ID:

dan-mir-312

 Coordinate:

scaffold_13266:4132689-4132745 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.8 -35.8 -35.7

Flybase annnotation

utr3 [utr3_minus_3275]; utr3 [utr3_minus_3796]; pre_miRNA [Dana\mir-312-RM]; miRNA [Dana\miR-312-RA]

No Repeatable elements found

Sense Strand Reads

AAATAAATAATAGTGTTTGTGCTTTTTAAAAAAAACATCTACAATTTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTTTTTATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGATCTAAGCGGCTATAACCGAAAAGTTTTCAGGAGCTAA

***********************************.((((((.((.((.((((.((((((.(((((((..((((..........))))..))))))).)))))))))).)).)).)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 M044

female body

 V039

embryo

 V105

male body		 V055

head

 V106

head
........................................................................................TATTGCACTTGAGACGGCCGAAA.............................................. 23 0 1 108255.00 108255 105424 1456 1248 106 13 8
........................................................................................TATTGCACTTGAGACGGCCGA................................................ 21 0 1 103377.00 103377 96420 3918 2583 388 48 20
........................................................................................TATTGCACTTGAGACGGCCGAA............................................... 22 0 1 31472.00 31472 28985 1473 720 262 26 6
........................................................................................TATTGCACTTGAGACGGCCGAAAA............................................. 24 1 1 25826.00 25826 24508 557 734 21 6 0
........................................................................................TATTGCACTTGAGACGGCCG................................................. 20 0 1 10555.00 10555 9044 850 492 145 15 9
........................................................................................TGTTGCACTTGAGACGGCCGAAA.............................................. 23 1 1 4522.00 4522 4519 0 2 1 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAA............................................ 25 1 1 4371.00 4371 4011 222 134 3 0 1
........................................................................................TGTTGCACTTGAGACGGCCGA................................................ 21 1 1 4146.00 4146 4141 0 5 0 0 0
.................................................CGGTGCGTCTCTAGTGCAACT....................................................................................... 21 0 1 3186.00 3186 1925 121 1130 7 1 2
........................................................................................TACTGCACTTGAGACGGCCGAAA.............................................. 23 1 1 3123.00 3123 3122 0 1 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGA................................................ 21 1 1 2961.00 2961 2958 0 3 0 0 0
........................................................................................TATTGCACTTGAGACGGCC.................................................. 19 0 1 2545.00 2545 2490 23 27 4 1 0
........................................................................................TATTGCACTTGAGACGGCCGAAT.............................................. 23 1 1 2291.00 2291 2148 41 55 42 5 0
........................................................................................TATTGCACTTGAGACGGCCGAT............................................... 22 1 1 1407.00 1407 1307 35 30 30 3 2
........................................................................................TATGGCACTTGAGACGGCCGAAA.............................................. 23 1 1 1340.00 1340 1339 0 1 0 0 0
.........................................................................................ATTGCACTTGAGACGGCCGAAA.............................................. 22 0 1 1249.00 1249 1171 73 4 1 0 0
........................................................................................TATGGCACTTGAGACGGCCGA................................................ 21 1 1 1206.00 1206 1204 0 2 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAA............................................... 22 1 1 1186.00 1186 1185 1 0 0 0 0
.........................................................................................ATTGCACTTGAGACGGCCGA................................................ 20 0 1 1115.00 1115 836 266 9 3 1 0
........................................................................................TATTGCACTTGAGACGGCCGAAG.............................................. 23 1 1 1110.00 1110 1083 9 16 1 1 0
........................................................................................TATCGCACTTGAGACGGCCGAAA.............................................. 23 1 1 1086.00 1086 1084 0 2 0 0 0
........................................................................................TATCGCACTTGAGACGGCCGA................................................ 21 1 1 1043.00 1043 1037 2 4 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAAAA............................................. 24 2 1 996.00 996 996 0 0 0 0 0
.......................................................................................CTATTGCACTTGAGACGGCCGAAA.............................................. 24 1 1 994.00 994 991 3 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAC.............................................. 23 1 1 973.00 973 943 12 16 2 0 0
.......................................................................................CTATTGCACTTGAGACGGCCGA................................................ 22 1 1 961.00 961 945 12 4 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAA............................................... 22 1 1 883.00 883 882 0 1 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAAA........................................... 26 2 1 822.00 822 681 97 43 1 0 0
........................................................................................TTTTGCACTTGAGACGGCCGAAA.............................................. 23 1 1 801.00 801 801 0 0 0 0 0
........................................................................................TTTTGCACTTGAGACGGCCGA................................................ 21 1 1 781.00 781 778 1 2 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAAAA............................................. 24 2 1 702.00 702 700 1 1 0 0 0
........................................................................................TATAGCACTTGAGACGGCCGAAA.............................................. 23 1 1 635.00 635 635 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAT............................................. 24 0 1 616.00 616 591 6 14 4 1 0
........................................................................................TATAGCACTTGAGACGGCCGA................................................ 21 1 1 604.00 604 604 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGGA............................................... 22 1 1 533.00 533 77 427 28 0 1 0
........................................................................................TATTGCACTTGAGACGGCCGAC............................................... 22 1 1 526.00 526 512 3 11 0 0 0
.........................................................................................ATTGCACTTGAGACGGCCGAA............................................... 21 0 1 458.00 458 350 103 2 3 0 0
.................................................CGGTGCGTCTCTAGTGCAACC....................................................................................... 21 1 1 440.00 440 437 1 2 0 0 0
........................................................................................TATTGCACTTGAGAAGGCCGAAA.............................................. 23 1 1 428.00 428 425 0 3 0 0 0
.................................................CTGTGCGTCTCTAGTGCAACT....................................................................................... 21 1 1 416.00 416 413 0 3 0 0 0
........................................................................................TATGGCACTTGAGACGGCCGAA............................................... 22 1 1 410.00 410 409 0 0 0 1 0
........................................................................................TATTGCACTTGAGACGGCCGATA.............................................. 23 1 1 392.00 392 355 6 21 9 0 1
........................................................................................TGTTGCACTTGAGACGGCCG................................................. 20 1 1 387.00 387 386 1 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGACA.............................................. 23 1 1 380.00 380 347 3 30 0 0 0
........................................................................................TATTGCACTTGAGAAGGCCGA................................................ 21 1 1 378.00 378 375 0 3 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGG................................................ 21 1 1 375.00 375 171 171 31 1 1 0
........................................................................................TATTGCACTTGAGACGGC................................................... 18 0 1 341.00 341 328 9 3 1 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAC............................................. 24 1 1 341.00 341 324 3 12 1 0 1
........................................................................................TATTGCACTTGAGACGGCCGT................................................ 21 1 1 335.00 335 269 17 25 19 2 3
........................................................................................TATCGCACTTGAGACGGCCGAA............................................... 22 1 1 331.00 331 327 1 3 0 0 0
.........................................................................................ATTGCACTTGAGACGGCCGAAAA............................................. 23 1 1 314.00 314 279 34 1 0 0 0
........................................................................................GATTGCACTTGAGACGGCCGAAA.............................................. 23 1 1 312.00 312 306 5 1 0 0 0
.......................................................................................CTATTGCACTTGAGACGGCCGAAAA............................................. 25 2 1 305.00 305 301 3 1 0 0 0
........................................................................................TACTGCACTTGAGACGGCCG................................................. 20 1 1 304.00 304 304 0 0 0 0 0
........................................................................................TATTGCAATTGAGACGGCCGA................................................ 21 1 1 298.00 298 297 0 1 0 0 0
........................................................................................CATTGCACTTGAGACGGCCGAAA.............................................. 23 1 1 293.00 293 291 0 2 0 0 0
........................................................................................GATTGCACTTGAGACGGCCGA................................................ 21 1 1 291.00 291 274 14 3 0 0 0
........................................................................................CATTGCACTTGAGACGGCCGA................................................ 21 1 1 288.00 288 276 4 6 2 0 0
........................................................................................TATGGCACTTGAGACGGCCGAAAA............................................. 24 2 1 286.00 286 286 0 0 0 0 0
.......................................................................................CTATTGCACTTGAGACGGCCGAA............................................... 23 1 1 268.00 268 264 4 0 0 0 0
........................................................................................TATTGCAATTGAGACGGCCGAAA.............................................. 23 1 1 256.00 256 254 0 2 0 0 0
........................................................................................TATCGCACTTGAGACGGCCGAAAA............................................. 24 2 1 253.00 253 248 1 4 0 0 0
........................................................................................TTTTGCACTTGAGACGGCCGAA............................................... 22 1 1 252.00 252 252 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGGAA.............................................. 23 1 1 228.00 228 107 95 26 0 0 0
........................................................................................AATTGCACTTGAGACGGCCGAAA.............................................. 23 1 1 225.00 225 225 0 0 0 0 0
........................................................................................AATTGCACTTGAGACGGCCGA................................................ 21 1 1 225.00 225 222 2 1 0 0 0
..........................................................................................TTGCACTTGAGACGGCCGAAA.............................................. 21 0 1 215.00 215 210 5 0 0 0 0
........................................................................................TATTGCACTTGAGACTGCCGAAA.............................................. 23 1 1 215.00 215 198 3 14 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAG............................................... 22 1 1 203.00 203 175 13 9 4 1 1
........................................................................................TATTGCACTTGAGACGGCCGAAAAAAA.......................................... 27 2 1 197.00 197 144 40 12 0 0 1
........................................................................................TTTTGCACTTGAGACGGCCGAAAA............................................. 24 2 1 196.00 196 196 0 0 0 0 0
.........................................................................................AGTGCACTTGAGACGGCCGAAA.............................................. 22 1 1 196.00 196 196 0 0 0 0 0
........................................................................................TATTGCACTTGAGACTGCCGA................................................ 21 1 1 196.00 196 173 3 17 2 1 0
..........................................................................................TTGCACTTGAGACGGCCGA................................................ 19 0 1 178.00 178 162 15 0 1 0 0
........................................................................................TATAGCACTTGAGACGGCCGAA............................................... 22 1 1 178.00 178 178 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGATT.............................................. 23 2 1 170.00 170 145 5 2 16 1 1
........................................................................................TATTGCACTTGAGACGTCCGA................................................ 21 1 1 164.00 164 125 5 30 3 1 0
........................................................................................TATTGCACTTGAGACGGCCAAAA.............................................. 23 1 1 163.00 163 157 1 5 0 0 0
.................................................CGGTGCGTCTCTAGTGCAACTCT..................................................................................... 23 0 1 162.00 162 3 123 0 25 4 7
.........................................................................................AGTGCACTTGAGACGGCCGA................................................ 20 1 1 160.00 160 160 0 0 0 0 0
........................................................................................TATTGGACTTGAGACGGCCGA................................................ 21 1 1 159.00 159 156 1 1 0 0 1
........................................................................................TATTGCACGTGAGACGGCCGA................................................ 21 1 1 158.00 158 1 154 3 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAG............................................. 24 1 1 156.00 156 148 3 5 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAAAAA............................................ 25 2 1 155.00 155 155 0 0 0 0 0
.......................................................................................CGATTGCACTTGAGACGGCCGAAA.............................................. 24 2 1 155.00 155 155 0 0 0 0 0
.........................................................CTCTAGTGCAGATCTTGGT................................................................................. 19 2 1 150.00 150 1 107 2 20 12 8
........................................................................................TATTGGACTTGAGACGGCCGAAA.............................................. 23 1 1 145.00 145 145 0 0 0 0 0
........................................................................................TATAGCACTTGAGACGGCCGAAAA............................................. 24 2 1 136.00 136 136 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGTCCGAAA.............................................. 23 1 1 134.00 134 120 2 12 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGATAA............................................. 24 2 1 131.00 131 123 2 6 0 0 0
.......................................................................................CGATTGCACTTGAGACGGCCGA................................................ 22 2 1 130.00 130 130 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAT............................................ 25 2 1 130.00 130 123 1 5 1 0 0
........................................................................................TATTGCACTTGAGAAGGCCGAA............................................... 22 1 1 130.00 130 127 1 1 1 0 0
.................................................CGGTGCGTCTCTAGTGCAACTC...................................................................................... 22 0 1 129.00 129 20 86 15 5 3 0
.................................................CGGTGCGTCTCTAGTGCAAC........................................................................................ 20 0 1 127.00 127 96 0 31 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAAAAA............................................ 25 2 1 125.00 125 125 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCTA................................................ 21 1 1 122.00 122 105 1 15 1 0 0
........................................................................................TATTGCACTTGAGGCGGCCGA................................................ 21 1 1 116.00 116 108 5 3 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGC................................................ 21 1 1 112.00 112 65 0 46 0 1 0
........................................................................................TATCGCACTTGAGACGGCCG................................................. 20 1 1 112.00 112 108 1 2 1 0 0
.................................................CGCTGCGTCTCTAGTGCAACT....................................................................................... 21 1 1 105.00 105 103 0 2 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGACAA............................................. 24 2 1 104.00 104 82 1 21 0 0 0
........................................................................................TATGGCACTTGAGACGGCCG................................................. 20 1 1 103.00 103 102 0 1 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAAT.............................................. 23 2 1 101.00 101 101 0 0 0 0 0
........................................................................................TATTGCACTTGAGAAGGCCGAAAA............................................. 24 2 1 100.00 100 100 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGGAAA............................................. 24 2 1 99.00 99 23 62 14 0 0 0
........................................................................................TATTGCACTTGAGACGGCCA................................................. 20 1 1 99.00 99 85 11 3 0 0 0
.................................................CTGTGCGTCTCTAGTGCAACC....................................................................................... 21 2 1 98.00 98 98 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCC................................................. 20 1 1 97.00 97 92 0 5 0 0 0
........................................................................................TATTTCACTTGAGACGGCCGA................................................ 21 1 1 97.00 97 82 5 8 2 0 0
........................................................................................TATTGCGCTTGAGACGGCCGAAA.............................................. 23 1 1 95.00 95 93 0 2 0 0 0
........................................................................................TATTGCACTTGAGACGGCTGA................................................ 21 1 1 95.00 95 90 3 1 0 1 0
........................................................................................TATTGCACTTGAGACGGCCTAAA.............................................. 23 1 1 94.00 94 86 0 8 0 0 0
........................................................................................TATTTCACTTGAGACGGCCGAAA.............................................. 23 1 1 94.00 94 87 1 6 0 0 0
........................................................................................TATTGCACTTGAGACGGCTGAAA.............................................. 23 1 1 94.00 94 92 0 2 0 0 0
........................................................................................TATTGCACTTGAGACGGCCAA................................................ 21 1 1 94.00 94 86 4 3 0 1 0
........................................................................................TATTGCACCTGAGACGGCCGA................................................ 21 1 1 94.00 94 61 30 3 0 0 0
........................................................................................TATTGCACCTGAGACGGCCGAAA.............................................. 23 1 1 93.00 93 80 11 1 1 0 0
........................................................................................TATTGCGCTTGAGACGGCCGA................................................ 21 1 1 92.00 92 83 2 6 1 0 0
.........................................................................................ATTGCACTTGAGACGGCCG................................................. 19 0 1 91.00 91 53 37 0 1 0 0
........................................................................................TATTGCACTTGGGACGGCCGAAA.............................................. 23 1 1 90.00 90 87 1 1 1 0 0
........................................................................................TATTGCACTTGAGACGCCCGAAA.............................................. 23 1 1 88.00 88 82 0 6 0 0 0
........................................................................................GATTGCACTTGAGACGGCCGAA............................................... 22 1 1 86.00 86 80 4 2 0 0 0
........................................................................................TATTGCACTTGAGACGACCGAAA.............................................. 23 1 1 85.00 85 84 0 1 0 0 0
.......................................................................................CTATTGCACTTGAGACGGCCG................................................. 21 1 1 85.00 85 80 5 0 0 0 0
........................................................................................TATTGCACTTGAGACAGCCGAAA.............................................. 23 1 1 84.00 84 79 1 4 0 0 0
........................................................................................TATTGCACTTGAGGCGGCCGAAA.............................................. 23 1 1 83.00 83 78 2 3 0 0 0
........................................................................................TATTGCAATTGAGACGGCCGAA............................................... 22 1 1 83.00 83 81 0 2 0 0 0
......................................................................................TCTATTGCACTTGAGACGGCCGA................................................ 23 2 1 81.00 81 81 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCCA................................................ 21 1 1 80.00 80 12 0 68 0 0 0
........................................................................................TATTGTACTTGAGACGGCCGA................................................ 21 1 1 80.00 80 78 1 1 0 0 0
........................................................................................TATTGCACTTAAGACGGCCGAAA.............................................. 23 1 1 78.00 78 77 0 1 0 0 0
........................................................................................CATTGCACTTGAGACGGCCGAA............................................... 22 1 1 76.00 76 72 1 2 1 0 0
........................................................................................TTTTGCACTTGAGACGGCCG................................................. 20 1 1 75.00 75 75 0 0 0 0 0
........................................................................................TATTGCACTTGAGACTGCCGAA............................................... 22 1 1 74.00 74 61 1 10 2 0 0
........................................................................................TATTGCACTTGAGACGGCCGAACA............................................. 24 2 1 74.00 74 63 4 7 0 0 0
......................................................................................TCTATTGCACTTGAGACGGCCGAAA.............................................. 25 2 1 73.00 73 73 0 0 0 0 0
..........................................................................................TTGCACTTGAGACGGCCGAA............................................... 20 0 1 73.00 73 69 3 0 1 0 0
........................................................................................TATTGCACTTGAGACTGCCGAAAA............................................. 24 2 1 70.00 70 64 0 5 1 0 0
........................................................................................TATTGCACTTAAGACGGCCGA................................................ 21 1 1 70.00 70 65 0 5 0 0 0
........................................................................................TATTGCACTTGAGACGGTCGAAA.............................................. 23 1 1 69.00 69 68 0 1 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAC............................................ 25 2 1 69.00 69 65 2 2 0 0 0
........................................................................................TATTGCACATGAGACGGCCGA................................................ 21 1 1 69.00 69 1 67 0 1 0 0
........................................................................................TATTGCACTTGGGACGGCCGA................................................ 21 1 1 69.00 69 63 2 4 0 0 0
........................................................................................TATTGCACTTGAGACGACCGA................................................ 21 1 1 68.00 68 59 1 8 0 0 0
........................................................................................CATTGCACTTGAGACGGCCGAAAA............................................. 24 2 1 68.00 68 67 1 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCAAAAA............................................. 24 2 1 67.00 67 65 1 1 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGATAAA............................................ 25 2 1 66.00 66 63 2 1 0 0 0
