTTAT.........................................................................................	16	1	8.00	8	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATC........................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATA.....................................................................................................................................	19	1	7.00	7	0	0	6	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGAT......................................................................................................................................	21	1	7.00	7	0	0	6	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0
.........................................................................................A---------TTCATCGGGCCATTCGCTA..........................................................................................................................................................	20	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	6.00	6	0	0	0	1	0	1	0	0	0	1	0	3	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	3	2	0	1	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	1	1	0	4	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTC.................................................................................................................................	25	1	5.00	5	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

CAA--------------------------------------------------------G-----TTAAGT---GATCC------CCAAA---------TTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC----CGAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAAT-TCATC-AA-GGAAAA--------TTA-AGCCA-AGTTGGCA-G--CT---TAC----TAAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	28672.00	28672	392	15	27808	457
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	7289.00	7289	95	22	6980	192
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	1700.00	1700	86	1	1594	19
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	1183.00	1183	9	2	1166	6
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	899.00	899	2	4	874	19
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	631.00	631	184	0	423	24
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	177.00	177	44	0	133	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	174.00	174	15	0	158	1
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	139.00	139	3	0	135	1
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	109.00	109	2	0	107	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	97.00	97	1	1	92	3
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	75.00	75	28	0	44	3
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	66.00	66	0	0	66	0
...................................................................................................TTCATCGGGCCATTCGCTA..........................................................................................................................................................	19	1	66.00	66	5	0	54	7
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	57.00	57	0	0	56	1
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	43.00	43	7	0	35	1
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	40.00	40	1	0	38	1
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	34.00	34	6	0	28	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	31.00	31	1	0	30	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	31.00	31	0	0	31	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	27.00	27	0	0	27	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	27.00	27	2	0	24	1
.................................................................................................................................................................TATCACAGTGATTTTCCT.............................................................................................	18	1	26.00	26	0	0	25	1
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	23.00	23	2	0	21	0
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	22.00	22	0	0	22	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	16.00	16	0	1	15	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	13.00	13	0	0	13	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	10.00	10	0	0	10	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATA.....................................................................................................................................	23	1	10.00	10	0	0	10	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	8.00	8	0	0	8	0
.......................................................................................................................AAGGAACGATCGTTGTGATA.....................................................................................................................................	20	1	7.00	7	1	0	6	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	6.00	6	0	0	6	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	6.00	6	4	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAA.................................................................................................................................	25	1	5.00	5	0	0	5	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	5.00	5	0	0	5	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	4.00	4	3	0	1	0
.........................................................................................A---------TTCATCGGGCCATTCGCTA..........................................................................................................................................................	20	1	4.00	4	0	0	4	0
..........................................................................................................................GAACGATCGTTGTGATATG...................................................................................................................................	19	1	4.00	4	0	0	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	3.00	3	0	0	3	0
..........................................................................................................................GAACGATCGTTGTGATAT....................................................................................................................................	18	1	3.00	3	0	0	3	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	3.00	3	0	0	3	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	3.00	3	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	3.00	3	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGGT.................................................................................................................................	25	1	2.00	2	0	0	2	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	2.00	2	1	0	1	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATAT....................................................................................................................................	24	1	2.00	2	0	0	1	1
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	2.00	2	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTA.................................................................................................................................	25	1	2.00	2	0	0	2	0
.....................................................................................................................AAAAGGAACGATCGTTGTGAT......................................................................................................................................	21	1	2.00	2	0	0	2	0
....................................................................................................................TAAAAGGAACGATCGTTGTGA.......................................................................................................................................	21	1	2.00	2	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATAG....................................................................................................................................	22	1	2.00	2	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	2.00	2	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAT.................................................................................................................................	25	1	2.00	2	0	0	1	1
......................................................................................................................AAAGGAACGATCGTTGTGATATTTT.................................................................................................................................	25	1	1.00	1	0	0	1	0
..................................................................................................................................................................ATCACAGTGATTTTCCTT............................................................................................	18	1	1.00	1	0	0	1	0
.......................................................................................AAA---------TTCATCGGGCCATTCGCTA..........................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTTC.......................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAG.......................................................................................	23	1	1.00	1	0	0	1	0
.......................................................................................................................................................................AGTGATTTTCCTTTATAA.......................................................................................	18	1	1.00	1	0	0	1	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTATA.........................................................................................	22	2	1.00	2	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATACT...................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................................................................CTAAAAGGAACGATCGTTGTGAT......................................................................................................................................	23	1	1.00	1	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTT..................................................................................................................................	24	1	1.00	1	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGT.......................................................................................................................................	19	1	1.00	1	0	0	1	0

