ID:

dan-mir-263b

 Coordinate:

scaffold_13337:11320743-11320831 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.5 -28.9 -28.9

Flybase annnotation

utr3 [utr3_minus_5839]; pre_miRNA [Dana\mir-263b-RM]; miRNA [Dana\miR-263b-RA]

No Repeatable elements found

Sense Strand Reads

CGATCTATAAATGATTTTTGTGATTTTTGAATCAAATATTCTGGACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTATTATTCTGTGGTTCTGCGGGTGCCAAAATTGAAATAATGGCCTAAAACCTCAAAAAAGGATATTTATTATAAAATAATTTATTTTAAACATAA

*************************************************..(((((.(((.(((.((((((((...(((((.(((((.((((...))))..))))))))))...)))))))).))).)))..)))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total V106

head

 V105

male body		 V055

head

 M044

female body

 V039

embryo

 M058

embryo
................................................................CTTGGCACTGGGAGAATTCAC........................................................................................................ 21 0 1 17321.00 17321 15891 446 886 72 18 8
................................................................CTTGGCACTGGGAGAATTCACAG...................................................................................................... 23 0 1 15088.00 15088 13520 635 625 112 97 99
................................................................CTTGGCACTGGGAGAATTCA......................................................................................................... 20 0 1 12018.00 12018 8769 1904 1259 79 7 0
................................................................CTTGGCACTGGGAGAATTCACA....................................................................................................... 22 0 1 10883.00 10883 8677 1233 833 84 43 13
................................................................CTTGGCACTGGGAGAATTC.......................................................................................................... 19 0 1 6895.00 6895 6005 417 457 16 0 0
................................................................CTTGGCACTGGGAGAATTCACAT...................................................................................................... 23 1 1 238.00 238 231 3 1 0 3 0
................................................................CTTGTCACTGGGAGAATTCAC........................................................................................................ 21 1 1 156.00 156 152 2 0 1 1 0
................................................................CTGGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 133.00 133 125 0 7 0 1 0
................................................................CTTGTCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 129.00 129 127 2 0 0 0 0
................................................................CTTGTCACTGGGAGAATTCA......................................................................................................... 20 1 1 126.00 126 105 19 1 1 0 0
................................................................ATTGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 118.00 118 109 0 9 0 0 0
................................................................CTTGGCACTGGGAGAATTCT......................................................................................................... 20 1 1 113.00 113 88 8 16 1 0 0
................................................................CTTGGCACTGTGAGAATTCAC........................................................................................................ 21 1 1 113.00 113 110 0 3 0 0 0
................................................................CTTGTCACTGGGAGAATTCACA....................................................................................................... 22 1 1 111.00 111 100 11 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCAA........................................................................................................ 21 1 1 110.00 110 94 7 8 1 0 0
................................................................CTTGGAACTGGGAGAATTCAC........................................................................................................ 21 1 1 110.00 110 103 3 4 0 0 0
................................................................CTTGGCACTGGTAGAATTCAC........................................................................................................ 21 1 1 109.00 109 104 3 2 0 0 0
................................................................CTTGGCACTGGGAGAATTCACAGT..................................................................................................... 24 0 1 103.00 103 93 4 5 0 1 0
................................................................CTTGGCACTTGGAGAATTCAC........................................................................................................ 21 1 1 101.00 101 100 0 1 0 0 0
.................................................................TTGGCACTGGGAGAATTCACAG...................................................................................................... 22 0 1 101.00 101 83 1 5 11 1 0
................................................................CTTGGCACTGGGAGAATTT.......................................................................................................... 19 1 1 98.00 98 69 11 17 1 0 0
.................................................................TTGGCACTGGGAGAATTCAC........................................................................................................ 20 0 1 91.00 91 76 1 4 10 0 0
................................................................CTGGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 89.00 89 87 0 2 0 0 0
................................................................CTTGGCACTGGGAGAATT........................................................................................................... 18 0 1 89.00 89 47 3 38 1 0 0
................................................................CTGGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 80.00 80 70 0 10 0 0 0
................................................................CTTGTCACTGGGAGAATTC.......................................................................................................... 19 1 1 78.00 78 73 4 1 0 0 0
................................................................CTTGGCACTTGGAGAATTCACAG...................................................................................................... 23 1 1 77.00 77 75 1 0 0 1 0
................................................................CTTGGCACTGGGAGAATTCAT........................................................................................................ 21 1 1 74.00 74 66 6 1 1 0 0
................................................................CTTGGAACTGGGAGAATTCACAG...................................................................................................... 23 1 1 71.00 71 67 2 1 1 0 0
................................................................ATTGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 70.00 70 61 0 9 0 0 0
................................................................CTTGGAACTGGGAGAATTCACA....................................................................................................... 22 1 1 70.00 70 62 3 5 0 0 0
................................................................CTTGGCACTGGGAGAATTCAAAG...................................................................................................... 23 1 1 67.00 67 62 4 1 0 0 0
................................................................CTTGGCACTGGTAGAATTCA......................................................................................................... 20 1 1 66.00 66 56 7 3 0 0 0
................................................................CTTGGCACTGTGAGAATTCACAG...................................................................................................... 23 1 1 66.00 66 62 2 1 0 1 0
................................................................CTTGGCACTGGTAGAATTCACAG...................................................................................................... 23 1 1 66.00 66 63 2 1 0 0 0
................................................................CTTGGCACTGGGATAATTCAC........................................................................................................ 21 1 1 66.00 66 61 2 3 0 0 0
................................................................CTGGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 65.00 65 61 0 4 0 0 0
................................................................ATTGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 62.00 62 44 4 14 0 0 0
................................................................CTTGGAACTGGGAGAATTCA......................................................................................................... 20 1 1 60.00 60 48 7 5 0 0 0
................................................................CTTGGCACTTGGAGAATTCA......................................................................................................... 20 1 1 60.00 60 56 4 0 0 0 0
................................................................CTTGGCACTTGGAGAATTCACA....................................................................................................... 22 1 1 59.00 59 54 0 4 0 1 0
.................................................................TTGGCACTGGGAGAATTCA......................................................................................................... 19 0 1 59.00 59 31 9 9 10 0 0
................................................................CTTGGCACTGGGAGAATTCATAG...................................................................................................... 23 1 1 57.00 57 48 7 1 0 0 1
.................................................................TTGGCACTGGGAGAATTC.......................................................................................................... 18 0 1 57.00 57 47 2 7 1 0 0
................................................................CTTGGCACTGGGAGAATTCACT....................................................................................................... 22 1 1 54.00 54 40 3 10 0 1 0
................................................................CTTGGCACTGGTAGAATTCACA....................................................................................................... 22 1 1 53.00 53 48 3 1 1 0 0
.................................................................TTGGCACTGGGAGAATTCACA....................................................................................................... 21 0 1 53.00 53 40 5 1 7 0 0
................................................................CTTGGCACTGTGAGAATTCACA....................................................................................................... 22 1 1 52.00 52 51 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCAG........................................................................................................ 21 1 1 52.00 52 47 5 0 0 0 0
................................................................CTTGGCACTTGGAGAATTC.......................................................................................................... 19 1 1 51.00 51 50 0 1 0 0 0
................................................................ATTGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 50.00 50 43 2 5 0 0 0
................................................................CTGGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 50.00 50 50 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTAAC........................................................................................................ 21 1 1 48.00 48 44 0 4 0 0 0
................................................................CTTGGCACTGGGAGAATTCAGA....................................................................................................... 22 1 1 47.00 47 28 18 1 0 0 0
................................................................CTTGGCACTGGGATAATTCA......................................................................................................... 20 1 1 47.00 47 41 5 1 0 0 0
................................................................CTTGGCACTGGGAGAATTCAGAG...................................................................................................... 23 1 1 46.00 46 42 4 0 0 0 0
................................................................CTTGGCACTGGGATAATTCACAG...................................................................................................... 23 1 1 45.00 45 44 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCACAGA..................................................................................................... 24 1 1 44.00 44 40 1 2 1 0 0
................................................................CTTGGCACTGTGAGAATTC.......................................................................................................... 19 1 1 44.00 44 41 3 0 0 0 0
................................................................CTTGGCACTGGTAGAATTC.......................................................................................................... 19 1 1 42.00 42 41 1 0 0 0 0
................................................................CTTGGAACTGGGAGAATTC.......................................................................................................... 19 1 1 42.00 42 39 2 1 0 0 0
................................................................CTTGGCACTGTGAGAATTCA......................................................................................................... 20 1 1 41.00 41 37 4 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCATA....................................................................................................... 22 1 1 39.00 39 29 8 2 0 0 0
................................................................CTTGGCACTGGGAGAATTCAAA....................................................................................................... 22 1 1 38.00 38 32 5 1 0 0 0
................................................................ATTGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 36.00 36 30 0 6 0 0 0
................................................................CTTGGCACTGGGGGAATTCAC........................................................................................................ 21 1 1 34.00 34 28 1 4 0 1 0
................................................................CTTGGCACTGGGAGAATTA.......................................................................................................... 19 1 1 34.00 34 27 4 3 0 0 0
................................................................CTTTGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 33.00 33 22 3 1 0 0 7
................................................................CTTTGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 32.00 32 30 1 0 0 1 0
................................................................CTTGGCACTGGGAGAATTAACAG...................................................................................................... 23 1 1 31.00 31 30 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCACAA...................................................................................................... 23 1 1 29.00 29 27 2 0 0 0 0
................................................................CTCGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 27.00 27 27 0 0 0 0 0
