ID:

dan-mir-4

 Coordinate:

scaffold_13266:9731523-9731603 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.1 -23.9 -23.9

Flybase annnotation

pre_miRNA [Dana\mir-4-RM]; utr3 [utr3_minus_3617]; miRNA [Dana\miR-4-RA]

No Repeatable elements found

Sense Strand Reads

CTAAAGTGACTTGGAAATGTAAAGTTTCAAATAATATACCAATATAAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTAACAAGAATTTCAAATGTGACTATTCGAAAAAA

***********************************************..((((((((.((((((..((((.(((.(((.((((((..........))).))).))).))).))))..)))))).))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V039

embryo

 M044

female body

 V106

head

 V055

head

 V105

male body
..................................................................................................ATAAAGCTAGACAACCATTGAA............................................................. 22 0 1 2705.00 2705 2271 291 120 7 11 5
..................................................................................................ATAAAGCTAGACAACCATTGA.............................................................. 21 0 1 2622.00 2622 2080 439 79 10 10 4
..................................................................................................ATAAAGCTAGACAACCATTGAAG............................................................ 23 0 1 1441.00 1441 1214 198 19 5 3 2
..................................................................................................ATAAAGCTAGACAACCATTG............................................................... 20 0 1 739.00 739 567 137 27 6 1 1
..................................................................................................AGAAAGCTAGACAACCATTGAA............................................................. 22 1 1 339.00 339 339 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAA............................................................ 23 1 1 313.00 313 265 34 13 0 1 0
..................................................................................................AGAAAGCTAGACAACCATTGA.............................................................. 21 1 1 268.00 268 268 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 184.00 184 182 2 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAG............................................................ 22 0 1 128.00 128 97 22 6 2 0 1
..................................................................................................ATAAAGCTAGACAACCAT................................................................. 18 0 1 125.00 125 125 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................... 24 0 1 81.00 81 72 7 1 1 0 0
..................................................................................................AGAAAGCTAGACAACCATTG............................................................... 20 1 1 67.00 67 67 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAC............................................................ 23 1 1 63.00 63 63 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAT............................................................ 23 1 1 53.00 53 41 10 2 0 0 0
..................................................................................................ATAAAGCTAGACAACCATT................................................................ 19 0 1 42.00 42 31 9 2 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAA............................................................. 21 0 1 41.00 41 22 7 12 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAA............................................................. 22 1 1 40.00 40 40 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGA.............................................................. 21 1 1 40.00 40 40 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 32.00 32 32 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAA............................................................. 23 0 1 32.00 32 31 0 1 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGT.............................................................. 21 1 1 31.00 31 25 6 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................... 23 0 1 29.00 29 24 4 0 0 0 1
..............................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 24 0 1 25.00 25 18 3 4 0 0 0
..................................................................................................ATAAAGCTAGACAACCAC................................................................. 18 1 1 25.00 25 25 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGA.............................................................. 21 2 1 24.00 24 24 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAG............................................................ 23 1 1 24.00 24 24 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAA............................................................. 22 1 1 23.00 23 19 3 0 0 0 1
..................................................................................................AGAAAGCTAGACAACCAT................................................................. 18 1 1 23.00 23 23 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 25 0 1 23.00 23 7 10 4 0 2 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 24 0 1 22.00 22 7 13 1 0 1 0
..................................................................................................ATAAAGCTAGACAACCATTGAC............................................................. 22 1 1 21.00 21 21 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAA............................................................. 22 1 1 21.00 21 19 2 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 21.00 21 21 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGA.............................................................. 22 0 1 21.00 21 20 1 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 19.00 19 18 1 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGA.............................................................. 20 0 1 18.00 18 8 0 9 1 0 0
..................................................................................................AGATAGCTAGACAACCATTGAA............................................................. 22 2 1 17.00 17 17 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGA.............................................................. 21 1 1 16.00 16 14 2 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAA............................................................. 22 1 1 15.00 15 14 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................... 24 2 1 15.00 15 12 0 3 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 23 0 1 14.00 14 7 0 7 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAG............................................................ 23 1 1 13.00 13 12 1 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGA.............................................................. 21 1 1 13.00 13 11 2 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGG................................................................................................. 22 0 1 13.00 13 5 1 7 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 13.00 13 12 0 1 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAG............................................................ 23 2 1 12.00 12 12 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGA.............................................................. 21 1 1 12.00 12 11 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAT............................................................. 22 1 1 12.00 12 11 1 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGA.............................................................. 21 1 1 12.00 12 12 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGC.............................................................. 21 1 1 11.00 11 6 5 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAA............................................................. 22 1 1 11.00 11 11 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAA............................................................. 22 1 1 11.00 11 11 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGA.............................................................. 21 1 1 11.00 11 11 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAA............................................................ 22 1 1 11.00 11 9 1 1 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGA.............................................................. 21 1 1 9.00 9 8 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAT............................................................ 23 2 1 9.00 9 9 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAG............................................................ 23 1 1 9.00 9 9 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACG............................................................ 23 1 1 9.00 9 6 3 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAA............................................................. 22 1 1 9.00 9 8 1 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAG............................................................ 24 0 1 9.00 9 8 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAA............................................................. 22 1 1 8.00 8 8 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGA.............................................................. 21 1 1 8.00 8 8 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................... 24 1 1 8.00 8 7 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................... 24 1 1 8.00 8 7 1 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAA............................................................. 20 0 1 7.00 7 7 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGA.............................................................. 21 2 1 7.00 7 7 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAC............................................................ 23 2 1 7.00 7 7 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTG............................................................... 20 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGA.............................................................. 21 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAA............................................................. 22 1 1 7.00 7 7 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGT................................................................................................ 22 0 1 7.00 7 3 3 1 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGT................................................................................................ 23 0 1 7.00 7 3 2 1 0 1 0
..................................................................................................ATAAAGCTGGACAACCATTGA.............................................................. 21 1 1 7.00 7 2 1 3 0 1 0
..................................................................................................ACAAAGCTAGACAACCATTGAA............................................................. 22 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 7.00 7 6 1 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAG.................................................................................................. 21 0 1 7.00 7 0 3 4 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAG............................................................ 23 1 1 6.00 6 6 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAG............................................................ 22 1 1 6.00 6 6 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGA.............................................................. 21 1 1 6.00 6 6 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGA.............................................................. 21 1 1 6.00 6 2 4 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGA.............................................................. 21 1 1 6.00 6 5 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTT............................................................... 20 1 1 6.00 6 4 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTA.............................................................. 21 1 1 6.00 6 1 5 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAA............................................................ 23 2 1 6.00 6 6 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAAGTT.......................................................... 22 0 1 5.00 5 4 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGT........................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAA............................................................. 22 1 1 5.00 5 4 1 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAA............................................................. 22 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAA............................................................. 22 1 1 5.00 5 4 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATT................................................................ 19 1 1 5.00 5 5 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAG............................................................ 21 0 1 5.00 5 5 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGA.............................................................. 19 0 1 5.00 5 5 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAAGT........................................................... 21 0 1 5.00 5 2 3 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGA.............................................................. 21 2 1 5.00 5 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGA.............................................................. 21 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAG............................................................ 23 1 1 5.00 5 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCA............................................................. 22 1 1 5.00 5 0 5 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTCAA............................................................. 22 1 1 5.00 5 0 5 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAA............................................................ 23 2 1 4.00 4 4 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 4.00 4 4 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAT............................................................. 22 2 1 4.00 4 4 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAAG............................................................ 23 1 1 4.00 4 0 4 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGT.............................................................. 21 2 1 4.00 4 4 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAG............................................................ 22 1 1 4.00 4 4 0 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGA.............................................................. 21 1 1 4.00 4 3 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAA............................................................. 22 1 1 4.00 4 1 3 0 0 0 0
.......................................................................................................GCTAGACAACCATTGAAG............................................................ 18 0 1 4.00 4 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAG............................................................ 23 1 1 4.00 4 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGA.............................................................. 21 2 1 4.00 4 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACAATTGA.............................................................. 21 1 1 4.00 4 2 1 0 0 1 0
.................................................................................................CATAAAGCTAGACAACCATTG............................................................... 21 0 1 4.00 4 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGTA............................................................. 22 1 1 3.00 3 1 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAAG............................................................ 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAA............................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGAA............................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACA............................................................ 23 2 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAG............................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................ATAAAGCTACACAACCATTG............................................................... 20 1 1 3.00 3 0 3 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGA.............................................................. 23 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGAA............................................................. 26 0 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACT............................................................ 23 2 1 3.00 3 1 2 0 0 0 0
...............................................................................................ATCATAAAGCTAGACAACCATTGAA............................................................. 25 0 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAAACAACCATTGAA............................................................. 22 1 1 3.00 3 0 3 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTG............................................................... 20 1 1 3.00 3 1 2 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAT............................................................. 23 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGG.............................................................. 21 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAA............................................................. 22 1 1 3.00 3 1 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAAG............................................................ 23 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTG............................................................... 20 2 2 3.00 6 6 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGA.............................................................. 21 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTG............................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCTTTGAA............................................................. 22 1 1 3.00 3 1 1 0 0 0 1