droYak3

CAT----TACG------GGTCAAGAAAT-----------------------CGA-----G-----TTAAGT---GTTCC------CCCAA---------TTTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----ACAAAGTCCACAAC-TCATC-AA-GGGAAA--------TGAAAGCCAAAGTCGGCA-T----------------CT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	203258.00	203258	28	64	192691	10435	7	26	5	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	76864.00	76864	28	31	73957	2786	4	25	9	5	1	18	0
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	10780.00	10780	21	5	10411	336	1	1	0	1	0	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	5615.00	5615	0	0	5611	4	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	3667.00	3667	0	32	1912	1723	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	3427.00	3427	0	13	1986	1428	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	2567.00	2567	36	2	2330	194	0	1	3	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	1430.00	1430	0	0	1370	60	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	1377.00	1377	2	0	1346	28	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	748.00	748	0	0	729	18	0	1	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	505.00	505	0	1	327	177	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	481.00	481	0	3	367	111	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	426.00	426	0	0	407	19	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	396.00	396	4	0	392	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	325.00	325	0	0	311	14	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	246.00	246	0	0	235	11	0	0	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	193.00	193	0	7	185	1	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	153.00	153	4	0	139	9	0	0	0	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	116.00	116	0	0	113	3	0	0	0	0	0	0	0
...................................................................................................TTTAACGGGCCGTTCGCTA..........................................................................................................................................................	19	1	94.00	94	0	0	56	38	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	90.00	90	0	3	67	20	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	73.00	73	0	1	36	36	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	71.00	71	0	0	67	4	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	67.00	67	0	0	65	2	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	59.00	59	0	0	9	50	0	0	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	53.00	53	0	3	50	0	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	49.00	49	0	0	49	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	47.00	47	0	0	44	3	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	32.00	32	0	0	31	1	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAC.........................................................................................	21	1	30.00	30	0	0	30	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	24.00	24	0	0	2	22	0	0	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	20.00	20	0	1	5	14	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	20.00	20	0	1	10	9	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	20.00	20	0	0	20	0	0	0	0	0	0	0	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	17.00	17	0	0	17	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	14.00	14	0	1	12	1	0	0	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	14.00	14	0	0	14	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	13.00	13	0	0	10	3	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	13.00	13	0	0	11	2	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATC.....................................................................................................................................	21	1	12.00	12	0	0	9	3	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	12.00	12	0	0	11	1	0	0	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATAC....................................................................................................................................	21	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTT..................................................................................................................................	24	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAT.................................................................................................................................	25	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0

droEre2

CAAA-----------------------T-----------------------CCA-----G-----TTAAGT---GATCC------CCTAA---------TTTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----AAAAAGTCCAAAAC-TCATC-AATGGGAAA--------TGAAAGCCAAAGTTGCCA-G--CT------------TA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	6818.00	6818	1151	2632	2	3003	8	16	6
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	3303.00	3303	361	1704	0	1233	1	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	2638.00	2638	300	1366	1	954	9	8	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	2516.00	2516	512	1457	0	545	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	465.00	465	28	261	0	174	1	1	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	324.00	324	48	152	0	123	0	1	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	229.00	229	52	143	0	34	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	229.00	229	4	74	0	145	2	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	194.00	194	8	28	0	158	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	112.00	112	1	108	0	3	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	109.00	109	107	1	0	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	103.00	103	0	99	0	4	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	66.00	66	15	34	0	17	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	65.00	65	10	32	0	23	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	55.00	55	3	42	0	9	1	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	43.00	43	4	14	0	25	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	37.00	37	1	8	0	28	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	34.00	34	31	2	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	30.00	30	6	16	0	8	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	19.00	19	0	12	0	7	0	0	0
...................................................................................................TTTGACGGGCCGTTCGCTA..........................................................................................................................................................	19	1	17.00	17	4	0	0	13	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	16.00	16	0	1	0	15	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	13.00	13	0	6	0	6	0	1	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAC.........................................................................................	21	1	11.00	11	0	11	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	10.00	10	3	4	0	3	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	10.00	10	1	3	0	6	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	10.00	10	0	9	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	9.00	9	2	0	0	7	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	8.00	8	2	2	0	4	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	7.00	7	0	7	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.......................................................................................	24	1	6.00	6	0	6	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	6.00	6	1	1	0	4	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	6.00	6	0	5	0	1	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	5.00	5	0	2	0	3	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	4.00	4	0	1	0	2	1	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACT...................................................................................................................................	23	1	4.00	4	0	1	0	3	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	4.00	4	0	1	0	2	0	1	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATG........................................................................................	23	1	4.00	4	1	2	0	1	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	4.00	4	3	1	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	3.00	3	0	2	0	1	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATT........................................................................................	22	1	3.00	3	0	1	0	2	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTATA........................................................................................	20	1	3.00	3	1	2	0	0	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTAT.........................................................................................	19	1	3.00	3	1	1	0	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATC........................................................................................	23	1	3.00	3	0	1	0	2	0	0	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	2.00	2	0	0	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	2.00	2	0	1	0	1	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGAT......................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTA..................................................................................................................................	24	1	2.00	2	0	0	0	2	0	0	0
..........................................................................................................................GAACGATCGTTGTGATATG...................................................................................................................................	19	1	2.00	2	1	0	0	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA......................................................................................	25	1	2.00	2	0	1	0	1	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	2.00	2	1	0	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCT.............................................................................................	18	1	2.00	2	0	0	0	1	0	1	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAAT...................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0

