dan-mir-315

ATCTTTGGCTGTAATAGTTTGGCTTTTTTATATAAGAGCTCCTAAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAAATTATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACATTTTAAGTGTGAAATATTCTTTTAAAGGGTGAGTAAAT ********************************************.((((((((((....(((((((((((((((.(((((((.(((........)))..))))))))))))))))))))))....))))))).)))..******************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M058 embryo	V055 head	V039 embryo	V105 male body	M044 female body
.............................................................TTTTGATTGTTGCTCAGAAAGCC....................................................................................................	23	0	1	14944.00	14944	6924	5369	1980	476	136	59
.............................................................TTTTGATTGTTGCTCAGAAAGC.....................................................................................................	22	0	1	7154.00	7154	5510	458	894	207	58	27
.............................................................TTTTGATTGTTGCTCAGAAAG......................................................................................................	21	0	1	1857.00	1857	1199	20	568	17	38	15
.............................................................TGTTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	764.00	764	2	759	3	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCCT...................................................................................................	24	1	1	492.00	492	417	16	42	12	3	2
.............................................................TTTTGATTGTTGCTCAGAAAGCA....................................................................................................	23	1	1	245.00	245	202	0	37	3	3	0
.......................................................................................................CTTTCGAGCAATAATTGAAACC...........................................................	22	0	1	244.00	244	28	178	23	0	2	13
.............................................................TTTTGATTGTTGCTCAGAAAGA.....................................................................................................	22	1	1	186.00	186	141	1	38	0	6	0
.............................................................TTTTGATTGTTGCTCAGAAA.......................................................................................................	20	0	1	179.00	179	112	1	54	3	4	5
.............................................................TTTTGATTGTTGCTCAGAAATCC....................................................................................................	23	1	1	152.00	152	117	6	16	12	1	0
.............................................................TTCTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	147.00	147	12	132	3	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGAC....................................................................................................	23	1	1	135.00	135	56	75	2	1	1	0
.............................................................TTTTGATTGTTGCTCAGAAAGCT....................................................................................................	23	1	1	127.00	127	77	1	40	0	9	0
.............................................................TTTTGATTGTTTCTCAGAAAGCC....................................................................................................	23	1	1	110.00	110	67	0	15	25	3	0
.............................................................TTTTGATTGTTGCTCAGAAATC.....................................................................................................	22	1	1	107.00	107	92	2	7	6	0	0
.............................................................TTTTGATTGTTGATCAGAAAGCC....................................................................................................	23	1	1	105.00	105	72	24	8	0	1	0
.............................................................TTTTGATTGTTTCTCAGAAAGC.....................................................................................................	22	1	1	97.00	97	77	0	4	15	1	0
.............................................................TTTTGATTGTTGCTCAGA.........................................................................................................	18	0	1	91.00	91	35	0	56	0	0	0
.............................................................TTTTGATTGTTGCTCAGAA........................................................................................................	19	0	1	84.00	84	57	3	22	0	1	1
.............................................................TTTTGATTGTTGCTCATAAAGCC....................................................................................................	23	1	1	70.00	70	22	4	20	23	1	0
.............................................................TTTTGATTGTTGCTCAGAAAGCCA...................................................................................................	24	1	1	68.00	68	44	4	16	3	1	0
.............................................................TGTTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	65.00	65	0	63	2	0	0	0
..............................................................TTTGATTGTTGCTCAGAAAGCC....................................................................................................	22	0	1	64.00	64	40	19	0	0	0	5
.............................................................TTTGGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	59.00	59	0	50	7	2	0	0
.............................................................TTTTGATTGTTGATCAGAAAGC.....................................................................................................	22	1	1	59.00	59	49	4	5	0	1	0
.............................................................TTTTGATTGTTGCTAAGAAAGCC....................................................................................................	23	1	1	56.00	56	34	14	8	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	54.00	54	45	0	9	0	0	0
.............................................................CTTTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	48.00	48	18	23	5	2	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	45.00	45	8	32	5	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAACC....................................................................................................	23	1	1	37.00	37	34	0	0	2	1	0
.............................................................TTTTGATTGTTGCTCAGAAAGT.....................................................................................................	22	1	1	37.00	37	28	0	9	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	35.00	35	31	0	3	1	0	0
.............................................................TCTTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	34.00	34	15	15	3	0	1	0
.............................................................TTTTGGTTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	34.00	34	14	17	3	0	0	0
.............................................................TTTTGATTGTTCCTCAGAAAGCC....................................................................................................	23	1	1	33.00	33	6	13	10	3	1	0
.............................................................TTTTGATTGTTGCTCATAAAGC.....................................................................................................	22	1	1	32.00	32	18	0	8	6	0	0
.............................................................TTTTGATTGTTGCTAAGAAAGC.....................................................................................................	22	1	1	31.00	31	27	1	2	1	0	0
..............................................................TTTGATTGTTGCTCAGAAAGC.....................................................................................................	21	0	1	29.00	29	24	2	2	0	0	1
.............................................................TTTTGATTGCTGCTCAGAAAGCC....................................................................................................	23	1	1	28.00	28	14	4	10	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACCC....................................................................................................	23	1	1	27.00	27	20	2	3	0	2	0
.............................................................TTTTGATTGTTGCTCAGGAAGCC....................................................................................................	23	1	1	27.00	27	18	5	3	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAAC.....................................................................................................	22	1	1	26.00	26	18	1	1	5	1	0
.......................................................................................................CGTTCGAGCAATAATTGAAACC...........................................................	22	1	1	25.00	25	0	25	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACC.....................................................................................................	22	1	1	24.00	24	15	3	4	2	0	0
.............................................................TTTTTATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	24.00	24	15	5	1	2	1	0
.............................................................TTTAGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	23.00	23	2	20	1	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAG......................................................................................................	21	1	1	22.00	22	19	0	3	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAATCC....................................................................................................	23	2	1	22.00	22	17	0	2	3	0	0
.............................................................TTTTGATTGTTACTCAGAAAGCC....................................................................................................	23	1	1	21.00	21	5	10	4	2	0	0
.............................................................GTTTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	21.00	21	5	13	3	0	0	0
.............................................................TTTTTATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	20.00	20	20	0	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAAAG......................................................................................................	21	1	1	19.00	19	17	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAAAAAGCC....................................................................................................	23	1	1	18.00	18	8	7	2	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAA......................................................................................................	21	1	1	18.00	18	16	0	2	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	18.00	18	4	11	2	1	0	0
.............................................................TTTTGATTGTTGCCCAGAAAGCC....................................................................................................	23	1	1	17.00	17	8	5	3	0	1	0
.............................................................TTTTGATTTTTGCTCAGAAAGCC....................................................................................................	23	1	1	17.00	17	5	3	2	7	0	0
.............................................................ATTTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	17.00	17	3	11	3	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGTC....................................................................................................	23	1	1	17.00	17	5	2	5	4	0	1
.............................................................TGCTGATTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	17.00	17	0	17	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAT......................................................................................................	21	1	1	16.00	16	16	0	0	0	0	0
.............................................................TTTTGATTGCTGCTCAGAAAGC.....................................................................................................	22	1	1	16.00	16	12	0	4	0	0	0
...............................................................TTGATTGTTGCTCAGAAAGCC....................................................................................................	21	0	1	16.00	16	11	5	0	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAATC.....................................................................................................	22	2	1	15.00	15	13	0	0	2	0	0
.............................................................CTTTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	15.00	15	11	0	1	2	1	0
.............................................................TTTTGATTGTTCCTCAGAAAGC.....................................................................................................	22	1	1	15.00	15	8	1	2	3	1	0
.............................................................TTTTGATTGTTGCTCAGCAAGCC....................................................................................................	23	1	1	14.00	14	0	0	12	2	0	0
.............................................................TTTTGATTGTTGCTCACAAAGCC....................................................................................................	23	1	1	14.00	14	0	0	13	1	0	0
.............................................................TTGTGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	14.00	14	13	0	1	0	0	0
.............................................................TTTTGATTATTGCTCAGAAAGCC....................................................................................................	23	1	1	14.00	14	7	3	1	0	0	3
.............................................................TTTTGATTGTTGCTCGGAAAGCC....................................................................................................	23	1	1	14.00	14	3	7	4	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAGGCC....................................................................................................	23	1	1	14.00	14	6	6	1	0	0	1
.............................................................TTTTGATTGGTGCTCAGAAAGCC....................................................................................................	23	1	1	14.00	14	1	1	10	2	0	0
.............................................................TTTTGATTGTTGCTCGGAAAGC.....................................................................................................	22	1	1	14.00	14	9	0	3	1	1	0
.............................................................TTTTGATTGTTGCTCAGAATGCC....................................................................................................	23	1	1	13.00	13	2	10	1	0	0	0
.............................................................TTTTGATTGTTGCTCATAAAG......................................................................................................	21	1	1	13.00	13	4	0	7	2	0	0
.............................................................TTTTGATTGTTGCTCCGAAAGCC....................................................................................................	23	1	1	12.00	12	1	0	4	6	1	0
.............................................................TTTTGATTGTTGCTCACAAAGC.....................................................................................................	22	1	1	12.00	12	2	0	7	3	0	0
...............................................................TTGATTGTTGCTCAGAAAGC.....................................................................................................	20	0	1	12.00	12	11	1	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAGAGCC....................................................................................................	23	1	1	11.00	11	4	2	5	0	0	0
..............................................................TTTGATTGTTGCTCAGAAAG......................................................................................................	20	0	1	11.00	11	8	0	1	0	0	2
.............................................................TTTTGATTGTCGCTCAGAAAGCC....................................................................................................	23	1	1	11.00	11	5	5	1	0	0	0
.............................................................TTTTGATTGTTGTTCAGAAAGCC....................................................................................................	23	1	1	11.00	11	4	3	3	1	0	0
.............................................................TTTTGATTGTTGCTCAGAGAGC.....................................................................................................	22	1	1	11.00	11	9	0	2	0	0	0
.............................................................TTTTAATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	11.00	11	10	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCCC...................................................................................................	24	0	1	10.00	10	0	7	1	0	2	0
.............................................................TTTTGATTGTTACTCAGAAAGC.....................................................................................................	22	1	1	10.00	10	5	2	1	1	1	0
.............................................................TTTTGATTGTTGCTCAGAAGGC.....................................................................................................	22	1	1	10.00	10	8	1	1	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	10.00	10	4	2	3	1	0	0
.............................................................TCTTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	10.00	10	8	1	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACGCC....................................................................................................	23	1	1	10.00	10	1	1	8	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCTT...................................................................................................	24	2	1	9.00	9	6	0	2	0	1	0
.......................................................................................................CTTTCGAGCAATAATTGAAAC............................................................	21	0	1	9.00	9	1	3	2	0	3	0
.............................................................TTTTGATTTTTGCTCAGAAAGC.....................................................................................................	22	1	1	9.00	9	5	0	0	4	0	0