..................................................................................................ATAAACCTAGACAACCATTGA.............................................................. 21 1 1 3.00 3 0 2 1 0 0 0
..................................................................................................ATAAAGCTCGACAACCATTGA.............................................................. 21 1 1 3.00 3 1 1 1 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGA.............................................................. 21 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................ATAAAGCTCGACCACCATTGAA............................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTCA.............................................................. 21 1 1 3.00 3 0 3 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAA............................................................. 22 1 1 3.00 3 0 3 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAAG............................................................ 23 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGA.............................................................. 21 1 1 3.00 3 3 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGG................................................................................................. 21 0 1 3.00 3 0 0 3 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGA.............................................................. 21 2 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAA............................................................. 22 1 1 2.00 2 0 0 2 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTG............................................................... 20 1 1 2.00 2 1 0 1 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGA.............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAC............................................................ 23 3 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCAT................................................................. 18 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGA.............................................................. 18 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGAAG............................................................ 23 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTTGACAACCATTGAA............................................................. 22 1 1 2.00 2 0 1 1 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAGT........................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCCACACAACCATTGAAG............................................................ 23 2 1 2.00 2 0 2 0 0 0 0
...............................................................CGTTGGTCGTCCAGCCTTAGGT................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAG............................................................ 23 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACAATTGAA............................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTACACAACCATTGA.............................................................. 21 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGA........................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTG............................................................... 20 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAC............................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGG............................................................... 20 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGAA............................................................. 22 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAAG............................................................ 23 1 1 2.00 2 0 1 1 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTG............................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTG............................................................... 19 0 1 2.00 2 0 0 2 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCG............................................................... 20 1 1 2.00 2 0 1 0 0 1 0
..................................................................................................ATAAAGCTAGACAACCATTTCA............................................................. 22 2 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTG............................................................... 20 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTCAA............................................................. 22 2 1 2.00 2 0 2 0 0 0 0
..................................................................................................AGAAAGCTAGACAAACATTGAA............................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAC............................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................AGAATGCTAGACAACCATTGAA............................................................. 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TAAAGCTGGACAACCATTGAAG............................................................ 22 1 1 2.00 2 0 1 0 1 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAAT............................................................ 23 2 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGAAG............................................................ 23 1 1 2.00 2 2 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAA............................................................ 24 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTG............................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTCAAG............................................................ 23 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAA.............................................................. 21 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAATGAA............................................................. 22 1 1 2.00 2 1 1 0 0 0 0
................................................................................................CCATAAAGCTAGACAACCATTGA.............................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAAG............................................................ 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAC............................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGAA............................................................. 22 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGAA............................................................. 22 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTC............................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCAACATTGAAG............................................................ 23 3 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCAG............................................................ 23 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGA.............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAA............................................................ 23 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGA.............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGA.............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTACACAACCACTGA.............................................................. 21 2 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAG............................................................ 23 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGAAG............................................................ 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGACA............................................................ 23 3 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGAA............................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAAG............................................................ 23 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAAA........................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGA.............................................................. 21 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGA.............................................................. 21 1 1 2.00 2 0 2 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCAC................................................................. 18 2 5 1.40 7 7 0 0 0 0 0
..................................................................................................ATAAGGCTGGACAACCATTGAAG............................................................ 23 2 1 1.00 1 0 0 0 1 0 0
..............................................................TCTTTGGTCGTCCAGCCTTA................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................ATAAAGCTCGACAACCATTGAA............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGTCAACCATTGAA............................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..............................................................TCTTTGGTTGTCCAGCCTTAGTTG............................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAACC........................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGAAA............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTTAAGG........................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................CATAAACCTAGACAACCATTGA.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAA............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................CTTTCGTCGTCCAGCCTTAGGTGA.............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..............................................................TCTTTGGTACTCCAGACTTAGGTG............................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GTTCGTTGTGGCAATTGCGGC........................................ 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTTA.............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATT................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TAAAGCGAGACAACCATTGAAGT........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGCA............................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGTG.......................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACTACCATTGTA............................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................CATCATAAAGCTAGACAACCATTGAA............................................................. 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CGTAAAGCTAGACACCCATTGA.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGACG............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..............................................................TCTTTGGTCGTCCATCCTTAGGTT............................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAT............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTACGGTCA.............................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACGACCATTGAA............................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAAT............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGTCAACCATTGTAG............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAT............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAAGCATTGAA............................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGCCAAACATTGAA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTG............................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGGA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATACAGCTAGACAACCATTGAT............................................................. 22 2 1 1.00 1 0 1 0 0 0 0
............................................TAAAGGTTGCAATTAGTTT...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAAA............................................................ 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAAACATTGA.............................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGGAG............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTACA............................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGTTAGACAACCATTGAA............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGA.............................................................. 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGAA............................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................CGATCATAAAGCTAGACAACCATTGAA............................................................. 27 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................AAAGCTGGGCAACCATTGAAG............................................................ 21 2 1 1.00 1 0 0 1 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGTTGA.............................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCGAGACAACCATTGAAG............................................................ 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAT............................................................. 22 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATGGAA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGAGAACCATTGAA............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTTA.............................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTG............................................................... 20 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TAAATCTAGACAACCATTGAAT............................................................ 22 2 1 1.00 1 0 0 0 1 0 0
..................................................................................................ATGAAGCTAGACAACCATTGA.............................................................. 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TAGAGCTAGACAACCATTGAAG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTG............................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTG............................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................ATCTAGCTAGACAACCATTGAA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TAAAGCGAGACAACCATTGAAG............................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAATTC.......................................................... 25 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TTAAAACTAGACAACCATTGAA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................AAAGCTAGACCACCATTGA.............................................................. 19 1 1 1.00 1 1 0 0 0 0 0
...............................................................CTTTTGTCTTCCAGCCTTAGGTGA.............................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTG............................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGGTAGCCCACCATTGAA............................................................. 22 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTG............................................................... 20 1 1 1.00 1 0 0 0 0 1 0
..............................................................TCTTTGGTCGTTCAGCCTTAG.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGACG............................................................ 23 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................... 24 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATCATAAAGCTAGACAACCATTGAG............................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAAACAACCATTCAA............................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCAGTG............................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTG............................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAAG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAAACATTGAA............................................................. 22 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GTTCGTTGTGCCAATTTCGGAG....................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGC.............................................................. 21 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TCCATAAAGCTAGACAACCATTGAA............................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGATG............................................................ 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAAG............................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAC............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGT.............................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGAAGGCTAGACAACCATTGAA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CACAAAGCTAGACAACCATTGAAA............................................................ 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGC........................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAGGTAGACTCCCATTGAA............................................................. 22 3 1 1.00 1 0 1 0 0 0 0
..................................................................................................AGAAAGCTCGACAACCATTGAA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGA.............................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTCA.............................................................. 21 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGAA............................................................. 22 1 1 1.00 1 0 0 0 0 0 1
..................................................................................................TTAAAGCTAGACAACCATTG............................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCACTGA.............................................................. 21 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTTA.............................................................. 21 2 1 1.00 1 0 1 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGAAG............................................................ 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAGC........................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CGTAAAGCTAGACAACCATTGA.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