dp5

CCAGTGT-------------CA-------------------------------------------TTGATTA--GTTCC------CAACT---------TCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGC-CACAC-AT-GGGAAA--------CGAAAC-----G----------CTCAG---CGGTGGAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	20861.00	20861	2	2642	10780	28	7312	4	2	3	80	8
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	11323.00	11323	0	419	7858	4	3041	0	0	0	1	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	10758.00	10758	0	418	8461	4	1872	0	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	7060.00	7060	1	708	4499	20	1796	0	5	0	23	8
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	1461.00	1461	0	92	884	0	454	0	0	0	29	2
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	783.00	783	0	55	589	1	138	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	780.00	780	0	0	777	0	3	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	762.00	762	0	41	524	0	196	0	0	0	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	640.00	640	0	1	634	2	3	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	598.00	598	2	26	274	0	265	1	7	0	14	9
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	570.00	570	0	89	383	1	95	0	0	0	2	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	268.00	268	0	236	25	0	3	0	0	0	4	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	260.00	260	0	16	158	0	85	0	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	224.00	224	1	10	123	1	88	0	0	0	1	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	202.00	202	0	14	153	1	32	0	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	139.00	139	0	0	122	0	17	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	113.00	113	0	17	70	0	25	0	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	107.00	107	0	1	80	0	18	0	1	0	7	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	82.00	82	0	76	5	0	1	0	0	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	78.00	78	0	2	43	0	33	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	64.00	64	0	0	64	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	60.00	60	0	2	8	0	50	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAC.........................................................................................	21	1	60.00	60	0	0	59	0	1	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	59.00	59	0	5	41	0	13	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	42.00	42	0	2	21	0	13	0	0	0	3	3
...................................................................................................TCCTAGGGGCCATACGCTA..........................................................................................................................................................	19	1	40.00	40	0	4	4	0	32	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	38.00	38	0	0	2	0	36	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.......................................................................................	24	1	37.00	37	0	0	37	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	36.00	36	0	0	21	0	15	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	35.00	35	0	4	16	0	15	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	31.00	31	0	2	17	0	12	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	30.00	30	0	23	7	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	29.00	29	0	2	18	0	9	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	28.00	28	0	3	17	0	8	0	0	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATA.....................................................................................................................................	23	1	26.00	26	0	2	11	0	13	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	26.00	26	0	0	4	0	22	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	24.00	24	0	2	11	0	11	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	21.00	21	0	0	18	0	3	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	17.00	17	0	4	13	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATC........................................................................................	23	1	15.00	15	0	1	10	1	3	0	0	0	0	0
.........................................................................................T---------TCCTAGGGGCCATACGCTA..........................................................................................................................................................	20	1	15.00	15	0	0	1	0	14	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATA.....................................................................................................................................	20	1	14.00	14	0	11	3	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	14.00	14	0	0	4	0	8	0	0	0	2	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	12.00	12	0	1	5	0	3	0	0	0	3	0
.......................................................................................................................AAGGAACGATCGTTGTGATATGT..................................................................................................................................	23	1	11.00	11	0	9	2	0	0	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	10.00	10	0	8	2	0	0	0	0	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGAC......................................................................................................................................	22	1	10.00	10	0	0	10	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	10.00	10	0	1	6	0	3	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGATAT....................................................................................................................................	23	1	9.00	9	0	4	5	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	9.00	9	0	0	7	0	2	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA......................................................................................	25	1	9.00	9	0	2	7	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAGC......................................................................................	23	1	8.00	8	0	0	5	0	3	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCT.............................................................................................	18	1	8.00	8	0	0	3	0	5	0	0	0	0	0
...........................................................................................................................................TGCGTTA-ATTC-ACCGTTACATA.............................................................................................................	22	1	7.00	7	0	0	3	0	4	0	0	0	0	0
......................................................................................................................................................................CAGTGATTTTCCTTTATA........................................................................................	18	1	7.00	7	0	0	6	0	1	0	0	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTAT.........................................................................................	19	1	7.00	7	0	3	0	0	4	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATG........................................................................................	23	1	7.00	7	0	0	5	0	2	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	6.00	6	0	1	1	0	4	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	6.00	6	0	4	2	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAA.........................................................................................	22	1	6.00	6	0	0	4	0	2	0	0	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTATA........................................................................................	20	1	6.00	6	0	0	5	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	5.00	5	0	0	4	0	1	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTC.................................................................................................................................	25	1	5.00	5	0	1	2	0	1	0	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	5.00	5	0	1	4	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTT..................................................................................................................................	24	1	5.00	5	0	0	2	0	3	0	0	0	0	0