.............................................................TTTTGGTTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	9.00	9	4	1	2	2	0	0
...............................................................TTTATTGTTGCTCAGAAAGC.....................................................................................................	20	1	1	9.00	9	9	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACGC.....................................................................................................	22	1	1	9.00	9	0	0	8	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGAA....................................................................................................	23	2	1	9.00	9	8	0	1	0	0	0
.............................................................TTTTGATTGTTTCTCATAAAGCC....................................................................................................	23	2	1	9.00	9	3	0	1	5	0	0
.............................................................TTTTGATTGTCGCTCAGAAAGC.....................................................................................................	22	1	1	9.00	9	7	0	2	0	0	0
.............................................................TTTTGATCGTTGCTCAGAAAGC.....................................................................................................	22	1	1	8.00	8	6	2	0	0	0	0
.............................................................TATTGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	8.00	8	0	7	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAGC......................................................................................................	21	2	1	8.00	8	8	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCG....................................................................................................	23	1	1	8.00	8	6	1	1	0	0	0
.............................................................TTTTGATTGTTGCTAAGAAAG......................................................................................................	21	1	1	8.00	8	8	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAAAAAGC.....................................................................................................	22	1	1	8.00	8	6	2	0	0	0	0
.............................................................TTTTGATTGTTGCCCAGAAAGC.....................................................................................................	22	1	1	8.00	8	6	0	1	1	0	0
.............................................................TTTTGATTCTTGCTCAGAAAGCC....................................................................................................	23	1	1	8.00	8	3	4	0	1	0	0
.............................................................TTTGGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	8.00	8	1	3	4	0	0	0
.............................................................TTTTGATTGTTGCTCAGACAGCC....................................................................................................	23	1	1	8.00	8	2	0	3	3	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGAC....................................................................................................	23	2	1	8.00	8	0	8	0	0	0	0
............................................................CTTTTGATTGTTGCTCAGAAAGCC....................................................................................................	24	1	1	7.00	7	0	7	0	0	0	0
.............................................................TTTTGATTGTTGCTTAGAAAGC.....................................................................................................	22	1	1	7.00	7	3	1	2	1	0	0
.............................................................TTTTGATTGTTGCTCAGAGAG......................................................................................................	21	1	1	7.00	7	4	0	3	0	0	0
.............................................................TTTTGCTTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	7.00	7	2	0	4	1	0	0
.............................................................TTTTGATTGTTGCTCTGAAAGC.....................................................................................................	22	1	1	7.00	7	4	0	2	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAATCCT...................................................................................................	24	2	1	7.00	7	7	0	0	0	0	0
.............................................................TTTTGTTTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	7.00	7	1	3	3	0	0	0
.............................................................TTTTGATTGTTGCTCTGAAAGCC....................................................................................................	23	1	1	7.00	7	0	2	5	0	0	0
.............................................................TGTAGATTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	7.00	7	0	7	0	0	0	0
.............................................................TTTTGATCGTTGCTCAGAAAGCC....................................................................................................	23	1	1	7.00	7	3	1	2	1	0	0
.............................................................TTTTGATGGTTGCTCAGAAAGCC....................................................................................................	23	1	1	6.00	6	0	0	5	1	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGA.....................................................................................................	22	2	1	6.00	6	5	0	0	0	1	0
.............................................................TTTTCATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	6.00	6	2	2	0	1	0	1
..............................................................TTTTATTGTTGCTCAGAAAGCC....................................................................................................	22	1	1	6.00	6	3	3	0	0	0	0
.............................................................TTTTTATTGTTGCTCAGAAAG......................................................................................................	21	1	1	6.00	6	6	0	0	0	0	0
.............................................................TTTTGATTGTTGCTTAGAAAGCC....................................................................................................	23	1	1	6.00	6	3	1	1	1	0	0
.............................................................TTTTGATTGTTGGTCAGAAAGCC....................................................................................................	23	1	1	6.00	6	3	1	1	0	1	0
.............................................................TTTTGATTGTTGCTCCGAAAGC.....................................................................................................	22	1	1	6.00	6	1	0	4	1	0	0
.............................................................TGTGGATTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	6.00	6	0	5	1	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	6.00	6	3	1	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGGAAGC.....................................................................................................	22	1	1	6.00	6	5	0	1	0	0	0
.............................................................TGTCGATTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	6.00	6	0	6	0	0	0	0
.............................................................TTTTGATTGTTGCTCATAAATCC....................................................................................................	23	2	1	6.00	6	2	0	0	4	0	0
.............................................................TTTTGATTGTTCCTCAGAAAG......................................................................................................	21	1	1	6.00	6	3	0	3	0	0	0
.............................................................TTTTGACTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	6.00	6	6	0	0	0	0	0
.......................................................................................................CTCTCGAGCAATAATTGAAACC...........................................................	22	1	1	5.00	5	0	5	0	0	0	0
.............................................................TTTTGATTGTGGCTCAGAAAGCC....................................................................................................	23	1	1	5.00	5	1	0	3	1	0	0
.............................................................GTTTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	5.00	5	2	1	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAC......................................................................................................	21	1	1	5.00	5	3	0	2	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	5.00	5	0	4	1	0	0	0
.............................................................TTTTAATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	5.00	5	3	0	1	0	1	0
.............................................................TTTTGATTGATGCTCAGAAAGCC....................................................................................................	23	1	1	5.00	5	3	1	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAG.......................................................................................................	20	1	1	5.00	5	4	0	1	0	0	0
.............................................................TTTAGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	5.00	5	1	4	0	0	0	0
.............................................................TTTTGATTCTTGCTCAGAAAGC.....................................................................................................	22	1	1	5.00	5	3	0	0	1	0	1
.............................................................TTTTGATTGTTGCTCAGACAG......................................................................................................	21	1	1	5.00	5	0	0	5	0	0	0
.............................................................TTTTGATTGTTGCTCAGAATG......................................................................................................	21	1	1	5.00	5	1	0	4	0	0	0
........................................................................................................TTTCGAGCAATAATTGAAACC...........................................................	21	0	1	5.00	5	0	4	1	0	0	0
.............................................................TTTTGATTGTTGCTCACAAAG......................................................................................................	21	1	1	5.00	5	4	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAGCC.....................................................................................................	22	2	1	5.00	5	3	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCCGAAAG......................................................................................................	21	1	1	5.00	5	2	0	3	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAGG......................................................................................................	21	1	1	5.00	5	3	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGTAAGCC....................................................................................................	23	1	1	5.00	5	3	0	2	0	0	0
.............................................................TTTTGATTGTTGATAAGAAAGCC....................................................................................................	23	2	1	4.00	4	2	2	0	0	0	0
.............................................................TTTTGATTGTTGTTCAGAAAGC.....................................................................................................	22	1	1	4.00	4	3	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGATAGCC....................................................................................................	23	1	1	4.00	4	4	0	0	0	0	0
.............................................................TTTTGATTGTTGCTGAGAAAGCC....................................................................................................	23	1	1	4.00	4	1	2	1	0	0	0
.............................................................TTTTGATTGTTGCTCAAAAAG......................................................................................................	21	1	1	4.00	4	3	0	1	0	0	0
............................................................ATTTTGATTGTTGCTCAGAAAGCC....................................................................................................	24	0	1	4.00	4	2	2	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAAAGCA....................................................................................................	23	2	1	4.00	4	3	0	1	0	0	0
.................................................................GATTGTTGCTCAGAAAGCC....................................................................................................	19	0	1	4.00	4	2	2	0	0	0	0
..............................................................TTTTATTGTTGCTCAGAAAGC.....................................................................................................	21	1	1	4.00	4	4	0	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAAAGA.....................................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
............................................................CGTTTGATTGTTGCTCAGAAAGCC....................................................................................................	24	2	1	4.00	4	0	4	0	0	0	0
...............................................................TTTATTGTTGCTCAGAAAGCC....................................................................................................	21	1	1	4.00	4	3	1	0	0	0	0
.............................................................TTTTGCTTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	4.00	4	2	0	1	1	0	0
.............................................................TTTTGATTGTTGCTAAGAAAGAC....................................................................................................	23	2	1	4.00	4	4	0	0	0	0	0
.............................................................TTTTGATTTTTTCTCAGAAAGCC....................................................................................................	23	2	1	4.00	4	1	0	2	1	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGCCT...................................................................................................	24	2	1	4.00	4	3	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGCAAGC.....................................................................................................	22	1	1	4.00	4	1	0	2	1	0	0
.............................................................TTTTGATTGCTGCTCAGAAAG......................................................................................................	21	1	1	4.00	4	2	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACT......................................................................................................	21	2	1	4.00	4	1	0	3	0	0	0
.............................................................TTTTGATTGTAGCTCAGAAAGCC....................................................................................................	23	1	1	4.00	4	1	0	1	0	2	0
.............................................................TTTTGATTGTTGCTCAGAAT.......................................................................................................	20	1	1	4.00	4	3	0	1	0	0	0
.............................................................TTTTGAGTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	4.00	4	0	2	2	0	0	0
.............................................................TGTTGATTGTTGATCAGAAAGCC....................................................................................................	23	2	1	4.00	4	0	3	1	0	0	0
.............................................................TTTGGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	4.00	4	1	0	3	0	0	0
.............................................................TTTTGACTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	4.00	4	4	0	0	0	0	0
.............................................................TTTTGATTGTTGTTCAGAAAG......................................................................................................	21	1	1	4.00	4	1	0	3	0	0	0
.............................................................TTTTGATTGGTGCTCAGAAAGC.....................................................................................................	22	1	1	4.00	4	1	0	3	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGGC....................................................................................................	23	1	1	4.00	4	1	2	1	0	0	0
.............................................................TTATGATTGTTGCTCAGAAAGCC....................................................................................................	23	1	1	4.00	4	3	0	1	0	0	0
.......................................................................................................TTTTCGAGCAATAATTGAAACC...........................................................	22	1	1	3.00	3	0	2	1	0	0	0
.............................................................TTTTGATTTTTGCTCAGAAAG......................................................................................................	21	1	1	3.00	3	1	0	1	1	0	0
.............................................................TTATGATTGTTGCTCAGAAAGCA....................................................................................................	23	2	1	3.00	3	0	0	3	0	0	0
.............................................................ATTTGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	3.00	3	1	0	2	0	0	0