GATTTCACTGAACCTTTACATTTCAAAGTTTATTATATGGTTATATTTCCAACGTTAATCAAAGAAACCAGCAGGTCGGAATCCACTGAAGAGACTAGTATTTCGATCTGTTGGTAACTTCAAGCAACACCGTTAACGCCGCGAATAATTGTTCTTAAAGTTTACACTGATAAGCTTTTTT

**********************************************..((((((((.((((((..((((.(((.(((.((((((..........))).))).))).))).))))..)))))).))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total V055

head

 V039

embryo

 M044

female body

 V106

head

 V105

male body		 M058

embryo
......................................................................................................................................................GTTCTTAAAGTGTAGACTG............ 19 2 1 1.00 1 0 0 1 0 0 0
................................................................................................AGTATTTCGATCTGTTGGTGTCT.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................ATTCGATCTGTTGGTATCT.............................................................. 19 2 1 1.00 1 0 1 0 0 0 0
................................................................................................AGTATTTCGATCTATTGGTTACT.............................................................. 23 2 2 0.50 1 0 1 0 0 0 0
.......................................................................................................................................................TTCTTAAAGTGTAGACTGTTAA........ 22 3 2 0.50 1 0 0 0 1 0 0
.................................................................................................GTATTTCGATCTATTGGTATCT.............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................GTTCTTAAAGTGGAGACTGAT.......... 21 3 4 0.50 2 0 0 0 0 2 0
..................................................................................................TATTTCGATCTGTTGGTTTCT.............................................................. 21 2 3 0.33 1 1 0 0 0 0 0
................................................................................................AGTATTTCTATCTGTTGGTTTCT.............................................................. 23 3 3 0.33 1 0 1 0 0 0 0
.................................................................................................GTATGTCGATCTATGGGTAACT.............................................................. 22 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................TGTTTCGATCTGTTGGTGCCT.............................................................. 21 3 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................TTCTTAAAGTGGAGACTGATA......... 21 3 4 0.25 1 0 0 1 0 0 0
........................................................................................................................................................TCTTAAAGTGGACACTGTTAA........ 21 3 4 0.25 1 0 0 1 0 0 0
.................................................................................................GTATTTCGACCTGTTGGTTTCT.............................................................. 22 3 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................TTCTTAAAGTGGAGACTGAT.......... 20 3 5 0.20 1 0 0 0 1 0 0
.................................................................................................GTGTTTCGATCTGTTGGTTTCT.............................................................. 22 3 5 0.20 1 0 1 0 0 0 0
..................................................................................................TATGTCGATCTGTTGGTGGCT.............................................................. 21 3 6 0.17 1 1 0 0 0 0 0
........................................................................................................................................................TCTTAAAGTGTAGACTGTTAA........ 21 3 7 0.14 1 0 0 0 1 0 0
..................................................................................................TATTTCGATCTGTTGGTTTAT.............................................................. 21 3 9 0.11 1 0 1 0 0 0 0
......................................................................GCAGATCGGAATCCAGGGA............................................................................................ 19 3 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................................................GGTTCTTAAAGTGTAGACTG............ 20 3 10 0.10 1 0 0 0 0 1 0
..............................................................AGACACCAGCAGGCCGGGA.................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0
........................................................................................................................................................TCTTAAAGTGGAGACTGAT.......... 19 3 18 0.06 1 0 0 1 0 0 0
...................................GATGGTTAAATTTCCAAC................................................................................................................................ 18 2 19 0.05 1 1 0 0 0 0 0
...........................................................AAAAGAAACCACCAGGTC........................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 1
................................................................................................AGTATGGGGATCTGTTGGT.................................................................. 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13266:9731473-9731653 + dan-mir-4 Known_mirbase CTAA-----------AGTGAC----TT--------GGAA-----ATGTAAAGT-T--------------------------------------------TCAA---ATA--ATAT------ACCA-ATATAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCT--TAT---------------------------------------------------------TAACAAGAATT-------TCAAA--TGTGACTATTCGAAAA----------------------AA
droBip1 scf7180000396427:874451-874605 + CTAA-----------A------------------------------GTG---T-T--------------------------------------------TCAA---ATA--GTGT------T----TCTTAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTT--TAT---------------------------------------------------------TTATGAAAATT-------TAAAAAA----TT-----AAA----------------------TAAA
droKik1 scf7180000302679:89199-89369 - TTAG-----------G-----------------------GGATAAAGTGCAGT-TGTA---------------------------ACAAGTT-------------AA-----TATA-----TCCAAACAAGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT---A-------------------------------------------------------------T---GAT------------AT-----TC-----AGGAT--------ATGTCCTAA---ACCA
droFic1 scf7180000454039:847894-848034 - CAAG------------------------------------------GTGAAGT-TACCAGTGAAA-----------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT---A-------------------------------------------------------------C---AA---------------------------------TAAAGTTTAGTGATTC-------
droEle1 scf7180000491201:2013836-2013989 - CCAA------------------------------------------GTGATGTTTTTTAGTGAAA------------------------------G-------------------AGGCAAT----CCCCAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATT--TA-------------------------------------------------------------C---AAG-------------------CCAATACAAAAA----------------------GT
droRho1 scf7180000780066:73767-73914 + CCTA------------------------------------------GTGAAAT-TATTAGTGAAA------------------------------A------------------GAAGACAT----CCAAGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT---A-------------------------------------------------------------C---AAT-------------------TC-----AATAA----------------------AA
droBia1 scf7180000302143:3059669-3059816 - CGAA------------------------------------------GTGAAGT-TAAAGGTGCAA------------------------------G------------------TGGGCCAT----CAAACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-------------------------------------------------------------C---AAG-------------------CC-----ATAAA----------------------TC
droTak1 scf7180000415384:84152-84332 + CTTA------------------------------------------GTGAAGT-TAAA-GTTAAA-----G------------------------TTAATGT-----GA--ATGTAGGCAAT----CTAACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-------------------------------------------------------------C---AAG-------------------CC-----AGTGAATTAAGTTGAGTGATCCCAGCATA
droEug1 scf7180000409474:2396954-2397111 + CTAA------------------------------------------GTGAAA-------GTTAAA----------------------AAGCAAAAATA--AA-----G------------AT----CTAAAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---T-------------------------------------------------------------C---AAG-------------------CC-----AAG--------TTAAGTGTTAC-----CA
dm3 chr2R:15548767-15548916 - dme-mir-4 Known_mirbase CTCA------------------------------------------GTAAAGT-TGCGAGTGAAA------------------------------AT--TAAA---ATATT---------------ATGGAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-------------------------------------------------------------C---GAG-------------------TC-----AAGAA----------------------AT
droSim2 2r:16196038-16196187 - dsi-mir-4 Known_mirbase CTCA------------------------------------------GTGAAGT-TGCAAGTGAAA------------------------------CT--TCAA---ATATT---------------CTGTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-------------------------------------------------------------C---AAG-------------------TC-----AAGAA----------------------AT
droSec2 scaffold_1:13063477-13063645 - dse-mir-4 Known_mirbase CTCA------------------------------------------GTGAAGT-TGCAAGTGAAA------------------------------CT--TCAA---ATATT---------------CTGTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-------------------------------------------------------------C---AAG-------------------TC-----AGGAAATCAAGTTAAGTGATCC---CCAA
droYak3 2R:13623872-13624024 + dya-mir-4 Known_mirbase CTCA------------------------------------------GTGAAGT-TGCAAGTGAAA------------------------------TTAATCA-----GATA---------------CTGGGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATTA-------------------------------------------------------------C---GGG-------------------TC-----AAGAA----------------------AT
droEre2 scaffold_4845:9749005-9749168 - der-mir-4 Known_mirbase CACA----------------------------------------CTGTGAAGT-TGCGAGTGAAA----------------------------A-CAA----A---AGATA---------------CTGTAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC---A-------------------------------------------------------------A---GAG-------------------TT-----AGCAAATCCAGTTAAGTGA---------T
dp5 3:12677338-12677566 - dps-mir-4 Known_mirbase CGAA-----------AGTGACAAAAGTGAAAAAAG----TGACAAA------------------------GTTTGTGTACACTCCACGAGTT-------------GATACC---------------TTATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACACCAACACCCACACCCACCCTCACATCCATCCC--------A---GTG-------------------TC-----ATTGA----------------------TT
droPer2 scaffold_2:8906089-8906291 + dpe-mir-4 Known_mirbase CCAACCAGTGACGGAAGTGACAAAAGTGAAAAAAG----TGACAAA------------------------GTGTGTGTACACTCCACGAGTT-------------GATACC---------------TTATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACAC------------------------------------------------------------------------CAA----------------------CACC
droWil2 scf2_1100000004514:1651560-1651739 - dwi-mir-4 Known_mirbase CAAC-----------A------------------------------ACCAACA-AGCTAGTGAGA--------------------AGAA----------TTAA---C-----TTTA-----ACCAAA--TGGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT-TTAA---------------------------------------------------------GGACATCAATAGCAAAGTTCAAG--TT--T------CATCG----------------------TC
droVir3 scaffold_12875:4112248-4112423 + dvi-mir-4 Known_mirbase CACA-----------AGTTCTCGATTTGATAACCG----TCGCAAT------------------------ATATATATATAT---ATAT-------------ATCTATATC---------------ATATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGC--TAT----------------------------------------------------------------AAT----------------CTGACCA----------------------------TATA
droMoj3 scaffold_6496:20936563-20936775 - dmo-mir-4 Known_mirbase TTCA-----------AT----------------------------TATAAAAT-TTCTAGTGCATGGTTC--------AAACTTAAAAAGAAAA-CAA---AATCTATATC---------------GTATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC--TATATATAATATATATATATACATCTATG-----------------------AAAAGTTTTTATGAAAGT-------------------TC-----AA---------------------------
droGri2 scaffold_15112:2108630-2108806 - dgr-mir-4-1 Known_mirbase GGCATC---------AGTTT------T--------G----------GTTAAAT-GAAAAATGATA------------------------------AA--TCGATCTATATT---------------TTATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGAT--TATATAGTGTA----------------------------------------------------------TA-------TAATATT----CC-----TGA----------------------TATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CTAA-----------AGTGAC----TT--------GGAA-----ATGTAAAGT-T--------------------------------------------TCAA---ATA--ATAT------ACCA-ATATAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCT--TAT---------------------------------------------------------TAACAAGAATT-------TCAAA--TGTGACTATTCGAAAA----------------------AASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2212705.00270512022712911157
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................2112622.00262279208043910410
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2311441.001441191214198325
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................201739.0073927567137116
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................231313.003131326534100
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................221128.0012869722012
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................181125.0012501250000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................24181.00811727001
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................23163.00630630000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................23153.005324110000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19142.00422319000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................21141.004112227000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................23132.00321310000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................21131.00310256000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................23129.00290244010
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................24125.00254183000
........................................................................................................................................................................................ATAAAGCTAGACAACCAC...........................................................................................................................................................18125.00250250000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................25123.00234710200
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................24122.00221713100
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................22121.00210210000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22121.00210201000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20118.0018980001
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................24115.00153120000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................23114.0014770000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................22113.0013751000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22112.00120111000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................21111.0011065000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................22111.0011191000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2419.009081000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2418.008071000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................2418.008071000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................2017.007070000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................2217.007133000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................2317.007132100
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2117.007403000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTT.........................................................................................................................................................2016.006042000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT....................................................................................................................................................2215.005041000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................2115.005050000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................1915.005050000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.....................................................................................................................................................2115.005023000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2314.004040000
.............................................................................................................................................................................................GCTAGACAACCATTGAAG......................................................................................................................................................1814.004040000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................2114.004040000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................2313.003030000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................2213.003021000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA........................................................................................................................................................2313.003030000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2613.003030000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT......................................................................................................................................................2313.003012000
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2513.003030000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................2313.003021000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................2113.003030000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................2113.003300000
...........................................................................................................................................................................................AAGCTAGACAACCATTGA........................................................................................................................................................1812.002020000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTG.........................................................................................................................................................1912.002200000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2412.002020000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTC.........................................................................................................................................................2012.002020000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................2312.002020000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC.....................................................................................................................................................2411.001010000
..............................................................................................................................................................................................................GTTCGTTGTGGCAATTGCGGC..................................................................................................................................2111.001010000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTG....................................................................................................................................................2511.001010000
.................................................................................................................................TAA-AGGTTGCAATTAGTTT................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA........................................................................................................................................................2511.001010000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2411.001010000
..........................................................................................................................................................................................AAAGCTAGACAACCATTG.........................................................................................................................................................1811.001010000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.....................................................................................................................................................2411.001001000
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAG.......................................................................................................................................................2511.001010000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.......................................................................................................................................................2311.001010000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2511.001010000
droBip1
CTAA-----------A------------------------------GTG---T-T--------------------------------------------TCAA---ATA--GTGT------T----TCTTAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTT--TAT---------------------------------------------------------TTATGAAAATT-------TAAAAAA----TT-----AAA----------------------TAAASizeHit CountTotal NormTotal
No Reads
droKik1
TTAG-----------G-----------------------GGATAAAGTGCAGT-TGTA---------------------------ACAAGTT-------------AA-----TATA-----TCCAAACAAGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT---A-------------------------------------------------------------T---GAT------------AT-----TC-----AGGAT--------ATGTCCTAA---ACCASizeHit CountTotal NormTotal
No Reads
droFic1
CAAG------------------------------------------GTGAAGT-TACCAGTGAAA-----------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT---A-------------------------------------------------------------C---AA---------------------------------TAAAGTTTAGTGATTC-------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAA------------------------------------------GTGATGTTTTTTAGTGAAA------------------------------G-------------------AGGCAAT----CCCCAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATT--TA-------------------------------------------------------------C---AAG-------------------CCAATACAAAAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droRho1
CCTA------------------------------------------GTGAAAT-TATTAGTGAAA------------------------------A------------------GAAGACAT----CCAAGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT---A-------------------------------------------------------------C---AAT-------------------TC-----AATAA----------------------AASizeHit CountTotal NormTotal
No Reads
droBia1
CGAA------------------------------------------GTGAAGT-TAAAGGTGCAA------------------------------G------------------TGGGCCAT----CAAACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-------------------------------------------------------------C---AAG-------------------CC-----ATAAA----------------------TCSizeHit CountTotal NormTotal
No Reads
droTak1
CTTA------------------------------------------GTGAAGT-TAAA-GTTAAA-----G------------------------TTAATGT-----GA--ATGTAGGCAAT----CTAACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-------------------------------------------------------------C---AAG-------------------CC-----AGTGAATTAAGTTGAGTGATCCCAGCATASizeHit CountTotal NormTotal
No Reads
droEug1
CTAA------------------------------------------GTGAAA-------GTTAAA----------------------AAGCAAAAATA--AA-----G------------AT----CTAAAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---T-------------------------------------------------------------C---AAG-------------------CC-----AAG--------TTAAGTGTTAC-----CASizeHit CountTotal NormTotal
No Reads
dm3