droPer2

CAACCACACCC------ACACCAACACCAACACCCATACCCACCCTCACATCCATCCCAGTGTCATTGATTA--GCTCC------CAACT---------TCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAGC-CACAC-AT-GGGAAA--------CGAAAC-----A----------CTCAG---CGATGGAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	7491.00	7491	6969	35	408	2	66	11
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	6462.00	6462	4645	68	1645	2	85	17
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	6180.00	6180	6099	3	71	1	3	3
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	3284.00	3284	3195	1	61	3	2	22
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	721.00	721	22	47	648	1	2	1
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	371.00	371	347	4	18	0	2	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	353.00	353	6	41	306	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	164.00	164	160	0	3	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	161.00	161	155	0	6	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	125.00	125	116	0	8	0	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	70.00	70	68	1	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	67.00	67	67	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	63.00	63	63	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	58.00	58	42	0	13	0	1	2
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	51.00	51	50	0	1	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	46.00	46	3	3	40	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATA.....................................................................................................................................	23	1	42.00	42	37	0	4	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	39.00	39	36	0	2	0	1	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	27.00	27	0	5	22	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	27.00	27	21	4	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	24.00	24	24	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	23.00	23	23	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	21.00	21	15	0	5	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGG.......................................................................................................................................	19	1	20.00	20	20	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAG....................................................................................................................................	22	1	20.00	20	20	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	16.00	16	4	4	8	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	16.00	16	15	0	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	15.00	15	0	0	15	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	11.00	11	0	3	7	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGAG......................................................................................................................................	20	1	11.00	11	11	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	10.00	10	9	0	1	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATAT....................................................................................................................................	20	1	9.00	9	9	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	9.00	9	8	0	1	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	9.00	9	0	0	9	0	0	0
..........................................................................................................................GAACGATCGTTGTGATAT....................................................................................................................................	18	1	9.00	9	9	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	8.00	8	0	2	6	0	0	0
........................................................................................................................AGGAACGATCGTTGTGAT......................................................................................................................................	18	1	8.00	8	8	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	8.00	8	8	0	0	0	0	0
...................................................................................................TCCTAGGGGCCATACGCTA..........................................................................................................................................................	19	1	7.00	7	0	0	7	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	6.00	6	3	3	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	6.00	6	0	0	6	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATA.....................................................................................................................................	20	1	6.00	6	6	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGATAT....................................................................................................................................	23	1	6.00	6	5	0	1	0	0	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	5.00	5	4	1	0	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATAA....................................................................................................................................	24	1	5.00	5	5	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGAT......................................................................................................................................	21	1	5.00	5	5	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATAT....................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGATA.....................................................................................................................................	22	1	4.00	4	3	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	3.00	3	2	0	0	0	0	1
........................................................................................................................AGGAACGATCGTTGTGATA.....................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGA.......................................................................................................................................	21	1	3.00	3	2	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATAA..................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	2.00	2	0	0	2	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	2.00	2	0	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAAA................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATGG..................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAT.......................................................................................	22	1	2.00	2	0	0	2	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATA.....................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAG.......................................................................................	24	1	2.00	2	0	1	1	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	2.00	2	0	1	1	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATC...................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	2.00	2	0	1	1	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	2.00	2	0	0	2	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAT.................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACT...................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGAT......................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTT...........................................................................................	19	1	1.00	1	0	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATC.....................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droWil2