................................................................CTTGGCACTGGGAGGATTCAC........................................................................................................ 21 1 1 26.00 26 18 1 6 0 1 0
................................................................CTTGGCACTGGGATAATTCACA....................................................................................................... 22 1 1 26.00 26 26 0 0 0 0 0
................................................................CTTGGCACTGGGGGAATTCACA....................................................................................................... 22 1 1 26.00 26 17 3 5 1 0 0
................................................................CTTGGCACTGGGAGCATTCA......................................................................................................... 20 1 1 26.00 26 2 4 20 0 0 0
.......................................................................................................GTGGTTCTGCGGGTGCCAAAAT................................................................ 22 0 1 25.00 25 16 0 0 2 3 4
................................................................CTTGGCACTGGGAGAATTAACA....................................................................................................... 22 1 1 25.00 25 23 1 1 0 0 0
................................................................CTTGGCACTGGGAGAATTCACG....................................................................................................... 22 1 1 25.00 25 22 0 3 0 0 0
................................................................CTTTGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 24.00 24 21 2 1 0 0 0
................................................................CTTGGCACTGGGAGAATTAA......................................................................................................... 20 1 1 24.00 24 22 2 0 0 0 0
................................................................TTTGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 23.00 23 12 0 11 0 0 0
................................................................CTTGACACTGGGAGAATTCAC........................................................................................................ 21 1 1 23.00 23 21 0 2 0 0 0
................................................................CTCGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 22.00 22 21 1 0 0 0 0
................................................................CTTGGCACTGGGGGAATTCA......................................................................................................... 20 1 1 22.00 22 11 5 6 0 0 0
................................................................CTTGGCACTGGGAGAATTCACAC...................................................................................................... 23 1 1 22.00 22 14 1 2 0 0 5
.................................................................CTTGCACTGGGAGAATTCACAG...................................................................................................... 22 2 1 22.00 22 17 4 0 1 0 0
................................................................CTTGGCACTGGGAGAGTTCAC........................................................................................................ 21 1 1 22.00 22 19 1 2 0 0 0
................................................................CTTGGCGCTGGGAGAATTCAC........................................................................................................ 21 1 1 22.00 22 21 0 0 0 1 0
................................................................CTTGGCACCGGGAGAATTCAC........................................................................................................ 21 1 1 22.00 22 20 0 2 0 0 0
................................................................CTTGGCACTGGGATAATTC.......................................................................................................... 19 1 1 22.00 22 21 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATCCAC........................................................................................................ 21 1 1 21.00 21 18 2 1 0 0 0
................................................................CTTGGCACTGGGAGAATTCGCAG...................................................................................................... 23 1 1 20.00 20 18 0 1 1 0 0
................................................................CTTGGCACTGGGAGAGTTCACA....................................................................................................... 22 1 1 20.00 20 9 8 3 0 0 0
................................................................CTTGGCACTGGGGGAATTCACAG...................................................................................................... 23 1 1 20.00 20 20 0 0 0 0 0
................................................................CTTGGCACTGGGAGGATTCA......................................................................................................... 20 1 1 20.00 20 10 3 7 0 0 0
................................................................CTTGGCACTGGGAGAACTCAC........................................................................................................ 21 1 1 20.00 20 18 1 1 0 0 0
................................................................CTTGGCACTGGGAGGATTCACAG...................................................................................................... 23 1 1 20.00 20 15 1 3 0 0 1
................................................................CCTGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 19.00 19 10 7 2 0 0 0
................................................................CTTGGCACTGGGAGAGTTCACAG...................................................................................................... 23 1 1 19.00 19 18 0 0 0 0 1
................................................................CTTGGCACTGGAAGAATTCA......................................................................................................... 20 1 1 19.00 19 7 11 1 0 0 0
................................................................CGTGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 18.00 18 1 0 1 0 0 16
.................................................................CTTGCACTGGGAGAATTCACA....................................................................................................... 21 2 1 18.00 18 16 2 0 0 0 0
................................................................TTTGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 18.00 18 12 1 5 0 0 0
................................................................CTTAGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 17.00 17 15 1 1 0 0 0
................................................................CTTGGCACTGAGAGAATTCAC........................................................................................................ 21 1 1 16.00 16 12 0 4 0 0 0
................................................................CTTGACACTGGGAGAATTCACAG...................................................................................................... 23 1 1 16.00 16 11 2 3 0 0 0
................................................................CTTGGCACTGGGAGAATTCGCA....................................................................................................... 22 1 1 16.00 16 14 1 1 0 0 0
................................................................CTCGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 16.00 16 8 5 3 0 0 0
................................................................CTTGACACTGGGAGAATTCACA....................................................................................................... 22 1 1 16.00 16 15 0 1 0 0 0
................................................................CTTCGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 16.00 16 14 1 1 0 0 0
................................................................CTTGGCACTGGGAGACTTCA......................................................................................................... 20 1 1 16.00 16 6 7 3 0 0 0
................................................................CTTGGCACTGGGAGAATCCACAG...................................................................................................... 23 1 1 15.00 15 10 2 2 0 0 1
................................................................CTTAGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 15.00 15 13 0 2 0 0 0
................................................................CTTGGCAATGGGAGAATTCACA....................................................................................................... 22 1 1 15.00 15 12 1 2 0 0 0
................................................................CTTGGCACTGGGAGAATTCACAGTT.................................................................................................... 25 0 1 15.00 15 11 2 1 0 0 1
................................................................CTTGGCACTGGGTGAATTCA......................................................................................................... 20 1 1 15.00 15 0 2 13 0 0 0
................................................................CTTGGCAATGGGAGAATTCA......................................................................................................... 20 1 1 15.00 15 6 2 7 0 0 0
................................................................CTTGGCACTGGGAGAATTTAC........................................................................................................ 21 1 1 15.00 15 15 0 0 0 0 0
................................................................CTTGTCACTGGGAGAATTCACAT...................................................................................................... 23 2 1 14.00 14 14 0 0 0 0 0
................................................................CTTGGCACTGGGCGAATTCA......................................................................................................... 20 1 1 14.00 14 1 3 10 0 0 0
................................................................CTTGGCACTGGGAGAATTCACGG...................................................................................................... 23 1 1 14.00 14 12 1 1 0 0 0
................................................................CTTGGCACCGGGAGAATTCA......................................................................................................... 20 1 1 14.00 14 11 2 1 0 0 0
................................................................CTTGGCACTGGAAGAATTCACA....................................................................................................... 22 1 1 13.00 13 6 5 2 0 0 0
................................................................CTTGGCACTGCGAGAATTCA......................................................................................................... 20 1 1 13.00 13 5 6 2 0 0 0
................................................................CTTGGCATTGGGAGAATTCACA....................................................................................................... 22 1 1 13.00 13 10 0 3 0 0 0
................................................................CTTGGCACTGGGAGAATTTA......................................................................................................... 20 1 1 13.00 13 11 2 0 0 0 0
................................................................CTTGGCACTGGGAGACTTC.......................................................................................................... 19 1 1 13.00 13 7 3 3 0 0 0
................................................................CTCGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 13.00 13 13 0 0 0 0 0
................................................................CTTAGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 13.00 13 11 0 2 0 0 0
................................................................CTTGGCACTGGGAGAGTTCA......................................................................................................... 20 1 1 13.00 13 6 2 5 0 0 0
................................................................TTTGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 13.00 13 6 1 5 1 0 0
................................................................CTTGGCACTGGGAGAATTCG......................................................................................................... 20 1 1 13.00 13 12 0 1 0 0 0
................................................................CTTGGCACTCGGAGAATTCAC........................................................................................................ 21 1 1 12.00 12 9 0 3 0 0 0
................................................................CTTGGCACTAGGAGAATTCACAG...................................................................................................... 23 1 1 12.00 12 11 1 0 0 0 0
................................................................CTTGGCACTGGGAGACTTCACAG...................................................................................................... 23 1 1 12.00 12 8 2 1 0 1 0
................................................................CTTGCCACTGGGAGAATTCACA....................................................................................................... 22 1 1 12.00 12 10 1 1 0 0 0
................................................................CTTGGCAATGGGAGAATTCACAG...................................................................................................... 23 1 1 12.00 12 10 0 2 0 0 0
................................................................CTTGGCGCTGGGAGAATTCACAG...................................................................................................... 23 1 1 12.00 12 12 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCGC........................................................................................................ 21 1 1 12.00 12 12 0 0 0 0 0
................................................................CTTGGCACTGGGAGCATTCACA....................................................................................................... 22 1 1 12.00 12 1 0 9 0 2 0
................................................................CTTGGCACTGGGAGGATTC.......................................................................................................... 19 1 1 12.00 12 7 0 5 0 0 0
................................................................CTTGGCGCTGGGAGAATTCA......................................................................................................... 20 1 1 12.00 12 10 0 2 0 0 0
................................................................CTTGGCACTGGGAGAATTCACC....................................................................................................... 22 1 1 12.00 12 8 1 3 0 0 0
................................................................GTTGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 12.00 12 4 3 5 0 0 0
................................................................CTTGGCACTGGAAGAATTCAC........................................................................................................ 21 1 1 12.00 12 9 2 1 0 0 0
................................................................CTTGGCACTGGGAGAACTCACAG...................................................................................................... 23 1 1 12.00 12 8 0 3 0 0 1
................................................................CTTGCCACTGGGAGAATTCAC........................................................................................................ 21 1 1 12.00 12 8 1 2 0 0 1