CTCA------------------------------------------GTAAAGT-TGCGAGTGAAA------------------------------AT--TAAA---ATATT---------------ATGGAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-------------------------------------------------------------C---GAG-------------------TC-----AAGAA----------------------ATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................221305216.0030521600004118186430792000000000000000100000000508020000101933003802000273100000000000000000411402010136556921784026812236227201121337714168011385617251600260012992710008000221201011000000120092946681060554585034310867094000000001004571024008727010505050020001230000140000001860000003601070313231285725732177100305000013892426201014202224011113842024134023035610761824167115244101551013101521865575011016230223282102114311622223362028653216334645252761221120
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21152770.00527700000115437146000000000000200300000000198000001050132000021000011100000000000000000031022834294117721328200031702140218131011110325261901041498127501000001300001000000000053212483704121388111003211430000000010082001008703020720000019031600000000000050001000210362421491116124813900178000018341692111112002012111095040101321202251211110632695443243963147111326519843286230152401112170442711634012712064339932211872013110
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................23119460.001946000000052416600000000000000000000000043010000030300001301000000000000000000000000100076119243529977010001003005110202011015000951005800000000100000000000000015413313249420437121104073000000000000301000100010000000010002000000000000603000000000200012101280164004600004092421110000000200000300000000000301142751054212101132310098671292112024020000010581022002230021042292102020
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................24112143.00121430000107212682000000000000000000000000311101000000000000010001000000000000000000000000278914841981641930001013001002232430102931370003031011660000000000000000000000002179161173423138000000004000000000000020100001200100000000000100000100000000000000000010000020404000000001298200000000001000011000101000101000000000000000000001438500100000000000000401000100000000000010110
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2014710.0047100000100153000000000000000000000000281500000001020000010000030000000000000000000020001941711402000001000001211000007300130402300000000100000000000000061641602416100000000000000000000001000101000100000020100000001000000000000000000000010201031002200006111200000000000010003000000000002100011130001000002043441406101000001000040009020000410004011230015270
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2314653.00465300000051311300000000000000000000000070000000102100002010003000000000000000000000000315761961495700000100000000130200310000493034000000012000000000000000602435061846000110001100000000000120100000000000000000000100000000000000000000000010011002004102210070000864800000000001000105000010000001001100001010001101002194201201012000000020000000000000000025270000220
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................2314128.0041280000002752610000000000000000000000003600000000000000001000000000000000000000000000007152339346467100100000000000100001721200713037000000000000000000000000187811582390440000010000000000000000000001000000000000000000000000000000000000000001000020006090010000023170011000000000000100000000010000000000000000000000218000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................2213620.003620000010416440000000000000000000000001000000000000000000000000000000000000000000000031211291641761000000000003000000115273004810200000000000000000000000002946999451831310000000300000000000000000000000000000000000000000000000000000000000200000100090400010000687900000000001000000000000000000000000012000000000003792600200000000000100001010000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................2213518.0035180000006185200000000000000000000000012000000000200000000000000000000000000000000000035665142127531000000010012200000061110071905400000000100000000000000081391221292121000000000000000000002000000010010000000000010000000000000000000000002000201028021240130000836700000000002000015200000000001001050204021010010001645241010000000000000000010000121000043180011000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................2212231.0022310000001044126000000000000000000000000610000000101000000000000000000000000000000000000505863653121501002000010143001300028170001551504500000000100010000000000078284006100000000000000000000010000000000000000000100100000000000030000000000100000000220132001000069101000000000000000000000000000000000000000000000000035400000000000000000010000000000000010000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2511835.001835000010123370000000000000000000000000500000000010000000000010000000000000000000000004831761043516800020000000010050002818200621018000000000000000000000000321212224081000000000000000000000000000000000000000000000000000000000000000000000000000002030000000043360000000000000000000000000000200000000001000000000173100000000000000000000000000000000050000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................2211331.0013310000003103000000000000000000000000030000000000010001000000000000000000000000000000952354401300000000100000000000200003710200000000010000000000000007113357000000000000000000000000000000000000000000000000000000000000000000000000000000200100600004332000000000000000110000000000000000200320301000000074811000000000100000000001000000000000030000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................2311322.00132200000016200000000000000000000000002030000000100000000000000000000000000000000000094343635700000000000010000000110004203000000000000000000000000149327480300000000000000000000000000000000000000000000000000000000002000000000000000000020000030000231800000000000000000000000000000000000001000000000005066700100000000000000000000000000000010000010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................2211237.001237000000040000000000000000000000000000000000001000010000000000000000000000000000000106195137900000300000000000000000009007000000000000010000000000346917829100000000000000000000000000000000000000000000000000000000000000000000000100000000032008000061500000000000000000000000000001000000001010100000105923400000000000000001000000000000000010100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................2211236.001236000000001100000000000000000000000010000000000000000000000000000000000000000000000229143100000000000000000000000000104000000000000000000000000513371850000000000000000000000100000000000000000000000000000000000000000000000000000000011001000043000000000000000000000000000000000100000000000000010382200001000000000000000000000000000010000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................2111200.00120000000032263000000000000000000000000900000000010000000000031000000000000000000000001824210694270000100000000200010585000524043000000000000000000000000441615000000000000000000000001000000000000000000000000000000000000000000000000000000020240170000153000000000001000001000000000000000010001001000000003828400000000000000000011000000000000220000020
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................211691.0069100000008130000000000000000000000001990000000100000000000000000000000000000000000000664732402700010000100000000000000001650500000000000000000000000047413800000000000000000000000000000000000000000000000000000000000000000000000000000000304000000002933000000000000000000000000000000000000030000000000039200000000000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................211632.00632000000021300000000000000000000000026010000000110000000000000000000000000000000000019103321600010000000240000000000001890500000000000010000000000027183040300000000000000000000000000000000000000000000100000040000000003000000000200000003000100001291831000100000100000100000000000000001010000000000000331900000000000000000000000000000000110000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231537.0053700001001200000000000000000000000008010000010000000000000000000000000000000000000029164530000000000000000000000000400000000000000000000000000083878260000000000000000000000000000000000000000000000000000000000000000000000000000110300000100004300000000000000000000000000000000000001110000000002653000001000000000000000000000000000000000000
.................................................................................................................................GAG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................191520.005200000000000000000000000000000000000300000000000000000000000000000000000000000000001526636107100000000000000200019200001500440000000000000000000000000518060000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000057100000000000000000000000000000000010000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................241514.0051400000001140000000000000000000000000300000000000000000000000000000000000000000000008420191480000000000000000000002000150040000000000000000000000004577107516000000100000000000000000000000000000000000000000000000000020000000000000000000001000000001011000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................231484.0048400000001010000000000000000000000001000000000000000000000000000000000000000000000062812000000000000000000020100040020000000000000000000000004525563811000000000000000000000000000000000000000000000000000000000000000000000000001000300110200002300000000000000000000000000000000000000000000000002419000000000000000000000000000000000120021000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................221475.00475000000212000000000000000000000000002000000000000000000000000000000000000000000000060109126010000000000000000005300040060000000000000000000000002376100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000000200000000000000000000000000000000310600000000000000000000000000000000020100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................241450.004500000000100000000000000000000000000000000000000000000100000000000000000000000000002001200000000000000000000010001007000000000000000000000000126517170000000000000000000000000000000000000000000001000000000000010001000000000001020100000300001300000000000000000000000000000000000101000000000001481400000001000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................231414.00414000000061000000000000000000000000010000000000000000000000000000000000000000000000411484176000002000000001000000000014103000000000000000000000000133279144000000000000000000000000000000000000000000000000000000000000000000000000000000103000000001722000000000000000010000010100000000000000000000000031300000000000000000001000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................201407.00407000000000000000000000000000000000021100000000000000000000000000000000000000000000004334000000000000020000000000004000000000000000000000000000262333381100000000000000000000010000000000000000000000000000000000000000000000000200000000000000001417000000000000000001000000000000000000010000000000017000100000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA.......................................................................................................................................................................................251395.0039500000022000000000000000000000000003000000000000000000000000000000000000000000000010069164900000000000000000000080001120900000000000000000000000032228001000000000000000000000000000000000000000000000000000000000000000000000000000001010000000050000000000000000000000000000000000000000000000000072000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................211280.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000030211000000000000000000000000000003000000000000000000000000171690000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004700000000000000000000000000000000010000000000100001912300000000000001000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................201279.0027900000000020000000000000000000000004200000000000000000000000000000000000000000000001305917100001000000000100002000008001000000000000000000000000318720000000000000000000000100000000000000000000000000000000000000000000000000000001013003000010160000000000000000100000000000000002000000000001000442500000000000000000000010001000000010000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................241222.00222000000110000000000000000000000000000000000000000000000000000000000000000000000000256424730000020000000007000002000510000000000000000000000000012222822000000000000000000000000000000000000000000000000000000000000000000000000000000201000000002100000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................241206.002060000000000000000000000000000000000000000000000000000000000000000000000000000000002311000000000000000000000000000000000000000000000000000000730711140000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000072010000000000000000000000000000001000000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................221198.001980000000000000000000000000000000000100000000000000000000000000000000000000000000001784170000000000000000000000000300100000000000000000000000016718000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000360000000000000000000000000000000000000000000000000102800000000000000000000000000000001030000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................231192.00192000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005113000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000160100000000000000000000000000000000000000000000000154900000000000000000000000000000000000000000
................................................................................................................................GGAG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................201178.001780000001200000000000000000000000000120000000000000000000000000000000000000000000000261100230000000000000000000012130002103000000000000000000000000228000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000058000000000000000000000000000000000000000000
...............................................................................................................................TGGAG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................211170.0017000000000000000000000000000000000005000000000000000000000000000000000000000000000061001300000000000000000400160000400400000000000000000000000021525600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................191147.0014700000000000000000000000000000000009000000000100000000000000000000000000000000000010350000000000000000000000000001000000000000000000000000001102660000000000000000000000000000000000000000001000000000000000030000000000000000000000000000001190001000000000000000000100000000000000100000001000371601000000000000000100000000000100000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................221143.0014300000000000000000000000000000000000000000000000000000000000000000000000000000000061793100000000000000000000000004000000000000000000000000000426800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035000000000020000000000000000000000000000000000000063800100000000000000000000000000000000000010
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................201116.001160000000000000000000000000000000000820000000000000000000000000000000000000000000000108200000000000000000000000000200000000000000000000000000000002000000000000010000000000000000000000000000000000000000000000000000000000000000001000000007300000000000000000000000000000000000000000000000001500000000000000010000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................231106.001060000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000038100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000100010000000000080500000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................211103.00103000000000000000000000000000000000000000000000000000000000000000000000000000000000008500000000000000000000000000100100000000000000000000000016183010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000810000000000000000000001000000010000000000000000000030900000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................211100.0010000000000010000000000000000000000002000000000000000000000000000000000000000000000010210000000000000000000000000030010000000000000000000000000142000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000250000001000100000000000000000000001000000000000000462500000000000000000000000000000000100000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGC........................................................................................................................................................................................24187.00870000000000000000000000000000000000001000000000000000000000000000000000000000000001725011100000000000000000000000000000000000000000000000000000178310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................23186.0086000000010000000000000000000000000000000000000000000000000000000000000000000000000913307000000000000000000000000010000000000000000000000000009121180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000
..................................................................................................................................AG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................18175.0075000000000000000000000000000000000000000000000000000000000000000000000000000000000154041800000000000000000000980003101000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20170.0070000000021000000000000000000000000010000000000000000000000000000000000000000000000154163300000000000000000000000001002000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGCC.......................................................................................................................................................22169.00690000000000000000000000000000000000000000000000000000000000000000000000000000000001008000000000000000000000000000000000000000000000000000000113200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGATA......................................................................................................................................................23167.0067000000002000000000000000000000000000000000000000000000000000000000000000000000000103200000000000000000000000000000000000000000000000000000011016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000026200000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................25157.00570000000000000000000000000000000000100000000000000000000000000000000000000000000001600150000000000000000000010000100000000000000000000000000008790000000000000000000000100000000000000000000000000000000000000000000000000002010100000000001000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................19150.00500000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000001000000000000000000000000000026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032200000000000000000000000000000000000000000
..............................................................................................................T---------------ATGGAG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................23143.00430000000100000000000000000000000000000000000000000000000000000000000000000000000002000700000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................25141.0041000000012000000000000000000000000000000000000000000000000000000000000000000000000934420000000000000000000030000201000000000000000000000000011500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAGA......................................................................................................................................................23141.00410000000200000000000000000000000000000000000000000000000000000000000000000000000004001000000000000000000000000001000000000000000000000000000007000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000022200000000000000000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................23140.00400000000001000000000000000000000000000000000000000000000000000000000000000000000000060200000000000000000000000000000000000000000000000000000138000000000000000000000000000000000000000000000000000000000000000000000000000100002010000000011000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA....................................................................................................................................................25140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000171900000000000000000000000000000000000000000000100000000000000000000000000000000000001000100000000000000000000000000000000000000000200000000000003000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA......................................................................................................................................................................................26138.0038000000050000000000000000000000000000000001000000000000000000000000000000000000000840010000000000000000000000000200000000000000000000000000018300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTTT........................................................................................................................................................................................24136.00360000000000000000000000000000000000000000000000000000000000000000000000000000000002330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................22135.00350000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000041000000000000000100000000000000000000100000000000022200000000000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA.......................................................................................................................................................................................26135.0035000000010000000000000000000000000000000000000000000000000000000000000000000000000971100000000000000000000000000000500000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000100000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGG........................................................................................................................................................................................24133.0033000000131000000000000000000000000000000000000000000000000000000000000000000000000521080000000000000000000002000200000000000000000000000000011210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................23133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000003000000000000000000000000000000000000000000
..............................................................................................................................ATGGAG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................22131.00310000000000000000000000000000000000100000000000000000000000000000000000000000000006000000000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT.........................................................................................................................................................................................23130.00300000000200000000000000000000000000000000000000000000000000000000000000000000000006153000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................18128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000002000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000014500000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTA.........................................................................................................................................................................................23127.00270000002400000000000000000000000000000000000000000000000000000000000000000000000001240000000000000000000000030000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT...........................................................................................................................................................................................22125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000008131000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................22124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000100000000000000000000000005701000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
droSim2