..........................................................................................TTGCACTTGAGACGGCCGAAAA............................................. 22 1 1 66.00 66 62 4 0 0 0 0
........................................................................................TATTGCAATTGAGACGGCCGAAAA............................................. 24 2 1 66.00 66 66 0 0 0 0 0
........................................................................................TATTGCACTCGAGACGGCCGA................................................ 21 1 1 65.00 65 57 2 5 1 0 0
....................................................................................GATCTATTGCACTTGAGACGGCCGA................................................ 25 3 1 65.00 65 65 0 0 0 0 0
........................................................................................TATTGCACTCGAGACGGCCGAAA.............................................. 23 1 1 65.00 65 62 0 3 0 0 0
........................................................................................TATTGCACGTGAGACGGCCGAAA.............................................. 23 1 1 64.00 64 4 59 1 0 0 0
........................................................................................TATTGTACTTGAGACGGCCGAAA.............................................. 23 1 1 63.00 63 62 1 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCAAA............................................... 22 1 1 63.00 63 58 3 2 0 0 0
........................................................................................TATTGCACGTGAGACGGCCGAA............................................... 22 1 1 63.00 63 0 62 1 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAATA............................................. 24 2 1 62.00 62 57 1 4 0 0 0
........................................................................................GATTGCACTTGAGACGGCCGAAAA............................................. 24 2 1 61.00 61 57 2 2 0 0 0
........................................................................................TATTGCACTTTAGACGGCCGA................................................ 21 1 1 61.00 61 18 0 40 3 0 0
.......................................................................................CGATTGCACTTGAGACGGCCGAAAA............................................. 25 3 1 61.00 61 61 0 0 0 0 0
...........................................................................................TGCACTTGAGACGGCCGAAA.............................................. 20 0 1 60.00 60 59 1 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGCAA.............................................. 23 1 1 60.00 60 2 0 58 0 0 0
.......................................................................................CGATTGCACTTGAGACGGCCGAA............................................... 23 2 1 59.00 59 59 0 0 0 0 0
........................................................................................TATTGCACTTGAGACAGCCGA................................................ 21 1 1 59.00 59 48 3 8 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGCA............................................... 22 1 1 57.00 57 0 0 55 1 1 0
........................................................................................TGTTGCACTTGAGACGGCC.................................................. 19 1 1 57.00 57 57 0 0 0 0 0
....................................................................................GATCTATTGCACTTGAGACGGCCGAAA.............................................. 27 3 1 57.00 57 57 0 0 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAT............................................... 22 2 1 57.00 57 57 0 0 0 0 0
........................................................................................TATTGGACTTGAGACGGCCGAA............................................... 22 1 1 55.00 55 53 1 0 1 0 0
........................................................................................TATTGCACTTGAGACGGCCT................................................. 20 1 1 55.00 55 38 6 6 4 0 1
.......................................................GCCTCTAGTGCAGATCTTGGT................................................................................. 21 3 2 54.50 109 1 80 0 11 7 10
.........................................................................................ATTGCACTTGAGACGGCCGAAAAA............................................ 24 1 1 53.00 53 41 12 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAGA.............................................. 23 1 1 53.00 53 46 2 4 1 0 0
........................................................................................TATTGCACTTGAGACGGTCGA................................................ 21 1 1 53.00 53 48 1 4 0 0 0
........................................................................................AATTGCACTTGAGACGGCCGAA............................................... 22 1 1 52.00 52 50 2 0 0 0 0
.......................................................................................CTATTGCACTTGAGACGGCCGAAAAA............................................ 26 2 1 51.00 51 51 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCTAA............................................... 22 1 1 50.00 50 42 1 7 0 0 0
.........................................................................................AGTGCACTTGAGACGGCCGAA............................................... 21 1 1 50.00 50 50 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAG............................................ 25 2 1 49.00 49 47 1 1 0 0 0
........................................................................................TATGGCACTTGAGACGGCCGAAAAA............................................ 25 2 1 48.00 48 48 0 0 0 0 0
.........................................................................................ATCGCACTTGAGACGGCCGAAA.............................................. 22 1 1 48.00 48 48 0 0 0 0 0
........................................................................................TGCTGCACTTGAGACGGCCGAAA.............................................. 23 2 1 46.00 46 46 0 0 0 0 0
........................................................................................TATTGGACTTGAGACGGCCGAAAA............................................. 24 2 1 46.00 46 44 1 1 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAAT.............................................. 23 2 1 46.00 46 46 0 0 0 0 0
........................................................................................TATTGCACTTGCGACGGCCGA................................................ 21 1 1 45.00 45 30 0 13 2 0 0
........................................................................................TATTGCACTTGAGACGTCCGACA.............................................. 23 2 1 45.00 45 45 0 0 0 0 0
........................................................................................TATTGCACTTGATACGGCCGA................................................ 21 1 1 45.00 45 11 0 30 4 0 0
........................................................................................TATTACACTTGAGACGGCCGA................................................ 21 1 1 45.00 45 40 0 5 0 0 0
........................................................................................TATTGCACTTGAGACGCCCGA................................................ 21 1 1 45.00 45 38 0 7 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAAG.............................................. 23 2 1 44.00 44 44 0 0 0 0 0
........................................................................................TATTGCACTGGAGACGGCCGA................................................ 21 1 1 43.00 43 41 0 2 0 0 0
........................................................................................AATTGCACTTGAGACGGCCGAAAA............................................. 24 2 1 43.00 43 43 0 0 0 0 0
.........................................................................................AGTGCACTTGAGACGGCCGAAAA............................................. 23 2 1 43.00 43 43 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAATT............................................. 24 1 1 43.00 43 40 2 0 1 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAGA............................................. 24 2 1 43.00 43 40 1 2 0 0 0
........................................................................................TATTACACTTGAGACGGCCGAAA.............................................. 23 1 1 42.00 42 42 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGGAAAA............................................ 25 2 1 41.00 41 4 35 2 0 0 0
........................................................................................TATAGCACTTGAGACGGCCG................................................. 20 1 1 41.00 41 41 0 0 0 0 0
........................................................................................TATTGCACTTGAAACGGCCGA................................................ 21 1 1 40.00 40 38 0 2 0 0 0
........................................................................................TGCTGCACTTGAGACGGCCGA................................................ 21 2 1 40.00 40 40 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGAC.................................................. 19 1 1 40.00 40 40 0 0 0 0 0
........................................................................................TATTGCACTTGCGACGGCCGAAA.............................................. 23 1 1 39.00 39 29 0 9 1 0 0
........................................................................................TATTGCACTTGAGTCGGCCGAAA.............................................. 23 1 1 39.00 39 38 0 1 0 0 0
........................................................................................TATTGCACTTGAGATGGCCGAAA.............................................. 23 1 1 38.00 38 37 0 1 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAT............................................... 22 2 1 38.00 38 38 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAAAAA......................................... 28 3 1 38.00 38 27 11 0 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAAC.............................................. 23 2 1 38.00 38 38 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGATC.............................................. 23 2 1 37.00 37 34 0 3 0 0 0
..........................................................................................TGGCACTTGAGACGGCCGAAA.............................................. 21 1 1 37.00 37 37 0 0 0 0 0
........................................................................................TATTGCACTTCAGACGGCCGA................................................ 21 1 1 36.00 36 24 1 11 0 0 0
........................................................................................TATTGCACTTGACACGGCCGA................................................ 21 1 1 36.00 36 27 0 7 2 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAAAAAA........................................... 26 3 1 36.00 36 36 0 0 0 0 0
.........................................................................................ATCGCACTTGAGACGGCCGA................................................ 20 1 1 36.00 36 36 0 0 0 0 0
........................................................................................TATTGCACGTGAGACGGCCG................................................. 20 1 1 36.00 36 0 36 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAAAAT........................................... 26 1 1 36.00 36 32 1 3 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAAG.............................................. 23 2 1 36.00 36 36 0 0 0 0 0
........................................................................................TATTGCACTTGAGTCGGCCGA................................................ 21 1 1 35.00 35 31 0 4 0 0 0
........................................................................................TATTGCACTTGATACGGCCGAAA.............................................. 23 1 1 35.00 35 21 1 13 0 0 0
...........................................................................................TGCACTTGAGACGGCCGA................................................ 18 0 1 35.00 35 34 1 0 0 0 0
........................................................................................TATTGCACTTGACACGGCCGAAA.............................................. 23 1 1 34.00 34 28 0 6 0 0 0
........................................................................................TATTGCACTTTAGACGGCCGAAA.............................................. 23 1 1 34.00 34 24 1 9 0 0 0
........................................................................................TATTGCACTTGAGACGTCCGAAAA............................................. 24 2 1 34.00 34 28 0 6 0 0 0
........................................................................................TATTGCACTTGAAACGGCCGAAA.............................................. 23 1 1 33.00 33 31 0 2 0 0 0
.................................................CGGGGCGTCTCTAGTGCAACT....................................................................................... 21 1 1 33.00 33 21 0 11 0 1 0
........................................................................................TATTGCAATTGAGACGGCCGACA.............................................. 23 2 1 33.00 33 33 0 0 0 0 0
.......................................................................................CTATTGCACTTGAGACGGCCGAAT.............................................. 24 2 1 33.00 33 32 1 0 0 0 0
........................................................................................TATTGCACTGGAGACGGCCGAAA.............................................. 23 1 1 33.00 33 30 0 2 0 1 0
........................................................................................TATTGCACCTGAGACGGCCGAA............................................... 22 1 1 32.00 32 22 10 0 0 0 0
........................................................................................TATTGCAATTGAGACGGCCG................................................. 20 1 1 32.00 32 32 0 0 0 0 0
........................................................................................TATTGCATTTGAGACGGCCGAAA.............................................. 23 1 1 32.00 32 31 0 1 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAAC.............................................. 23 2 1 31.00 31 31 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGTT............................................... 22 2 1 31.00 31 25 3 1 2 0 0
........................................................................................TATCGCACTTGAGACGGCCGAAAAA............................................ 25 2 1 31.00 31 31 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGTCCGAA............................................... 22 1 1 31.00 31 23 1 6 1 0 0
........................................................................................TATTGCACATGAGACGGCCGAAA.............................................. 23 1 1 30.00 30 8 22 0 0 0 0
........................................................................................TATTGCACTTGAGACAGCCGAA............................................... 22 1 1 30.00 30 23 2 2 2 1 0
........................................................................................TATTTCACTTGAGACGGCCGAA............................................... 22 1 1 30.00 30 24 1 3 2 0 0
........................................................................................TATTGCACTTGAGACGGCCGTAA.............................................. 23 1 1 30.00 30 16 4 8 2 0 0
........................................................................................TATTGCACTTGAGACGGCCGGAT.............................................. 23 2 1 30.00 30 4 26 0 0 0 0
........................................................................................TATTGCACTTAAGACGGCCGAA............................................... 22 1 1 30.00 30 27 0 2 1 0 0
........................................................................................TATTGCACTTGAGACGGCTGAA............................................... 22 1 1 30.00 30 27 1 1 1 0 0
..........................................................................................TGGCACTTGAGACGGCCGA................................................ 19 1 1 29.00 29 29 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCT.................................................. 19 1 1 29.00 29 28 0 1 0 0 0
........................................................................................TATTGCACTTGAGACGGCCCAAA.............................................. 23 1 1 29.00 29 7 0 22 0 0 0
........................................................................................TATTGCACTTGAGACGACCGAAAA............................................. 24 2 1 28.00 28 28 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAATAA............................................ 25 2 1 28.00 28 26 1 1 0 0 0
........................................................................................TATTGCACTTGAGAAGGCCG................................................. 20 1 1 27.00 27 25 0 2 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAACAA............................................ 25 2 1 27.00 27 20 2 5 0 0 0
........................................................................................TATTGCGCTTGAGACGGCCGAA............................................... 22 1 1 27.00 27 25 1 1 0 0 0
........................................................................................TATTGCACTTGAGACGCCCGAAAA............................................. 24 2 1 27.00 27 22 0 5 0 0 0
............................................................................................GCACTTGAGACGGCCGAAA.............................................. 19 0 1 27.00 27 27 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAATAAA........................................... 26 3 1 26.00 26 23 1 2 0 0 0
.....................................................................................ATCTATTGCACTTGAGACGGCCGAAA.............................................. 26 2 1 26.00 26 26 0 0 0 0 0
........................................................................................TATTGCACTTGAGACTGCCG................................................. 20 1 1 26.00 26 18 1 7 0 0 0
........................................................................................TGTTGCACTTGAGAAGGCCGAAA.............................................. 23 2 1 26.00 26 26 0 0 0 0 0
.........................................................................................ATTGCACTTGAGACGGCCGAAT.............................................. 22 1 1 26.00 26 26 0 0 0 0 0
........................................................................................TATTGTACTTGAGACGGCCGAA............................................... 22 1 1 26.00 26 25 1 0 0 0 0
.........................................................................................ATTGCACTTGAGACGGCC.................................................. 18 0 1 25.00 25 22 3 0 0 0 0
........................................................................................TATTGCACTTGAGATGGCCGA................................................ 21 1 1 25.00 25 23 0 2 0 0 0
.................................................CGGCGCGTCTCTAGTGCAACT....................................................................................... 21 1 1 25.00 25 18 0 7 0 0 0
........................................................................................TATTGCAATTGAGACGTCCGA................................................ 21 2 1 25.00 25 25 0 0 0 0 0
........................................................................................TATAGCACTTGAGACGGCCGAAAAA............................................ 25 2 1 25.00 25 25 0 0 0 0 0
........................................................................................TTTTGCACTTGAGACGGCCGAAAAA............................................ 25 2 1 25.00 25 24 1 0 0 0 0
.........................................................................................ATTGCACTTGAGACGGCCGGA............................................... 21 1 1 25.00 25 0 25 0 0 0 0
........................................................................................TATTGCACGTGAGACGGCCGAAAA............................................. 24 2 1 25.00 25 2 23 0 0 0 0
........................................................................................GATTGCACTTGAGACGGCCG................................................. 20 1 1 25.00 25 22 2 1 0 0 0
........................................................................................TATTGCACTTGAGACGGCCCAA............................................... 22 1 1 25.00 25 1 0 24 0 0 0
........................................................................................TTTTGCACTTGAGACGGCCGAAT.............................................. 23 2 1 24.00 24 24 0 0 0 0 0
........................................................................................TGTTGCACTTGAGACGGCCGAC............................................... 22 2 1 24.00 24 24 0 0 0 0 0
........................................................................................TATTGCACCTGAGACGGCCGAAAA............................................. 24 2 1 24.00 24 19 3 2 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGATG.............................................. 23 2 1 24.00 24 18 2 0 4 0 0
........................................................................................TGTTGCAATTGAGACGGCCGAAA.............................................. 23 2 1 24.00 24 24 0 0 0 0 0
......................................................................................TCTATTGCACTTGAGACGGCCGAA............................................... 24 2 1 24.00 24 24 0 0 0 0 0
........................................................................................TATTGCACTTAAGACGGCCGAAAA............................................. 24 2 1 24.00 24 23 0 1 0 0 0
........................................................................................TATTGCACTAGAGACGGCCGAAA.............................................. 23 1 1 24.00 24 24 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGCAAA............................................. 24 2 1 24.00 24 0 0 24 0 0 0
........................................................................................TACTGCACTTGAGACGGCC.................................................. 19 1 1 24.00 24 24 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCTAAAA............................................. 24 2 1 24.00 24 19 0 5 0 0 0
........................................................................................TATTGCGCTTGAGACGGCCGAAAA............................................. 24 2 1 23.00 23 22 0 1 0 0 0
........................................................................................TAGTGCACTTGAGACGGCCGA................................................ 21 1 1 23.00 23 15 0 7 0 1 0
........................................................................................TACTGCAATTGAGACGGCCGA................................................ 21 2 1 23.00 23 23 0 0 0 0 0
........................................................................................TATTGCACTTGAGGCGGCCGAA............................................... 22 1 1 23.00 23 19 3 1 0 0 0
.................................................CTGTGCGTCTCTAGTGCAAC........................................................................................ 20 1 1 23.00 23 23 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGCCGAAACA............................................ 25 1 1 22.00 22 14 0 8 0 0 0
........................................................................................TATTGCACTCGAGACGGCCGAAAA............................................. 24 2 1 22.00 22 19 1 2 0 0 0
........................................................................................TATTGCACTTGAGACAGCCGAAAA............................................. 24 2 1 22.00 22 18 0 4 0 0 0
........................................................................................TATTGCACATGAGACGGCCGAA............................................... 22 1 1 22.00 22 3 18 0 1 0 0
........................................................................................TATTGCACTTGGGACGGCCGAA............................................... 22 1 1 22.00 22 22 0 0 0 0 0
........................................................................................TATTCCACTTGAGACGGCCGAAA.............................................. 23 1 1 22.00 22 19 3 0 0 0 0
.................................................CGCTGCGTCTCTAGTGCAACC....................................................................................... 21 2 1 22.00 22 22 0 0 0 0 0
.................................................CGGTGCGTCTCTAGTTCAACT....................................................................................... 21 1 1 22.00 22 4 0 18 0 0 0
.................................................CGGTGCGTCTCTAGTGCCACT....................................................................................... 21 1 1 22.00 22 0 0 22 0 0 0
.....................................................................................ATCTATTGCACTTGAGACGGCCGA................................................ 24 2 1 22.00 22 22 0 0 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGAAAAAA........................................... 26 3 1 21.00 21 20 1 0 0 0 0
......................................................................................TCTATTGCACTTGAGACGGCCGAAAA............................................. 26 3 1 21.00 21 21 0 0 0 0 0
........................................................................................TATTGCACTTGAGACGGTCGAA............................................... 22 1 1 21.00 21 20 0 1 0 0 0
........................................................................................TATTGCACTCGAGACGGCCGAA............................................... 22 1 1 21.00 21 19 1 1 0 0 0
........................................................................................TACTGCACTTGAGACGGCCGACA.............................................. 23 2 1 21.00 21 21 0 0 0 0 0
........................................................................................TATTGTACTTGAGACGGCCGAAAA............................................. 24 2 1 21.00 21 21 0 0 0 0 0
........................................................................................TATCGCACTTGAGACGGCCGAAT.............................................. 23 2 1 20.00 20 20 0 0 0 0 0