................................................................CTTGGCACTGGGAGCATTC.......................................................................................................... 19 1 1 11.00 11 2 0 9 0 0 0
................................................................CTTGGCACTGGGCGAATTC.......................................................................................................... 19 1 1 11.00 11 2 2 7 0 0 0
................................................................CTTGGCACTGGGAGCATTCAC........................................................................................................ 21 1 1 11.00 11 2 0 9 0 0 0
................................................................CTTGGCACTAGGAGAATTCAC........................................................................................................ 21 1 1 11.00 11 8 0 3 0 0 0
................................................................CCTGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 11.00 11 8 1 2 0 0 0
................................................................CTTGGCACTGGGAGGATTCACA....................................................................................................... 22 1 1 11.00 11 8 0 2 1 0 0
................................................................CTTGGCACTGGGAGCATTCACAG...................................................................................................... 23 1 1 11.00 11 5 0 5 0 0 1
................................................................CTTCGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 11.00 11 5 2 4 0 0 0
................................................................CTTGGCACTGCGAGAATTCACAG...................................................................................................... 23 1 1 11.00 11 7 3 0 0 1 0
................................................................CTTGGCACTGAGAGAATTCACAG...................................................................................................... 23 1 1 11.00 11 8 3 0 0 0 0
................................................................CTTGGCACTGGGTGAATTC.......................................................................................................... 19 1 1 11.00 11 4 2 5 0 0 0
................................................................CTTGGCACTGGCAGAATTCAC........................................................................................................ 21 1 1 11.00 11 8 1 1 0 1 0
................................................................CTTGGCACTGGGAGAACTCA......................................................................................................... 20 1 1 11.00 11 8 1 2 0 0 0
................................................................CGTGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 11.00 11 1 0 8 0 0 2
................................................................CCTGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 11.00 11 8 0 2 0 0 1
................................................................CTTGGCACTGGGACAATTCACA....................................................................................................... 22 1 1 10.00 10 6 1 3 0 0 0
................................................................CTTGGCACTGGGAGACTTCAC........................................................................................................ 21 1 1 10.00 10 3 2 5 0 0 0
................................................................CTTGCCACTGGGAGAATTC.......................................................................................................... 19 1 1 10.00 10 9 0 1 0 0 0
................................................................CTGGGCACTGGGAGAATTCACAT...................................................................................................... 23 2 1 10.00 10 10 0 0 0 0 0
................................................................CTTGGCACTGGAAGAATTCACAG...................................................................................................... 23 1 1 10.00 10 8 2 0 0 0 0
................................................................CTTGGTACTGGGAGAATTCA......................................................................................................... 20 1 1 10.00 10 8 2 0 0 0 0
................................................................CTTGGCACTGGGTGAATTCACA....................................................................................................... 22 1 1 10.00 10 1 2 7 0 0 0
................................................................CTTGGTACTGGGAGAATTCAC........................................................................................................ 21 1 1 10.00 10 9 1 0 0 0 0
................................................................CTTTGCACTGGGAGAATTCA......................................................................................................... 20 1 2 10.00 20 16 3 1 0 0 0
................................................................CTTGGCATTGGGAGAATTCAC........................................................................................................ 21 1 1 10.00 10 8 0 2 0 0 0
................................................................CTTGGCACTGGGAGAATCCA......................................................................................................... 20 1 1 10.00 10 6 1 3 0 0 0
................................................................CTTGGCACCGGGAGAATTCACAG...................................................................................................... 23 1 1 10.00 10 10 0 0 0 0 0
................................................................CTTGGCACTAGGAGAATTCA......................................................................................................... 20 1 1 10.00 10 9 0 1 0 0 0
................................................................CTTGGCACTGGGAGAACTCACA....................................................................................................... 22 1 1 10.00 10 10 0 0 0 0 0
................................................................CTTGGCGCTGGGAGAATTCACA....................................................................................................... 22 1 1 9.00 9 8 1 0 0 0 0
................................................................CTTGGCACTGCGAGAATTCACA....................................................................................................... 22 1 1 9.00 9 6 2 1 0 0 0
................................................................CTTGGCACTGGGAGTATTCA......................................................................................................... 20 1 1 9.00 9 1 1 7 0 0 0
................................................................CTTGGCACTGGGAGATTTCAC........................................................................................................ 21 1 1 9.00 9 8 0 1 0 0 0
................................................................CTTGGCACTGGGAGATTTCACA....................................................................................................... 22 1 1 9.00 9 8 1 0 0 0 0
................................................................GTTGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 9.00 9 6 0 3 0 0 0
................................................................CTCGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 9.00 9 7 2 0 0 0 0
................................................................TTTGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 9.00 9 5 0 3 0 0 1
................................................................CTTGGCACTAGGAGAATTCACA....................................................................................................... 22 1 1 9.00 9 8 0 1 0 0 0
................................................................CTTGGCACTGGGACAATTCA......................................................................................................... 20 1 1 9.00 9 4 3 2 0 0 0
................................................................CTTGGCACTGGCAGAATTCACA....................................................................................................... 22 1 1 9.00 9 4 2 3 0 0 0
................................................................CTTGGCACGGGGAGAATTCAC........................................................................................................ 21 1 1 9.00 9 1 0 4 4 0 0
................................................................CTTGGCACTGGGCGAATTCACA....................................................................................................... 22 1 1 9.00 9 1 3 5 0 0 0
................................................................CTTGGCAATGGGAGAATTCAC........................................................................................................ 21 1 1 9.00 9 7 0 2 0 0 0
................................................................CTTGGCACTGGGAGACTTCACA....................................................................................................... 22 1 1 9.00 9 2 3 4 0 0 0
................................................................CCTGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 9.00 9 6 1 1 0 0 1
................................................................CTTCGCACTGGGAGAATTCA......................................................................................................... 20 1 1 9.00 9 5 1 3 0 0 0
................................................................GTTGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 9.00 9 7 0 2 0 0 0
................................................................CTTGGCACTGGGAGAATTCACCG...................................................................................................... 23 1 1 9.00 9 2 0 3 0 4 0
................................................................CTTCGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 9.00 9 6 1 2 0 0 0
.................................................................CTTGCACTGGGAGAATTCAC........................................................................................................ 20 2 2 9.00 18 18 0 0 0 0 0
................................................................CTTGGCACTGGGAAAATTCA......................................................................................................... 20 1 1 9.00 9 6 3 0 0 0 0
................................................................CGTGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 9.00 9 1 0 8 0 0 0
................................................................CTTGGCACTGGGAGAATCCACA....................................................................................................... 22 1 1 9.00 9 7 1 1 0 0 0
................................................................CTTGGCACTGGTAGAATTCACAT...................................................................................................... 23 2 1 8.00 8 8 0 0 0 0 0
................................................................CTTGGCACTGGGAGATTTCA......................................................................................................... 20 1 1 8.00 8 1 4 3 0 0 0
................................................................CTTGTCACTGGTAGAATTCAC........................................................................................................ 21 2 1 8.00 8 8 0 0 0 0 0
................................................................CTTGGCACTGAGAGAATTCA......................................................................................................... 20 1 2 8.00 16 7 4 5 0 0 0
................................................................CTTGGCACGGGGAGAATTCA......................................................................................................... 20 1 1 8.00 8 1 1 1 5 0 0
................................................................CTTGCCACTGGGAGAATTCA......................................................................................................... 20 1 1 8.00 8 4 1 3 0 0 0
................................................................CTTAGCACTGGGAGAATTC.......................................................................................................... 19 1 1 8.00 8 5 2 1 0 0 0
................................................................CTTGGCACCGGGAGAATTCACA....................................................................................................... 22 1 1 8.00 8 5 0 2 1 0 0
................................................................GTTGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 8.00 8 4 1 3 0 0 0
................................................................CTTGGCACTGGGAGAATTTACAG...................................................................................................... 23 1 1 8.00 8 6 0 2 0 0 0
................................................................CTTGGCACTGGGCGAATTCAC........................................................................................................ 21 1 1 8.00 8 0 2 6 0 0 0
................................................................CTTGGCACTGGCAGAATTCACAG...................................................................................................... 23 1 1 8.00 8 5 1 0 0 2 0
................................................................CTTGGCATTGGGAGAATTCA......................................................................................................... 20 1 1 8.00 8 5 2 1 0 0 0
................................................................CTTGGCACTGGGCGAATTCACAG...................................................................................................... 23 1 1 8.00 8 3 3 2 0 0 0
................................................................CTTGGCACTGGGAGAATTCC......................................................................................................... 20 1 1 8.00 8 5 1 2 0 0 0
................................................................CTTGGTACTGGGAGAATTCACAG...................................................................................................... 23 1 1 8.00 8 8 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTTACA....................................................................................................... 22 1 1 8.00 8 7 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCACTG...................................................................................................... 23 1 1 8.00 8 2 0 6 0 0 0
................................................................CTTGGCACTGGGAGAATCC.......................................................................................................... 19 1 1 7.00 7 7 0 0 0 0 0
................................................................CTTGACACTGGGAGAATTCA......................................................................................................... 20 1 1 7.00 7 5 1 1 0 0 0
................................................................CTTGGCACTCGGAGAATTCACAG...................................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0
................................................................CTTAGCACTGGGAGAATTCA......................................................................................................... 20 1 1 7.00 7 5 2 0 0 0 0
................................................................CTTGGCATTGGGAGAATTCACAG...................................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0