CTCA------------------------------------------GTGAAGT-TGCAAGTGAAA------------------------------CT--TCAA---ATATT---------------CTGTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-------------------------------------------------------------C---AAG-------------------TC-----AAGAA----------------------ATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22167041.00670410019911842819111232322303137373719000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21125945.002594500814443789551359787893324303000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2312764.002764008114001321500895025504000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2011723.001723013850411772602029702000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2511292.001292002000117463260301500000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2111188.00118840110810000273211500000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2411139.00113900700015354350616400000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2311061.0010610020080341210146048900000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................221759.007591071500000101901400000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231524.00524003490001078870900000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................231389.00389313460003091401111000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................241347.003471028510001292001000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................211243.002430023600010210300000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................221225.002253010500030475001700000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................221207.00207003800020443109200000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................231172.0017200700011825003001000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................231139.0013900470000041440700000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................21194.009400070000363701400000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................22172.00720001000139260500000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................20157.0057005400000110100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19148.00480000020025170400000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................22140.00400020000014170700000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................24137.0037005000001980302000
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................18135.0035002033000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCT...............................................................................................................................................................................................18129.0029002900000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21128.0028001600000240600000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20127.0027000200001370500000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................20126.0026102300000010100000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................22125.0025002100000220000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20122.00220000000012100000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA..........................................................................................................................................................................................23122.0022001700000230000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................22119.001900100001480500000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................21118.0018000000001001700000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................22117.0017001700000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................24115.001500000000780000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22114.0014001000002101000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG..........................................................................................................................................................................................22113.0013001300000000000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................23113.001300000000430600000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22112.001200010100230500000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................2319.00900000000130500000
...............................................................................................................................................................................................TAGACAACCATTGAA.......................................................................................................................................................1519.00900000000090000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................2118.00800000000210500000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................1918.00800000001240100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................2418.00800110000100500000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG..........................................................................................................................................................................................2317.00700700000000000000
.............................................................................................................................................................................................GCTAGACAACCATTGAA.......................................................................................................................................................1717.00700000000250000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................2216.00600000000230100000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGA..........................................................................................................................................................................................2216.00600500000000100000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTG.........................................................................................................................................................1916.00600010000220100000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2316.00600100000120200000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGG........................................................................................................................................................................................2515.00500500000000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................1915.00500000000220100000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTT..............................................................................................................................................................................................1915.00500500000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................2315.00500500000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................2415.00500100000000400000
............................................................................................................................................................................................AGCTAGACAACCATTGAA.......................................................................................................................................................1815.00500000000320000000
..............................................................................................................................................................................................CTAGACAACCATTGAA.......................................................................................................................................................1614.00400000000310000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................1914.00400400000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA....................................................................................................................................................2514.00400100000020001000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT.........................................................................................................................................................................................2314.00400400000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAC............................................................................................................................................................................................2114.00400400000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA.....................................................................................................................................................2414.00400300000010000000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................2214.00400400000000000000
...............................................................................................................................................TAGTTTCTTTGGTCGTCCAGC.................................................................................................................................................................................................2114.00400300000010000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTT..............................................................................................................................................................................................1813.00300300000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGG........................................................................................................................................................................................2413.00300200000000100000
...........................................................................................................................................................................................AAGCTAGACAACCATTGA........................................................................................................................................................1813.00300000000210000000
........................................................................................................................................................................................ATAAAGCTAGACAACCA............................................................................................................................................................1713.00300000000210000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2312.00200000000110000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGACT......................................................................................................................................................................................2612.00200200000000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAA......................................................................................................................................................2112.00200100000010000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.....................................................................................................................................................2412.00200000000020000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGC........................................................................................................................................................................................2512.00200000000020000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTC..............................................................................................................................................................................................1912.00200200000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAC.......................................................................................................................................................................................2612.00200000200000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT...........................................................................................................................................................................................2212.00200200000000000000
droSec2
CTCA------------------------------------------GTGAAGT-TGCAAGTGAAA------------------------------CT--TCAA---ATATT---------------CTGTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-------------------------------------------------------------C---AAG-------------------TC-----AGGAAATCAAGTTAAGTGATCC---CCAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22119825.00198255411218407865
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21110325.001032518039901241
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2311484.001484322141238
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2311312.001312220125139
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2011212.001212131118315
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................241431.00431204254
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................221322.003222031010
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................251210.00210102054
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................221129.00129101262
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................211105.00105150864
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................231103.0010320974
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................21191.009110900
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................23163.006300621
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................22157.005750520
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................23151.005110491
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19149.004950431
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22134.003410303
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................22133.003300303
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................24131.003110300
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21130.003030270
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................23128.002800262
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20128.002830250
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20127.002760210
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................23126.002600251
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................23122.002200202
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................22122.002200220
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................20121.002100210
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................23121.002140170
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................24119.001900163
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................22117.001700161
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21116.001610141
.................................................................................................................................TGG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................19116.001610132
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................24115.001500150
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................24113.001300130
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................21113.001300121
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22112.001200111
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................19110.001000100
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................2118.0080071
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2417.0070070
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................2516.0060060
........................................................................................................................................................................................ATAAAGCTAGACAACCATTA.........................................................................................................................................................2015.0050050
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................2215.0050050
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................1815.0050050
................................................................................................................................GTGG-CGGTTGCAATTAGTTT................................................................................................................................................................................................................2014.0041030
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................2614.0040040
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................2214.0040040
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................2114.0040040
..........................................................................................................................................................................................AAAGCTAGACAACCATTG.........................................................................................................................................................1814.0040040
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................1913.0030030
.........................................................................................................................................................................................TAAAGCTAGACAACCATTG.........................................................................................................................................................1913.0030030
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................2013.0031020
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA..........................................................................................................................................................................................2313.0030030
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................2113.0030030
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAA......................................................................................................................................................2113.0030030
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC......................................................................................................................................................2312.0020020
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2512.0020020
........................................................................................................................................................................................ATAAAGCTAGACAACCATGA.........................................................................................................................................................2012.0020020
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2412.0020020
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................2112.0021010
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA........................................................................................................................................................2312.0020020
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT....................................................................................................................................................2211.0010010
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................2311.0010010
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2411.0010001
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2511.0010010
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT.........................................................................................................................................................................................2311.0010010
droYak3
CTCA------------------------------------------GTGAAGT-TGCAAGTGAAA------------------------------TTAATCA-----GATA---------------CTGGGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATTA-------------------------------------------------------------C---GGG-------------------TC-----AAGAA----------------------ATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22143469.004346903040260314932340000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................23113202.00132020131143617520100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21111677.00116770279630200041330000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2313785.0037850134533282100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2011936.0019360417561740200000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................2211589.0015890113462420000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................231988.0098800941460100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231701.0070100678230000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................241574.0057400509650000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................231559.0055900483760000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................251375.0037501673070000000
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................181362.003620036200000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................221357.003570035250000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................241261.0026100452160000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................231255.002550125040000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................241254.0025401201520000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................211246.002460123780000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................221245.0024511202410000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................231120.0012000104160000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................221104.001040066370100000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................21197.00973053410000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................24190.0090008910000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................23188.0088008800000000
........................................................................................................................................................................................ATAAAGCTAGACAACCAC...........................................................................................................................................................18187.0087008700000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................24183.0083008210000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................23183.00830147350000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22182.00820061210000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20175.0075007500000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................24174.0074006950000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................22170.0070026530000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22163.0063006030000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG......................................................................................................................................................24156.0056005420000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20147.0047014420000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19139.0039002971200000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................22139.0039003360000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21138.0038023060000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................22137.0037013240000000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................26127.0027002700000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................22126.0026002510000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................21123.0023002210000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................22122.0022002200000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................24120.0020002000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................19115.0015001410000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21115.0015001050000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................23115.0015001230000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................23112.0012001110000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.....................................................................................................................................................22112.0012001020000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................23112.0012001200000000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................24112.0012001200000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................19110.0010001000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................20110.001000640000000