CAA--------------------------------------------------------G-----TT---T---CATCG------TCGTTT--------TTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTC-ACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTT--CTGTCCAATATATCAAC-A----A-----------TATCCAGCAAAGTTTTCA-A------------G--TGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	51810.00	51810	38	332	3	51336	101
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	23023.00	23023	56	158	7	22698	104
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	11546.00	11546	0	196	0	11308	42
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	4116.00	4116	0	115	0	3991	10
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	2328.00	2328	41	10	0	2264	13
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	1803.00	1803	88	6	8	1665	36
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	1381.00	1381	0	30	0	1346	5
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	408.00	408	0	16	0	391	1
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	351.00	351	1	0	1	349	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	283.00	283	0	10	0	273	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	276.00	276	1	6	0	269	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	275.00	275	0	5	0	270	0
...................................................................................................TTTTCTGGGCCATTCGCTA..........................................................................................................................................................	19	1	181.00	181	0	4	0	177	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	140.00	140	0	1	0	139	0
.................................................................................................................................................................TATCACAGTGATTTTCCT.............................................................................................	18	1	117.00	117	0	0	0	116	1
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	82.00	82	1	1	0	80	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	79.00	79	0	37	0	42	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	75.00	75	0	2	0	72	1
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	62.00	62	0	1	0	61	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	49.00	49	1	0	0	48	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	48.00	48	0	0	0	48	0
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	47.00	47	0	0	1	46	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	46.00	46	0	1	0	45	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	44.00	44	0	1	0	43	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	31.00	31	0	15	0	15	1
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	30.00	30	0	0	0	30	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	27.00	27	0	0	0	27	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	26.00	26	0	0	0	26	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	24.00	24	0	0	0	24	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	22.00	22	0	1	0	21	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	20.00	20	0	2	0	18	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA......................................................................................	25	1	19.00	19	0	0	0	19	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	14.00	14	0	0	0	14	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	14.00	14	0	0	0	14	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	13.00	13	0	1	0	12	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	13.00	13	0	0	0	13	0
..........................................................................................T--------TTTTCTGGGCCATTCGCTA..........................................................................................................................................................	20	1	13.00	13	0	0	0	13	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAA.................................................................................................................................	25	1	12.00	12	0	0	0	12	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAT.......................................................................................	22	1	12.00	12	0	0	0	12	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	11.00	11	0	0	0	11	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	10.00	10	0	5	0	5	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTT..........................................................................................	21	1	10.00	10	0	0	0	10	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	9.00	9	0	0	0	9	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTT...........................................................................................	19	1	8.00	8	0	0	0	8	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	7.00	7	0	0	0	7	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	6.00	6	0	0	0	6	0
.............................................................................................................................................CGTTAGATTC-ACCGTTATA...............................................................................................................	19	1	6.00	6	0	0	0	6	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	6.00	6	0	0	0	6	0
...........................................................................................................................AACGATCGTTGTGATATG...................................................................................................................................	18	1	5.00	5	0	1	0	4	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAG.......................................................................................	24	1	5.00	5	0	0	0	5	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	5.00	5	2	0	0	2	1
......................................................................................................................................................................CAGTGATTTTCCTTTATA........................................................................................	18	1	5.00	5	0	0	0	5	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAA.........................................................................................	22	1	5.00	5	0	2	0	3	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTAT..........................................................................................	21	1	5.00	5	0	1	0	4	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAT.......................................................................................	23	1	4.00	4	0	0	0	4	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	4.00	4	0	0	0	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTA.................................................................................................................................	25	1	4.00	4	0	0	0	4	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTC.................................................................................................................................	25	1	4.00	4	0	0	0	4	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATA.....................................................................................................................................	23	1	3.00	3	0	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTT........................................................................................................................................	18	1	3.00	3	0	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGT.......................................................................................................................................	19	1	3.00	3	0	0	0	3	0
.........................................................................................TT--------TTTTCTGGGCCATTCGCTA..........................................................................................................................................................	21	1	3.00	3	0	0	0	3	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATG........................................................................................	23	1	3.00	3	0	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATTG....................................................................................................................................	22	1	3.00	3	0	0	0	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATC.....................................................................................................................................	21	1	3.00	3	1	0	0	2	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	2.00	2	1	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATAA..................................................................................................................................	24	1	2.00	2	0	0	0	2	0