................................................................CTTGGCACTTGGAGAATTCACAT...................................................................................................... 23 2 1 7.00 7 6 0 0 1 0 0
................................................................GTTGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 7.00 7 6 1 0 0 0 0
................................................................CTTGGCACTCGGAGAATTCA......................................................................................................... 20 1 1 7.00 7 4 0 3 0 0 0
................................................................CTTTGCACTGGGAGAATTC.......................................................................................................... 19 1 2 7.00 14 13 1 0 0 0 0
................................................................CTTGGCACTGCGAGAATTCAC........................................................................................................ 21 1 1 7.00 7 7 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTTT......................................................................................................... 20 2 1 7.00 7 5 1 1 0 0 0
.......................................................................................................GTGGTTCTGCGGGTGCCAAAA................................................................. 21 0 1 6.00 6 4 0 0 1 0 1
................................................................CTTGTCACTTGGAGAATTCAC........................................................................................................ 21 2 1 6.00 6 6 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTGAC........................................................................................................ 21 1 1 6.00 6 5 0 1 0 0 0
................................................................CTTGGCACTGGGACAATTCAC........................................................................................................ 21 1 1 6.00 6 4 1 1 0 0 0
................................................................CTTGGCACGGGGAGAATTCACA....................................................................................................... 22 1 1 6.00 6 0 1 3 2 0 0
................................................................CTTGCCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 6.00 6 3 0 2 0 1 0
................................................................CTTGGCACTGGGAGTATTCACA....................................................................................................... 22 1 1 6.00 6 1 1 4 0 0 0
................................................................CTTGGCACTGAGAGAATTCACA....................................................................................................... 22 1 1 6.00 6 1 4 1 0 0 0
................................................................CTTGGCAATGGGAGAATTC.......................................................................................................... 19 1 1 6.00 6 3 0 3 0 0 0
................................................................CTTGGCATTGGGAGAATTC.......................................................................................................... 19 1 1 6.00 6 6 0 0 0 0 0
................................................................CATGGCACTGGGAGAATTCAC........................................................................................................ 21 1 1 6.00 6 4 0 2 0 0 0
................................................................CTTGGCACTGGCAGAATTC.......................................................................................................... 19 1 1 6.00 6 2 1 3 0 0 0
................................................................CTTGGCACTGGGGGAATTC.......................................................................................................... 19 1 1 6.00 6 4 0 2 0 0 0
................................................................CTTGGCCCTGGGAGAATTCACAG...................................................................................................... 23 1 1 6.00 6 5 0 1 0 0 0
................................................................CTTGGCGCTGGGAGAATTC.......................................................................................................... 19 1 1 6.00 6 6 0 0 0 0 0
................................................................CGTGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 6.00 6 0 1 2 0 0 3
................................................................CTTGGCACTGGCAGAATTCA......................................................................................................... 20 1 1 5.00 5 1 3 1 0 0 0
................................................................CTTGGCACTGGGAGAATTCACTT...................................................................................................... 23 2 1 5.00 5 5 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCCCAG...................................................................................................... 23 1 1 5.00 5 2 1 2 0 0 0
................................................................CTAGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 5.00 5 1 0 4 0 0 0
................................................................CTTGGCACTGGGAAAATTCACA....................................................................................................... 22 1 1 5.00 5 4 1 0 0 0 0
................................................................CTTGGCACAGGGAGAATTCAC........................................................................................................ 21 1 1 5.00 5 2 0 1 2 0 0
................................................................CTTGGCACTGGGTGAATTCAC........................................................................................................ 21 1 1 5.00 5 3 0 2 0 0 0
................................................................CTTGGCACTGGGAGAATACACA....................................................................................................... 22 1 1 5.00 5 3 2 0 0 0 0
................................................................CTTGGCACTGGGAGAAGTCA......................................................................................................... 20 1 1 5.00 5 0 1 4 0 0 0
................................................................CATGGCACTGGGAGAATTCA......................................................................................................... 20 1 1 5.00 5 2 2 1 0 0 0
.......................................................................................................GTGGTTCTGCGGGTGCCA.................................................................... 18 0 1 5.00 5 1 0 0 4 0 0
................................................................CTTGGCACTGGGAGAATTCCC........................................................................................................ 21 1 1 5.00 5 3 0 2 0 0 0
................................................................CTTGGCACTAGGAGAATTC.......................................................................................................... 19 1 1 5.00 5 3 1 1 0 0 0
................................................................CTTGGCACTGGGACAATTCACAG...................................................................................................... 23 1 1 5.00 5 3 1 1 0 0 0
................................................................CTTGGCACTCGGAGAATTCACA....................................................................................................... 22 1 1 5.00 5 4 0 1 0 0 0
................................................................CCTGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 5.00 5 2 1 2 0 0 0
................................................................CTTGGCACTGGGAAAATTCAC........................................................................................................ 21 1 1 5.00 5 5 0 0 0 0 0
.................................................................CTGGCACTGGGAGAATTCAC........................................................................................................ 20 1 1 5.00 5 4 0 1 0 0 0
................................................................CTTGGCACTGAGAGAATTC.......................................................................................................... 19 1 2 4.50 9 5 2 2 0 0 0
................................................................CATGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 4.00 4 2 2 0 0 0 0
................................................................CATGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 4.00 4 1 2 1 0 0 0
................................................................CTTGGCACTGGAAGAATTC.......................................................................................................... 19 1 2 4.00 8 5 2 1 0 0 0
................................................................CTTGGCTCTGGGAGAATTCACAG...................................................................................................... 23 1 1 4.00 4 3 0 1 0 0 0
................................................................CTTGGGACTGGGAGAATTCAC........................................................................................................ 21 1 1 4.00 4 2 0 2 0 0 0
................................................................CTTGTCACTGGGATAATTCACAG...................................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTCCCA....................................................................................................... 22 1 1 4.00 4 1 0 3 0 0 0
................................................................CTTGGCACTGGGAAAATTC.......................................................................................................... 19 1 1 4.00 4 4 0 0 0 0 0
.....................................................................CACTGGGAGAATTCACAG...................................................................................................... 18 0 1 4.00 4 2 0 0 2 0 0
................................................................CTTGGCTCTGGGAGAATTCA......................................................................................................... 20 1 1 4.00 4 1 1 2 0 0 0
..................................................................TGGCACTGGGAGAATTCAC........................................................................................................ 19 0 1 4.00 4 4 0 0 0 0 0
................................................................CTTGTCACTGGTAGAATTCACAG...................................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATTG.......................................................................................................... 19 1 1 4.00 4 3 1 0 0 0 0
................................................................CTTGGCCCTGGGAGAATTCA......................................................................................................... 20 1 1 4.00 4 2 1 1 0 0 0
................................................................CTTGACACTGGGAGAATTC.......................................................................................................... 19 1 1 4.00 4 4 0 0 0 0 0
................................................................CTTGGCACTGGGAGAATACACAG...................................................................................................... 23 1 1 4.00 4 3 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATACAC........................................................................................................ 21 1 1 4.00 4 3 0 1 0 0 0
................................................................CTTCGCACTGGGAGAATTC.......................................................................................................... 19 1 1 4.00 4 3 1 0 0 0 0
................................................................CTTGGCACTGGGAGAATGCAC........................................................................................................ 21 1 1 4.00 4 0 0 4 0 0 0
................................................................CTTGTCACTGGTAGAATTCACA....................................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0
................................................................CTTGTCACTGTGAGAATTCA......................................................................................................... 20 2 1 4.00 4 4 0 0 0 0 0
..................................................................TGGCACTGGGAGAATTCACA....................................................................................................... 20 0 1 4.00 4 1 1 0 2 0 0
.................................................................CTTGCACTGGGAGAATTCA......................................................................................................... 19 2 3 4.00 12 9 3 0 0 0 0
................................................................CTTGGCACTGGGAGTATTC.......................................................................................................... 19 1 1 4.00 4 0 0 4 0 0 0
................................................................CATGGCACTGGGAGAATTCACAG...................................................................................................... 23 1 1 4.00 4 2 1 1 0 0 0
................................................................CTTGGCACTGGGAGAATTCTC........................................................................................................ 21 1 1 4.00 4 1 0 3 0 0 0
................................................................CTTGGCACTGGGAAAATTCACAG...................................................................................................... 23 1 1 4.00 4 3 0 0 1 0 0
................................................................CGTGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 4.00 4 0 0 4 0 0 0
................................................................TTTGGCACTGGGAGAATTC.......................................................................................................... 19 1 1 4.00 4 1 0 3 0 0 0
................................................................AGTGGCACTGGGAGAATTCACAG...................................................................................................... 23 2 1 4.00 4 0 0 4 0 0 0
................................................................CTTGGTACTGGGAGAATTCACA....................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0
................................................................CTTGGCACTGGTAGAATTCAT........................................................................................................ 21 2 1 3.00 3 3 0 0 0 0 0
................................................................CTAGGCACTGGGAGAATTCACA....................................................................................................... 22 1 1 3.00 3 1 0 2 0 0 0
................................................................CTTGGCACTGGGAGAAATCACA....................................................................................................... 22 1 1 3.00 3 0 1 2 0 0 0
................................................................CTTGTCACTTGGAGAATTCACA....................................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0
................................................................CTTGGGACTGGGAGAATTCACAG...................................................................................................... 23 1 1 3.00 3 2 0 1 0 0 0