.................................................................................................................................GGG-CAGTTGCAATTAGTTT................................................................................................................................................................................................................19110.001000460000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.....................................................................................................................................................21110.001000820000000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2319.00900180000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................2119.00900540000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.....................................................................................................................................................2419.00900900000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT......................................................................................................................................................2318.00800800000000
.............................................................................................................................................................................................GCTAGACAACCATTGAAG......................................................................................................................................................1817.00700700000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAA......................................................................................................................................................2117.00700700000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT......................................................................................................................................................2417.00700700000000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA........................................................................................................................................................2316.00600600000000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA........................................................................................................................................................2516.00600600000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................2016.00610410000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAG......................................................................................................................................................2016.00600510000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................2616.00600420000000
droEre2
CACA----------------------------------------CTGTGAAGT-TGCGAGTGAAA----------------------------A-CAA----A---AGATA---------------CTGTAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC---A-------------------------------------------------------------A---GAG-------------------TT-----AGCAAATCCAGTTAAGTGA---------TSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22120463.0020463148616794021641540
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................2115807.00580748743841926360
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2314440.00444029734780662120
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2311617.0016179013600164120
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................201727.0072736596092030
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................221517.0051743376097010
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................211185.0018572100013000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................231140.00140413303000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................221133.00133012607000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231123.00123411009000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................23199.0099581013000
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................18188.008808800000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................25151.0051126031110
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................22148.00482313012000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20146.004614401000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................23143.0043131011000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22141.004104001000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................24141.004113406000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................24138.00381115012000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20136.0036161307000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................24133.003353024010
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................21131.003173021000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................22129.002932303000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................22127.002726018010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................24124.002421903000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22123.002321407000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................24123.002302102000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG......................................................................................................................................................24121.002102001000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................23119.00193709000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19119.00197903000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................21116.001611401000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................23116.00168602000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21111.00115501000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21111.00117202000
........................................................................................................................................................................................ATAAAGCTAGACAACCAC...........................................................................................................................................................18210.502102100000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................24110.001001000000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2618.0080800000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................1918.0080701000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................2218.0080602000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2418.0080701000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................2217.0070304000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................2317.0070700000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTC.........................................................................................................................................................2017.0070601000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2016.0061005000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................2015.0051103000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2315.0052201000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................2114.0040400000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................2114.0040301000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.....................................................................................................................................................2214.0041201000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................2114.0040004000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................1914.0040400000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA.......................................................................................................................................................................................2613.0032001000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................2313.0030300000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA........................................................................................................................................................2513.0030300000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................2413.0030201000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2712.0020200000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAA......................................................................................................................................................2012.0020200000
dp5
CGAA-----------AGTGACAAAAGTGAAAAAAG----TGACAAA------------------------GTTTGTGTACACTCCACGAGTT-------------GATACC---------------TTATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACACCAACACCCACACCCACCCTCACATCCATCCC--------A---GTG-------------------TC-----ATTGA----------------------TTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22145829.0045829013014050324399403040
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21111063.0011063063383616206300000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2315556.0055560945109135200000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2314487.00448701143732563600000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2011573.00157301001247022500001
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................2211166.001166023914222700000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................231822.0082202373206700000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231546.005460950902800000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................221523.005230051301000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................211335.0033505625502400000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................231334.0033406223010500000
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................181313.00313003130000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................231264.00264022590300000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................241254.0025401319022200000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................241215.002150314606600000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................221142.00142021340600000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................241102.0010203970200000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................22182.00820203003200000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22181.008104721400000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................25175.0075061105800000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................23171.0071024702100010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22165.0065004502000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20161.0061034190800000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20157.005702540100000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................22153.0053022202900000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................22148.004802430300000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................23147.004700440300000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................22147.004701400600000
........................................................................................................................................................................................ATAAAGCTAGACAACCAC...........................................................................................................................................................18242.508500850000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................24142.004200420000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................22139.003901300800000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19137.003705250700000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................21133.003307202400000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................21132.0032011201900000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................24127.002702240100000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................23126.002600230300000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................24126.002600251000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................23124.002402801400000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21123.002300140900000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................23122.002200180400000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................24121.00210490800000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21120.00200590600000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.......................................................................................................................................................23115.001500150000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.....................................................................................................................................................22113.00130090400000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................19113.001303100000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................21113.001301110100000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................23113.001300120100000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.....................................................................................................................................................24112.001200120000000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................24111.001100110000000
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................25111.001100110000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG......................................................................................................................................................24110.001000100000000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA........................................................................................................................................................23110.001000100000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................1918.0080240200000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................2118.0080070100000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2618.0080080000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2018.0080200301020
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2316.0060000600000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................2116.0060020400000
.................................................................................................................................TTG-TGGTTGCAATTAGTTT................................................................................................................................................................................................................1916.0060010500000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT......................................................................................................................................................2316.0060060000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC.....................................................................................................................................................2415.0050050000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT....................................................................................................................................................2415.0050050000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................2515.0050040100000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................2315.0050050000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA.....................................................................................................................................................2415.0050030200000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGATA......................................................................................................................................................2315.0050020300000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT....................................................................................................................................................2215.0050050000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTC.........................................................................................................................................................2015.0050050000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT......................................................................................................................................................2415.0050040100000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.....................................................................................................................................................2115.0050010400000
droPer2
CCAACCAGTGACGGAAGTGACAAAAGTGAAAAAAG----TGACAAA------------------------GTGTGTGTACACTCCACGAGTT-------------GATACC---------------TTATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACAC------------------------------------------------------------------------CAA----------------------CACCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................221705.00705107154915222
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................211489.004894523630637
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................211181.0018117704000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................231137.00137258100040
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................221107.001079737000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................231101.0010120668052
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................20168.00683459020
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................24155.00552053000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................23142.00423921000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21131.00312902000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................22130.00308119011
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................23124.00241716000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................22118.00181007001
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................24116.0016907000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................23115.00152013000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................25114.0014507020
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................20111.00111001000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................2119.009034002
....................................................................................................................................................TCTTTGGTCGTCCAGCCT...............................................................................................................................................................................................1818.008800000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................2418.008206000
...................................................................................................................................................TTCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2218.008800000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2015.005302000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................2215.005401000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................2315.005401000
.............................................................................................................................................................................TTTCTCTGATCATAAAGCTAGACAACC.............................................................................................................................................................2714.004400000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................2214.004003010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................2314.004102010
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG..........................................................................................................................................................................................2313.003300000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................2113.003002010
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................2013.003021000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................1913.003300000
...................................................................................................................................................TTCTTTGGTCGTCCAGCCT...............................................................................................................................................................................................1912.002200000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................2412.002200000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2312.002002000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................2212.002001001
....................................................................................................................................................TCTTTGGTCGTCCAGCCTT..............................................................................................................................................................................................1912.002200000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................2212.002200000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG..........................................................................................................................................................................................2211.001100000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................2411.001001000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................2311.001001000