.............................................................TTTTTATTGTTGCTCAGAAATCC....................................................................................................	23	2	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAACCT...................................................................................................	24	2	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGGTTGTTGCTCAGAAAG......................................................................................................	21	1	1	3.00	3	3	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAATGCC....................................................................................................	23	2	1	3.00	3	0	3	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAAAGAC....................................................................................................	23	2	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAT........................................................................................................	19	1	2	3.00	6	2	0	4	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGAC....................................................................................................	23	2	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGATTGTTGCTTAGAAAG......................................................................................................	21	1	1	3.00	3	3	0	0	0	0	0
.............................................................TCTTGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGATTGTGGCTCAGAAAGC.....................................................................................................	22	1	1	3.00	3	1	0	2	0	0	0
.............................................................TTTTGATTGTTGCGCAGAAAGCC....................................................................................................	23	1	1	3.00	3	0	0	3	0	0	0
.............................................................ATTTGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	3.00	3	1	1	1	0	0	0
.............................................................TTTTGATTGTTGCTCACAAATCC....................................................................................................	23	2	1	3.00	3	0	0	2	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCAA...................................................................................................	24	2	1	3.00	3	3	0	0	0	0	0
.............................................................TTGTGATTGGTGCTCAGAAAGCC....................................................................................................	23	2	1	3.00	3	0	0	3	0	0	0
.............................................................TTTTGTTTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	3.00	3	1	0	1	1	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGAC....................................................................................................	23	2	1	3.00	3	0	3	0	0	0	0
.............................................................TTTTGATTGTTCCTCAAAAAGCC....................................................................................................	23	2	1	3.00	3	0	0	3	0	0	0
.............................................................TTTTGATTATTGCTCAGAAAGC.....................................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGGAAG......................................................................................................	21	1	1	3.00	3	1	0	1	0	1	0
.............................................................TTTTGATAGTTGCTCAGAAAGCC....................................................................................................	23	1	1	3.00	3	2	1	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACCCT...................................................................................................	24	2	1	3.00	3	3	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGCCT...................................................................................................	24	2	1	3.00	3	0	3	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGCAAG......................................................................................................	21	1	1	3.00	3	0	0	3	0	0	0
.............................................................TGTTTATTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	3.00	3	0	3	0	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGCA....................................................................................................	23	2	1	3.00	3	2	0	1	0	0	0
........................................................................................................TGTCGAGCAATAATTGAAACC...........................................................	21	1	1	3.00	3	0	3	0	0	0	0
.............................................................TGTTGATTGTTCCTCAGAAAGCC....................................................................................................	23	2	1	3.00	3	0	3	0	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGT.....................................................................................................	22	2	1	3.00	3	3	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGT.........................................................................................................	18	1	3	2.67	8	4	0	4	0	0	0
.............................................................TTTTGATTTTTGCTCAGAAATC.....................................................................................................	22	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTTTTGCTCAGACAGCC....................................................................................................	23	2	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTGATGCTCACAAAGCC....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTAGCTCAGAAAGC.....................................................................................................	22	1	1	2.00	2	1	0	0	1	0	0
...................................................................TTGTTGCTCAGAAAGC.....................................................................................................	16	0	1	2.00	2	0	0	2	0	0	0
.............................................................TTATGATTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGCA....................................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTTCTCATAAAG......................................................................................................	21	2	1	2.00	2	0	0	1	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAATCA....................................................................................................	23	2	1	2.00	2	1	0	0	1	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGCT....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGACAGC.....................................................................................................	22	1	1	2.00	2	1	0	0	1	0	0
.............................................................TTTTGATTTTTGCTCCGAAAGCC....................................................................................................	23	2	1	2.00	2	0	0	0	2	0	0
.......................................................................................................CTTTCGAGCAATAATTGA...............................................................	18	0	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAACC....................................................................................................	23	2	1	2.00	2	0	0	1	1	0	0
.............................................................TTTTGATTGTTGCTAAGAAAGA.....................................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCCTT..................................................................................................	25	1	1	2.00	2	2	0	0	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGTATGCC....................................................................................................	23	2	1	2.00	2	0	0	1	1	0	0
.............................................................TGTTGATTGTTGCTAAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACCT....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCACAAAGCA....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TGTTGATTGTTTCTCAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	1	1	0	0	0
.............................................................TTTTGATGGTTGCTCAGAAAG......................................................................................................	21	1	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGTAAGC.....................................................................................................	22	1	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCATAAAGCCT...................................................................................................	24	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACG......................................................................................................	21	1	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTGCGGCTCAGAAAGC.....................................................................................................	22	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTTCTCACAAAGCC....................................................................................................	23	2	1	2.00	2	0	0	1	1	0	0
.............................................................TTTTGATTCTTGCTCATAAAGCC....................................................................................................	23	2	1	2.00	2	1	0	0	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGG.....................................................................................................	22	1	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAAA.....................................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCACAGAAAGCC....................................................................................................	23	1	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCATGAAGC.....................................................................................................	22	2	1	2.00	2	0	0	1	1	0	0
.............................................................TTCTGATTGTTGATCAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTCATCAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	1	0	1	0	0
.............................................................TTTTGATTGTTGATCAGAAACCC....................................................................................................	23	2	1	2.00	2	1	0	1	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGA.....................................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
.............................................................TGCTGATTGTTGCTCAGAAAGC.....................................................................................................	22	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAA........................................................................................................	19	1	1	2.00	2	1	0	1	0	0	0
.............................................................TTTGGATTGGTGCTCAGAAAGC.....................................................................................................	22	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCATCAAGC.....................................................................................................	22	2	1	2.00	2	0	0	0	2	0	0
.............................................................TTTTGATTGTTGGTCAGAAAG......................................................................................................	21	1	1	2.00	2	0	0	2	0	0	0
.............................................................TGTTGATTGTTGCTCAAAAAGCC....................................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAGAGCC....................................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAAGCC...................................................................................................	24	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTTTTGCTCAGAAATCC....................................................................................................	23	2	1	2.00	2	1	0	0	1	0	0
.............................................................TTTTGAATGTTGCTCAGAAAGCC....................................................................................................	23	1	1	2.00	2	1	1	0	0	0	0
............................................................CTTTTGATTGTTGCTCAGAAAGC.....................................................................................................	23	1	1	2.00	2	0	1	0	1	0	0
.......................................................................................................CTTTCTAGCAATAATTGAAACC...........................................................	22	1	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACTC.....................................................................................................	22	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTAGATTGTTGCTCAGACAGCC....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAATCT....................................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTTATTGTTGCTCAGAAAGCCT...................................................................................................	24	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGCG....................................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCATCACGCC....................................................................................................	23	3	1	2.00	2	0	0	0	2	0	0
.......................................................................................................CGTTCGAGCACTAATTGAAACC...........................................................	22	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAAAGCCT...................................................................................................	24	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGGTTGTTGCTCAGAAAGCCT...................................................................................................	24	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCGGAAACCC....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGACT...................................................................................................	24	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGTTCCTCAGAAATCC....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTACTCAGAAAG......................................................................................................	21	1	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGATTGATGCTCAGAAAGA.....................................................................................................	22	2	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTGATGCTCAGAAAG......................................................................................................	21	1	1	2.00	2	1	0	1	0	0	0
.............................................................TGTTGATCGTTGCTCAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAGA.......................................................................................................	20	1	1	2.00	2	1	0	1	0	0	0
..............................................................TTTGATTGTTGCTCAGAAA.......................................................................................................	19	0	1	2.00	2	1	0	0	0	0	1
.............................................................TTTTGATTGTTGCTCAGAAGGCCT...................................................................................................	24	2	1	2.00	2	2	0	0	0	0	0
.............................................................TTGTGATTGTTTCTCAGAAAGCC....................................................................................................	23	2	1	2.00	2	1	0	1	0	0	0
.............................................................TTTTGATTATTGCTCAGAAAG......................................................................................................	21	1	1	2.00	2	1	0	1	0	0	0
.............................................................TTTAGATTGTTGCTCAGAAAG......................................................................................................	21	1	1	2.00	2	2	0	0	0	0	0
.............................................................TTTTGAGTGTTGCTCAGAAAGC.....................................................................................................	22	1	1	2.00	2	0	0	2	0	0	0
.............................................................TGGTGATTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.........................................................................................................TGCGAGCAATAATTGAAACC...........................................................	20	1	1	2.00	2	0	2	0	0	0	0
.............................................................TTGTGGTTGTTGCTCAGAAAGCC....................................................................................................	23	2	1	2.00	2	0	0	2	0	0	0
.............................................................TTTTGATTGTTGCTCAAAAGCC.....................................................................................................	22	3	5	1.40	7	3	4	0	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAT......................................................................................................	21	2	3	1.33	4	1	0	2	0	1	0
.......................................................................................................CTGTCGAGCAATAATTGAAACC...........................................................	22	1	1	1.00	1	0	0	1	0	0	0
.............................................................TTTTGGGTGTTGATCAGAAAGCC....................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAACA....................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
.............................................................TTTGGGTTGTTGCTCAAAAAGCC....................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCTAT..................................................................................................	25	2	1	1.00	1	0	0	0	0	1	0
.............................................................TTTTGATTGTGGCTCACAAAGC.....................................................................................................	22	2	1	1.00	1	0	0	1	0	0	0
.............................................................TTTTGATTGGTGCTCAGAAATCC....................................................................................................	23	2	1	1.00	1	0	0	1	0	0	0