droVir3

AATCT--GACC------A-----TATAT-----------------------ATA-----T-----CTG-----ATATTC------TCGTATACTATATATAAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTA-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC--------AGCCCGTAAA-GCAAC-AC-CACA----------TACGATCTATA--TCCATGTC-T-------ATATAGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	66177.00	66177	29	70	12	13801	3	6	0	1	2	1	1	2	20	291	0	1	0	4	0	2	5	1	2	4	1	0	4	3	2	9	2	6	416	7	541	1536	1882	1570	4	3	10	10	270	4298	2909	3945	2967	2449	4503	2170	3587	1971	1171	1445	1064	9	12	0	2989	3220	47	6	4	0	2	410	431	2426	15	5	9	14	7	6	1861	585	499	280	327
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	11567.00	11567	32	56	5	3522	3	5	0	0	1	2	0	1	1	14	3	1	0	4	0	2	4	6	4	3	0	2	3	1	4	1	1	9	60	4	107	196	302	192	1	1	3	4	13	197	128	336	238	266	422	297	573	402	318	346	259	1	1	0	1269	500	21	11	0	1	0	103	123	324	3	2	5	1	2	5	298	162	163	89	128
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	6493.00	6493	23	34	1	737	0	1	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	1	0	0	1	1	0	0	0	1	0	6	1	12	20	17	22	0	0	1	6	37	425	294	397	326	300	494	276	517	346	230	281	192	2	1	0	907	71	2	0	0	0	0	30	24	132	7	3	2	4	2	3	131	41	34	39	53
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	4656.00	4656	11	35	2	149	0	0	0	3	0	6	2	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	2	2	2	0	1	5	21	29	28	24	98	81	91	163	208	331	368	207	306	244	17	13	2	1834	66	1	3	0	0	0	16	15	19	0	0	1	1	1	2	17	48	39	66	71
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	2561.00	2561	0	0	5	922	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	2	0	0	1	0	0	1	1	1	1	84	0	112	247	407	252	0	0	0	0	2	24	8	20	26	20	30	16	29	12	12	11	6	0	0	0	22	209	0	0	0	0	1	5	3	20	0	0	0	0	0	0	15	11	12	3	1
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	2463.00	2463	0	2	9	1029	0	0	0	0	0	0	0	0	0	1	7	3	2	5	5	1	1	4	1	1	4	0	1	0	3	1	1	5	44	2	78	187	147	88	0	0	0	0	1	14	8	17	20	13	29	21	45	24	17	26	17	0	0	0	121	234	1	0	0	0	15	10	13	34	0	0	0	0	0	0	35	53	42	10	11
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	1002.00	1002	1	1	0	254	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	11	14	5	0	0	2	0	0	19	12	33	35	37	61	44	80	51	34	38	36	0	0	0	122	18	0	0	0	0	0	4	9	11	0	0	0	2	2	0	14	11	18	8	10
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	460.00	460	0	0	0	113	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	7	2	0	0	0	0	0	8	10	10	17	11	31	0	23	7	6	8	6	0	0	0	12	166	0	0	0	0	0	4	1	4	0	0	0	0	0	0	4	3	2	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGAT......................................................................................................................................	22	1	295.00	295	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	2	16	7	10	25	14	32	28	15	25	22	0	0	0	76	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	282.00	282	0	0	0	279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	257.00	257	2	0	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	1	3	6	1	0	0	0	0	0	5	1	10	10	6	18	3	14	12	4	8	8	0	0	0	24	6	0	0	0	0	0	5	4	13	0	0	0	0	0	0	7	5	9	4	6
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	173.00	173	0	0	1	86	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	24	7	9	0	0	0	0	0	1	0	0	1	1	0	2	1	2	4	1	0	0	0	0	4	12	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	1	1	1	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	164.00	164	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	11	0	17	25	29	16	0	0	0	0	0	3	0	1	1	1	1	2	2	0	1	1	1	0	0	0	3	7	0	0	0	0	0	2	0	5	0	0	0	0	0	0	0	7	5	1	3
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	129.00	129	0	0	0	46	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	5	11	17	19	0	0	0	0	0	2	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	5	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATC........................................................................................	23	1	129.00	129	0	0	0	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	3	3	7	3	2	4	3	0	0	0	25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	127.00	127	0	1	0	32	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	2	0	0	0	0	0	5	1	6	4	5	5	3	11	4	1	2	2	0	0	0	19	16	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	105.00	105	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	1	4	14	10	6	2	4	6	1	7	3	1	4	0	0	0	0	2	3	0	0	0	0	0	0	0	8	0	0	0	0	0	0	6	2	2	1	1
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	97.00	97	0	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	2	1	3	2	0	0	0	0	0	6	5	5	0	3	2	0	3	4	4	1	1	0	0	0	2	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	78.00	78	0	2	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	1	0	4	6	6	2	1	5	2	3	3	5	4	3	1	0	0	13	4	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	77.00	77	0	2	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	5	2	0	0	0	0	0	2	2	5	2	4	11	1	1	2	2	1	1	0	0	0	7	3	0	2	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	75.00	75	0	0	0	57	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	2	1	1	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	57.00	57	0	0	0	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGATATG...................................................................................................................................	24	1	45.00	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	8	1	13	1	5	2	2	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	40.00	40	0	0	0	15	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	3	2	0	0	0	0	0	0	0	2	1	0	2	2	0	0	2	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	38.00	38	1	2	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	34.00	34	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	2	2	3	3	3	2	1	1	3	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
....................................................................................................................TAAAAGGAACGATCGTTGTGATA.....................................................................................................................................	23	1	31.00	31	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	2	1	0	1	3	0	2	1	0	0	0	0	1	1	0	0	0	0	0	0	0	8	0	0	0	0	0	0	2	1	1	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTC.................................................................................................................................	25	1	28.00	28	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	2	2	3	1	1	0	0	0	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	25.00	25	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATC.....................................................................................................................................	21	1	22.00	22	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	2	0	2	0	0	1	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	17.00	17	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	16.00	16	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	16.00	16	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	2	3	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.......................................................................................	24	1	13.00	13	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAT.................................................................................................................................	25	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	2	1	2	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTCC................................................................................................................................	26	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	1	1	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA......................................................................................	25	1	12.00	12	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATCC.......................................................................................	24	1	12.00	12	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGG.......................................................................................................................................	19	1	11.00	11	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	2	0	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAC.........................................................................................	21	1	11.00	11	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	10.00	10	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1
......................................................................................................................AAAGGAACGATCGTTG..........................................................................................................................................	16	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	1	0	0	0	0	1	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATA.....................................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	3	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	0	1	0	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	9.00	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
...................................................................................................TAAATTGGGTCATGCTCTA..........................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	8.00	8	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGAT......................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGAA.................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	8.00	8	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTG........................................................................................................................................	18	1	8.00	8	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGAT......................................................................................................................................	18	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1
.....................................................................................................................AAAAGGAACGATCGTTGTGATA.....................................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	7.00	7	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	7.00	7	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CGTTC-ATTA-ACCGTTACA...............................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AAAAGGAACGATCGTTGTGATAT....................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	6.00	6	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATC........................................................................................	22	1	6.00	6	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GAACGATCGTTGTGATATG...................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0
......................................................................................................................AAAGGAACGATCGTTGTGATATTT..................................................................................................................................	24	1	5.00	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATG.....................................................................................................................................	21	1	5.00	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................AGGAACGATCGTTGTGATATGT..................................................................................................................................	22	1	5.00	5	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................GGAACGATCGTTGTGATATG...................................................................................................................................	20	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................CACAGTGATTTTCCTTTATA........................................................................................	20	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTTC................................................................................................................................	26	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATATACATCTATGAAAAG-TTTTTATG-----------------------A---------------AAGT-----TCAAAATGCAAACT----CG---ATGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATCG-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----AG-TCCCCCA-GAC-T--ACAAT-ATGAAT--------GTGAAT-----A----------TTTAT---AAG-TGTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	1	103385.00	103385	20	8896	6	8	94444	11