...................................................................................................................................................TTCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................2211.001001000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTT..............................................................................................................................................................................................1811.001100000
....................................................................................................................................................TCTTTGGTCGTCCAGCCC...............................................................................................................................................................................................1811.001100000
.................................................................................................................................TTG-TGGTTGCAATTAGTTT................................................................................................................................................................................................................1911.001001000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2311.001100000
..........................................................................................................................................................GTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................1911.001001000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................2211.001000010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................2211.001000010
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2311.001001000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA..........................................................................................................................................................................................2311.001010000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................2111.001001000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................2111.001001000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................2211.001000010
.............................................................................................................................................................................................GCTAGACAACCATTGAAG......................................................................................................................................................1811.001001000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.......................................................................................................................................................2311.001100000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAG.......................................................................................................................................................................................2611.001001000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................2111.001010000
droWil2
CAAC-----------A------------------------------ACCAACA-AGCTAGTGAGA--------------------AGAA----------TTAA---C-----TTTA-----ACCAAA--TGGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT-TTAA---------------------------------------------------------GGACATCAATAGCAAAGTTCAAG--TT--T------CATCG----------------------TCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22147107.00471070297146590219
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21127809.00278090149127479180
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................23110791.001079103501073521
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2011716.0017160100168719
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................231596.005960205931
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................231538.005380405331
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................241496.004960004951
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................241280.002800002800
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................221238.002380002371
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................211171.001710901602
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................221169.001690001690
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231167.001671001660
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................221140.001400001391
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................221113.001130101120
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................22174.00740006113
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................23154.0054000540
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20150.0050040460
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19143.0043010411
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................22140.0040000400
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................23137.0037010360
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................23130.0030020280
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................21128.0028000280
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21127.0027000270
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................22125.0025000250
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................23123.0023000230
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................22121.0021000210
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................23121.0021010200
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................24118.0018000180
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21118.0018000180
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA........................................................................................................................................................23116.0016010150
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................25116.0016000160
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................20114.0014000131
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................21113.0013000130
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20113.0013020110
..............................................................................................................................................................................................................GTTCGTTGTGGCATTATCGCCA.................................................................................................................................22110.0010000100
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................24110.001001090
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................2319.00900090
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................1818.00800080
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................1918.00800080
........................................................................................................................................................................................ATAAAGCTAGACAACCATTA.........................................................................................................................................................2018.00800080
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAGA......................................................................................................................................................2317.00700070
...............................................................................................................................................TAGTTTCTTTGGTCGTCCAGC.................................................................................................................................................................................................2117.00700070
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................2117.00700061
.................................................................................................................................TGGCGGGTTGCAATTAGTTT................................................................................................................................................................................................................2017.00700070
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA....................................................................................................................................................2517.00700070
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................2415.00500050
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................1915.00500050
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................2215.00501040
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2515.00500050
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAG.....................................................................................................................................................2414.00400040
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2114.00401030
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................2214.00400040
........................................................................................................................................................................................ATAAAGCTAGACAACCATTT.........................................................................................................................................................2014.00400040
...........................................................................................................................................................................................AAGCTAGACAACCATTGA........................................................................................................................................................1814.00400040
.......................................................................................................................................................TTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2214.00400040
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2414.00400040
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................2413.00301020
........................................................................................................................................................................................ATAAAGCTAGACAACCATGA.........................................................................................................................................................2013.00300030
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA.......................................................................................................................................................................................2513.00300030
..............................................................................................................................................................................................CTAGACAACCATTGAAGTTCGT.................................................................................................................................................2213.00300030
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2413.00300030
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTG.........................................................................................................................................................2213.00300030
...............................................................................................................................................TAGTTTCTTTGGTCGTCCAGCC................................................................................................................................................................................................2213.00310020
......................................................................................................................................................................................TCATAAAGCTAGACAACCATT..........................................................................................................................................................2113.00300030
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.....................................................................................................................................................2412.00200020
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................2212.00200020
..............................................................................................................................A--TGGCGGGTTGCAATTAGTTT................................................................................................................................................................................................................2112.00200020
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT....................................................................................................................................................2512.00200020
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2512.00200020
...........................................................................................................................................................TCGTCCAGCCTTAGGTGA........................................................................................................................................................................................1812.00200020
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.....................................................................................................................................................2112.00200020
.........................................................................................................................................................................................TAAAGCTAGACAACCATTG.........................................................................................................................................................1912.00200020
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAA......................................................................................................................................................2112.00200020
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................2112.00200020
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................2212.00200020
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATA.....................................................................................................................................................2411.00100010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................2311.00100010
droVir3
CACA-----------AGTTCTCGATTTGATAACCG----TCGCAAT------------------------ATATATATATAT---ATAT-------------ATCTATATC---------------ATATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGC--TAT----------------------------------------------------------------AAT----------------CTGACCA----------------------------TATASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................22118755.00187550039860010000008571000110330210234041811271346973466022023210167167123941424688331817100107990326102019819916220100001259382404139205
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2313202.003202001160000000000213000000000011100001270423916476110067359565032732151271813110003210011002242821510000016058602535
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................2113014.003014003203000000000010000001011201110111403757821700000318455514454500016484142000710350000003336291321
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................2312797.002797011198600000000150000100000000000012202629944600000261822251728163110665000301541000013115700000058231377
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................201982.0098200157300000000000000000000102010002034430000112111210209261511129000436420000911240000002123241117
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................241957.009570005000000000200000001000010000198032163242358000003200010000110000320000030400000031102
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................231604.0060400025900000000010000000000000000001061131000022719141519253844130102021000008840000000351711107
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................221592.005920003820000000001000000000000000000605717140000187620427543400094500000121600000098773
........................................................................................................................................................................................ATAAAGCTAGACAACCA............................................................................................................................................................171455.004550000000000000000000000000000000000000000004784841334058254126111470002800000000000000010000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................251330.003300004000000000000000000000001000017018699279000013110111200000000331000002200000001000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................231318.00318000160000000000000000000000000000190112346480000551409456391110000490000000400000001200
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................231277.002770009100000000010000000000000000000000010000016717119151212184750002670000020610000051012
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................241275.00275000140000000000000000000000000000305302317000003216222252315186834000440000001000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................231258.002580005800000000010000000000000000002013210000014171061118618121810170007190000000200000011201
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................241198.00198000500000000002000000000000000000401441001001711173814101153380008130000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................181149.00149000660000000000000000000000000000000220000018759107397302000800000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................221132.0013200040000000000000000000000000000503714100000120115334252321000650000004400000060200
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................221125.001250006700000000000000000000000000000000110000010130212401000011000003012000000240000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................211123.0012300088000000000000000000000000000000014400000010000010000000060000000800000033301
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................221116.001163207000000000000000000000000000050518171700000623024143602000530001000000000000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................23197.009700084000000000000000000000000000010124100000000000000000000010000000100000010001
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................24195.009500033000000002001000000000002000000145200002414306323113000110000000301000011202
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................22171.007100040000000000000000000000000000010113000000320010001010000020000030400000061100
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................23152.00520102000000000000000000000000000000031400000325634121240000440000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................21147.00472300002000000000000000000000000010154101000000214041120000651000000000000000000
.................................................................................................................................TAG-AGGTTGCAATTAGTTT................................................................................................................................................................................................................19136.00360000000000000100000000010000000030276600004120000000000000000000000000000010011
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................20135.003500032000000000000000000000000000000010000000000000000000000000000000100000010000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................22132.003200024000000000000000000000000000000110300000010000000000000010000000000000010000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................22124.002400013000000000000000000000000000000000000000100001001000000120000000200000011010
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................23121.00210008000000000000000000000000000000113300000000001000000000000000000400000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA.......................................................................................................................................................................................25121.002100000000000000000000000000000000100351100000000000000000000000000000000000010000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................24120.002000010000000000000000000000000000000010000000001111011000000300000000000000000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG......................................................................................................................................................24119.001900018000000000000000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................20119.001900017000000000000000000000000000000000000000000000000000000010000000100000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................22118.00180009000000000000000000000000000010110200000001000000000000110000000000000001000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................24118.001800014000000000000000000000000000000001200000000001000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21118.00180002000000000000000000000000000000125200000010101000000000110000000000000010000
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................19117.00170004000000000000000000000000000000102100000101000110110000100000000000000010100
................................................................................................................................ATAG-AGGTTGCAATTAGTTT................................................................................................................................................................................................................20115.00150001000000001000000000000000000000012700001000000000000000000000000100000001000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTC.........................................................................................................................................................................................23115.00150001000000000000000000000000000010000000001810100100000000100000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTC.........................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000110041000000400000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................22111.00110009000000000000000000000000000000000000000000000000000000020000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCAC...........................................................................................................................................................18110.001000010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................2319.0090009000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCT...............................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000011020000300000000000002000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA.......................................................................................................................................................................................2619.0090000000000000000000000000000000000162000000000000000000000000000000000000000000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2618.0080006000000000000000000000000000000002000000000000000000000000000000000000000000