TAGAAACCGACATTATCAAACCGAAAAAATATATTCTCGAGGATTTACCTGTGAATATATTAAAACTAACAACGAGTCTTTCGGGAATATTTAATAATCGACCGAAAGCTCGTTATTAACTTTGGTTTATTCACTAGGACTGTTGTAAAATTCACACTTTATAAGAAAATTTCCCACTCATTTA ******************************************.((((((((((....(((((((((((((((.(((((((.(((........)))..))))))))))))))))))))))....))))))).)))..********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V106 head
.......................................................................................................................CTGGGGTTTATTCACTAG...............................................	18	2	4	0.25	1	1	0
..............................................................................TTTCGGGAATAGTCAATA........................................................................................	18	2	8	0.13	1	0	1
....................CCGAAAAAATATTTTCAAGA................................................................................................................................................	20	3	20	0.05	1	1	0
.......CGACTTTATCAAATCGACAA.............................................................................................................................................................	20	3	20	0.05	1	1	0

Species	Coordinate	ID	Type	Alignment
droAna3	scaffold_13337:18585434-18585617 -	dan-mir-315	Known_mirbase	A---------TCTTTGGCTG-T-----AAT---------AGTT--TGGCT-TTTTT--ATATA--AGAGCT--CCTA--AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAAA-----TTATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACAT---------------------------------------------TTT--AAGTGTGAAA--------------T-----ATTCTTTT-----AAAGGGTGAGTAAA---T
droBip1	scf7180000396741:1773699-1773882 -			A---------TCTTTGGCTG-A-----AAT---------TGGT--TGGCT-TTTTT--ATATA--AGAGAT--CCTA--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATATA-----TTTAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACAT---------------------------------------------TTT--AATTGTGAAA--------------A-----ATAACTAG-----AAAGGGTAAGCATA---T
droKik1	scf7180000302248:117488-117664 -			A--------TCCTTTGGCTA-A------------------ATTTTTGG----TTTT--ATATA--AGAGTT--CCTGGAAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TAT-----TTATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGT---------------------------------------------TAT-GAAGTGTGATTTA-------------------GTTG-TT-----AAAGGGTAAGTG------
droFic1	scf7180000453824:210564-210748 +			GTGT--AA-CCCTTTGGCTAAA------------------GTT--TGGTT-CTTTT--ATATA--AGAGCT--CCTG--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTAC-----TTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGA---------------------------------------------AA-------GTGAAT--------------TTTGATAC--TCTT-----ATATGGTAAGTGAA---C
droEle1	scf7180000490993:1762431-1762605 +			--------------TGGCTA-A------------------GTT--TGGTT-GTTTT--ATATA--AGAGTT--CCTGG-AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTAT-----TTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGA---------------------------------------------AT-------GTGATTTA----------ATT-----AGACTTCA-----AAATGGTAAGTGAA---C
droRho1	scf7180000758207:1439-1610 +			C---------CTTTTGGCTA-A------------------GTT--TGGTT-GTTTT--ATATA--AGAGTT--TCTG--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATAT-----TTA-CAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGT---------------------------------------------TTT------GTGATTTA----------A------------ACG-----AGATGGTAAGTGAA---C
droBia1	scf7180000302529:650405-650535 -			A---------GTTTCGGC------------------------------------TT--ATATA--AGAGCT--CCTC--AGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTAT-----TTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGT---------------------------------------------TT----------------------------------------------------------------
droTak1	scf7180000415184:198549-198728 -			A--------CCTTTTGGCTA-A------------------GTT--TGGTT-ACTTT--ATATA--AGAGCT--CCTG--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTAC-----TTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGA---------------------------------------------TTG-------TTAGTTA----------ATT-----GCGTCTTA-----AGATGGTAAGTACA---C
droEug1	scf7180000409471:636120-636304 -			GTGTTTTACCCTTTTGGCTA-A------------------GTTTTTGG----TTTT--ATATA--AGAGCT--CCAA--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTAT-----TTAACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGT---------------------------------------------TTG-------TGATTTA----------AAT-----ACATTCTG-----TGATGGTAAGTGA-----
dm3	chr3L:18854025-18854168 +	dme-mir-315	Known_mirbase	G---------CCATTGGCTA-A------------------GTT--TGGCT-GTTTT--ATATA--AGAGTT--CCTT--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTGT-----TTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGC---------------------------------------------T-----------------------------------------------------------------
droSim2	3l:18475636-18475815 +	dsi-mir-315	Known_mirbase	G---------CCTTTGGCTA-A------------------GTT--TGGCTGTTTTT--ATATA--AGAGTT--CCTT--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTGT-----TTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGC---------------------------------------------TGA--A-----GATTTT----------ACT-----GCATTTCG-----TTTTGGTAAGTTAA---G
droSec2	scaffold_19:820196-820349 +	dse-mir-315	Known_mirbase	G---------CCTTTGGCTA-A------------------GTT--TGGCT-GTTTT--ATATA--AGAGTT--CCTT--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-------TACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGC---------------------------------------------TGA--A-----GATTTG-------------------------------------------AA---A
droYak3	v2_chr3L_random_055:2844-3003 +	dya-mir-315-2	Known_mirbase	GTGTT-AA-CCCTTTGGCTA-A------------------GTT--TGGTT-TTTTT--ATATA--AGAGTT--CC-G--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTAT-----TTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACAT---------------------------------------------TGA--A-----GATTTG----------A--------------------------------------
droEre2	scaffold_4784:18670564-18670741 +	der-mir-315	Known_mirbase	C---------CCTTTGGCTA-A------------------GTT--TGGTT-GTTTT--ATATA--AGAGTT--CCTA--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTAT-----CTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGC---------------------------------------------TGA--A-----GATTTG----------ACT-----GCATTTCG-----TGTTGGTAAGTAAA---C
dp5	XR_group6:4103802-4103963 -	dps-mir-315	Known_mirbase	AT-------TCAATTGTGAA-A------------------GT------------------ATA-------------A--GCCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAAT-----TAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACAT---------------------------------------------TTT--A-GTGTGAAA--------------T-----ACTTGACT-----CAAAGGTAAGTGAAAAAT
droPer2	scaffold_9:2393014-2393171 -	dpe-mir-315	Known_mirbase	AT-------TCCATTGTGAA-A------------------GTA--TA-----------------------------A--ACCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAAT-----TAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACAT---------------------------------------------TTT--A-GTGTGAAA--------------T-----ACTTGACT-----CAAAGGTAAGTGAA----
droWil2	scf2_1100000004768:104797-104986 +	dwi-mir-315	Known_mirbase	T---------CATTTGGTAA-A-----CTGAATGTTTGTGAAT--TGGTT-TGCTT--ATTT--------G--CCCA--TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTAC----TTTATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACAG---------------------------------------------TTTTCAACC-------ATAGAAATCCAACT-----A------------TTTTGAAACGAAAC---T
droVir3	scaffold_13049:18083540-18083719 -	dvi-mir-315a	Known_mirbase	A---------CATTTT-CCA-AGTTACAA-----------CTC--CATTT-CCTTCCTACCTC----------ACAA--AACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CAT-----TCAATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGT---------------------------------------------TTACCT-------AA--------------T-----ATTATTATCATGGTCCAGGTAAGTACC---T
droMoj3	scaffold_6680:23648497-23648671 -	dmo-mir-315	Known_mirbase	A---------CCGTCAGCC---------------------------------------------------------A--AACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAA--TTTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCAAAAATTTCAAAAAAATTAAAATACAAAATTAACTACAAT------------------------------------------------TGAGGTAAGTAAA---T
droGri2	scaffold_15110:24135484-24135634 -	dgr-mir-315	Known_mirbase	A---------TTTATGGTTA-C-----TA-----------GTG--TGTTC-TCCTGATGCCTGAAACAGCCAACTAC--TATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CAC-----TTGACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAA---------------------------------------------TT----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