Anti-sense strand reads

GCTAGATATTTACTAAAAACACTAAAAACTTAGTTTATAAGACCTGAGAGACGACAGAAACTTAGAACCGTGACCCTCTTAAGTGTCAACTAAAATAATAAGACACCAAGACGCCCACGGTTTTAACTTTATTACCGGATTTTGGAGTTTTTTCCTATAAATAATATTTTATTAAATAAAATTTGTATT

*************************************************..(((((.(((.(((.((((((((...(((((.(((((.((((...))))..))))))))))...)))))))).))).)))..)))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total V055

head
.........................................................................................................CCAAGTCGCCCACCGTTATA................................................................ 20 3 5 0.20 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13337:11320693-11320881 + dan-mir-263b Known_mirbase CG--------AT--CTATAAAT---------------GATTTT--TGTGATTTTT-GAATCA-------------AATATTCTGGACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATGGCCTAAA--ACCTCAAAAAAGGA---------------------TATT--TA-------T------------TATAAAATAATT------------------------------------------------------------TATTTT--------AAACATAA
droBip1 scf7180000396569:85639-85826 - GA--------TC---TAGAGAT---------------GATTTG--TGTGATTTTC-AAAACG-------------AATATTTTGGACTTGCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTT-----TTTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAATAATAGCCTAAA--ACCTCAAAAAATTA---------------------AATA--TT-------T------------TATAAAAGAACA------------------------------------------------------------TAGTTT--------GAACAGAA
droKik1 scf7180000302697:259333-259487 - GG--------AT--TTG-----------------------------GGAAT---------------------CTCTGAATCTTTGAATCTTTGCCTTCTTTGAGCCTTGGCACTGGGAGAATTCACAGTTGATTTTC----AATATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAGCAAAGGCCATAG--ACATCAT-------------CTT--AAAGAAATGT--TG-----------------------------------------------------------------------------------------------------T--------ATCCAAAA
droFic1 scf7180000454065:1467810-1467963 + TG-----TGCTT---------A---------------GA-TTT--TGAGTTTTTG-GT-A------------CCCAAGATCAAG--G-ACTGGCTGGCTGTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ACTATTCTGTGGTTCTGCGGGTGCC-AAAATTCACGTTTCAGCTTTAA--ACAACAA-------------AGG--------------------------------------------------------------------------------------------------------------------TT--------AAAAAAAA
droEle1 scf7180000491000:1283012-1283192 - GA--------T-----------------------------TTT--TGTGTTTTCT-GA-----------------AAGATCATG--G-CCATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCGACGGCTTTAA--ACAACAT-------------TTC-TAAAA--GCAAATTA--TA-------T------------TAATAATTAGCA-------TATTA--AATAGCAGGGAATTC-----------------------------------------------------
droRho1 scf7180000777749:23003-23172 + AT----CTCCCT---------A---------------GATTTT--TGTGTTTCTG-GA-A------------CCCAAGATCAAG-----CTAGCTGCCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAACCGACAGCTTTAA--ACAACAA-------------TTT--TAAAAAGCAA--AATATA------------------------------------------------------------------------------------------------TA--------ATATATAA
droBia1 scf7180000302334:535694-535912 + C--------CTC-A-----GA-------------------CTG--TGTGCCCGTG-GA-A------------CGCTAGATCTTC--A-TTCAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTC-----AAAACTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCTCGACTCTGC--ACAACGA-------------CTA--AAAAAACT----------ACCAGTTCGACAAAAGGT--TAAAGAACGATTGC-------ATA--TAGTATT--------------GGGAAAAGG-------------------TTTTAATATGAGGTTATAA
droTak1 scf7180000415815:87934-88143 - GA--------G-----------------------------TCT--TGTGTTTCTG-TA-A------------TCCTTGATCATG--A-TATAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCACGGCTCTAA--CCAACGA-------------CCT--AAAAATAA--AAAA--TA-------T------------TAAAAAAGAATTTGGCCCCTTTTA--ATTTGTA--------------AGGAAAATGGTAAAACC------------TG--------GAATATAG
droEug1 scf7180000408844:587078-587250 - C--------TAA-------------------------GAATTT--TGTGTTTTTAGGA-A------C------CAGAGAG---------CATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ATTAGTCTGTGGTTCTGCGGGTGCC-AAAATTTAAGCTACAGCTATAA--GCAACTTTAA----------C---------------------------------------------------------------------TTAAAGGAGGGTTCTTAGAGAACTAGAAGA---------------TAGTCT----------------
dm3 chr3L:15836468-15836620 - dme-mir-263b Known_mirbase CG--------A------------------------------------------------------TCCAGAGCTGTAGCTCTTC--A-ATTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTGT--ACAACGA-------------TTTCTAAGCCATT----------ACAAT-------------------------------------------------------------------------------------------TT--------GAACAAAA
droSim2 3l:15464143-15464370 - dsi-mir-263b Known_mirbase C--------TTTTA-----AACTGG----------------------CG---------------ATCCAGAGCTCTAGCTCTTC--A-ATTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTG-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTAT--ACAACAA-------------ATTCTTAACAATT----------ACAATTTAAGCAA-----CA----------------------TAAAATTAGTGGAGCATTCTTAGGTTAGTAAATGGATTAGCCTGAGTACATGG-AT--------ATACATAG
droSec2 scaffold_0:7944311-7944527 - dse-mir-263b Known_mirbase C--------TTTTA-----AACTGG----------------------CG---------------ATCCAGAGCGCTAGCTCTTC--A-ATTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTG-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTAT--ACAACGA-------------TTTCTAAACAATT----------ACAATTTAAACAA-----TA----------------------TAAAATTAGTAGAGCGTTCTTAGGTTAGTAAATGGAGTAGCCTGAG--------------------TACTGA
droYak3 v2_chr3L_random_102:4479-4603 - dya-mir-263b-2 Known_mirbase C--------TTAGA-----AACTGG----------------------CG---------------ATCCAGAACGATAGCTCTTC--A-ATCTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:18090101-18090278 - der-mir-263b Known_mirbase C--------TTAGC-----CACTGG----------------------CG---------------ATTCAAAC----------------CATAGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACAGCTCCAT--ACAACGA-------------TA---------------------AAAAATTAAACAT-----AA----------------------TAATATTAGTAGGGAGTTCTTAGGATT---------------------------TT--------AAATGGAG
dp5 XR_group6:3598043-3598196 - dps-mir-263b Known_mirbase GGAAAAGTGTTT------AGCT---------------TAGTTT--AGCTTAGTTT-GAGACAACGACTA----CGGCGATCG----T-TATTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCA---TATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCGGCTCGAA--AC-----------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:1894041-1894137 - dpe-mir-263b Known_mirbase -------------------------------------------------------------------------------------------TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCA---TATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCGGCTCGAA--AC-----------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004540:1452382-1452563 + dwi-mir-263b Known_mirbase AA--------TT--CTAAGAAA---------------GATT-TTCTGTGTGTGTTTGA-ACG-------------AAAATAA----A-GTCTGCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGCTGTGA-TCATCGAAAAAGAA-ATCAAATG-------------------------------------------AA---A----------------------------------------------------------------ACTTT--------AAACCGAA
droVir3 scaffold_13049:24412471-24412650 - dvi-mir-263b Known_mirbase CA--------AC--TCGCCAGA---------------GAATAT--TGTGTTCTTC-TA--CG-------------GAAAGCA----G-AGCTACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACAT---AATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTGGACCAAG--ACAGCCTGAAACTAAA-CAATTG--T-----GT---------------------------------AA---AACA------------------------------------------------------------TA--TT--------ACAAGCAA
droGri2 scaffold_15110:24319761-24319930 - dgr-mir-263b Known_mirbase T--------CTAGA-----AATGATCAACTCACTGAAAAATAT--TGT---------------------------------GGA--A-AGCTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATAT---AATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTGGACATAGAAACAACC---------------TG--AAAAACGCAA--CATATC-------A-----------------AATAATT--------------------------------------------------------------------------------TA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CG--------AT--CTATAAAT---------------GATTTT--TGTGATTTTT-GAATCA-------------AATATTCTGGACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATGGCCTAAA--ACCTCAAAAAAGGA---------------------TATT--TA-------T------------TATAAAATAATT------------------------------------------------------------TATTTT--------AAACATAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................21117321.00173217281888644615891
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................23115088.0015088112999762563513520
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................20112018.00120187907125919048769
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................22110883.001088384134383312338677
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1916895.00689516004574176005
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................231238.0023800313231
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................201113.0011310016888
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................211110.001101008794
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................241103.001030015493
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................221101.0010111015183
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................19198.0098100171169
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................20191.009110004176
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................18189.008910038347
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................21174.00741001666
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19159.005910009931
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................18157.00571007247
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22154.005400110340
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21153.00537001540
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................21152.00520000547
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................24144.00441002140
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................19134.00340003427
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23129.00290000227
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT................................................................................................................................................................................22125.00252430016
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................22125.00250003022
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................23122.00220502114
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................25115.00150101211
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................20113.00130001012
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22112.0012000318
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................2018.008000215
.........................................................................................................CTTGGCACTGGGAGAATTTT...............................................................................................................................................................................................................................2017.007000115
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2116.006110004
.........................................................................................................CTTGGCACTGGGAGAATTCACTT............................................................................................................................................................................................................................2315.005000005
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1815.005400001
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................1814.004200002
...........................................................................................................TGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................1914.004000004
.........................................................................................................CTTGGCACTGGGAGAATTG................................................................................................................................................................................................................................1914.004000013
...........................................................................................................TGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2014.004200011
droBip1
GA--------TC---TAGAGAT---------------GATTTG--TGTGATTTTC-AAAACG-------------AATATTTTGGACTTGCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTT-----TTTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAATAATAGCCTAAA--ACCTCAAAAAATTA---------------------AATA--TT-------T------------TATAAAAGAACA------------------------------------------------------------TAGTTT--------GAACAGAASizeHit CountTotal NormTotal
No Reads
droKik1
GG--------AT--TTG-----------------------------GGAAT---------------------CTCTGAATCTTTGAATCTTTGCCTTCTTTGAGCCTTGGCACTGGGAGAATTCACAGTTGATTTTC----AATATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAGCAAAGGCCATAG--ACATCAT-------------CTT--AAAGAAATGT--TG-----------------------------------------------------------------------------------------------------T--------ATCCAAAASizeHit CountTotal NormTotal
No Reads
droFic1
TG-----TGCTT---------A---------------GA-TTT--TGAGTTTTTG-GT-A------------CCCAAGATCAAG--G-ACTGGCTGGCTGTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ACTATTCTGTGGTTCTGCGGGTGCC-AAAATTCACGTTTCAGCTTTAA--ACAACAA-------------AGG--------------------------------------------------------------------------------------------------------------------TT--------AAAAAAAASizeHit CountTotal NormTotal
No Reads
droEle1
GA--------T-----------------------------TTT--TGTGTTTTCT-GA-----------------AAGATCATG--G-CCATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCGACGGCTTTAA--ACAACAT-------------TTC-TAAAA--GCAAATTA--TA-------T------------TAATAATTAGCA-------TATTA--AATAGCAGGGAATTC-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AT----CTCCCT---------A---------------GATTTT--TGTGTTTCTG-GA-A------------CCCAAGATCAAG-----CTAGCTGCCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAACCGACAGCTTTAA--ACAACAA-------------TTT--TAAAAAGCAA--AATATA------------------------------------------------------------------------------------------------TA--------ATATATAASizeHit CountTotal NormTotal
No Reads
droBia1
C--------CTC-A-----GA-------------------CTG--TGTGCCCGTG-GA-A------------CGCTAGATCTTC--A-TTCAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTC-----AAAACTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCTCGACTCTGC--ACAACGA-------------CTA--AAAAAACT----------ACCAGTTCGACAAAAGGT--TAAAGAACGATTGC-------ATA--TAGTATT--------------GGGAAAAGG-------------------TTTTAATATGAGGTTATAASizeHit CountTotal NormTotal
No Reads
droTak1