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	1	63878.00	63878	23	4805	2	1	59046	1
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	1	62994.00	62994	6	2770	3	1	60204	10
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	1	57007.00	57007	6	2091	0	0	54910	0
......................................................................................................................AAAGGAACGATCGTTGTGATA.....................................................................................................................................	21	1	7688.00	7688	0	376	0	1	7311	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAT.........................................................................................	21	1	5487.00	5487	1	290	0	0	5196	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATA........................................................................................	22	1	4838.00	4838	0	106	0	0	4732	0
......................................................................................................................AAAGGAACGATCGTTGTGATAC....................................................................................................................................	22	1	4143.00	4143	0	3	0	0	4140	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAC.........................................................................................	22	1	3555.00	3555	0	10	0	0	3545	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATC........................................................................................	23	1	1942.00	1942	2	24	0	0	1916	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	1	1743.00	1743	0	81	0	0	1662	0
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	1	1261.00	1261	2	227	0	2	1022	8
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	1	1095.00	1095	1	30	0	0	1064	0
......................................................................................................................AAAGGAACGATCGTTGTGATATT...................................................................................................................................	23	1	1093.00	1093	0	81	1	0	1011	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAA.......................................................................................	24	1	1051.00	1051	1	108	0	0	942	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGC..................................................................................................................................	24	1	829.00	829	0	97	0	0	728	4
......................................................................................................................AAAGGAACGATCGTTGTGATATGA..................................................................................................................................	24	1	578.00	578	0	38	1	0	539	0
......................................................................................................................AAAGGAACGATCGTTGTGATATC...................................................................................................................................	23	1	468.00	468	0	29	0	0	439	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTAC.........................................................................................	21	1	292.00	292	0	0	0	0	292	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATA........................................................................................	21	1	260.00	260	0	11	0	0	249	0
.......................................................................................................................AAGGAACGATCGTTGTGATATG...................................................................................................................................	22	1	256.00	256	1	4	0	0	251	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAT.......................................................................................	24	1	188.00	188	0	27	0	0	161	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATT........................................................................................	23	1	177.00	177	0	5	0	0	172	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAC.......................................................................................	24	1	173.00	173	0	1	0	0	172	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTAT.........................................................................................	20	1	173.00	173	0	16	0	0	157	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATC........................................................................................	22	1	160.00	160	1	0	0	0	159	0
.......................................................................................................................AAGGAACGATCGTTGTGATAT....................................................................................................................................	21	1	142.00	142	0	0	0	0	142	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTAT.........................................................................................	18	1	132.00	132	0	57	0	0	75	0
......................................................................................................................AAAGGAACGATCGTTGTGATATA...................................................................................................................................	23	1	130.00	130	0	13	0	0	117	0
......................................................................................................................AAAGGAACGATCGTTGTGAC......................................................................................................................................	20	1	130.00	130	0	0	0	0	130	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTC.................................................................................................................................	25	1	113.00	113	1	32	0	0	80	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAA.......................................................................................	23	1	110.00	110	0	5	0	0	105	0
....................................................................................................................................................................CACAGTGATTTTCCTTTAT.........................................................................................	19	1	108.00	108	0	1	0	0	107	0
....................................................................................................................................................................CACAGTGATTTTCCTTTATA........................................................................................	20	1	103.00	103	0	0	0	0	103	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTT...........................................................................................	20	1	101.00	101	3	40	0	0	58	0
.....................................................................................................................................................................ACAGTGATTTTCCTTTATA........................................................................................	19	1	95.00	95	0	27	0	0	68	0
......................................................................................................................AAAGGAACGATCGTTGTGA.......................................................................................................................................	19	1	81.00	81	0	2	1	0	78	0
......................................................................................................................................................................CAGTGATTTTCCTTTATA........................................................................................	18	1	79.00	79	0	0	0	0	79	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTA..........................................................................................	20	1	79.00	79	0	3	0	0	76	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATG........................................................................................	23	1	53.00	53	0	1	0	0	52	0
...................................................................................................................................................................TCACAGTGATTTTCCTTTATAA.......................................................................................	22	1	52.00	52	0	3	0	0	49	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGTT.................................................................................................................................	25	1	47.00	47	0	26	0	0	21	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA......................................................................................	25	1	45.00	45	0	3	0	0	42	0
......................................................................................................................AAAGGAACGATCGTTGTGATAA....................................................................................................................................	22	1	40.00	40	0	1	0	0	39	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATCC.......................................................................................	24	1	36.00	36	0	0	0	0	36	0
........................................................................................................................AGGAACGATCGTTGTGATATG...................................................................................................................................	21	1	33.00	33	1	0	0	0	32	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATT........................................................................................	22	1	30.00	30	0	0	0	0	30	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAC.......................................................................................	23	1	29.00	29	0	0	0	0	29	0
..................................................................................................................................................................ATCACAGTGATTTTCCTTTATAT.......................................................................................	23	1	28.00	28	0	3	0	0	25	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAA.........................................................................................	22	1	28.00	28	0	0	0	0	28	0
......................................................................................................................AAAGGAACGATCGTTGTGATACC...................................................................................................................................	23	1	27.00	27	0	1	0	0	26	0
......................................................................................................................AAAGGAACGATCGTTGTGATATGG..................................................................................................................................	24	1	25.00	25	0	1	0	0	24	0
.................................................................................................................................................................TATCACAGTGATTTTCCTT............................................................................................	19	1	24.00	24	0	1	0	0	23	0
.......................................................................................................................AAGGAACGATCGTTGTGATA.....................................................................................................................................	20	1	21.00	21	0	0	0	0	21	0
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	1	21.00	21	1	1	0	0	19	0
...................................................................................................ATGAATGGGCCATGCGCTA..........................................................................................................................................................	19	1	21.00	21	0	5	0	0	16	0