A---------TCTTTGGCTG-T-----AAT---------AGTT--TGGCT-TTTTT--ATATA--AGAGCT--CCTA--AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAAA-----TTATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACAT---------------------------------------------TTT--AAGTGTGAAA--------------T-----ATTCTTTT-----AAAGGGTGAGTAAA---T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	14944.00	14944	59	5369	476	1980	136	6924
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	7154.00	7154	27	458	207	894	58	5510
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1857.00	1857	15	20	17	568	38	1199
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	492.00	492	2	16	12	42	3	417
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	245.00	245	0	0	3	37	3	202
...............................................................................................................................................CTTTCGAGCAATAATTGAAACC.....................................................................................................................................	22	1	244.00	244	13	178	0	23	2	28
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	186.00	186	0	1	0	38	6	141
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	179.00	179	5	1	3	54	4	112
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	127.00	127	0	1	0	40	9	77
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	91.00	91	0	0	0	56	0	35
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	84.00	84	1	3	0	22	1	57
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	68.00	68	0	4	3	16	1	44
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	64.00	64	5	19	0	0	0	40
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	37.00	37	0	0	0	9	0	28
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	29.00	29	1	2	0	2	0	24
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	18.00	18	0	0	0	2	0	16
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	16
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	16.00	16	0	5	0	0	0	11
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	12.00	12	0	1	0	0	0	11
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	11.00	11	2	0	0	1	0	8
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	10.00	10	0	7	0	1	2	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	9.00	9	0	0	0	2	1	6
...............................................................................................................................................CTTTCGAGCAATAATTGAAAC......................................................................................................................................	21	1	9.00	9	0	3	0	2	3	1
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	9.00	9	0	0	0	1	0	8
................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	8
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	8.00	8	0	1	0	1	0	6
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	5.00	5	0	0	0	2	0	3
................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	5.00	5	0	0	0	1	0	4
................................................................................................................................................TTTCGAGCAATAATTGAAACC.....................................................................................................................................	21	1	5.00	5	0	4	0	1	0	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	4.00	4	0	2	0	0	0	2
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	4.00	4	0	2	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAACT.....................................................................................................................................................................................	21	1	4.00	4	0	0	0	3	0	1
................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	4.00	4	0	0	0	1	0	3
................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	2	3.00	6	0	0	0	4	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	3	2.67	8	0	0	0	4	0	4
......................................................................................................TTGTTGCTCAGAAAGC....................................................................................................................................................................................	16	1	2.00	2	0	0	0	2	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGA.........................................................................................................................................	18	1	2.00	2	0	0	0	1	0	1
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAAA....................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1

droBip1

A---------TCTTTGGCTG-A-----AAT---------TGGT--TGGCT-TTTTT--ATATA--AGAGAT--CCTA--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATATA-----TTTAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACAT---------------------------------------------TTT--AATTGTGAAA--------------A-----ATAACTAG-----AAAGGGTAAGCATA---T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A--------TCCTTTGGCTA-A------------------ATTTTTGG----TTTT--ATATA--AGAGTT--CCTGGAAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TAT-----TTATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGT---------------------------------------------TAT-GAAGTGTGATTTA-------------------GTTG-TT-----AAAGGGTAAGTG------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTGT--AA-CCCTTTGGCTAAA------------------GTT--TGGTT-CTTTT--ATATA--AGAGCT--CCTG--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTAC-----TTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGA---------------------------------------------AA-------GTGAAT--------------TTTGATAC--TCTT-----ATATGGTAAGTGAA---C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------------TGGCTA-A------------------GTT--TGGTT-GTTTT--ATATA--AGAGTT--CCTGG-AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTAT-----TTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGA---------------------------------------------AT-------GTGATTTA----------ATT-----AGACTTCA-----AAATGGTAAGTGAA---C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C---------CTTTTGGCTA-A------------------GTT--TGGTT-GTTTT--ATATA--AGAGTT--TCTG--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATAT-----TTA-CAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGT---------------------------------------------TTT------GTGATTTA----------A------------ACG-----AGATGGTAAGTGAA---C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A---------GTTTCGGC------------------------------------TT--ATATA--AGAGCT--CCTC--AGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTAT-----TTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGT---------------------------------------------TT----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A--------CCTTTTGGCTA-A------------------GTT--TGGTT-ACTTT--ATATA--AGAGCT--CCTG--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTAC-----TTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGA---------------------------------------------TTG-------TTAGTTA----------ATT-----GCGTCTTA-----AGATGGTAAGTACA---C	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTGTTTTACCCTTTTGGCTA-A------------------GTTTTTGG----TTTT--ATATA--AGAGCT--CCAA--AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTAT-----TTAACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGT---------------------------------------------TTG-------TGATTTA----------AAT-----ACATTCTG-----TGATGGTAAGTGA-----	Size	Hit Count	Total Norm	Total
No Reads

dm3

G---------CCATTGGCTA-A------------------GTT--TGGCT-GTTTT--ATATA--AGAGTT--CCTT--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTGT-----TTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGC---------------------------------------------T-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	106956.00	106956	0	0	0	0	31	0	0	0	29	44	13	134	10	0	3	1	1	2	14	0	0	0	0	2	0	5	4	48	43	152	763	837	5	8	0	0	0	0	0	0	1	0	3	0	1	2	0	0	3	1	1	2	1	0	0	0	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	6	4	7	16	7	2	449	346	3	0	0	13	14	58	57	0	345	72	2	6	33	63	112	295	724	1	2	0	11	5	5	5	2	423	146	181	0	14	38	431	650	7	537	7	430	488	2037	27	323	53	517	312	0	0	0	0	0	0	0	0	0	0	53	17	181	173	31	1	0	0	0	0	2	0	0	0	0	2	0	1	1	0	2	0	3	0	0	0	1425	1783	0	1476	121	55	1245	936	173	797	48	1551	547	2686	308	0	0	0	0	0	2440	73	16	54	11	0	0	0	47	1	79	4	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	22	0	28	1	3	97	3624	0	6	2	109	3	0	0	0	0	1	0	0	5486	3895	2	154	1758	64	1223	12	11	503	1806	17	289	38	134	3	8	24	2636	16	4	6	16	46	21	18	79	24	42	12	40	10	3	0	24	83	2	6	2	4	0	2	3	22	7	6	42	3514	5024	3939	4696	996	28518	296	129	21	5	1	8	1	3	634	20	530	753	3	26	0	9	5	71	956	103	2	8	20	16	37	11	34	2	5	5482	15	72	332	99	9	72	33	48	44	42	0
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	28689.00	28689	0	0	0	0	12	0	0	0	0	14	4	22	3	0	1	0	0	0	4	0	0	0	0	2	0	1	1	6	15	29	314	344	6	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	6	4	2	8	0	0	11	18	0	0	0	1	0	6	14	0	56	26	2	1	8	9	24	45	235	0	0	0	3	0	0	0	0	80	7	15	0	4	12	147	301	1	280	0	152	214	852	14	123	21	167	152	0	0	0	0	0	0	0	0	0	0	10	4	22	11	0	0	0	0	1	0	2	0	0	0	0	2	0	0	1	0	5	0	0	0	0	0	538	608	0	501	18	9	367	380	34	342	17	552	101	1151	102	0	0	0	1	0	727	11	5	17	1	0	0	0	6	1	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	10	2	6	1	3	32	1255	0	4	2	30	1	0	0	0	0	2	0	0	572	426	0	48	671	35	485	5	0	265	773	5	124	17	53	1	5	9	1243	3	1	1	4	9	15	3	35	5	8	3	5	2	1	0	4	13	3	0	0	0	1	2	2	6	0	0	7	1107	1652	1219	1407	48	3364	80	26	6	0	2	2	0	0	163	3	138	236	0	7	0	0	1	29	345	42	0	1	8	7	14	2	12	0	1	2893	12	32	102	13	2	30	21	34	18	16	0
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	15419.00	15419	0	0	0	0	11	0	0	0	0	4	1	17	2	0	1	0	0	3	2	0	0	0	0	5	0	1	1	4	2	15	269	253	3	0	8	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	8	1	0	1	4	0	0	0	2	1	4	15	0	40	65	1	1	6	7	20	25	239	0	0	0	5	0	0	0	1	32	2	7	0	0	0	95	14	2	24	0	42	19	42	0	88	8	118	81	0	0	0	0	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	0	2	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0	334	409	0	297	3	4	172	283	16	293	2	427	16	891	35	0	0	0	0	0	402	34	3	40	0	0	0	0	14	0	22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	10	1	14	0	4	13	479	0	0	0	9	2	0	0	0	0	0	0	0	247	196	0	25	363	14	78	1	2	92	217	0	57	2	9	0	2	2	310	3	0	0	3	2	5	0	16	3	2	4	2	4	0	0	1	12	0	4	0	3	0	2	0	5	0	1	8	973	1338	892	1301	11	980	55	32	0	3	0	1	0	3	207	3	117	177	0	8	0	2	2	7	144	16	0	1	4	4	7	0	7	0	0	1464	14	9	29	3	1	6	6	6	8	4	0
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................................................................................................TTTTGATTGTTGCTCAGAAC......................................................................................................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	3	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCATC.................................................................................................................................................................................	24	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSim2