GA--------G-----------------------------TCT--TGTGTTTCTG-TA-A------------TCCTTGATCATG--A-TATAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCACGGCTCTAA--CCAACGA-------------CCT--AAAAATAA--AAAA--TA-------T------------TAAAAAAGAATTTGGCCCCTTTTA--ATTTGTA--------------AGGAAAATGGTAAAACC------------TG--------GAATATAGSizeHit CountTotal NormTotal
No Reads
droEug1
C--------TAA-------------------------GAATTT--TGTGTTTTTAGGA-A------C------CAGAGAG---------CATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTC-----ATTAGTCTGTGGTTCTGCGGGTGCC-AAAATTTAAGCTACAGCTATAA--GCAACTTTAA----------C---------------------------------------------------------------------TTAAAGGAGGGTTCTTAGAGAACTAGAAGA---------------TAGTCT----------------SizeHit CountTotal NormTotal
No Reads
dm3
CG--------A------------------------------------------------------TCCAGAGCTGTAGCTCTTC--A-ATTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTGT--ACAACGA-------------TTTCTAAGCCATT----------ACAAT-------------------------------------------------------------------------------------------TT--------GAACAAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................201136070.00136070000045400002100010100001380512112853749144201000102010010100000065461800000000000000000000071603400021643131774497199204491018260040110231710467567119586028531651251373162280000000000002000011061000000000000050173722240102834287593305851417252031772500000926194271600022019000000000000000002204662111101122400055100263003751214570029178122627001021587100000000000000733335514218011030863171346125961068399938042497132037123452601884540097400270123100043253156567101393204327003207300010
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................211117603.00117603000051700320010300120001210949255969067711600100100101001001020008130110000000000000000000018264564011326431922448181141387456931544292211272229414173112449860125013742146228665415234000000010000390000217110300003000000025092648018372513458789657592918449839965710000012853753916000420210020012280000000081741100141041101514920011910018621302331278390025993632582001022801000000000100000105372853172700101856735659317845962226965232198661224518800361889721017212771190055210218812450351757852497369031502200200
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................23190481.0090481000015001152521400001000004005048511045054966600000100001000000010003210000000000000000000001201357248100023254517412628281551018037450010011116879407333017411053196121634725214400000010004443532100013900000000000003015011281092310454281618124551591458134425445650000076029411500080140000010100000000016182241362112100000000109310821128480170003353622288001001522000000000000000179862121151101104262426271865239917427267103951256901937422503045576812513171120011501001636250532434715195614181888200410
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................19163866.006386600000000000000000100001004006111521012200110000002000000000004310000000000000000000008000000042780049570011164100000110121021553501002515190551788570000000000000000000013000000020000000519975023331661241116395171376312010002116311600050300000000000000000001239011161020000030054011554017000260645123300000729000000000000000112260404010082736150721283598308626114113516249111716265401021403000000040287929827263344654415801549500000
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................22161024.0061024000022100216127000041000040201022564354693400010000100000000000002016900000000000000000000054435463510849299831722943826211913079516001327204225924762128105602393014941602122311700000000000180010100310001000100000111213291205098240122475416247026882118204945800007324203460001802400000000000100000217173324101927136100133110052642901244921500445227302750000010850000110000000001026321317525012072270277514721784143143211966314381410224624121033755032616145108921521169130512467594155611451387501210
.........................................................................................................CTTGGCACTGGGAGAATTCACATC...........................................................................................................................................................................................................................24122154.00221540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187623392000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCAATC............................................................................................................................................................................................................................2316295.00629500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482813000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................1812925.002925000000000000000000000000000140141302000000000000000000000012000000000000000000000010000000000100300000020000000000000701450102002359900000000000000000000000000000000000026122019017130145620767000001840000001010000000000000000000400000000000000000000530200084907000001600000000000000010000000000022131292113942164120000012805399000000000010000043879468131144000000
.........................................................................................................CTTGGCACTGGGAGAATTCATC.............................................................................................................................................................................................................................2211225.00122500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000001046174000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC................................................................................................................................................................................2211152.0011520000000113900200000000000000010000000000000000000000000000100000000000000000000006111462337201163741171510837344020000102287210100000000000010000000000000000000000000000000000000020010011110000000002000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000100000000000
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................1911006.0010060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000020000000020100000000000000000000000000000000000001016020034041601000000040000000000000000000000000000000000000000000100000012000012501000002000000000000000000000000000029101236000005000013081100000000000000006270354026000000
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................211992.0099200002000000000000000000100000000000000000000000000000000000000000000000000000000000000000122011201001115000000000000001120301020501820000000000000000000000000000000000002929026001140605228410000011001000000200000000000000000000000010100000091003000101000520600000150000000000000001421000000000596658540130010000670405800001000000000007135107984100000
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................191682.0068200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000410103010601400000000000000000000000000000000000051907207505013012000000100000000000000000000000000000000000000000000000000028000021030000070000000000000000000001000000442431410202011200660274900010000000000002914542861315000000
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................201646.00646000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110031300009100000100000001110001000615300000000000000000000100000000000000020190100051011202033210000014000200000100000000000000000000000001100000000000101600006205000001200000000000000000000000000001937132804310000004803946000000000000000099927313167000000
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................201596.00596000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010040001000000000000000000003000000005131000000000000000000000000000000000000182007000000050700000010010000000000000000000000000000000000000000010000032200031301000002000000000000000000000000000016881200020400001307800000000000000003635660356000000
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................201542.0054200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005000000000000000000000232020200013216110000000000000000000000000000000000008901000100020200000000000000000000000000000000000000000000000000100000001800006601000002000000000000000000000000000093527001103000025103548000000000000000001022344000000
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................221523.00523000000000000000000000000000002850100000000000000000000000000000000000000000000000001000000000020000000000000000010004000000101013000000000000004000000000000000000000131709502729012221219000009000000000000000000000000000001100000000000010002500700002001000005000000000000000011000000000014177147346000001021024220000000000000000101051136715000000
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................191470.004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100010110000000000000000000000000000000000007801000411011011000000000100000000000000000000000000000000000000001000000130000040300000200000000000000000000000000004341321600000200101401416000000000000000016187120344000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................241414.00414000000000000000000000000000000000000000000000000000000001000000000000000000000000001130000001002001020200000001023000520000000002000000000000010000000100000000000000088071003061219200000210000000000000000000000000000000000000000000100201400100001100000006000000000000000001000000000067775498300000080711000000000000000051121111777000000
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................211410.00410000040000000000000000000000000000000000000000000000000000000000000000000000000001000000000060000000111510000000000000600000100409100000000000000000000000000000000000013190160018011090180000006000000000000000000000000000000000000000000041001001200003207000001200000000000000000020000000001513121930320200002003134000000000000000055371040000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................231367.00367000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000010103412000000000000000000000000000000000000085030002010124000000100000000000000000000000000000000000000000001411900320100000420000000200000000000000001000000000001055436610000003048000000000000000065692626000000
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................221362.00362000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000010000001000000000000001510010202010013900000000000000000000100000000000000016601000000001000000001001000000000000000000000000000000000000000023100320016100023010000030000000000000000000000000000342704220000001240211700000000000000001930321000000
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................211351.00351000000000000000000000000000000980000000000000000000000000000000000000000000000000000200000100040100000000000000110006200020102100000000000000000000000000000000000000440810380901101240000010100000000000000000000000000000000000000000000001301700000201000001000000000000000000020000000007939152301010230014190000000000000000363164448000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................241344.00344000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000010000000000000000000100002000000100000000000000000000000000000000000000000480131129010701300000020000000000000000000000000000000000000000000502800420020000320200000400000000000000000000000000009891111062000010130510000000000000000036488542000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................231306.0030600002000140000000000000000000000000000000000000000000000000000000000000000000000020150000002006000030300000000000000410000010001300000000000000000000000000000000000081308000702071280000001301000010200000000000000000000000000100000026100004001000020020000020000000000000000000010000000132399141000000011099001100000000000023421222000000
.........................................................................................................CTTGGCACTGGGAGAATTCACTC............................................................................................................................................................................................................................231289.00289000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000022462000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................181256.002560000000000000000000000000000011300000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020011000000000000000000000000000000000000002502001311040400000020000000001000000000000000000000000000000000000000015000010010000030000000000000000000000000000651119000000000014011600000000000000001197142265000000
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................201241.0024100001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001200000000000000110000000113100000000000000000000000000000000000071303000003080140000004000000000000000000000000000000000000000000000000003200005100000003000000000000000000000000000016129130011010000170516000000000000000004884344000000
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................211195.001950000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000041000000000000000000000000300000000000000000000000000000000000008704000302012135000000100000000000000000000000000000000000000000000000110010000400000000700000000000000000000100000001016930002000000601017000000000000000021741000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................231192.0019200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000101000000000000000000000000000000000000068010002010100000000500000000000000000000000000010000000000000003380021012000022000000010000000000000000000000000000727102293100000013036000000000000000011831311000000
..........................................................................................................TTGGCACTGGGAGAATTCACATC...........................................................................................................................................................................................................................231176.00176000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014333000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................221150.0015000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000500000000000010210000011002000000000000000000000000000000000000057050000010007000000000000000000000000000000000000000000000000006000310220000320200000400000000000000000000000000001254021300000040310000000000000000014231012000000
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................221143.001430000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000020000100000300000000000000000000000000000000000005708000201020800000000000000000000000000000000000000000000000000000000002000010000000030000000000000000000000000000931702220000009067000000000000000023243212000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................211131.0013100000000200000000000000000000000000000000000000000000000100000000000000000000000000433700010111120010317000000000920000000000000030000000000000000000000000000000000000100010000004000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000010000000000000000000000000000000420000000000