Anti-sense strand reads

TTTATTTATTATCACAAACACGAAAAATTTTTTTTGTAGATGTTAAAAGGCCACGCAGAGATCACGTTGAGAACCAAAAAATATGTTCATAACGTGAACTCTGCCGGCTTTATATCACCTAGATTCGCCGATATTGGCTTTTCAAAAGTCCTCGATT

***********************************.((((((.((.((.((((.((((((.(((((((..((((..........))))..))))))).)))))))))).)).)).)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V039

embryo

 M044

female body
.............................................AAAGGCCACGCAGAGATCACGTTGA....................................................................................... 25 0 1 1.00 1 0 1 0
...............................................AGGCCACGCAGAGATCACGTTGA....................................................................................... 23 0 1 1.00 1 1 0 0
................................................GGCCACGCAGAGATCACGTTGA....................................................................................... 22 0 1 1.00 1 0 0 1
............CACAGACACGAAAAAATTTT............................................................................................................................. 20 2 4 0.25 1 1 0 0
....................................................................................GTTCATAACGTGAACTATA...................................................... 19 2 4 0.25 1 0 1 0
......................AAAAATTTTTTCTTTAGGTGTTAA............................................................................................................... 24 3 7 0.14 1 1 0 0
...........................................................................................................CTTTATGTCACGTAGAGTC............................... 19 3 14 0.07 1 0 1 0
.......................................................CCGAGATCCCGTTGATAAC................................................................................... 19 3 19 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13266:4132639-4132795 + dan-mir-312 Known_mirbase AA-ATAAA----------------------TAAT-AGTGTTTGTGCTTTTTAAA-AAAA--------ACATCTACAATTTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTT---TTTATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGAT-CTAAGCGGCTAT-AACCGAAAAGTTTTC----------------AGGAGCTAA
droBip1 scf7180000396427:2575357-2575512 + AA-ATAAT----------------------AA-T-TGCAAGTGTGTGTGTTTGG-ATTT--------ATGTCTACAATTTTCGGGGTCATCTCCAGTGCAAATCTTGGTTT---TTCCAACAAGAATTGCACTCGAGACGGCCAGAATATTGTGGAT-CTATGCAGCTAC-AAGCCGAAAGTGTTT----------------AGAAGTTAG
droKik1 scf7180000302471:941790-941923 - AG-ATAAA----------------------CAAAAGC---------------------T--------CCGGCCGTAAAGGTCTGTGCTGTTTGAGGTGCAAATCTGTGGT----TAATAGCCAGAATTGCACTTGAAACGGCCAGATCAAGGCGGCC-CAAAACATCGCAA---CA-AAAATTTAG----------------ACAATTGTT
droFic1 scf7180000454039:1776249-1776396 - TA-AAGTT-T--GCAAGTTTTAAT-------TAAATCG-------------GGAAAA-C--------CAATTTCGAGTGTTTCGGTCGTCTTGGGTGGCAATACTAAATTAACTTTATGGCTAGCATTGCACTTGAGACGGCCGAAATGCTTTAAATTTATAACATCTAAG---CA---------------------------AGACCCAA
droEle1 scf7180000491201:736218-736346 - AT-TTAAA----------------------TTTTATCT-------------GTG-TA-C--------TAATTTCTGGTGTTTCGGTACGTCTATGGGGCAATTCTGCGTT----TTCTGGTTAGCATTGCACTTGAGACGGCCGCAACACTTTGGAATAAAAACATTTAAG---AC-----------------------------AGTTTA
droRho1 scf7180000780104:82303-82439 - TATTTAAA----------------------TATAATCT-------------GCG-AA-C--------AAATTTCTGGTGTTTCGGCTCGTCTCAAAAGCAATTCTTCGTTTT--TCTTGGCTAGCATTGCACTTGAGACGGCCGCAATACTTTGGATTTAAAACATTTAAG---CAA---GTTT---------------------ATTGAA
droBia1 scf7180000302291:2816207-2816326 + GG-TGATA----------------------TAGG------------------------C--------ATATTTTTGGCGTTTCGGTCCGTCCCAGGAGCAATCCTGTATT-----TCCGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTGAAAA-CAAG--------------GAAAGTGCAT----------------AGAAACTAA
droTak1 scf7180000415401:99957-100087 - GT-GTAAA----------------------AA-T-TGT-------------GTG-TGTA-----AACATATTTCTGGTGTTCCGGTCCGTCTCAGGCGCAATTCTGAATT-----TTCACCTAGTATTGCACTTGAGACGGCCGGAATACTTTAAATACGAAACATAAAAA---TG----------------------------AAAATAA
droEug1 scf7180000409474:1490038-1490153 + AA-ATAA-------------------------------------------------------------AATTTCTAGTATTTCGGTTCGCCTTTTGTGCAATTTTAGAGT----C--AATAGAAAATTGCACTTCAGACGGCCGGATGACTTGAAATACAAAACATCTTAA-AATC-------TAG-------------------AAAACT
dm3 chr2R:16471535-16471675 - dme-mir-312 Known_mirbase TA-ACAATTA--GCATTTTTAAATT---ATTAGA-AAT-------------GTG-AATT--------AAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAA-CGAATCATTTTATGAGC------------------------------------
droSim2 2r:17041002-17041124 - dsi-mir-312 Known_mirbase TT-ATTAT----------------------AAAT-AAT-------------GTG-AATT--------AAGTTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATT-GAGC------------------------------------
droSec2 scaffold_1:14025704-14025860 - dse-mir-312 Known_mirbase TT-ATTAT----------------------AAAT-AAT-------------GGG-AATT--------AAGTTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATT-GAGCAAAGTAAT--TAGTTTTTTTTCCTTGCAATAGGCGG
droYak3 2R:12724649-12724800 + dya-mir-312 Known_mirbase AA-TTAC------CATATTTATATTATTATAAAT-AAA-------------GTT-A--CAAATT---GCGTTTGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTA---TTAAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CGAATCATTTAAA---CAA----CGC---------------------ATTAAA
droEre2 scaffold_4845:10616676-10616815 - der-mir-312-2 Known_mirbase AA-TTAC------CATATTTATATA---ATTGAT-TAT-------------GTG-AATT--------AAGTTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTT-TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CAAAACATTTTAA------------------------------------ATAA
dp5 3:8679839-8679856 + GA-ATTAT----------------------TGAT-CGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:2566570-2566587 + AA-ATTAT----------------------TGAT-CGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:13669076-13669229 - dvi-mir-313 Known_mirbase TG-AATTATAGTGCAATTTTCTAT-------------T-------------GTC-AAAA--------GTATCGCTAGTTTTTCGGCTGTGGTCAGTGTCAATTCTTTTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGGAAAAATTGAGATTC----CATTTAA-AACACAAGATTGCGC----------------ACAATTCAA
droMoj3 scaffold_6496:9090666-9090737 - dmo-mir-313 Known_mirbase TT-----------------------------------------------------------------------------TTCCGGTTGTGAATTGTGTCAATTCTTTTTA-----TTTTACAAGTATTGCACTTTTCACGGCCGGAAAAAGGAT---------------------------------------------------------
droGri2 scaffold_15245:17564245-17564377 + dgr_31 candidate-rescued TA-TTAG------GATATTTATTT-----------TTT-------------GTT-AAGC--------AAATCTTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTTA-----TTTGACAAGCATTGCACTCTTCACGGCCGGATAAATGAGGGT-CTATGT---TAAA---CAAAAT--------------------------TAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AA-ATAAA----------------------TAAT-AGTGTTTGTGCTTTTTAAA-AAAA--------ACATCTACAATTTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTT---TTTATACAAGTATTGCACTTGAGACGGCCGAAATATAGTGGAT-CTAAGCGGCTAT-AACCGAAAAGTTTTC----------------AGGAGCTAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................TATTGCACTTGAGACGGCCGAAA................................................................231108255.0010825514561054241248131068
............................................................................................................................TATTGCACTTGAGACGGCCGA..................................................................211103377.0010337739189642025834838820
............................................................................................................................TATTGCACTTGAGACGGCCGAA.................................................................22131472.0031472147328985720262626
............................................................................................................................TATTGCACTTGAGACGGCCGAAAA...............................................................24125826.0025826557245087346210
............................................................................................................................TATTGCACTTGAGACGGCCG...................................................................20110555.00105558509044492151459
..................................................................................CGGTGCGTCTCTAGTGCAACT............................................................................................................2113186.00318612119251130172
............................................................................................................................TATTGCACTTGAGACGGCC....................................................................1912545.00254523249027140
............................................................................................................................TATTGCACTTGAGACGGCCGAAT................................................................2312291.002291412148555420
............................................................................................................................TATTGCACTTGAGACGGCCGAT.................................................................2211407.001407351307303302
.............................................................................................................................ATTGCACTTGAGACGGCCGAAA................................................................2211249.0012497311714010
.............................................................................................................................ATTGCACTTGAGACGGCCGA..................................................................2011115.0011152668369130
............................................................................................................................TATTGCACTTGAGACGGCCGAAG................................................................2311110.0011109108316110
............................................................................................................................TATTGCACTTGAGACGGCCGAAC................................................................231973.009731294316020
............................................................................................................................TATTGCACTTGAGACGGCCGAAAT...............................................................241616.00616659114140
............................................................................................................................TATTGCACTTGAGACGGCCGAC.................................................................221526.00526351211000
.............................................................................................................................ATTGCACTTGAGACGGCCGAA.................................................................211458.004581033502030
..................................................................................CGGTGCGTCTCTAGTGCAACC............................................................................................................211440.0044014372000
............................................................................................................................TATTGCACTTGAGACGGCCGG..................................................................211375.0037517117131110
............................................................................................................................TATTGCACTTGAGACGGC.....................................................................181341.0034193283010
............................................................................................................................TATTGCACTTGAGACGGCCGAAAC...............................................................241341.00341332412011
............................................................................................................................TATTGCACTTGAGACGGCCGT..................................................................211335.0033517269252193
.............................................................................................................................ATTGCACTTGAGACGGCCGAAAA...............................................................231314.00314342791000
..............................................................................................................................TTGCACTTGAGACGGCCGAAA................................................................211215.0021552100000
............................................................................................................................TATTGCACTTGAGACGGCCGAG.................................................................221203.00203131759141
..............................................................................................................................TTGCACTTGAGACGGCCGA..................................................................191178.00178151620010
............................................................................................................................TATTGCACTTGAGACGGCCGATT................................................................231170.00170514521161
..................................................................................CGGTGCGTCTCTAGTGCAACTCT..........................................................................................................231162.00162123304257
............................................................................................................................TATTGCACTTGAGACGGCCGAAAG...............................................................241156.0015631485000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAT..............................................................251130.0013011235010
..................................................................................CGGTGCGTCTCTAGTGCAACTC...........................................................................................................221129.00129862015350
..................................................................................CGGTGCGTCTCTAGTGCAAC.............................................................................................................201127.0012709631000
............................................................................................................................TATTGCACTTGAGACGGCCGC..................................................................211112.0011206546100
............................................................................................................................TATTGCACTTGAGACGGCCA...................................................................20199.009911853000
............................................................................................................................TATTGCACTTGAGACGGCCC...................................................................20197.00970925000
.............................................................................................................................ATTGCACTTGAGACGGCCG...................................................................19191.009137530010
............................................................................................................................TATTGCACTTGAGACGGCCGAACA...............................................................24174.00744637000
..............................................................................................................................TTGCACTTGAGACGGCCGAA.................................................................20173.00733690010
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAC..............................................................25169.00692652000
..............................................................................................................................TTGCACTTGAGACGGCCGAAAA...............................................................22166.00664620000
............................................................................................................................TATTGCACTTGAGACGGCCGAATA...............................................................24162.00621574000
...............................................................................................................................TGCACTTGAGACGGCCGAAA................................................................20160.00601590000
............................................................................................................................TATTGCACTTGAGACGGCCT...................................................................20155.00556386041
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAG..............................................................25149.00491471000
............................................................................................................................TATTGCACTTGAGACGGCCGAAGA...............................................................24143.00431402000
............................................................................................................................TATTGCACTTGAGACGGCCGATC................................................................23137.00370343000
...............................................................................................................................TGCACTTGAGACGGCCGA..................................................................18135.00351340000
............................................................................................................................TATTGCACTTGAGACGGCCGTT.................................................................22131.00313251020
............................................................................................................................TATTGCACTTGAGACGGCT....................................................................19129.00290281000
................................................................................................................................GCACTTGAGACGGCCGAAA................................................................19127.00270270000
.............................................................................................................................ATTGCACTTGAGACGGCCGAAT................................................................22126.00260260000
.............................................................................................................................ATTGCACTTGAGACGGCC....................................................................18125.00253220000
............................................................................................................................TATTGCACTTGAGACGGCCGATG................................................................23124.00242180040
droBip1
AA-ATAAT----------------------AA-T-TGCAAGTGTGTGTGTTTGG-ATTT--------ATGTCTACAATTTTCGGGGTCATCTCCAGTGCAAATCTTGGTTT---TTCCAACAAGAATTGCACTCGAGACGGCCAGAATATTGTGGAT-CTATGCAGCTAC-AAGCCGAAAGTGTTT----------------AGAAGTTAGSizeHit CountTotal NormTotal
No Reads
droKik1
AG-ATAAA----------------------CAAAAGC---------------------T--------CCGGCCGTAAAGGTCTGTGCTGTTTGAGGTGCAAATCTGTGGT----TAATAGCCAGAATTGCACTTGAAACGGCCAGATCAAGGCGGCC-CAAAACATCGCAA---CA-AAAATTTAG----------------ACAATTGTTSizeHit CountTotal NormTotal
No Reads
droFic1
TA-AAGTT-T--GCAAGTTTTAAT-------TAAATCG-------------GGAAAA-C--------CAATTTCGAGTGTTTCGGTCGTCTTGGGTGGCAATACTAAATTAACTTTATGGCTAGCATTGCACTTGAGACGGCCGAAATGCTTTAAATTTATAACATCTAAG---CA---------------------------AGACCCAASizeHit CountTotal NormTotal
No Reads
droEle1
AT-TTAAA----------------------TTTTATCT-------------GTG-TA-C--------TAATTTCTGGTGTTTCGGTACGTCTATGGGGCAATTCTGCGTT----TTCTGGTTAGCATTGCACTTGAGACGGCCGCAACACTTTGGAATAAAAACATTTAAG---AC-----------------------------AGTTTASizeHit CountTotal NormTotal
No Reads
droRho1
TATTTAAA----------------------TATAATCT-------------GCG-AA-C--------AAATTTCTGGTGTTTCGGCTCGTCTCAAAAGCAATTCTTCGTTTT--TCTTGGCTAGCATTGCACTTGAGACGGCCGCAATACTTTGGATTTAAAACATTTAAG---CAA---GTTT---------------------ATTGAASizeHit CountTotal NormTotal
No Reads
droBia1
GG-TGATA----------------------TAGG------------------------C--------ATATTTTTGGCGTTTCGGTCCGTCCCAGGAGCAATCCTGTATT-----TCCGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTGAAAA-CAAG--------------GAAAGTGCAT----------------AGAAACTAASizeHit CountTotal NormTotal
No Reads
droTak1
GT-GTAAA----------------------AA-T-TGT-------------GTG-TGTA-----AACATATTTCTGGTGTTCCGGTCCGTCTCAGGCGCAATTCTGAATT-----TTCACCTAGTATTGCACTTGAGACGGCCGGAATACTTTAAATACGAAACATAAAAA---TG----------------------------AAAATAASizeHit CountTotal NormTotal
No Reads
droEug1
AA-ATAA-------------------------------------------------------------AATTTCTAGTATTTCGGTTCGCCTTTTGTGCAATTTTAGAGT----C--AATAGAAAATTGCACTTCAGACGGCCGGATGACTTGAAATACAAAACATCTTAA-AATC-------TAG-------------------AAAACTSizeHit CountTotal NormTotal
No Reads
dm3
TA-ACAATTA--GCATTTTTAAATT---ATTAGA-AAT-------------GTG-AATT--------AAGTTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTTAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAA-CGAATCATTTTATGAGC------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
............................................................................................................................TATTGCACTTGAGACGGCCTGA.................................................................221823125.0082312570714301582511311603800000200109622155716000134031314014533853295533511551411339526142008306150040457264063430234264031597512920003744532030000000000000000023111323475024502143390333542721438850141913164305464553143255461545540812568714124501100000120628101410234380145120462262650064929496232861944539133714558173137232713840645127060000027130531219013002219143112442010008218203834193519809981992442411832012025442295235638997235123501541188481248342215562425013465180321492680761302916723850013011400622717181003201232012264116610622430120218174102532312021548339027187105457018789632152856710041251966682102164052525418744492201784112553302951562231611473124260624491231311912428248712039685479176375136175693605366275687151647837
............................................................................................................................TATTGCACTTGAGACGGCCTG..................................................................211229467.00229467000134395715501100000000178407692605022000000022708634898615036521099336304402446691196369168341174831236000243080000000000000000000001568159215254917023133116818149371211323662051121058441081891943680000000100102210041528111123162841872620223614461014124918131467815100102910412073623000000000602402001500000000000048501063128786952024735058513510000046510626910952735420001114140387232341001888114013811216862832166650011000031031901990121225006517900131400020105430257594103321807138911083132091022235861179310316293000127472518697142843057607167581678315211912152170315108137851395255012794611518241180647324224636387202926333309642
..................................................................................TGGTTCGTCACAAGGGCAATTCT..........................................................................................................23172068.007206800010519431671130000000055404533000008241058410716371102212492431103511994115228261495186710001200000000000000000011000424173355239351000371011131603332713340046347813389313919310800000000001000124541374621119117506446541723207556479478206503515176682400000000000012020004920000401000112111036828324615194941375454101062973431620125102000208011041342789094771434162011487091044965000300008844039000015102308105500000205007470002131510365226422718334283499001170000111767129172465229010471696586240165666300404666127500114845662141573190040610051311689116631911104
............................................................................................................................TATTGCACTTGAGACGGCCTGAA................................................................23170905.0070905000025285131206000000007415562380200000000791771142967824316202771844430219265190172188303600000000000000000000000000000637187522465696000055028919632204118300950793403926411528701000000001000020026801823580826748035613881472692391611032515017230612100000000000230600160100010000005525301317121902169402387501201306300758201300023219864743089962263226603331232929434338110020571400725604200002400190300030000000200332100125833211282382912524183132346460041000000200627770174388146981631861521002554120015110216000744200208152762314282203109
............................................................................................................................TATTGCACTTGAGACGGCCTGAAA...............................................................24159402.00594020000032430640100000000561631001000000000011124584388902141440273131293617229178101711715100000000000000000000000000007122443522226590001211161216690020120000365304715192153178000000000001100000303577250681058120946825427317954298196291391011687000000000000440300130110000000000268499921543317927619332010583100252330800013233497143273227241661189132021366353570041020033390200000020015010004000000000021000140035529362949114039214441588002000000101822000403336165361416101400328111941990000400100000012289918174559100100
............................................................................................................................TATTGCACTTGAGACGGCCT...................................................................20130804.00308040000107173305200000001973212194000000040027031345412216485331431455010182772839614696360004210000000000000000000000128259295165002033059226300078260218361627704111700000000000111003200002121555350244526915411626283100278187179770000000000000000005000000100000235618854758500216214683000004271314764500011327416310274525467124441252217300040000283112400000200016016004100000001640951000079418859182732655214746315210042010000824271520452554513628144344414802121148558011058001501220130459033688126107010
..................................................................................TGGTTCGTCACAAGGGCAATTC...........................................................................................................22128166.0028166000002618310300000000333916343000020100378366135521990664213751480871051249024000516000000000000000000100020528403517301011007503120125282510223851348301007000000000000100106711778367342471912102771321972411698415871431991040000000000010000001200000600000223414555416537102182253613010000117424399113718000935396173454136742002181781221341650110000016190900000100904001200000002106710001291048274164717013283052153003800200055428983249233055319122964274110154017431811040107205441330018426196330152204500114
............................................................................................................................TATTGCACTTGAGACGGCCTGT.................................................................22125331.002533100000015000000000000850895200000000001149664851422060766020541576173581161046500000000000000000000000000005276744531002061721990114210002103101540270100001000001000000000205737929220296811011259976237765994400000000100100100000000010000001584105865806052472273326400000679421121000004514179400498612415466125591291003000033150160010111060270020000001010003862004451048671212752816694111562003800000046191632151703093868933616661350034695138700131240026017212163411002362071451201110
............................................................................................................................TATTGCACTTGAGACGGCCTGAT................................................................2319478.00947800000252310400000000112410230000000000327211317418273527735113226213933120006477240000000000000000010000471351304500100003601111007402001380516190017000000000000000000041250158810958192646384312124343292600000000000100000040000000000000247471241100070510710000002422002000000492031957152921882382021551522314001600069060000010030100200000000000160000129371286774220711267101600170000001195121267133972261213800421911681102300502100341015563325300112
...................................................................................GGTTCGTCACAAGGGCAATTCT..........................................................................................................2218085.0080850000000000000000000000000000000000000100000000000010000000000000000000000000000002006100000000000000000000000001000000000000000000000817040000000311000000000000000000000000000000000000000001102001000000000100000000010130461426731416498391591135800000000000000000000000000000000000000000032221411082200000000020000000030000004101000100000000001001000000