G---------CCTTTGGCTA-A------------------GTT--TGGCTGTTTTT--ATATA--AGAGTT--CCTT--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTGT-----TTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGC---------------------------------------------TGA--A-----GATTTT----------ACT-----GCATTTCG-----TTTTGGTAAGTTAA---G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	479570.00	479570	180667	743	284447	83	0	40	864	81	2095	1826	23	8652	1	1	11	1	35
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	59709.00	59709	31932	134	23672	16	1	24	348	41	834	477	10	2182	3	0	7	2	26
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	12280.00	12280	8981	33	2530	7	0	9	93	12	236	115	11	229	0	1	3	1	19
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	11972.00	11972	5477	26	6314	1	0	0	2	1	1	10	0	140	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	1845.00	1845	1514	4	175	1	4	63	6	0	34	27	0	16	0	0	0	0	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	1134.00	1134	398	1	587	0	8	135	1	0	0	1	0	3	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	1064.00	1064	973	5	42	0	0	31	1	1	6	3	0	2	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	907.00	907	222	0	233	3	0	0	229	28	137	20	12	22	1	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAACC.....................................................................................................................................	22	1	851.00	851	232	0	205	2	12	386	0	0	0	0	1	13	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	828.00	828	433	1	297	0	0	0	33	2	26	10	0	26	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	656.00	656	503	1	129	0	0	0	0	0	1	2	0	20	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	570.00	570	488	2	29	1	1	25	0	1	15	6	0	2	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	420.00	420	403	3	11	0	0	0	1	1	0	0	0	0	1	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	405.00	405	147	0	232	12	0	0	0	0	1	2	0	11	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	354.00	354	136	0	217	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	186.00	186	146	0	15	0	0	0	11	1	5	2	2	4	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	174.00	174	94	0	78	1	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGA.........................................................................................................................................	18	1	167.00	167	1	0	0	0	4	161	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGAA........................................................................................................................................	19	1	141.00	141	0	0	0	0	4	137	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	1	140.00	140	136	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	84.00	84	56	0	24	0	0	1	0	0	0	1	0	1	0	0	0	0	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	78.00	78	40	0	34	0	0	0	0	0	1	0	0	3	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	75.00	75	59	0	5	0	0	0	1	0	1	0	0	9	0	0	0	0	0
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	69.00	69	26	0	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAA.......................................................................................................................................	20	1	64.00	64	0	0	0	0	2	62	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	2	44.00	88	86	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	42.00	42	41	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	38.00	38	32	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	35.00	35	11	0	23	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	33.00	33	17	0	14	0	0	0	0	0	1	0	0	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCAA.................................................................................................................................................................................	25	1	31.00	31	0	0	0	0	0	0	13	2	15	1	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	28.00	28	17	2	3	0	0	0	0	0	1	0	0	5	0	0	0	0	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	18.00	18	2	1	14	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	17.00	17	14	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	14.00	14	13	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	14.00	14	13	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	12.00	12	2	0	1	0	0	0	4	0	1	0	2	2	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCAAA................................................................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	5	0	5	1	0	0	0	0	0	0	0
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	11.00	11	4	0	4	0	0	0	0	0	0	1	1	1	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	10.00	10	6	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAAC......................................................................................................................................	21	1	10.00	10	2	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGC........................................................................................................................................................................................	18	1	10.00	10	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	10.00	10	2	0	4	0	0	0	0	0	2	1	0	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGATT......................................................................................................................................................................................	20	2	7.50	15	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAG.........................................................................................................................................................................................	17	1	7.00	7	0	0	0	0	0	0	1	0	1	2	0	0	0	0	1	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGCAAA.................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	1	0	6	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAC......................................................................................................................................................................................	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGACT......................................................................................................................................................................................	20	2	6.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	2	6.00	12	5	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0
.......................................................................................................................CTTATTGT-----TTACCAGTTGG...........................................................................................................................................................	19	1	5.00	5	0	0	2	0	0	0	0	0	0	1	0	2	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	22	1	5.00	5	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	5.00	5	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	5.00	5	4	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	5.00	5	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAATT.....................................................................................................................................................................................	21	2	4.50	9	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	4.00	4	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATT...........................................................................................................................................	16	1	4.00	4	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAACCA....................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGATC......................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	19	1	3.00	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................TTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	21	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

G---------CCTTTGGCTA-A------------------GTT--TGGCT-GTTTT--ATATA--AGAGTT--CCTT--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-------TACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGC---------------------------------------------TGA--A-----GATTTG-------------------------------------------AA---A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	53466.00	53466	113	183	38375	14795
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	13083.00	13083	33	75	7285	5690
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	3628.00	3628	9	58	1053	2508
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	907.00	907	2	5	634	266
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	334.00	334	10	2	287	35
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	290.00	290	3	1	66	220
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	262.00	262	5	0	37	220
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	167.00	167	0	1	109	57
...............................................................................................................................................CTTTCGAGCAATAATTGAAACC.....................................................................................................................................	22	1	165.00	165	14	2	86	63
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	164.00	164	0	3	15	146
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	137.00	137	0	3	71	63
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	118.00	118	1	0	10	107
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	115.00	115	0	0	14	101
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	85.00	85	2	0	72	11
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	61.00	61	0	2	12	47
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	45.00	45	0	0	37	8
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	37.00	37	0	1	23	13
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	16.00	16	1	0	12	3
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	15.00	15	1	1	1	12
................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	2	10.50	21	0	0	19	2
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	10.00	10	1	0	7	2
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	8.00	8	0	0	3	5
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	7.00	7	0	0	2	5
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	7.00	7	0	0	6	1
................................................................................................................................................TTTCGAGCAATAATTGAAACC.....................................................................................................................................	21	1	7.00	7	0	1	3	3
..............................................................................................AATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	25	1	5.00	5	0	0	3	2
.................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	4.00	4	0	0	3	1
................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	4.00	4	0	0	0	4
..................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	4.00	4	0	0	3	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	4.00	4	0	0	1	3
................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	3.00	3	0	0	0	3
................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	3.00	3	0	0	0	3
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	3.00	3	0	0	3	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	3.00	3	0	0	3	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAAC......................................................................................................................................	21	1	3.00	3	0	0	2	1
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	2	2.50	5	0	0	0	5
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	2.00	2	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	2.00	2	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	2.00	2	0	0	1	1
...............................................................................................................................................CTTTCGAGCAATAATTGAAACCA....................................................................................................................................	23	1	2.00	2	1	0	1	0
.....................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	2.00	2	0	0	0	2
.................................................................................................TTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	18	1	2.00	2	1	0	0	1
...............................................................................................................................................CTTTCGAGCAATAATTGAA........................................................................................................................................	19	1	2.00	2	0	0	1	1
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGC........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1

droYak3

GTGTT-AA-CCCTTTGGCTA-A------------------GTT--TGGTT-TTTTT--ATATA--AGAGTT--CC-G--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTAT-----TTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACAT---------------------------------------------TGA--A-----GATTTG----------A--------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	2	238056.50	476113	46916	28	418397	7617	714	2369	45	8	1	18	0
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	2	10712.50	21425	6941	4	12156	1536	193	565	9	0	0	21	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	2	2553.50	5107	2519	3	2344	163	14	61	3	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	2	1304.50	2609	1696	1	206	104	164	427	5	1	2	3	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAACC.....................................................................................................................................	22	2	1011.00	2022	37	7	1938	14	2	24	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	2	510.50	1021	221	0	789	5	1	5	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	2	459.50	919	40	4	868	6	1	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	2	192.50	385	104	0	229	21	1	30	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	2	170.00	340	250	1	10	5	19	53	1	1	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	2	119.50	239	8	0	225	2	2	2	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	2	110.50	221	109	0	54	20	4	34	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	2	103.00	206	15	0	190	0	0	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	2	98.50	197	169	0	1	0	10	17	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	2	89.50	179	100	0	35	17	6	21	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	2	68.50	137	100	2	5	1	10	19	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	2	65.00	130	48	1	46	2	8	24	1	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	2	48.50	97	94	0	1	0	1	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	2	33.50	67	65	0	2	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	2	18.00	36	13	0	20	2	0	1	0	0	0	0	0
................................................................................................................................................TTTCGAGCAATAATTGAAACC.....................................................................................................................................	21	2	16.00	32	0	0	31	0	0	1	0	0	0	0	0
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	2	11.00	22	7	0	14	0	0	1	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	2	10.00	20	5	0	4	2	1	8	0	0	0	0	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	2	8.50	17	0	1	15	0	0	1	0	0	0	0	0
.....................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	2	7.00	14	4	0	10	0	0	0	0	0	0	0	0
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	2	6.50	13	0	0	13	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	3	6.33	19	19	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	2	5.00	10	4	0	6	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	2	5.00	10	8	0	0	0	1	1	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	2	4.00	8	5	0	3	0	0	0	0	0	0	0	0