droSim2
C--------TTTTA-----AACTGG----------------------CG---------------ATCCAGAGCTCTAGCTCTTC--A-ATTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTG-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTAT--ACAACAA-------------ATTCTTAACAATT----------ACAATTTAAGCAA-----CA----------------------TAAAATTAGTGGAGCATTCTTAGGTTAGTAAATGGATTAGCCTGAGTACATGG-AT--------ATACATAGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2319641.0096416820474384728887299523162350200002
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2214331.00433129830292159310919851244361003000
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2112823.0028237014351531088153151592361722402000
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................201535.005351670497693891317662413000
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................191405.0040516531011915289911403011
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................181107.001075100138030131000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................24155.00551000001030170600000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................24143.004300001102161101200000
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................22135.0035010000112402600000
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23123.0023100000021260200000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC................................................................................................................................................................................22114.001401021700000300000
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................23113.001300000000540400000
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21112.001200000100610400000
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................20110.001040000100120200000
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................18110.001021500000200000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGC...........................................................................................................................................................................................................................2417.00700000000500200000
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................2316.00610200000100200000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1815.00520000200100000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAA..................................................................................................................................................................................2015.00500000300000200000
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................2114.00410000000110100000
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................2214.00411000000010100000
.............................................................................................................GCACTGGGAGAATTCACA.............................................................................................................................................................................................................................1813.00300000000210000000
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................1913.00321000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................2213.00310000000010100000
...........................................................................................................TGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................1912.00200000200000000000
............................................................................................................GGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2012.00200200000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................2112.00200000000020000000
...........................................................................................................TGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2012.00200000000110000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2112.00200000000000101000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTA..........................................................................................................................................................................................................................2512.00200000000000200000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AA...................................................................................................................................................................................1912.00200000200000000000
.........................................................................................................CTTGGCACTGGGAGAAT..................................................................................................................................................................................................................................1712.00200000000020000000
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................1912.00200000000020000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGAA..........................................................................................................................................................................................................................2512.00200000000110000000
...........................................................................................................TGGCACTGGGAGAATT.................................................................................................................................................................................................................................1611.00100000000010000000
..............................................................................................................CACTGGGAGAATTCACA.............................................................................................................................................................................................................................1711.00100000001000000000
............................................................................................................GGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................1811.00100000000001000000
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................2211.00100000000000100000
droSec2
C--------TTTTA-----AACTGG----------------------CG---------------ATCCAGAGCGCTAGCTCTTC--A-ATTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTG-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTAT--ACAACGA-------------TTTCTAAACAATT----------ACAATTTAAACAA-----TA----------------------TAAAATTAGTAGAGCGTTCTTAGGTTAGTAAATGGAGTAGCCTGAG--------------------TACTGASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................20118329.001832916762338910301
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................23115116.00151166147985325099
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................22114114.00141149225665335316
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2119069.0090691019515246584
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1916278.00627811119205138
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................181275.002750242249
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................191171.001710490122
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................241121.00121059620
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................201121.00121039082
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................22191.00912104930
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21189.00893123539
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19187.0087126060
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................24173.00730103924
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................19150.0050015035
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................20146.004628135
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................21144.0044015128
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................18139.003901038
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................22132.0032051611
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23125.002503616
.........................................................................................................CTTGGCACTGGGAGAATTCACAGC...........................................................................................................................................................................................................................24124.002401194
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22123.002307115
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................20119.001909010
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................20115.001503210
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22112.00120363
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................21111.00110308
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................25110.00100073
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................23110.00100226
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1818.0080008
.........................................................................................................CTTGGCACTGGGAGAATTG................................................................................................................................................................................................................................1917.0070700
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................2316.0060024
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTA..........................................................................................................................................................................................................................2515.0050032
.........................................................................................................CTTGGCACTGGGAGAATTTT...............................................................................................................................................................................................................................2054.202101308
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC................................................................................................................................................................................2214.0043001
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................2114.0040121
........................................................................................................TCTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................2114.0040004
.............................................................................................................GCACTGGGAGAATTCACA.............................................................................................................................................................................................................................1814.0040031
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1913.0030012
.........................................................................................................CTTGGCACTGGGAGAATTCACAGAA..........................................................................................................................................................................................................................2513.0030030
.........................................................................................................CTTGGCACTGGGAGAATTCATT.............................................................................................................................................................................................................................2213.0030102
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................1813.0031011
..........................................................................................................TTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................2313.0030030
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2112.0020011
.............................................................................................................GCACTGGGAGAATTCACAG............................................................................................................................................................................................................................1912.0020002
droYak3
C--------TTAGA-----AACTGG----------------------CG---------------ATCCAGAACGATAGCTCTTC--A-ATCTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................2021596.50319328719446125513921000
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2321357.50271520275631305601396000010
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................212862.501725219219502016107300110
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................222613.001226133549225742176130000
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................192397.007942713011554021960000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................24221.50430127131010000
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................18220.50411100132320010
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT................................................................................................................................................................................22217.5035012770000000
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................22214.002806472090000
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................20211.5023010041350000
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19211.5023011001470000
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................21211.0022010021450000
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2029.0018012010320000
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................2328.0016101400100000
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................2027.5015000021300000
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................1927.501501002930000
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2127.501511022270000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................2426.001200461010000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2124.50900450000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGC...........................................................................................................................................................................................................................2423.50700610000000