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2417.0070007000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT......................................................................................................................................................2317.0070005000000000000000000000000000000000000000000000000000000000000010000000010000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................2617.0070000000000000000000000000000010000000100000003000100000000000000000000000010000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................2217.0070005000000000000000000000000000000000000000000000001000000000000000000000010000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................2216.0060000000000000000000000000000000000000100000010000100001000110000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.......................................................................................................................................................................................2516.0060000000000000000000000000000000000010400000000000000100000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT....................................................................................................................................................2516.0060000000000000000000000000000000000000200000010001000020000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................2116.0060004000000000000000000000000000000000000000000000000000000020000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTA.............................................................................................................................................................................................2016.0060001000000000000000000000000000000000000000001000000001000200000000000000000100
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................2315.0050002000000000200000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTCT........................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000100000000400000000000000000000
..................................................................................................................................AG-AGGTTGCAATTAGTTT................................................................................................................................................................................................................1815.0050000000000000000000000000000000000110300000000000000000000000000000000000000000
...............................................................................................................................TATAG-AGGTTGCAATTAGTTT................................................................................................................................................................................................................2115.0050000000000000000000000000000000010001300000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA......................................................................................................................................................................................2615.0050000000000000100000000000000000010021000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................1915.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................2315.0050000000000000000000000000000000000020200000000100000000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT........................................................................................................................................................................................2515.0050001000000000000000000000000000000002000000000001010000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................2415.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2514.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................2114.0040002000000000000000000000000000000000000000000000000000000020000000000000000000
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA........................................................................................................................................................2514.0040002000000000000000000000000000000010000000000000000000000010000000000000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................2114.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATC.............................................................................................................................................................................3514.0040000000000000000000000000000000000000000000220000000000000000000000000000000000
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................2114.0040002000000000000000000000000000000000100000000000000000000010000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2014.0040000000000000000000000000000000000010300000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA.....................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000011000000100000000100000000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................1914.0040002000000000000000000000000000000001100000000000000000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.....................................................................................................................................................2414.0040001000000000000000000000000000000000000000001100100000000000000000000000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC.....................................................................................................................................................2414.0040003000000000000000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGAA....................................................................................................................................................2413.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAA......................................................................................................................................................2113.0030002000000000000000000000000000000000000000000000000000000000000010000000000000
...........................................................................................................................................................................................AAGCTAGACAACCATTGA........................................................................................................................................................1813.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CTTTGGTCGTCCAGCCT...............................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000100000010000000000000000100000000000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC......................................................................................................................................................2313.0030001000000000000000000000000000000000000000000000000000000000000000000000110000
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT....................................................................................................................................................2213.0030001000000000000000000000000000000000100000000000100000000000000000000000000000
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTT.........................................................................................................................................................................................2413.0030001000000000000000000000000000000000000000000010001000000000000000000000000000
droMoj3
TTCA-----------AT----------------------------TATAAAAT-TTCTAGTGCATGGTTC--------AAACTTAAAAAGAAAA-CAA---AATCTATATC---------------GTATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC--TATATATAATATATATATATACATCTATG-----------------------AAAAGTTTTTATGAAAGT-------------------TC-----AA---------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................221144666.00144666102689251419582
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................21149844.00498443271215471212
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG......................................................................................................................................................23144021.00440210173300422880
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................23117180.0017180038800167920
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG......................................................................................................................................................2219277.00927725130087620
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT......................................................................................................................................................2315791.00579101080056830
........................................................................................................................................................................................ATAAAGCTAGACAACCATTG.........................................................................................................................................................2015554.00555422100153401
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................2312097.00209701270019691
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.....................................................................................................................................................2411485.0014850620114220
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.......................................................................................................................................................2211470.0014700140014560
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2311316.001316030013130
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.......................................................................................................................................................2111294.0012940240012700
........................................................................................................................................................................................ATAAAGCTAGACAACCAT...........................................................................................................................................................1811163.001163000011630
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC......................................................................................................................................................2311056.0010560100010460
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGA........................................................................................................................................................221549.0054908005410
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................221546.00546164004810
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA......................................................................................................................................................221544.00544017005270
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.....................................................................................................................................................241437.0043704004330
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.......................................................................................................................................................221430.00430028004020
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAA.......................................................................................................................................................201396.0039601003950
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG......................................................................................................................................................241328.0032802003260
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGA........................................................................................................................................................201294.0029403002910
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................231218.0021800002180
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT......................................................................................................................................................221210.0021004002060
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................241209.00209033001751
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................241202.00202012000820
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.....................................................................................................................................................241170.0017001001690
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA......................................................................................................................................................241155.0015501001540
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................241151.0015102001490
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAG......................................................................................................................................................211150.0015000001500
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................231149.00149031001180
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA........................................................................................................................................................................................251143.0014307900640
........................................................................................................................................................................................ATAAAGCTAGACAACCAC...........................................................................................................................................................182132.5026500002650
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG.........................................................................................................................................................................................231131.0013106001250
........................................................................................................................................................................................ATAAAGCTAGACAACCATT..........................................................................................................................................................191124.0012408001160
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC......................................................................................................................................................221122.0012200001220
..........................................................................................................................................................................................AAAGCTAGACAACCATTGA........................................................................................................................................................191114.0011400001140
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.......................................................................................................................................................231105.0010505001000
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.......................................................................................................................................................221101.0010101000910
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................21193.009312900630
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA......................................................................................................................................................23184.00840500790
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................24183.00830200810
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.......................................................................................................................................................23174.00740000740
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................26172.00720000720
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT..........................................................................................................................................................................................22170.007001200580
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGG........................................................................................................................................................21166.00660600600
...........................................................................................................................................................................................AAGCTAGACAACCATTGAA.......................................................................................................................................................19161.00610000610
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT......................................................................................................................................................23150.00500000500
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.....................................................................................................................................................23149.00490100480
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT......................................................................................................................................................24148.00480200460
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA........................................................................................................................................................23148.00480000480
.....................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.......................................................................................................................................................25145.00450100440
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAA......................................................................................................................................................21142.00420000420
.......................................................................................................................................................................................CATAAAGCTAGACAACCATTG.........................................................................................................................................................21142.00420200400
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA........................................................................................................................................................25141.00410000410
...........................................................................................................................................................................................AAGCTAGACAACCATTGAAG......................................................................................................................................................20141.00410100400
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGATT......................................................................................................................................................23141.00410100400
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC..........................................................................................................................................................................................23140.00400000400
..........................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.....................................................................................................................................................22131.00310100300
....................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG......................................................................................................................................................27129.00290000290
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT....................................................................................................................................................25128.00280000280
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC.....................................................................................................................................................24128.00280000280
.........................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT....................................................................................................................................................24125.00250100240
...........................................................................................................................................................................................AAGCTAGACAACCATTGA........................................................................................................................................................18124.00240000240
.............................................................................................................................................................................................GCTAGACAACCATTGAAG......................................................................................................................................................18124.00240000240
.....................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG...........................................................................................................................................................................................21123.00230200210
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGT........................................................................................................................................................21122.00220400180
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGC........................................................................................................................................................21122.00220170050
......................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG......................................................................................................................................................25121.00210000210
droGri2
GGCATC---------AGTTT------T--------G----------GTTAAAT-GAAAAATGATA------------------------------AA--TCGATCTATATT---------------TTATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGAT--TATATAGTGTA----------------------------------------------------------TA-------TAATATT----CC-----TGA----------------------TATASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGA........................................................................................................................................................2122.00413
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.......................................................................................................................................................2221.00211
........................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA......................................................................................................................................................2320.50101
....................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG............................................................................................................................................................................................2120.50101

Generated: 10/20/2015 at 06:50 PM