droEre2

C---------CCTTTGGCTA-A------------------GTT--TGGTT-GTTTT--ATATA--AGAGTT--CCTA--CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTAT-----CTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGC---------------------------------------------TGA--A-----GATTTG----------ACT-----GCATTTCG-----TGTTGGTAAGTAAA---C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	43176.00	43176	374	21515	1547	4020	89	15631	0
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	9235.00	9235	58	976	492	965	14	6730	0
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	3617.00	3617	19	23	338	125	25	3087	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	562.00	562	2	6	26	13	1	514	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	467.00	467	4	91	7	73	4	288	0
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	341.00	341	0	2	34	9	3	293	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAACC.....................................................................................................................................	22	1	309.00	309	14	176	14	4	5	96	0
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	245.00	245	0	2	26	2	3	212	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	218.00	218	1	8	4	6	0	199	0
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	148.00	148	0	0	1	1	0	146	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	128.00	128	39	29	7	4	2	47	0
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	122.00	122	0	1	9	4	0	108	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	107.00	107	1	3	15	9	2	77	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	95.00	95	0	13	0	1	1	80	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	43.00	43	0	31	3	4	0	5	0
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	31.00	31	5	2	1	1	0	22	0
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	30.00	30	3	13	0	0	0	14	0
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	30.00	30	1	0	1	0	0	28	0
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	23.00	23	1	1	8	2	0	11	0
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	20.00	20	0	0	4	0	0	16	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAAC......................................................................................................................................	21	1	15.00	15	1	1	2	1	1	9	0
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	11.00	11	0	0	0	1	0	10	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	11.00	11	2	0	0	1	0	8	0
...............................................................................................................................................CTTTCGAGCAATAATTGA.........................................................................................................................................	18	1	10.00	10	0	0	0	0	0	10	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	9.00	9	0	5	0	1	0	3	0
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	8	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	7.00	7	0	0	0	1	0	6	0
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	6.00	6	0	2	0	1	0	3	0
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	6.00	6	1	1	0	1	0	3	0
................................................................................................................................................TTTCGAGCAATAATTGAAACC.....................................................................................................................................	21	1	6.00	6	0	5	0	0	0	1	0
..................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	5.00	5	0	3	0	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	5	0
................................................................................................TTTTGATTGTTGCTCAGAAATA....................................................................................................................................................................................	22	1	5.00	5	0	1	0	0	0	4	0
...............................................................................................................................................CTTTCGAGCAATAATTGAA........................................................................................................................................	19	1	5.00	5	0	0	1	0	0	4	0
...............................................................................................................................................CTTTCGAGCAATAATTGAAA.......................................................................................................................................	20	1	5.00	5	0	0	1	0	1	3	0
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	4	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4	0
.................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3	0
................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3	0
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	3.00	3	0	0	1	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3	0
..............................................................................................AATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	2	0

dp5

AT-------TCAATTGTGAA-A------------------GT------------------ATA-------------A--GCCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAAT-----TAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACAT---------------------------------------------TTT--A-GTGTGAAA--------------T-----ACTTGACT-----CAAAGGTAAGTGAAAAAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	80302.00	80302	23	584	51781	4356	6602	1793	21	3	8	15131
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	16662.00	16662	5	142	2647	491	1872	663	6	5	4	10827
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1512.00	1512	1	40	47	16	203	397	12	0	2	794
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	488.00	488	1	5	116	18	70	28	0	0	0	250
...............................................................................................................................................CTTTCGAGCAATTATCAAAGCC.....................................................................................................................................	22	1	364.00	364	0	3	301	20	32	8	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	222.00	222	0	9	3	4	12	48	1	0	0	145
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	206.00	206	0	62	73	11	7	3	0	0	0	50
...............................................................................................TTTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	184.00	184	0	1	55	6	19	1	0	0	0	102
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	140.00	140	0	6	27	0	30	15	0	2	0	60
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	130.00	130	0	1	6	4	30	18	0	0	0	71
...............................................................................................TTTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	117.00	117	0	2	101	3	4	0	0	0	0	7
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	112.00	112	0	0	79	8	5	4	0	0	0	16
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	84.00	84	1	0	30	9	16	7	0	0	0	21
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	79.00	79	2	3	1	2	1	25	0	0	0	45
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	48.00	48	0	1	8	3	8	13	4	0	0	11
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	43.00	43	0	10	1	1	0	1	0	0	0	30
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	40.00	40	1	0	0	0	1	8	0	0	0	30
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	37.00	37	0	0	28	1	5	2	0	0	0	1
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	36.00	36	0	2	16	3	2	0	0	1	0	12
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	23.00	23	0	1	0	3	6	8	1	0	0	4
...............................................................................................................................................CTTTCGAGCAATTATCAAAGC......................................................................................................................................	21	1	15.00	15	0	0	8	3	2	2	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	13.00	13	0	0	0	1	2	0	0	0	0	10
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	7.00	7	0	1	1	0	0	2	0	0	0	3
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	7.00	7	0	0	1	1	0	1	0	0	0	4
...............................................................................................TTTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	22	1	6.00	6	0	2	0	0	1	0	0	0	0	3
................................................................................................................................................TTTCGAGCAATTATCAAAGCC.....................................................................................................................................	21	1	5.00	5	0	2	2	1	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	5
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	5	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	5.00	5	0	3	0	0	0	1	0	0	0	1
..............................................................................................ATTTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	4
...............................................................................................TTTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	4
...............................................................................................TTTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	4
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	2	0	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGTA...................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	1	0	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	1	0	0	0	0	2
.................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	3.00	3	0	0	1	0	0	0	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAG.........................................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	3

droPer2

AT-------TCCATTGTGAA-A------------------GTA--TA-----------------------------A--ACCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAAT-----TAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACAT---------------------------------------------TTT--A-GTGTGAAA--------------T-----ACTTGACT-----CAAAGGTAAGTGAA----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	43819.00	43819	38612	51	1437	1830	1836	53
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	6166.00	6166	4525	15	436	664	507	19
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1577.00	1577	661	8	51	427	410	20
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	1055.00	1055	945	0	10	42	55	3
...............................................................................................TTTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	169.00	169	162	0	4	3	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	163.00	163	155	0	2	2	4	0
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	132.00	132	48	1	2	45	36	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	104.00	104	34	1	5	31	32	1
...............................................................................................TTTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	82.00	82	80	0	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	78.00	78	42	0	5	16	15	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	68.00	68	14	0	7	20	27	0
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	68.00	68	12	0	1	21	34	0
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	66.00	66	19	0	2	17	28	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	38.00	38	25	7	2	3	1	0
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	36.00	36	1	0	2	20	13	0
...............................................................................................................................................CTTTCGAGCAATTATCAAAGCC.....................................................................................................................................	22	1	32.00	32	6	3	9	8	6	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	26.00	26	25	0	0	0	1	0
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	25.00	25	4	0	1	14	6	0
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	14.00	14	12	1	0	1	0	0
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	12.00	12	12	0	0	0	0	0
...............................................................................................TTTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	22	1	9.00	9	8	0	0	1	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	7.00	7	4	0	0	3	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	7.00	7	2	1	0	3	1	0
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	6.00	6	1	0	0	3	1	1
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	5.00	5	2	0	1	0	2	0
..................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	5.00	5	3	0	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	5.00	5	0	0	0	2	3	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	4.00	4	3	0	0	0	1	0
...............................................................................................................................................CTTTCGAGCAATTATCAAAGC......................................................................................................................................	21	1	4.00	4	0	0	0	1	3	0
...............................................................................................TTTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	1	0
...............................................................................................TTTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	3.00	3	0	0	0	2	1	0
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	3.00	3	2	0	0	0	1	0
...............................................................................................TTTTTGATTGTTGCTCAGA........................................................................................................................................................................................	19	1	3.00	3	1	0	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	1
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
..............................................................................................ATTTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	2	1.50	3	0	0	1	2	0	0
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	3	1.33	4	1	0	0	0	3	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................ATTTTTGATTGTTGCTCAGA........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droWil2