............................................................................................................................TATTGCACTTGAGACGGCCTGC.................................................................2215031.0050310000000200000000000015141340000000000312501623181511721512131615852721920910450000000000000000000000000000905251300000003140000010000020002001101000000000210000163380436464649121920980273254430000000000000010000000000000000010642000013700000912000000000694116710137751700000000610310201100102000000000002008100036256362084839273515005000000115210002843244811923120084162510070080000100121078000000
..................................................................................TGGTTCGTCACAAGGGCAATT............................................................................................................2114034.00403400000113201300000000810482200010000016713255216831531291576200010000000000000000000000004173947001020066291600120200135213117105300000000000020108535114045346309820242625115102826220000000000001000000101000000000045271902735003531112200010112916053000006163481641942551113435274300010000711020000030000300010000000100900001279251192106141200060000006533101543631761110168001271672060101410402100201114372622100000
.............................................................................................................................ATTGCACTTGAGACGGCCTGA.................................................................2113611.00361100000000000000000000211700000000000415370232152365461000131160000000000000000000000954121200100004040000200000200111003000000000000000000411160112914114172115167300000000000000000000000000000000011310004221010004400000000020221182764619352433380000000000010000010010000100000000000160000886659558958444635810050000002210100126417730200004235500001700352000000281031000015
..................................................................................TGGTTCGTCACAAGGGCAATTCTA.........................................................................................................2413494.00349400000116100000000000311200000000000324948011432111159851100000000000000000000000000000502025570001000011181000180000108052501120000000000000000001500502564664391228432170101426600000000000000000000000000000000923182310264327000003677223100000141360221240293330436200000000020100000000000000000000000000000019150515121251510800000000084110051254973113012001703085390001002000000021602540000000
............................................................................................................................TATTGCACTTGAGACGGCC....................................................................1912382.0023820000000000000000000072747300000000001581165277611853360131181110700000000000000000000000000002130200000000105000000000000111000000000000000001081200002215433610750181719226641430000000000000000000000000000000065277330004903122000004730314080001452731681112010110000000470200000200305001000000003001700003456431042677451230031000004465001031373059326117008139460003001600003081021413100003
............................................................................................................................TATTGCACTTGAGACGGC.....................................................................1812029.0020290000000000000000000013432120000000000012910101635128169411472722195000241000000000000000000000010303000000000220000110000100110010000000000000000480000039331728112515161492974030000000000000000000000000000000023346342000502531000007980200000059773364000000000000000096020000000000200000000000210140110305920492162431160030000005672102217313550154300745443100600700001059392414201000
............................................................................................................................TATTGCACTTGAGACGGCCTGG.................................................................2211691.001691000000112100000000000111000000000002151121515930171023029147160000000000000000000000000000403161000000200140000001001150731200700000000000000000002105001186643444018550000000000000000000000000000000081120000201100000330000000002100101001041270000000032016000000002000000000000000041000396541813517550223002000000490020014401161001100402823000400920000002822000000
............................................................................................................................TATTGCACTTGAGACGGCCTGAC................................................................2311449.001449000000001000000000001512000000000013103410191262704209711400000000000000000000000000001207680000000102100000000012201100301000000000000000022001012021173835213545000000000000000000000000000000001176300001400000063000000000102242301328423126213500001040002020000010000000000000000000300002277411193712538129007000000322000018194029200200441429000000500000013444000000
..................................................................................TGGTTCGTCACAAGGGCAAT.............................................................................................................2011405.00140500000002000300000000012460000000000491002200220220002511000000000000000000000000000060101280000300130215002104001000010220120000000000000100410000000163121523636100550000000000700000001000000000000050386360025042900000340000400009231976395140566001000002100000000001010000000000000000000013119016519001000000112100100498311900162522000300600003174531000000
...................................................................................GGTTCGTCACAAGGGCAATTC...........................................................................................................2111273.0012730000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000001100000301010000010000002000000000000000000000000000000000000000000000000000000000002000154983945230215205233000000000000000000000000000000000000000000371317150000000000000000013000000240000000100000000100000000
............................................................................................................................TATTGCACTTGAGACGGCCTT..................................................................2111123.00112300000000000000000000361037010000000001541422394010122241208000000000000000000000000000081100100000003014000000000000022007000000000000010000000000334116281116236232220000000000000000000000000000000015233100011012100000480010000002331313524340120001000020027000010000010000000000000031000119129113913001000000470000810532081622471000164300010000000002122515000000
.............................................................................................................................ATTGCACTTGAGACGGCCTGAA................................................................221979.009790000000200000000000001000000000000000002052102021000000000000000000000000000000005003100000000011000000000000102001000000000000000000000000033540032002000000000000000000000000000000000001230000022000000000000000003612241032242519282000010000000000001000000000000000000007000013120261511211211149006000000701000516320001000121490005001100000000322000000
..................................................................................TGGTTCGTCACAAGGGCAATTCA..........................................................................................................231929.009290000003410020000000034120000000000020400022002134332100000000000000000000000000002817162226000000020611000000001401372028000000000000000000140000114161325821042130930000000000000000000000000000000056377400152000009110020200007431212225510000000003000000000000000000000000000000000414732617021000000000386100149136900000044571150001000100000141058000000
............................................................................................................................TATTGCACTTGAGACGGCCTGAG................................................................231914.009140000000000000000000000000000000000365644043313131048810000000000000000000000000000025420000000101000000000001012100400000000000000000001001018531645100302251000000000000000000000000000000004587000307000000970000010004713107112010911190000000030010000000010100000000000000100008241038102913490020000003931201112325431120006144600007001400000005211514000000
............................................................................................................................TATTGCACTTGAGACGGCCTGATA...............................................................241842.008420000000210000000000021000000000000153626151205071010620000000000000000000000000000502215000001020400000000007300110010000000000000000000000001202915145513020110000000000001000001000000000000022410400020200000048000000000432014917111012132000001100100000000000000000000000000000000010341536185915450000000002000000519633100000672337000100100000006833000000
............................................................................................................................TATTGCACTTGAGACGGCCTGATC...............................................................241755.007550000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000100000000000000000000000000000004000001000000000000000000000000000000000000001000000000000000000000000000100101121020000615107000000000000000000000000000000000000010004040000000002000001010000000101000000000000000000000000
............................................................................................................................TATTGCACTTGAGACGGCCTA..................................................................211721.007210000002400010000000001480000000000213646082003031460100000000000000000000000000001360210000000000110000010000101110010000000000000000000000001261625355116312351000000000000000000000000000000006105100020300000004000000000202526462339000001001101000000002010000000000010000000175717411151314000000000200000312724181520005313210000001200000061313000000
..............................................................................................................................TTGCACTTGAGACGGCCTGA.................................................................201652.006520000000000000000000013000000000000020003020000012002000010000000000000000000000001509101000000001071000000000100401103000000000000000000000040011000212001140000000000000000000000000000000000401000001800000220000000004102135302312614200000000000000000000010000000000000000000001519942724147400100000020000018150000001113000100310000000011000000
................................................................................................................................GCACTTGAGACGGCCTGA.................................................................181651.006510000000000000000000010140000000000000000220201010221040000101000000000000000000000000000000000000000000000000000000000010000000000000000000201564005311021000000000000000000000000000000000038000000000000005200000000086216010100000000000000010000000000000000000000000000002516916646571910300000000090000098020000002336000000100000000100000002
............................................................................................................................TATTGCACTTGAGACGGCCTGAAC...............................................................241651.00651000000000000000000001020000000000003020312560040015344000000000000000000000000000001123300000001010000000000010002001000000000000000000021000051466014120202200000000000000000000000000000002251000000000000046000000000400017129122628202900001042900110000000000100000000000000000000010285175184130000000001610000132171000000018413000000000000002311000000
..................................................................................TGGTTCGTCACAAGGGCAA..............................................................................................................191613.00613000000000000000000000101800000000004000000211100000211000100000000000000000000000040013000010000090002010000000401010000000000000010020010012230050110000000000000000002000000010000000000035114812003006800000000201420000068665051100230000000001000000010010000000000000100300000506291400000000040100100154298009580001001920004091120000100
............................................................................................................................TATTGCACTTGAGACGGCCTGTA................................................................231578.0057800000000000000000000010200000000000221300011042885133000000000000000000000000000043187800000000032000001000100102001200000000000000100001001017112412002001730000000000000000000000000000000038232000015026000000530000000002122104111318000000000002000000001000000000000000000000830422741530000000000100300044316001100444110000001000000101014000000
.............................................................................................................................ATTGCACTTGAGACGGCCTGAAA...............................................................231551.0055100000001000000000000000000000000000100000000010021101000000000000000000000000000010024000000000000000000000001000000000000000000000000100000437021011000000000000000000000000000000000000011000000203000003100000000012131022541317819000000000000000000000000000000000000020000139015737875470010000002000000113101000008126000300000000000111000000
.............................................................................................................................ATTGCACTTGAGACGGCCTG..................................................................201549.00549000000000000000000001013000000000072000001011002013000000100000000000000000000000600230000100101000000000001000000000000000000000000001005041030030620210030000000000000000000000000000000020330000002000000100110000015321603121430000000000000000000000000000000000000000002188363851443000000000800001115430030000101313010100600000002945000000
............................................................................................................................TATTGCACTTGAGACGGCCTGATT...............................................................241547.00547000000000000000000000000000000000001022102020000001100008714579000000000000000000000000042000000010010100200000000021000000000000000000000000002057002001202000000000000000000000000000000000032011000081190000001000000000011011368937020000000000000000000000000000000000000000006534332160000000002000001121100000703000100100001020100000000
............................................................................................................................TATTGCACTTGAGACGGCCTGAAG...............................................................241460.004600000001100000000000010000000000000031202111202001020000000000000000000000000000005013240000000002000000000001000200000000000000000000002100003109012112001310000000000000000000000000000000021300001010000001801010000000001310131216176230000000002000000000000000000000000000000002193117215110000000002000000614620000000292519000000000000006684000000
............................................................................................................................TATTGCACTTGAGACGGCCTC..................................................................211448.004480000000000000000000000000000000000020100093100001160000000000000000000000000000000100000000001000000000000000000000000000000000000000000010113743539220634100000000010000000000000000000000000000000000000052000000000001401041040000000000000000000000010000000000000000000929101341881400100000038000024629010193200434000000100000004513000000
............................................................................................................................TATTGCACTTGAGACGGCCTGTAA...............................................................241442.00442000001000000000000000120000000000010012012110101321130000000000000000000000000000160565000000000210000000000100010030000000000000000000100001161401205022000000000000000000000000000000000000282101000303000000950000000000000328951951400000000000000000000000000000000000000000042171411420100000000004100002021100300043412000000000000003418000000
...................................................................................GGTTCGTCACAAGGGCAATTCTA.........................................................................................................231425.0042500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000006116107626183120000000000000000000000000000000000000000000000000000000000000000000001000000110000000000000000000000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTT.........................................................................................................241407.00407000000010000000000000000000000000012110002030203300000000000000000000000000000000115202000010010000000000000000010000000000000000000000200000530010110004200000000000000000000000000000000011014400031150000001000000000000601285971126000000002000000001001000000000000010000000211016012216000000000900002015331131001726330004001110000025633000000
............................................................................................................................TATTGCACTTGAGACGGCCTGCA................................................................231405.004050000000100000000000021000000000000025111012121011039191132000000000000000000000000000011132000000000000000000000001010010000000000000000000200000264301400002330000000000001000000000000000000141310001010000001100000000000001102230400000000110100000000100000000000000000000033152253553100000000014000001813213000000101000000000000000000000000
............................................................................................................................TATTGCACTTGAGACGGCCTGACA...............................................................241402.0040200000002000000000000023000000000000102140121202207261120000000000000000000000000000005175000000001000000000000202200010000000000000000000000005188221602001320000000000000000000000000000000010000000100000001100000000000003344335700000000200000000000000000000000000000000054831944531300000000018000001111280000001431000000000000001701000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTAA........................................................................................................251394.003940000000300000000000000000000000000100001200100000100000000000000000000000000000000331281140000000001000000000018010400100000000000000000003100000661162230100000000000000000000000000000000000003204000010000000760000000006000305344570000000000000000000000000000000000000000001702010120000000001500002351019000000163449000000000000011022000000
...................................................................................GGTTCGTCACAAGGGCAATT............................................................................................................201392.0039200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001003772161650604491000000000000000000000000000000000000000000000101010000000000000000000000000000000000100000000000000000
.............................................................................................................................ATTGCACTTGAGACGGCCTGAT................................................................221372.003720000000000000000000001020000000000000000101010010000000040000000000000000000000001004000000001001000100000000011000000000000000000000000000011000010001000000000000000000000000000000000001310000202000000010000000002412311763420000000001000000000000000000000000000300005331773649562002000000100000311260010001503000100101000000000000000
..................................................................................TGGTTCGTCACAAGGGCAATTCAA.........................................................................................................241359.003590000001000000000000010000000000000111010021002000100000000000000000000000000000001338017000000000200000000000100110020000000000000000000300000490342410030000000000000000000000000000000000013150001007000002150000000000000141329450000000000000000000000000000000000000000002721001214000000000151000113723000000211955000000000000003807000000
..................................................................................TGGTTCGTCACAAGGGCAATTCC..........................................................................................................231349.003490000000001020000000010000000000000000000001211022112100000000000000000000000000000110000000000000000000000000000000000000000000000000000100040021123301601000000000000000000000000000000000062400002100000041000000001631520103133000000000001000000001000000000000000000000115330115538000000000400100561621000000122722000400200000005731000000
............................................................................................................................TATTGCACTTGAGACGGCCTGCAA...............................................................241298.00298000000000000000000001000000000000000023108900000257401000000000000000000000000000000002000000000000000000000000000010000000000000000000000000108540040100122000000000000100000000000000000001000000000100000030000000000000001201010000000011000000000000000000000000000000006322149341150000000001300000112288000000322000000000000000200000000
...............................................................................................................................TGCACTTGAGACGGCCTGA.................................................................191296.002960000000000000000000012020000000000002100021000003100000000000000000000000000000000012320000000000000000000010000000000000000000000000000000000110112000006000000000000000000000000000000000000000000000000010000000000420111000010000000000000000000000000000000000000000000141056271226460000000000000003400000000321000000000000000000000000
..................................................................................TGGTTCGTCACAAGGGCA...............................................................................................................181282.002820000000000000000000010060000000000002000001000000101100000000000000000000000000001000100001000001000000000000000000000000000000000034490000050100010310000000000000000000000000000000000000081112000707001000010011000001271818000001000000000000010000000000000000000000110100000113065800000000030100402141100007510001000000001121020000000
............................................................................................................................TATTGCACTTGAGACGGCCTGAAAT..............................................................251251.0025100000001000000000000000000000000001103100100000010000000000000000000000000000000000643000000000110000000000001030000000000000000000000000000101200011010000000000000000000000000000000000000410190000110170000005300000000000002321311470000820000000000000000000000000000000000000723112140000000008000010211200000911000000000000001110000000
............................................................................................................................TATTGCACTTGAGACGGCCTTT.................................................................221160.0016000000000000000000000014170000000000001000010011002000000000000000000000000000000003230100000000024000000000000010001000000000000000000000000024111000210000000000000000001000000000000000011001410005060000000100000000000002100114020000000000040000000000200000000000000000000110030400000000030000020402100001310000000100001010000000000
..................................................................................TGGTTCGTCACAAGGGCAATTA...........................................................................................................221156.00156000000010002000000001101200000000002000120040010062300000000000000000000000000000010303000010020011000000000300100010000000000000000000000000130001011000010000000000001000000000000100000090170100100200000000000000000100100000002000000000000000000000000000000000000000000010307240000000001000001124300100156000000000002011110000000
............................................................................................................................TATTGCACTTGAGACGGCCTGGA................................................................231150.00150000001021000000000000000000000000000100010100020260001000000000000000000000000000031250000000000100000000000103130030000000000000000000000100110010210000000000000000000000000000000000000000000000000000002000000000000100210111100000000000100000000000000000000000000000021117311780000000006100002232100000302000000000000000100000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTGC........................................................................................................251149.001490000000000000000000000100000000000002000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000101000200001000000040000000000000000000000000000000000001306011000000000000000000101000000000000000001000000000000000000000000000000000001020000000000020000001190100008654000000200000000300300000
..................................................................................TGGTTCGTCACAAGGGCAATTT...........................................................................................................221146.0014600000010000200000000000700000000000100000020000110000000000000000000000000000000000101000000000130000010000000000020000000000000000000000000110701101000000000000000000000000000000000000090250000502400000001000000000210500020204000000000001000000000000000000000000010000110302000010000000000000002302200142000000100000020010000000
............................................................................................................................TATTGCACTTGAGACGGCCTGAAAC..............................................................251141.0014100000000000000000000001000000000002002000401000131010000000000000000000000000000002020000000000100000000000010020000000000000000000000000000350010200000000000000000000000000000000000000000000000000000003100000000000002170410190000112000000000000000000000000000000000000192411010000000006000005194000000621000000000000000200000000
..............................................................................................................................TTGCACTTGAGACGGCCTG..................................................................191130.00130000000000000000000000000000000000000002000000000000000000000000000000000000000000101050000000000000000000000001000000000000000000000000002001000110000000000000000000000000000000000000000000000000200000000000000000111101231311000000000000000000000000000000000000000000638110062130000000002000001304000000271000000000000001000000000
............................................................................................................................TATTGCACTTGAGACGGCCA...................................................................201127.00127000010110000000000000030000000000040111003010000000010000000000000000000000000000000020001010000000000000000000110000000000000000000000000014200112100100000000000000000000000000000000000102000010200000000001000000001001000002000000000000000000000000000000000000000000133135170000000000020000031340000001243000000000000000401000000
............................................................................................................................TATTGCACTTGAGACGGCCTGGAA...............................................................241124.00124000000011000000000001010000000000000110000400000150101000000000000000000000000000001021000000000000000000001100110020000000000000000000000000231000100000000000000000000000000000000000000000010001000000001200000100000001001110000000000200300000000000000000000000000000021445215290000000004000001200000000011000000000000001101000000
.....................................................................................TTCGTCACAAGGGCAATTCT..........................................................................................................201116.00116000000000000000000000100000000000000020000001000100100000000000000000000000000000200100000000000000000000000000000000000000000000000000000012030010000000000000000000000000000000000000000001000000020000001100000000110000000000000000000100000000000000000000000000000000156323102200000000000000000012000000311000000200000000201000000
............................................................................................................................TATTGCACTTGAGACGGCCTGAGA...............................................................241100.001000000000200000000000000000000000000010020010001027000000000000000000000000000000000010100000000000000000000000000001000000000000000000000000050000000000000000000000000000000000000000000001000000000000000000000000000110034013120000000000000000000000000000000000000000002548211020010000001000000512000000235000000000000000302000000