droGri2

TGTATATAATA------TTCCTGATATA----------------------------------------TGT-GTTAA----------AGT---------CGTTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----T--CTGCCCAAAAC-TCAAC-TA-ACCAGT--GTTGAATAACTAGTG-------------A---------AGAGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................AAAGGAACGATCGTTGTGATATG...................................................................................................................................	23	2	5.00	10	5	5
.................................................................................................................................................................TATCACAGTGATTTTCCTTTAT.........................................................................................	22	2	2.00	4	4	0
.................................................................................................................................................................TATCACAGTGATTTTCCTTTA..........................................................................................	21	2	1.50	3	3	0
......................................................................................................................AAAGGAACGATCGTTGTGATAT....................................................................................................................................	22	2	1.50	3	2	1
.................................................................................................................................................................TATCACAGTGATTTTCCTTTATA........................................................................................	23	2	0.50	1	1	0
......................................................................................................................AAAGGAACGATCGTTGTGAT......................................................................................................................................	20	2	0.50	1	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATT.....................................................................................................................................	21	2	0.50	1	0	1
......................................................................................................................AAAGGAACGATCGTTGTGATATGT..................................................................................................................................	24	2	0.50	1	0	1

dan-mir-5

scaffold_13266:9731682-9731748 +

Known

Unknown

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.2	-24.0	-23.9