T---------CATTTGGTAA-A-----CTGAATGTTTGTGAAT--TGGTT-TGCTT--ATTT--------G--CCCA--TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTAC----TTTATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACAG---------------------------------------------TTTTCAACC-------ATAGAAATCCAACT-----A------------TTTTGAAACGAAAC---T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	312741.00	312741	225435	267	140	56517	30382
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	56057.00	56057	28938	54	26	13896	13143
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	15687.00	15687	8707	23	23	2588	4346
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	9781.00	9781	8409	5	3	595	769
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	4089.00	4089	3452	5	0	400	232
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	1774.00	1774	1295	2	0	110	367
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	1077.00	1077	1025	0	0	8	44
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	801.00	801	312	0	2	186	301
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	590.00	590	324	2	0	140	124
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	520.00	520	418	0	0	19	83
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	479.00	479	341	0	0	63	75
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	353.00	353	98	0	0	49	206
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	352.00	352	164	17	1	84	86
...............................................................................................................................................CTTTCGAGCAATAATTGAAACC.....................................................................................................................................	22	1	310.00	310	128	5	1	139	37
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	215.00	215	211	0	0	2	2
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	215.00	215	196	0	0	2	17
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	149.00	149	80	1	0	32	36
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	114.00	114	25	5	0	29	55
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	48.00	48	20	0	0	12	16
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	47.00	47	13	0	0	8	26
................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	2	45.50	91	91	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	43.00	43	4	1	1	5	32
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	43.00	43	32	0	0	1	10
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	40.00	40	29	0	0	6	5
................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	33.00	33	28	0	0	2	3
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	22.00	22	18	0	0	3	1
.................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	21.00	21	12	0	0	2	7
.....................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	20.00	20	16	0	0	2	2
..................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	18.00	18	3	0	0	4	11
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	12.00	12	2	1	0	1	8
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	11.00	11	2	0	0	8	1
.................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	11.00	11	7	0	0	3	1
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	10.00	10	5	0	0	4	1
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	10.00	10	5	0	1	0	4
................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	8.00	8	4	0	0	0	4
................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	8.00	8	6	0	0	1	1
................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	2	8.00	16	0	0	0	7	9
................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	8.00	8	6	0	0	0	2
...................................................................................................TGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	22	1	7.00	7	5	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	7.00	7	1	0	0	1	5
..............................................................................................AATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	25	1	7.00	7	0	0	0	5	2
.................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	7.00	7	1	0	0	0	6
...................................................................................................TGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	19	1	6.00	6	2	0	0	2	2
................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	6.00	6	4	0	0	1	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	6.00	6	1	0	0	1	4
...............................................................................................................................................CTTTCGAGCAATAATTGAAAC......................................................................................................................................	21	1	6.00	6	1	0	0	3	2
...................................................................................................TGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	18	1	5.00	5	1	0	0	0	4
................................................................................................TTTTGATTGTTGCTCAGAAAGCCCA.................................................................................................................................................................................	25	1	5.00	5	3	0	0	2	0
.......................................................................................................................CTCATTAC----TTTATCAGTTGG...........................................................................................................................................................	20	1	5.00	5	0	0	0	5	0
..................................................................................................TTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	22	1	4.00	4	3	0	0	0	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCCCC.................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	4.00	4	0	0	0	4	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	4.00	4	1	0	0	1	2
................................................................................................TTTTGATTGTTGCTCAGC........................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	22	1	4.00	4	2	0	0	0	2
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	7	3.86	27	26	0	0	0	1
................................................................................................................................................TTTCGAGCAATAATTGAAACC.....................................................................................................................................	21	1	3.00	3	0	0	0	2	1

droVir3

A---------CATTTT-CCA-AGTTACAA-----------CTC--CATTT-CCTTCCTACCTC----------ACAA--AACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CAT-----TCAATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGT---------------------------------------------TTACCT-------AA--------------T-----ATTATTATCATGGTCCAGGTAAGTACC---T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	75030.00	75030	319	20554	36	35016	2	0	15	0	0	0	0	0	0	0	193	130	89	176	103	71	5	99	340	5	3	2	11	18	6	6	0	10	0	0	0	0	0	4	1	2	6	16	18	0	0	6	8	19	40	343	615	934	638	919	716	186	155	63	3935	3095	1915	22	0	1	4	136	128	203	494	763	298	343	394	455	129	177	216	206	218
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	7885.00	7885	44	3094	8	1856	1	2	8	0	0	0	0	0	0	0	54	50	25	57	36	16	0	20	74	1	2	0	3	3	1	2	1	1	0	0	0	0	0	2	0	1	1	3	1	0	0	0	0	1	0	11	18	36	18	44	37	19	15	6	320	742	682	5	0	0	1	18	12	16	66	118	49	32	75	49	2	22	19	43	42
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	5009.00	5009	10	1442	0	230	0	0	2	0	0	0	0	0	0	0	2	2	0	3	2	2	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	5	8	11	0	1	0	2	4	3	47	107	191	150	245	227	67	68	37	1872	88	40	0	0	0	0	3	5	14	15	26	4	13	7	25	2	8	1	6	4
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1758.00	1758	18	725	3	72	1	2	5	1	0	0	0	0	0	0	46	27	17	35	19	5	1	13	44	0	1	1	1	5	3	0	0	3	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	1	1	1	8	82	499	3	0	0	0	1	1	3	14	23	4	12	10	16	0	3	2	9	9
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	450.00	450	2	170	2	3	0	0	1	0	0	0	0	0	0	0	24	23	13	25	11	8	0	14	33	0	1	1	0	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	4	98	0	0	0	0	1	0	0	0	2	2	0	0	0	1	0	1	0	3
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	267.00	267	0	147	0	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	4	5	7	2	1	0	0	13	5	3	0	0	0	0	0	0	1	2	1	0	0	0	0	2	0	1	0	2
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	198.00	198	4	181	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	1	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	164.00	164	1	98	0	21	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	9	3	17	0	0	0	0	1	0	0	3	1	0	0	2	0	0	0	0	0	1
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	150.00	150	1	73	1	2	0	0	0	0	0	0	0	0	0	0	6	4	2	1	0	0	0	0	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	45	0	0	0	0	0	0	0	2	0	4	0	0	0	0	1	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	126.00	126	0	49	0	10	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	4	28	15	0	0	0	0	0	0	0	2	1	2	2	0	1	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	114.00	114	0	24	3	62	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	3	6	5	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	100.00	100	0	41	0	4	0	0	0	0	0	0	0	0	0	0	1	2	1	1	1	1	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	2	12	24	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	79.00	79	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	1	33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	61.00	61	1	13	0	6	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	54.00	54	0	37	0	1	0	0	0	0	0	0	0	0	0	0	4	1	1	1	1	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1
................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	1	34.00	34	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	33.00	33	1	6	0	21	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTCGAGTAATAATCGAAACC.....................................................................................................................................	22	1	32.00	32	0	1	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	18.00	18	0	3	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	16.00	16	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	12.00	12	0	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	9.00	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	6.00	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	4.00	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	4.00	4	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAAA....................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

A---------CCGTCAGCC---------------------------------------------------------A--AACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAA--TTTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCAAAAATTTCAAAAAAATTAAAATACAAAATTAACTACAAT------------------------------------------------TGAGGTAAGTAAA---T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	394773.00	394773	238	11250	1495	3434	378156	200
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	24432.00	24432	103	2498	294	724	20743	70
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	2114.00	2114	2	201	35	63	1802	11
................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	2096.00	2096	1	40	4	8	2043	0
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1779.00	1779	64	231	354	755	337	38
.................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	1462.00	1462	19	23	3	8	1407	2
...............................................................................................................................................CTTTCGAGTAATAATCGAAACC.....................................................................................................................................	22	1	1123.00	1123	4	1	0	1	1117	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	347.00	347	1	33	13	37	254	9
..................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	291.00	291	5	5	0	2	279	0
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	220.00	220	21	8	60	109	16	6
................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	201.00	201	3	47	11	23	114	3
................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	174.00	174	0	4	0	1	169	0
.................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	111.00	111	0	4	1	1	105	0
................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	102.00	102	0	30	9	31	31	1
................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	100.00	100	1	4	9	22	61	3
.................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	95.00	95	11	6	0	1	77	0
................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	84.00	84	8	3	20	47	5	1
................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	80.00	80	0	3	33	38	6	0
...............................................................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	53.00	53	0	4	2	4	43	0
................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	49.00	49	2	8	8	22	8	1
...............................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	48.00	48	0	1	0	0	47	0
................................................................................................................................................TTTCGAGTAATAATCGAAACC.....................................................................................................................................	21	1	26.00	26	0	0	0	0	26	0
..................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	21.00	21	2	0	0	0	19	0
....................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	21.00	21	0	3	0	1	17	0
...................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	17.00	17	1	0	0	0	16	0
...............................................................................................................................................CTTTCGAGTAATAATCGAAAC......................................................................................................................................	21	1	12.00	12	0	0	1	0	11	0
.....................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	11.00	11	1	1	1	0	8	0
................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	10.00	10	0	7	0	0	3	0
.......................................................................................................................CGTAA--TTTAACTTA--ACATGG...........................................................................................................................................................	20	1	9.00	9	0	0	0	0	9	0
.................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	8.00	8	6	0	0	2	0	0

droGri2

A---------TTTATGGTTA-C-----TA-----------GTG--TGTTC-TCCTGATGCCTGAAACAGCCAACTAC--TATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CAC-----TTGACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAA---------------------------------------------TT----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	21.00	21	8	13
................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	4.00	4	1	3
................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	2.00	2	1	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	1.00	1	0	1
................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1.00	1	0	1
................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	1.00	1	0	1

dan-mir-315

scaffold_13337:18585484-18585567 -

Known

Unknown

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.3	-35.9	-35.8