..............................................................................................................................TTGCACTTGAGACGGCCTGAAA...............................................................22190.00900000000000000000000000000000000000000100000000000000000000000000000000000000000004000400000001020000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000030000000000000313256160000000000000000000000000000000000000000006281601020000000000000000001000000000000000000000000001000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTG.........................................................................................................24183.00830000000000000000000000000000000000300100000000001000000011100000000000000000000000000000000000000000000000000011000000000000000000000000000002400011000010000000000000000000000000000000000000000000010010510000000001100000001300000000000000000000000000000000000000000000200020100000000030000011380000008511000000300000001100000000
............................................................................................................................TATTGCACTTGAGACGGCCTTC.................................................................22182.008200000010000000000000110000000000000010000103000001360100000000000000000000000000000000000000000000000000000000000000000000000000010000000000010020101001100000000000000000000000000000000000100000000000000000000000000001000000000000100000010000000000000000000000000000000221000600000000020000072163000000000000000000000001000000000
droSim2
TT-ATTAT----------------------AAAT-AAT-------------GTG-AATT--------AAGTTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATT-GAGC------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................TATTGCACTTGAGACGGCCGA..................................................................211124803.0012480301166577401262208182302132942314797598145310924750225
............................................................................................................................TATTGCACTTGAGACGGCCGAA.................................................................22189294.00892942342763301871251852478715971140486128539824979111
............................................................................................................................TATTGCACTTGAGACGGCCGAAA................................................................23184398.008439808303625009108857630216275806241567907267000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAA...............................................................24136006.0036006005425600344133751575910778192715722039000
..................................................................................TGGTTCGTCACAAGGGCAATT............................................................................................................21111357.0011357013601912445399188918711111396474688128
............................................................................................................................TATTGCACTTGAGACGGCCG...................................................................2018251.008251755914937714042953338087485551901022936211
..................................................................................TGGTTCGTCACAAGGGCAATTCT..........................................................................................................2317910.00791000036188318231716181814294555066325001
..................................................................................TGGTTCGTCACAAGGGCAATTC...........................................................................................................2217132.00713200038106619111882231661960792403137203
............................................................................................................................TATTGCACTTGAGACGGCCGAAT................................................................2312596.002596031315903193368356901803535125001
............................................................................................................................TATTGCACTTGAGACGGCCGAT.................................................................2211685.0016850543001801983614211402018335000
..................................................................................TGGTTCGTCACAAGGGCAAT.............................................................................................................2011633.001633010939983232201156237517531005
............................................................................................................................TATTGCACTTGAGACGGCCGAAC................................................................2311221.00122102346002332593522375771321000
.............................................................................................................................ATTGCACTTGAGACGGCCGAA.................................................................2111218.001218002291002772592362361417417000
.............................................................................................................................ATTGCACTTGAGACGGCCGAAA................................................................2211192.0011920004700141165304307209478000
............................................................................................................................TATTGCACTTGAGACGGCCGATA................................................................2311064.0010640101001171324093212410940000
............................................................................................................................TATTGCACTTGAGACGGCC....................................................................191882.008820163111189212447485471217000
..................................................................................TGGTTCGTCACAAGGGCAA..............................................................................................................191868.00868010134112141268774242294000
.............................................................................................................................ATTGCACTTGAGACGGCCGA..................................................................201812.008120044721114124201193764541000
............................................................................................................................TATTGCACTTGAGACGGC.....................................................................181710.007100340145221193427453101000
................................................................................................................................GCACTTGAGACGGCCGA..................................................................171545.005450000001213538000000
..................................................................................TGGTTCGTCACAAGGGCAATTT...........................................................................................................221478.004780000000101301471001
................................................................................................................................GCACTTGAGACGGCCGAAA................................................................191451.004510000000163441000000
................................................................................................................................GCACTTGAGACGGCCGAA.................................................................181450.004500000001012446000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTA.........................................................................................................241445.00445000700333616314752061000
............................................................................................................................TATTGCACTTGAGACG.......................................................................161413.004130000003479390000000
............................................................................................................................TATTGCACTTGAGACGGCCGAAG................................................................231411.00411006300434614210751742000
.............................................................................................................................ATTGCACTTGAGACGGCCGAAAA...............................................................231381.00381000130042371459350010000
............................................................................................................................TATTGCACTTGAGACGGCCGT..................................................................211343.003430720001615302320173210000
..................................................................................TGGTTCGTCACAAGGGC................................................................................................................171325.003250000000232318000000
..................................................................................TGGTTCGTCACAAGGGCAATTCA..........................................................................................................231304.00304000300251212288343134000
..................................................................................TGGTTCGTCACAAGGGCA...............................................................................................................181303.003030001172100512960115000
..................................................................................TGGTTCGTCACAAGGGCAATTA...........................................................................................................221274.0027400030042232427429158000
..................................................................................TGGTTCGTCACAAGG..................................................................................................................151270.00270000000302653188000000
............................................................................................................................TATTGCACTTGAGACGGCCGG..................................................................211237.0023731411520024251117121202000
............................................................................................................................TATTGCACTTGAGACGGCCGTT.................................................................221191.001910210005667310160000
..................................................................................................................................ACTTGAGACGGCCGAAA................................................................171177.001770000000140172000000
..................................................................................TGGTTCGTCACAAGGGCAATTAAA.........................................................................................................241176.0017600040092856410110000
............................................................................................................................TATTGCACTTGAGACGG......................................................................171170.001700000001925161198001000
............................................................................................................................TATTGCACTTGAGACGGCCGAC.................................................................221163.00163351100016183339184016000
..................................................................................................................................ACTTGAGACGGCCGAA.................................................................161161.001610000001200158000000
..................................................................................TGGTTCGTCACAAGGGCAATA............................................................................................................211149.0014900000022126904114000
............................................................................................................................TATTGCACTTGAGACGGCCGAACA...............................................................241149.0014900100024135428511112000
.............................................................................................................................ATTGCACTTGAGACGGCCGAAT................................................................221148.001480004102320402228046000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAC...............................................................241146.001460031001716553123000000
..................................................................................TGGTTCGTCACAAGGGCAATTCAA.........................................................................................................241140.00140000110032514618027000
............................................................................................................................TATTGCACTTGAGACGGCCGC..................................................................211137.0013700100028445641615000
..................................................................................TGGTTCGTCACAAGGGCAATTCTGCA.......................................................................................................261114.0011400030029288143110000
............................................................................................................................TATTGCACTTGAGACGGCCGAATA...............................................................241103.00103000000312372122521000
............................................................................................................................TATTGCACTTGAGACGGCCGATAA...............................................................241102.001020000005427487515000
..................................................................................................................................ACTTGAGACGGCCGA..................................................................15194.00940000002331076000000
..................................................................................TGGTTCGTCACAAGGG.................................................................................................................16191.0091000000001288000000
............................................................................................................................TATTGCACTTGAGACGGCCGACA................................................................23185.008500000054212871118000
..................................................................................TGGTTCGTCACAAGGGCAATTAA..........................................................................................................23180.008000010023332410223000
............................................................................................................................TATTGCACTTGAGACGGCCGAG.................................................................22175.0075005000811171021300000
...................................................................................................................................CTTGAGACGGCCGAA.................................................................15171.0071000000202166000000
..................................................................................TGGTTCGTCACAAGGGCAATTCAAA........................................................................................................25171.00710005000327332001000
............................................................................................................................TATTGCACTTGAGACGGCCT...................................................................20170.00700212000223340033000
................................................................................................................................GCACTTGAGACGGCCGAAAA...............................................................20267.501350000000000135000000
............................................................................................................................TATTGCACTTGAGACGGCCGAATT...............................................................24167.0067000020101410840118000
..................................................................................TGGTTCGTCACAAGGGCAATTCTAA........................................................................................................25161.006100000045162610000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTG.........................................................................................................24161.006100025091151315001000
..............................................................................................................................TTGCACTTGAGACGGCCGAA.................................................................20159.00590005009185220000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTGC........................................................................................................25157.0057000020758129500000
............................................................................................................................TATTGCACTTGAGACGGCCTG..................................................................21154.005400000014241114000000
..............................................................................................................................TTGCACTTGAGACGGCCGA..................................................................19150.005000010051271015000000
..............................................................................................................................TTGCACTTGAGACGGCCGAAA................................................................21146.00460002005316812000000
...............................................................................................................................TGCACTTGAGACGGCCGA..................................................................18146.0046000000134038000000
............................................................................................................................TATTGCACTTGAGACGGCCA...................................................................20141.00410130003211281010000
................................................................................................................................GCACTTGAGACGGCCG...................................................................16141.0041000000000041000000
............................................................................................................................TATTGCACTTGAGACGGCCGAAGA...............................................................24141.0041000000751397000000
...................................................................................GGTTCGTCACAAGGGCAATT............................................................................................................20140.0040000200007410224000
.............................................................................................................................ATTGCACTTGAGACGGCCGAAC................................................................22140.00400001001013483001000
...................................................................................................................................CTTGAGACGGCCGAAA................................................................16337.331120000000024106000000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAG...............................................................24136.0036000000611439210000
.............................................................................................................................ATTGCACTTGAGACGGCCG...................................................................19135.0035021351030260111000
............................................................................................................................TATTGCACTTGAGACGGCCGAGA................................................................23135.0035000000227519000000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAC..............................................................25133.003300010045687110000
...............................................................................................................................TGCACTTGAGACGGCCGAA.................................................................19132.0032000010232222000000
..................................................................................TGGTTCGTCACAAGGGCAT..............................................................................................................19132.0032000000000000032000
.............................................................................................................................ATTGCACTTGAGACGGCC....................................................................18131.0031000020001226000000
...............................................................................................................................TGCACTTGAGACGGCCGAAA................................................................20131.0031000000004324000000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAT..............................................................25130.0030002100321444000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTGCAAA----.................................................................................................28129.00290000001412300000000
..................................................................................TGGTTCGTCACAAGGGCAATTCTGCAA......................................................................................................27125.0025000000109024000000
.................................................................................................................................CACTTGAGACGGCCGA..................................................................16125.002500000045646000000
............................................................................................................................TATTGCACTTGAGAC........................................................................15223.50470000001341326000000
...................................................................................GGTTCGTCACAAGGGCAATTCT..........................................................................................................22123.002300050003850011000
..................................................................................TGGTTCGTCACAAGGGCAATTCC..........................................................................................................23123.0023000000111017201000
.............................................................................................................................ATTGCACTTGAGACGGC.....................................................................17122.0022000000000121000000
..................................................................................TGGTTCGTCACAAGGGCAAA.............................................................................................................20122.0022000000002120215000
..................................................................................TGGTTCGTCACAAGGGCAATAA...........................................................................................................22119.0019000000004220110000
..............................................................................................................................TTGCACTTGAGACGGCCGAAAA...............................................................22118.001800020032722000000
......................................................................................TCGTCACAAGGGCAATTC...........................................................................................................18118.0018000000000018000000
...................................................................................GGTTCGTCACAAGGGCAATTC...........................................................................................................21118.0018000330000020010000
............................................................................................................................TATTGCACTTGAGACGGCGA...................................................................20115.001500000033621000000
.................................................................................................................................CACTTGAGACGGCCGAAA................................................................18115.001500000012309000000
............................................................................................................................TATTGCACTTGAGACGGCCGACAA...............................................................24115.001500000000651210000
...............................................................................................................................TGCACTTGAGACGGCCGAAAA...............................................................21114.0014000000112010000000
droSec2
TT-ATTAT----------------------AAAT-AAT-------------GGG-AATT--------AAGTTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT----TTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAA-AGAATCATCATT-GAGCAAAGTAAT--TAGTTTTTTTTCCTTGCAATAGGCGGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................................TATTGCACTTGAGACGGCCGA..................................................................2116003.00600335153211963204
............................................................................................................................TATTGCACTTGAGACGGCCGAA.................................................................2215112.0051123805200960147
............................................................................................................................TATTGCACTTGAGACGGCCGAAA................................................................2312950.0029501767691006108
............................................................................................................................TATTGCACTTGAGACGGCCGAAAA...............................................................241626.006262532232130
..................................................................................TGGTTCGTCACAAGGGCAATT............................................................................................................211602.006024065112916
..................................................................................TGGTTCGTCACAAGGGCAATTCT..........................................................................................................231470.004702765011430
............................................................................................................................TATTGCACTTGAGACGGCCG...................................................................201466.004661844421919
..................................................................................TGGTTCGTCACAAGGGCAATTC...........................................................................................................221326.003261374812219
............................................................................................................................TATTGCACTTGAGACGGCCGAAT................................................................231292.0029212582814
............................................................................................................................TATTGCACTTGAGACGGCCGAT.................................................................221251.0025198687411
.............................................................................................................................ATTGCACTTGAGACGGCCGAA.................................................................211238.00238228280
.............................................................................................................................ATTGCACTTGAGACGGCCGA..................................................................201195.00195182292
.............................................................................................................................ATTGCACTTGAGACGGCCGAAA................................................................221140.00140128183
..................................................................................TGGTTCGTCACAAGGGCAAT.............................................................................................................201105.001052825502
............................................................................................................................TATTGCACTTGAGACGGCCGATA................................................................23175.00751334226
............................................................................................................................TATTGCACTTGAGACGGCCGAAC................................................................23159.005944492
..................................................................................TGGTTCGTCACAAGGGCAATTCTGCA.......................................................................................................26144.004422985
............................................................................................................................TATTGCACTTGAGACGGCCGAAG................................................................23144.0044262160
............................................................................................................................TATTGCACTTGAGACGGCCGT..................................................................21137.0037414163
............................................................................................................................TATTGCACTTGAGACGGCCGG..................................................................21131.003128030
............................................................................................................................TATTGCACTTGAGACGGCCGATAA...............................................................24130.003044220
............................................................................................................................TATTGCACTTGAGACGGCCGAC.................................................................22130.003019290
.............................................................................................................................ATTGCACTTGAGACGGCCGAAT................................................................22129.002921431
..................................................................................TGGTTCGTCACAAGGGCAATTCA..........................................................................................................23124.0024101112
..................................................................................TGGTTCGTCACAAGGGCAA..............................................................................................................19123.002331091
............................................................................................................................TATTGCACTTGAGACGGCC....................................................................19123.002363113
..................................................................................TGGTTCGTCACAAGGGCAATTCTA.........................................................................................................24122.002220110
..............................................................................................................................TTGCACTTGAGACGGCCGA..................................................................19122.002214080
...................................................................................GGTTCGTCACAAGGGCAATTCT..........................................................................................................22121.002121000
............................................................................................................................TATTGCACTTGAGACGGC.....................................................................18121.002110164
.............................................................................................................................ATTGCACTTGAGACGGCCGAAAA...............................................................23120.002018200
...................................................................................GGTTCGTCACAAGGGCAATT............................................................................................................20120.002020000
..................................................................................TGGTTCGTCACAAGGGCAATTT...........................................................................................................22118.001801440
..................................................................................TGGTTCGTCACAAGGGCAATTA...........................................................................................................22113.00137330
............................................................................................................................TATTGCACTTGAGACGGCCGTT.................................................................22113.00132452
.............................................................................................................................ATTGCACTTGAGACGGCCG...................................................................19113.001312010
............................................................................................................................TATTGCACTTGAGACGGCCGAG.................................................................22112.00124251
..................................................................................TGGTTCGTCACAAGGGCAATTAAA.........................................................................................................24112.00126141
............................................................................................................................TATTGCACTTGAGACGGCCGAATT...............................................................24112.00122901
..............................................................................................................................TTGCACTTGAGACGGCCGAA.................................................................20111.00119020
............................................................................................................................TATTGCACTTGAGACGGCCGACA................................................................23111.00114061
..................................................................................TGGTTCGTCACAAGGGCAATTCTG.........................................................................................................24110.00105230
..................................................................................TGGTTCGTCACAAGGGCAATTCTGC........................................................................................................2519.0095040
..............................................................................................................................TTGCACTTGAGACGGCCGAAA................................................................2118.0085030
...........................................................................................................................GTATTGCACTTGAGACGGCCGAA.................................................................2318.0088000
..................................................................................TGGTTCGTCACAAGGGCAATTCC..........................................................................................................2318.0084130
..................................................................................TGGTTCGTCACAAGGGCAATA............................................................................................................2116.0063201
............................................................................................................................TATTGCACTTGAGACGGCCGAACA...............................................................2416.0063120
............................................................................................................................TATTGCACTTGAGACGGCCGAATTT..............................................................2516.0061500
............................................................................................................................TATTGCACTTGAGACGGCCGAATA...............................................................2416.0063300
...........................................................................................................................GTATTGCACTTGAGACGGCCGA..................................................................2216.0066000
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAT..............................................................2516.0061230
............................................................................................................................TATTGCACTTGAGACGGCCGAAAG...............................................................2415.0053020
............................................................................................................................TATTGCACTTGAGACGGCCGAAAC...............................................................2415.0054001
............................................................................................................................TATTGCACTTGAGACGGCCGC..................................................................2114.0040130
..................................................................................TGGTTCGTCACAAGGGCAATTCTGCAA......................................................................................................2714.0043010
..................................................................................TGGTTCGTCACAAGGGCA...............................................................................................................1814.0041120
..................................................................................TGGTTCGTCACAAGGGCAATTAA..........................................................................................................2314.0040040
.............................................................................................................................ATTGCACTTGAGACGGCCGAAC................................................................2214.0044000
..............................................................................................................................TTGCACTTGAGACGGCCG...................................................................1814.0041030
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAC..............................................................2513.0032010
............................................................................................................................TATTGCACTTGAGACGGCCGATC................................................................2313.0032100
....................................................................................GTTCGTCACAAGGGCAATT............................................................................................................1913.0033000
..............................................................................................................................TTGCACTTGAGACGGCCGAAT................................................................2113.0031020
...................................................................................GGTTCGTCACAAGGGCAATTCTA.........................................................................................................2313.0033000
..................................................................................TGGTTCGTCACAAGGGCAATTCCA.........................................................................................................2413.0033000
...................................................................................GGTTCGTCACAAGGGCAATTC...........................................................................................................2113.0033000
............................................................................................................................TATTGCACTTGAGACGGCCGAATATA.............................................................2613.0030300
...........................................................................................................................GTATTGCACTTGAGACGGCCGAAA................................................................2413.0033000
.............................................................................................................................ATTGCACTTGAGACGGCC....................................................................1812.0022000
....................................................................................GTTCGTCACAAGGGCAATTCT..........................................................................................................2112.0022000
............................................................................................................................TATTGCACTTGAGACGGCCGATG................................................................2312.0020200
............................................................................................................................TATTGCACTTGAGACGGCCGAATTA..............................................................2512.0021100
..................................................................................TGGTTCGTCACAAGGGCAATTCAAA........................................................................................................2512.0020020
............................................................................................................................TATTGCACTTGAGACGGCCGAAAAG..............................................................2512.0021010
..................................................................................TGGTTCGTCACAAGGGCAATG............................................................................................................2112.0022000
.................................................................................TTGGTTCGTCACAAGGGCAATT............................................................................................................2212.0022000
.............................................................................................................................ATTGCACTTGAGACGGCCGAAG................................................................2212.0022000
................................................................................................................................GCACTTGAGACGGCCGAA.................................................................1812.0022000
............................................................................................................................TATTGCACTTGAGACGGCCGAAACT..............................................................2512.0022000
............................................................................................................................TATTGCACTTGAGACGGCCGGT.................................................................2212.0022000
..................................................................................TGGTTCGTCACAAGGGCAAAA............................................................................................................2112.0020200
..................................................................................TGGTTCGTCACAAGGGCAATTCAA.........................................................................................................2412.0022000
..................................................................................TGGTTCGTCACAAGGGCAATTCTT.........................................................................................................2412.0022000
............................................................................................................................TATTGCACTTGAGACGGCCGACAA...............................................................2412.0020020
..............................................................................................................................TTGCACTTGAGACGGCCGAAAA...............................................................2212.0022000
............................................................................................................................TATTGCACTTGAGACGGCCGTTA................................................................2312.0020200
............................................................................................................................TATTGCACTTGAGACGGCCGTTC................................................................2312.0021100
.............................................................................................................................ATTGCACTTGAGACGGCCGATA................................................................2212.0020200
.............................................................................................................................ATTGCACTTGAGACGGCCGAG.................................................................2112.0022000
droYak3
AA-TTAC------CATATTTATATTATTATAAAT-AAA-------------GTT-A--CAAATT---GCGTTTGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTA---TTAAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CGAATCATTTAAA---CAA----CGC---------------------ATTAAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................TATTGCACTTGAGACGGCCGGA.................................................................22140588.004058829141162379517564177410112360
............................................................................................................................TATTGCACTTGAGACGGCCGGAA................................................................23116980.00169802332113043554415370013
............................................................................................................................TATTGCACTTGAGACGGCCGG..................................................................21113682.0013682248887759860112012110020
............................................................................................................................TATTGCACTTGAGACGGCCGGAT................................................................2318548.0085481361525664417746560000
............................................................................................................................TATTGCACTTGAGACGGCCGGAAA...............................................................2417817.0078171193255001845616000173
............................................................................................................................TATTGCACTTGAGACGGCCG...................................................................2011902.001902467399518343290047
............................................................................................................................TATTGCACTTGAGACGGCCGGAC................................................................2311824.001824441381621140220003
............................................................................................................................TATTGCACTTGAGACGGCCGGT.................................................................2211366.00136603468738617520010
.............................................................................................................................ATTGCACTTGAGACGGCCGGA.................................................................2111237.0012370103019440020007
............................................................................................................................TATTGCACTTGAGACGGCCGGATT...............................................................241563.00563159438925101200027
............................................................................................................................TATTGCACTTGAGACGGCCGGC.................................................................221401.00401111361191350000
............................................................................................................................TATTGCACTTGAGACGGCCGGATA...............................................................241379.00379094265110000018
.............................................................................................................................ATTGCACTTGAGACGGCCGGAA................................................................221364.00364024012310000000
.............................................................................................................................ATTGCACTTGAGACGGCCGG..................................................................201351.0035103183100010010
............................................................................................................................TATTGCACTTGAGACGGCC....................................................................191321.0032101629380110020
............................................................................................................................TATTGCACTTGAGACGGCCGGAAC...............................................................241282.0028201326630000000
............................................................................................................................TATTGCACTTGAGACGGCCGGAG................................................................231218.0021845814670030000
.............................................................................................................................ATTGCACTTGAGACGGCCGGAAA...............................................................231195.0019501623200010000
.............................................................................................................................ATTGCACTTGAGACGGCCGGAT................................................................221193.0019301236720010000
............................................................................................................................TATTGCACTTGAGACGGC.....................................................................181132.001320312511010010
............................................................................................................................TATTGCACTTGAGACGGCCGGTA................................................................231124.001240358320040000
............................................................................................................................TATTGCACTTGAGACGGCCGGAAAT..............................................................251111.001110188530000005
............................................................................................................................TATTGCACTTGAGACGGCCGGG.................................................................221103.0010323827300330000
............................................................................................................................TATTGCACTTGAGACGGCCGGATC...............................................................241103.00103159520000000
............................................................................................................................TATTGCACTTGAGACGGCCGA..................................................................21193.00930127820010000
..............................................................................................................................TTGCACTTGAGACGGCCGGA.................................................................20189.00890522800000009
............................................................................................................................TATTGCACTTGAGACGGCCGGAAG...............................................................24184.00840126820000002
..................................................................................CGGTTCGTCCCAGGAGCAATTCT..........................................................................................................23181.0081078100020000
............................................................................................................................TATTGCACTTGAGACGGCCGT..................................................................21177.007701539600170000
............................................................................................................................TATTGCACTTGAGACGGCCGGCA................................................................23171.00710433320200000
............................................................................................................................TATTGCACTTGAGACGGCCGGATAT..............................................................25169.00690233800010007
............................................................................................................................TATTGCACTTGAGACGGCCGGACA...............................................................24168.0068184561010006
............................................................................................................................TATTGCACTTGAGACGGCCGGTAA...............................................................24159.00590203720000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTT..............................................................25159.0059854020030001
............................................................................................................................TATTGCACTTGAGACGGCCGC..................................................................21153.0053015010010000
............................................................................................................................TATTGCACTTGAGACGGCCGGAAAC..............................................................25151.0051024700000002
.............................................................................................................................ATTGCACTTGAGACGGCCG...................................................................19137.0037032500000000
............................................................................................................................TATTGCACTTGAGACGGCCGGCAA...............................................................24133.00330218130000000
.............................................................................................................................ATTGCACTTGAGACGGCCGGT.................................................................21133.0033026700000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATG...............................................................24131.0031661540000000
..............................................................................................................................TTGCACTTGAGACGGCCGG..................................................................19130.0030024600000000
.............................................................................................................................ATTGCACTTGAGACGGCCGGAC................................................................22128.00281101700000000
..............................................................................................................................TTGCACTTGAGACGGCCGGAA................................................................21128.00280141400000000
............................................................................................................................TATTGCACTTGAGACGGCCGGGA................................................................23128.00280134110000000
............................................................................................................................TATTGCACTTGAGACGGCG....................................................................19126.0026002600000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATAC..............................................................25123.0023051610100000
............................................................................................................................TATTGCACTTGAGACGGCCGGTC................................................................23122.0022021900010000
............................................................................................................................TATTGCACTTGAGACGGCCGGACC...............................................................24121.0021102000000000
...........................................................................................................................GTATTGCACTTGAGACGGCCGGA.................................................................23118.0018016200000000
............................................................................................................................TATTGCACTTGAGACGGCCC...................................................................20118.0018111510000000
.............................................................................................................................ATTGCACTTGAGACGGCCGGATA...............................................................23117.0017013400000000
...............................................................................................................................TGCACTTGAGACGGCCGGA.................................................................19116.0016010600000000
..............................................................................................................................TTGCACTTGAGACGGCCGGAAA...............................................................22116.0016012400000000
..................................................................................CGGTTCGTCCCAGGAGCAATTC...........................................................................................................22116.001608530000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATCT..............................................................25114.0014001310000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTAA.............................................................26114.001408600000000
............................................................................................................................TATTGCACTTGAGACGGCCGGCC................................................................23112.0012001100100000
............................................................................................................................TATTGCACTTGAGACGGCT....................................................................19112.0012001200000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTTTA............................................................27112.0012000000000012
..............................................................................................................................TTGCACTTGAGACGGCCGGAT................................................................21112.001209200010000
............................................................................................................................TATTGCACTTGAGACGGCCT...................................................................20111.001112620000000
............................................................................................................................TATTGCACTTGAGACGGCCGGTAC...............................................................24110.001001710010000
............................................................................................................................TATTGCACTTGAGACGGCCGGAACT..............................................................25110.0010001000000000
............................................................................................................................TATTGCACTTGAGACGGCCGGAAAG..............................................................25110.001003610000000
.............................................................................................................................ATTGCACTTGAGACGGCCGGATT...............................................................23110.001008100010000
...........................................................................................................................GTATTGCACTTGAGACGGCCGGAA................................................................2419.00909000000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTAAA............................................................2719.00923300010000
.............................................................................................................................ATTGCACTTGAGACGGCCGGAG................................................................2219.00908100000000
droEre2
AA-TTAC------CATATTTATATA---ATTGAT-TAT-------------GTG-AATT--------AAGTTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTT-TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAA-CAAAACATTTTAA------------------------------------ATAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................TATTGCACTTGAGACGGCCGGA.................................................................2226715.50134319540694162476641212149
............................................................................................................................TATTGCACTTGAGACGGCCGG..................................................................2121811.5036232962208981294672
............................................................................................................................TATTGCACTTGAGACGGCCGGAA................................................................2321563.0031262344377069336297
............................................................................................................................TATTGCACTTGAGACGGCCGGAAA...............................................................242992.00198417991300294121
............................................................................................................................TATTGCACTTGAGACGGCCGGAT................................................................232729.5014596457551511818583
............................................................................................................................TATTGCACTTGAGACGGCCG...................................................................202418.0083650445816216452
.............................................................................................................................ATTGCACTTGAGACGGCCGGA.................................................................212346.0069265740013216
............................................................................................................................TATTGCACTTGAGACGGCCGGT.................................................................222163.5032714014761183210
.............................................................................................................................ATTGCACTTGAGACGGCCGG..................................................................20290.00180168200820
............................................................................................................................TATTGCACTTGAGACGGCCGGAC................................................................23287.5017553150151100
.............................................................................................................................ATTGCACTTGAGACGGCCGGAA................................................................22285.50171157701105
.............................................................................................................................ATTGCACTTGAGACGGCCGGAAA...............................................................23254.00108107000100
............................................................................................................................TATTGCACTTGAGACGGCCGT..................................................................21242.00842603142120
.............................................................................................................................ATTGCACTTGAGACGGCCGGAT................................................................22238.0076551101207
............................................................................................................................TATTGCACTTGAGACGGCCGGATT...............................................................24235.50711430119232
............................................................................................................................TATTGCACTTGAGACGGCC....................................................................19230.00601814011980
............................................................................................................................TATTGCACTTGAGACGGCCGGATA...............................................................24223.504733101336
............................................................................................................................TATTGCACTTGAGACGGCCGA..................................................................21222.5045251703000
............................................................................................................................TATTGCACTTGAGACGGCCGGAG................................................................23221.504336201004
............................................................................................................................TATTGCACTTGAGACGGCCGGTA................................................................23219.0038142101038
..............................................................................................................................TTGCACTTGAGACGGCCGGA.................................................................20215.003029000100
............................................................................................................................TATTGCACTTGAGACGGCCGGC.................................................................22213.002671012105
............................................................................................................................TATTGCACTTGAGACGGCCT...................................................................20213.002610102040
............................................................................................................................TATTGCACTTGAGACGGCCGTT.................................................................22212.502520101930
.............................................................................................................................ATTGCACTTGAGACGGCCG...................................................................19211.502321000200
............................................................................................................................TATTGCACTTGAGACGGCCGGG.................................................................2229.50199004105
............................................................................................................................TATTGCACTTGAGACGGCCGGAAC...............................................................2429.001841201100
............................................................................................................................TATTGCACTTGAGACGGC.....................................................................1827.50157600020
............................................................................................................................TATTGCACTTGAGACGGCCGGTAA...............................................................2427.501510101300
............................................................................................................................TATTGCACTTGAGACGGCCGGAAG...............................................................2426.00129300000
..............................................................................................................................TTGCACTTGAGACGGCCGGAA................................................................2125.501110100000
..................................................................................CGGTTCGTACCAGGAGCAATTCT..........................................................................................................2325.50115000420
............................................................................................................................TATTGCACTTGAGACGGCCGGAAAT..............................................................2525.50117101002
..............................................................................................................................TTGCACTTGAGACGGCCGGAAA...............................................................2224.5099000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTT..............................................................2524.5092110500
.............................................................................................................................ATTGCACTTGAGACGGCCGGT.................................................................2124.0085000300
............................................................................................................................TATTGCACTTGAGACGGCCGGAAAC..............................................................2524.0086200000
..............................................................................................................................TTGCACTTGAGACGGCCGGAT................................................................2124.0083000005
............................................................................................................................TATTGCACTTGAGACGGCCA...................................................................2023.5072001400
...........................................................................................................................GTATTGCACTTGAGACGGCCGGA.................................................................2323.5073000004
.............................................................................................................................ATTGCACTTGAGACGGCCGGG.................................................................2123.5077000000
.............................................................................................................................ATTGCACTTGAGACGGCCGGAC................................................................2223.0065000100
............................................................................................................................TATTGCACTTGAGACGGCCGC..................................................................2123.0065000010
..................................................................................CGGTTCGTACCAGGAGCAATTC...........................................................................................................2223.0066000000
...........................................................................................................................GTATTGCACTTGAGACGGCCGG..................................................................2223.0066000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTTT.............................................................2622.5050000302
............................................................................................................................TATTGCACTTGAGACGGCCGGCAA...............................................................2422.5051103000
............................................................................................................................TATTGCACTTGAGACGGCCGGCA................................................................2322.5051103000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTCAC............................................................2722.5050000005
..............................................................................................................................TTGCACTTGAGACGGCCGG..................................................................1922.5055000000
...............................................................................................................................TGCACTTGAGACGGCCGGA.................................................................1922.0042100010
............................................................................................................................TATTGCACTTGAGACGGCCGGTG................................................................2322.0040000130
...........................................................................................................................GTATTGCACTTGAGACGGCCGGAA................................................................2422.0044000000
.............................................................................................................................ATTGCACTTGAGACGGCCGGATT...............................................................2322.0043000100
............................................................................................................................TATTGCACTTGAGACGGCCGGATAT..............................................................2522.0043000100
...................................................................................................................................CTTGAGACGGCCGGA.................................................................1521.5030000003
............................................................................................................................TATTGCACTTGAGACGGCCGGGA................................................................2321.5030003000
............................................................................................................................TATTGCACTTGAGACGGCCGGAACT..............................................................2521.5032100000
............................................................................................................................TATTGCACTTGAGACGGCCGGATTC..............................................................2521.5030000003
............................................................................................................................TATTGCACTTGAGACGGCCC...................................................................2021.5033000000
............................................................................................................................TATTGCACTTGAGACGGCCGGATC...............................................................2421.5030001002
............................................................................................................................TATTGCACTTGAGACGGT.....................................................................1821.5030000120
dp5
GA-ATTAT----------------------TGAT-CGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
AA-ATTAT----------------------TGAT-CGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droVir3
TG-AATTATAGTGCAATTTTCTAT-------------T-------------GTC-AAAA--------GTATCGCTAGTTTTTCGGCTGTGGTCAGTGTCAATTCTTTTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGGAAAAATTGAGATTC----CATTTAA-AACACAAGATTGCGC----------------ACAATTCAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................TATTGCACTTTTCACGGCCGGA.................................................................221991228.0099122814472188575327732583343644799493592204662625920914029292332011234135481151120992253615501301015963992142439501704713406145401921866859521250502627403119382137461013910172417962533322319427199630970008931777877437441253726204634176079641676793894431115129
............................................................................................................................TATTGCACTTTTCACGGCCGGAA................................................................231268541.002685418040053294123616985619208221008785134116801010782613183951724842787370571668128963017991416533111749116231960013745335429312157627401913520000311238975013151703240082298618249220193125131155152159511147497551489120859
............................................................................................................................TATTGCACTTTTCACGGCCGGAAA...............................................................241196788.0019678840329119497492648922758136174412685245201000776021650717245521026852961501238227213764701068512725298871245158483471115672473111300014156612136214522681294910154541024222310113311113349943022278550746458
............................................................................................................................TATTGCACTTTTCACGGCCGG..................................................................211174200.0017420037076433184114131566732148437021415163220101001958102447285819003648281727251700860242736725633912394750804501239864010147114111479133018105900114561617601658602370617639893453935629623548142810644753285971433115139
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAA..............................................................25158603.005860302104925815828017223966964459300000006004082210141935221320131032741461332513559110293193190720240110010110000000261313897764315123809906767445449449064655039541244
............................................................................................................................TATTGCACTTTTCACGGCCGGAT................................................................23143978.004397882162659816623840150350281570000031740031347646872366533423915849310415671989210061071323577161066115511713754201313115110119019854285181349448654842940745335736541863200532834546
............................................................................................................................TATTGCACTTTTCACGGCCGGAC................................................................23133768.00337687711071863862001012323000000610056815112186107592797147191031192101559022134410003120002000120020262451185199280956048424026230637723822238235643164942
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAA.............................................................26121947.00219470058572292270307447786000010030090102156519104774008149951452135144011027656121200000100010000004010058130513671031469352212223021359258213489607
............................................................................................................................TATTGCACTTTTCACGGCCG...................................................................20119757.00197575701894207222140129141419727165370000006820050145230061838888983762414655592746428301424636716354020413124141311002398247051121144674162174126138112152144312119218536326
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAA............................................................27110320.00103200042025701004021124660000010002249626911531990102767279863424514823070002000000000000000010000433193417302102110000789273128173
............................................................................................................................TATTGCACTTTTCACGGCCGGC.................................................................2215853.0058531015925802723601014933900010123400620196272984112234019171314394712113031020200100000340103387573671324312415202360723316539
............................................................................................................................TATTGCACTTTTCACGGCCGGAAC...............................................................2415722.005722101936801200010501000000300271316161103162901715452884300000001000000000001600042861737633322017271925521423376734829
..................................................................................CGGCTGTGGTCAGTGTCAATTCT..........................................................................................................2315569.0055694026035554132502200000012003295492551964581222286110640200010000000000000000060283031242684493448958761491629781936
............................................................................................................................TATTGCACTTTTCACGGCCGGAAT...............................................................2415052.0050520046109202501001454230000001900276356999651282082161111611732581815970111021000000000001270102635581535356115203291283242331499
............................................................................................................................TATTGCACTTTTCACGGCCGGT.................................................................2215050.005050001812635925402440148622010001125001051319714811617216973226127421701502832031434611002401100001200025907219493513142153201851891658397190183
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAA...........................................................2814285.00428500258571400002883000000000616911054069200015202291891003256133001001000000000000001000251113238156470000004047404975
............................................................................................................................TATTGCACTTTTCACGGCCGGAG................................................................2312321.0023213073519070103658700000070012232233181216914531465668711830300000010000000000130401718288251136221079138107104143238229
.............................................................................................................................ATTGCACTTTTCACGGCCGGA.................................................................2111935.0019350013495750500005980000001001019926318727200271921269200000000000000100004011302930181930001727224146
............................................................................................................................TATTGCACTTTTCACGGCCGGATT...............................................................2411747.0017475017404100000113400000010009201531211881424366132019351050024215024300110012130101491821941443925222629191208391130179
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAT..............................................................2511732.00173200536400303001510115000001100665289144141101541781303129476010000000202001000003400024128841310200213018183143
............................................................................................................................TATTGCACTTTTCACGGC.....................................................................1811473.00147312064210101010110000004002102942105708343312521313071201110022000071491698817720282149100729724156652
............................................................................................................................TATTGCACTTTTCACGGCCGGG.................................................................2211335.0013352012012173901014131000000300191021394027222136813245010100000001001000026020651011489333292414163944111102128146
............................................................................................................................TATTGCACTTTTCACGGCCGGAAG...............................................................2411146.001146102241102020010327000000000416132120322335031364234801243120233220010001800019101107351332898192133496595100
............................................................................................................................TATTGCACTTTTCACGGCCGGACT...............................................................2411066.0010666134100000002000000020022010021510324640220100202001000000030000016219395111132413686569148157
............................................................................................................................TATTGCACTTTTCACGGCC....................................................................191943.009431601085471201000100000005006221621171525829280222535178200301100201011000010002181334273749281226382387412022
.................................................................................TCGGCTGTGGTCAGTGTCAATTCT..........................................................................................................241901.0090100100000000040000000000000000000000100000010000000000000000000010125140367778244270752630218564
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAC..............................................................251655.0065510111620300003111000000000613411420001301312311126000000000000000000008000217058450400175435415184
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAA...............................................................231594.005940021019100000186615000000200310517140011350173141353000000000000000000005000104157110010040344
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAAA..........................................................291566.005660058200000000400000000000632020000600523617000000000000000000010000855410169180000001317111926
.............................................................................................................................ATTGCACTTTTCACGGCCGGAA................................................................221517.005170024227011000041540000000001551910411226024101620300000000000000000000000031913100000001048108
.............................................................................................................................ATTGCACTTTTCACGGCCGG..................................................................201516.005160042510010000013000000010010342210240768700000000000000000000010000005200000030395
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAG..............................................................251417.00417005910100005251000000000144112000014099161770311000212030000000040002837251024301012191838102023
............................................................................................................................TATTGCACTTTTCACGGCCGGTT................................................................231415.0041500112412101000700000002300844613745187120899161361000000000000000000001000031712620000131275
............................................................................................................................TATTGCACTTTTCACGGCCGA..................................................................211384.003840020620101103100000009004534412095046101190000000000000000000000101492532900000028692614
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAT.............................................................261374.0037400121000100001184000000000111111880002300252171331100000000000000000000100046161610040141045104
............................................................................................................................TATTGCACTTTTCACGGCCGGACC...............................................................241345.00345230100000000017000000020060110400130211111000000100110000000010001032241138387111626304352
................................................................................................................................GCACTTTTCACGGCCGGA.................................................................181341.003410025240402000230000002001265157400281136475100000000000000000000000771319414210364945931
............................................................................................................................TATTGCACTTTTCACGGCCGGATG...............................................................241315.0031510421110100101000000100663583224111376330000000000000000000030000035232091965841813141338
............................................................................................................................TATTGCACTTTTCACGGCCGT..................................................................211315.00315002663400010130000000290027125215201137184614491300000000000000000007080001711600000060332
.................................................................................TCGGCTGTGGTCAGTGTCAATT............................................................................................................221312.00312001000000000100000000000000000000000010000000001000000000000000207071211042545516114339
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAACA............................................................271295.00295000100000000100000000001101100004029681503310000000000000000000000001020000000000001
..............................................................................................................................TTGCACTTTTCACGGCCGGA.................................................................201277.002770083123210000610700000040021161016211291871112100000000000000000000000020123800000172149
............................................................................................................................TATTGCACTTTTCACGGCCGGCT................................................................231276.002761007141120001050000000191024011002000202402490000000000000000000800000433924001000280021
............................................................................................................................TATTGCACTTTTCACGGCCGGATC...............................................................241273.002733811482020000010000000900402201667140241204200000000000000000003042017862010916141724423
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAC.............................................................261270.00270000510400000300000000002213000004065111112000000000000000000002000153931131100001512172835
.................................................................................TCGGCTGTGGTCAGTGTCAAT.............................................................................................................211256.002560010000000012000000000000000000000011000000000000000000000000000552561284284108892935
...........................................................................................................................GTATTGCACTTTTCACGGCCGGA.................................................................231231.0023100216101000011000000000000293300120262100000000000000000000000002114157210200529213238
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAC............................................................271208.0020800030000000041000000000024420000103612450000000000000000000000001030318000000109132134
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAAA..............................................................241200.002000084400201000196000000000121116010010041511410000000000000000000000001541010010011110
............................................................................................................................TATTGCACTTTTCACGGCCGC..................................................................211194.001940031700000000320000001800401010000306151200000000000000000000200000512724010000120343
............................................................................................................................TATTGCACTTTTCACGGCCGGCC................................................................231174.001740000611000001000000060014000001010000001310000000000000000000301000493227000020141000
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAG.............................................................261156.0015600100000000118100000000003011000011071104300000000000000000001100031281032000002551122
..............................................................................................................................TTGCACTTTTCACGGCCGGAA................................................................211155.0015500241400000002750000000000537420001801210211010000000000000000000000000120200000000212
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAT............................................................271149.0014900520010000060000000000052132000012011123210100000000000000000000100051104100000022063
............................................................................................................................TATTGCACTTTTCACGGCCA...................................................................201148.0014800140100000000100000000034482001181761934200000000000000000001000032112710000050162
............................................................................................................................TATTGCACTTTTCACGGCCGGTC................................................................231140.00140100203322000000000000012001242011133512102034000000000000000000010300204330203521131
..................................................................................CGGCTGTGGTCAGTGTCAATTC...........................................................................................................221137.001370060303000000000000000013263100010110000000000000000000000000000421113112120101900112
..............................................................................................................................TTGCACTTTTCACGGCCGGAAA...............................................................221131.00131001150000300124400000000003442001080111216910000000000000000000010001013100000020120
.............................................................................................................................ATTGCACTTTTCACGGCCG...................................................................191125.00125001132000000001000000000000011000210011200000000000000000000000000000000000000000
............................................................................................................................TATTGCACTTTTCACGGCCGGAATT..............................................................251123.0012300111000000004100000050010031340441531041201000000000000000004000106111500001023254
............................................................................................................................TATTGCACTTTTCACGGCCGGATTT..............................................................251120.0012010230000000000000000000040437261111242100000100211010000000000001086611206355475
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAACA...........................................................281119.001190000000000000000000000000010000010613861010000000000000000000000000010000000000000
............................................................................................................................TATTGCACTTTTCACGGCCGGAACT..............................................................251116.001160001000000011000000000000000000000131120000000000000000000110000018211000100012712148
................................................................................................................................GCACTTTTCACGGCCGGAAA...............................................................201102.00102009141200001125000000000420800000205272110000000000000000000000003623100000010242
.................................................................................TCGGCTGTGGTCAGTGTCAATTC...........................................................................................................23197.0097001000000000100000000000000000000000010000000000000000000010000101419591436536089
...............................................................................................................................TGCACTTTTCACGGCCGGA.................................................................19195.009500241301000014000000000054245200032616400000000000000000000000000131300001102023
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAAAA.............................................................25194.009400540001000006000000000011022000060045000000000000000000000000004041000000000012
................................................................................................................................GCACTTTTCACGGCCGGAA................................................................19194.00940040201000000000000000094323200050526420000000000000000000000004234700000080156
............................................................................................................................TATTGCACTTTTCACGGCCGGACG...............................................................24190.00900001000000000000000000000010000100000010000000000000000000000000010113001001710111517
............................................................................................................................TATTGCACTTTTCACGGCCGGATTG..............................................................25188.008800010000000010000000000000110010000100100000000000000000000000000610610512103333046
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAC...........................................................28186.00860011000000003100000000002010000000106010000000000000000000100002015940000005541212
droMoj3
TT-----------------------------------------------------------------------------TTCCGGTTGTGAATTGTGTCAATTCTTTTTA-----TTTTACAAGTATTGCACTTTTCACGGCCGGAAAAAGGAT---------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................TATTGCACTTTTCACGGCCGGA.................................................................22191886.0091886348992255426553886739
............................................................................................................................TATTGCACTTTTCACGGCCGG..................................................................21157354.0057354125651673162842513559
............................................................................................................................TATTGCACTTTTCACGGCCGGAA................................................................23139430.003943085391627182329012211
............................................................................................................................TATTGCACTTTTCACGGCCGGAAA...............................................................24122266.002226610218160331499815550
............................................................................................................................TATTGCACTTTTCACGGCCG...................................................................2018819.0088191948542766086230
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAA..............................................................2513454.00345424801341114634181
.............................................................................................................................ATTGCACTTTTCACGGCCGGA.................................................................2112628.00262820126006100
............................................................................................................................TATTGCACTTTTCACGGCCGGAT................................................................2312313.0023135764821165333
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAA.............................................................2611294.001294113717127760
............................................................................................................................TATTGCACTTTTCACGGCCGGT.................................................................2211192.001192225670485937
.............................................................................................................................ATTGCACTTTTCACGGCCGGAA................................................................2211055.0010554802005730
............................................................................................................................TATTGCACTTTTCACGGCCGGAC................................................................2311043.00104314732008622
............................................................................................................................TATTGCACTTTTCACGGCC....................................................................191888.00888809007972
.............................................................................................................................ATTGCACTTTTCACGGCCGG..................................................................201857.008576340002230
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAA...............................................................231749.007496200001290
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAA............................................................271715.007156732021226
............................................................................................................................TATTGCACTTTTCACGGCCGGC.................................................................221621.006217539005034
............................................................................................................................TATTGCACTTTTCACGGCCGGAAT...............................................................241577.005777827004657
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAA...........................................................281424.0042441500009
............................................................................................................................TATTGCACTTTTCACGGC.....................................................................181393.00393110003811
...........................................................................................................................GTATTGCACTTTTCACGGCCGGA.................................................................231352.003529510002470
............................................................................................................................TATTGCACTTTTCACGGCCGGAG................................................................231342.003429814002255
............................................................................................................................TATTGCACTTTTCACGGCCGC..................................................................211214.0021453002033
..............................................................................................................................TTGCACTTTTCACGGCCGGA.................................................................201200.00200920001071
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAAA..............................................................241195.00195181000131
............................................................................................................................TATTGCACTTTTCACGGCCGGAAG...............................................................241178.00178439001233
...........................................................................................................................GTATTGCACTTTTCACGGCCGGAA................................................................241169.00169234001411
...........................................................................................................................GTATTGCACTTTTCACGGCCGG..................................................................221169.00169414001240
............................................................................................................................TATTGCACTTTTCACGGCCGA..................................................................211167.001673410012012
............................................................................................................................TATTGCACTTTTCACGGCCGGAAC...............................................................241166.00166279001300
..............................................................................................................................TTGCACTTTTCACGGCCGGAA................................................................211139.00139210001180
............................................................................................................................TATTGCACTTTTCACGGCCGGG.................................................................221133.00133392502661
.............................................................................................................................ATTGCACTTTTCACGGCCG...................................................................191119.0011994001240
............................................................................................................................TATTGCACTTTTCACGGCCGT..................................................................211111.00111181007418
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAT..............................................................251101.0010134400612
..............................................................................................................................TTGCACTTTTCACGGCCGG..................................................................19181.008136000450
............................................................................................................................TATTGCACTTTTCACGGCCGGATT...............................................................24181.008125600464
..............................................................................................................................TTGCACTTTTCACGGCCGGAAA...............................................................22179.007942000361
...........................................................................................................................GTATTGCACTTTTCACGGCCGGAAA...............................................................25170.007036100321
............................................................................................................................TATTGCACTTTTCACGGCCC...................................................................20167.00672100640
..................................................................................CGGTTGTGAATTGTGTCAATTCT..........................................................................................................23161.00614700095
.............................................................................................................................ATTGCACTTTTCACGGCCGGAT................................................................22160.00605200080
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAAAA.............................................................25158.00585800000
............................................................................................................................TATTGCACTTTTCACGGCCGGTT................................................................23157.005711211357
...............................................................................................................................TGCACTTTTCACGGCCGGA.................................................................19149.004922000270
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAAAAA............................................................26149.00494800010
............................................................................................................................TATTGCACTTTTCACGGCCA...................................................................20146.004632200111
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAC..............................................................25146.004614200300
............................................................................................................................TATTGCACTTTTCACGGCT....................................................................19144.00440000440
............................................................................................................................TATTGCACTTTTCACGGCG....................................................................19136.00360100350
................................................................................................................................GCACTTTTCACGGCCGGA.................................................................18132.003215100160
............................................................................................................................TATTGCACTTTTCACGGCCGGACT...............................................................24131.00313200260
.............................................................................................................................ATTGCACTTTTCACGGCCGGAAAAAAA...........................................................27130.00303000000
...............................................................................................................................TGCACTTTTCACGGCCGGAA................................................................20130.00303000270
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAG..............................................................25130.003012101142
...........................................................................................................................GTATTGCACTTTTCACGGCCG...................................................................21130.00309000210
................................................................................................................................GCACTTTTCACGGCCGGAAA...............................................................20123.002311000120
..................................................................................................................................ACTTTTCACGGCCGGAAA...............................................................18121.00218000121
............................................................................................................................TATTGCACTTTTCACGGCCGGAAAAT.............................................................26121.002111000100
.............................................................................................................................ATTGCACTTTTCACGGCCGGT.................................................................21120.00201000082
............................................................................................................................TATTGCACTTTTCACGGCCGGCT................................................................23119.00193310102
............................................................................................................................TATTGCACTTTTCACGGCCGGTC................................................................23118.0018800091
...............................................................................................................................TGCACTTTTCACGGCCGGAAA...............................................................21118.00181020060
................................................................................................................................GCACTTTTCACGGCCGGAA................................................................19117.00171000160
.............................................................................................................................ATTGCACTTTTCACGGCCGGAC................................................................22117.00171100060
...............................................................................................................................TGCACTTTTCACGGCCGG..................................................................18117.00176100100
.............................................................................................................................ATTGCACTTTTCACGGCC....................................................................18115.00155000100
droGri2
TA-TTAG------GATATTTATTT-----------TTT-------------GTT-AAGC--------AAATCTTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTTA-----TTTGACAAGCATTGCACTCTTCACGGCCGGATAAATGAGGGT-CTATGT---TAAA---CAAAAT--------------------------TAATASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................CATTGCACTCTTCACGGCCGGA.................................................................22181.00817110
............................................................................................................................CATTGCACTCTTCACGGCCGG..................................................................21129.0029254
............................................................................................................................CATTGCACTCTTCACGGCCGGAA................................................................2317.00752
............................................................................................................................CATTGCACTCTTCACGGCCG...................................................................2017.00752
............................................................................................................................CATTGCACTCTTCACGGCCGGAT................................................................2314.00431
.............................................................................................................................ATTGCACTCTTCACGGCCGGA.................................................................2114.00440
............................................................................................................................CATTGCACTCTTCACGGCCGGT.................................................................2214.00440
.............................................................................................................................ATTGCACTCTTCACGGCCGG..................................................................2013.00330
..................................................................................CGGCTGTGGTTAGTGTCAATTCT..........................................................................................................2312.00220
..............................................................................................................................TTGCACTCTTCACGGCCGGA.................................................................2011.00110
............................................................................................................................CATTGCACTCTTCACGGCCGGATTC..............................................................2511.00101
.............................................................................................................................ATTGCACTCTTCACGGCCGGAT................................................................2211.00110

Generated: 10/20/2015 at 07:37 PM