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................2023.00600001410000
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................2222.50500021110000
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................1922.50510000400000
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................2122.50500001400000
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................2222.50500001040000
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................1822.00420110000000
..........................................................................................................TTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................2322.00400220000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................2321.50300110010000
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................2221.50310010100000
...........................................................................................................TGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2121.50301200000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................2521.50300120000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................2321.00200001010000
..........................................................................................................TTGGCACTGGGAGAATTCACAGC...........................................................................................................................................................................................................................2321.00200200000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAATT...............................................................................................................................................................................2321.00200110000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC................................................................................................................................................................................2221.00200200000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTA..........................................................................................................................................................................................................................2521.00200110000000
.........................................................................................................CTTGGCACTGGGAGAAT..................................................................................................................................................................................................................................1721.00200000200000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAA..................................................................................................................................................................................2021.00201010000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1821.00202000000000
...................................................................................C--A-ATCTGCTGACTTTGAGC...................................................................................................................................................................................................................................................1921.00200200000000
.........................................................................................................CTTGGCACTGGGAGAATTCTT..............................................................................................................................................................................................................................2120.50100000100000
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-AA...................................................................................................................................................................................2020.50100000100000
droEre2
C--------TTAGC-----CACTGG----------------------CG---------------ATTCAAAC----------------CATAGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTT-----ATTATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACAGCTCCAT--ACAACGA-------------TA---------------------AAAAATTAAACAT-----AA----------------------TAATATTAGTAGGGAGTTCTTAGGATT---------------------------TT--------AAATGGAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................23121507.00215073713284520652065163630
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................21119123.00191232248351852319157580
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................20115856.0015856260687475095100010
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................22115054.001505431208075082250114380
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1916373.006373201356165145790
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................181298.0029821130961860
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................231261.002610052132320
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................231175.00175008621590
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................231167.00167031821530
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................221124.001244181413840
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................211110.00110006012920
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................201108.00108207216810
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19185.0085007025530
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................19175.0075103027440
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................24169.006910435560
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21164.006420628460
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................20150.0050001014350
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................19142.004200205350
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................24140.004000373270
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22137.003700214300
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................18125.002500106180
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................21122.002200103180
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................22121.002100013170
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22120.00200174080
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................20116.001600402100
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT................................................................................................................................................................................22115.00153304050
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................2028.501700104120
.........................................................................................................CTTGGCACTGGGAGAATTCACAGC...........................................................................................................................................................................................................................2416.0060002130
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................2516.0060100140
...........................................................................................................TGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2116.0060001050
.........................................................................................................CTTGGCACTGGGAGAATTCACAGG...........................................................................................................................................................................................................................2415.0050000230
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2115.0050002030
.........................................................................................................CTTGGCACTGGGAGAATTCACCT............................................................................................................................................................................................................................2315.0050005000
............................................................................................................GGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2014.0040010030
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTA..........................................................................................................................................................................................................................2514.0040011110
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................2114.0040021010
dp5
GGAAAAGTGTTT------AGCT---------------TAGTTT--AGCTTAGTTT-GAGACAACGACTA----CGGCGATCG----T-TATTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCA---TATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCGGCTCGAA--AC-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2115907.005907013621644115825996171929
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2214625.004625074161016311041883941362
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................2014381.004381020911201169277105205
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2313007.00300706015417421848105112453
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1911163.0011632711873297140031
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................18153.0053090003011003
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................20149.0049011001919018
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................24142.0042004111460115
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................19141.004104000829000
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19140.0040018000517000
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21137.0037011002713004
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................22133.00330610776006
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................20132.003204000226000
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23130.003000210770013
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................21126.002602000137004
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22115.00150000087000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT................................................................................................................................................................................22112.00120280001001
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22110.00100000046000
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................23110.00100030141010
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1819.0090200025000
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................2317.0070000051001
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................2416.0060101011002
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................2016.0060000024000
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................2015.0050000014000
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................2114.0040000121000
.........................................................................................................CTTGGCACTGGGAGAATTCACAAA...........................................................................................................................................................................................................................2413.0030000010002
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................2513.0030100011000
...........................................................................................................TGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................1912.0020200000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2112.0020000200000
........................................................................................................TCTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2212.0020200000000
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................2212.0020000020000
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................2212.0020020000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC................................................................................................................................................................................2212.0020020000000
..........................................................................................................TTGGCACTGGGAGAATTT................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................TGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2111.0010100000000
......................................................................................T-TATTGCTGGCATTGGCT...................................................................................................................................................................................................................................................1811.0010000100000
.........................................................................................................CTTGGCACTGGGAGAATTCTT..............................................................................................................................................................................................................................2111.0010000001000
..........................................................................................................TTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................2311.0010000010000
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-.....................................................................................................................................................................................1811.0010100000000
..............................................................................................................CACTGGGAGAATTCAC..............................................................................................................................................................................................................................1611.0010000000001
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................1921.0020000020000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1811.0010100000000
droPer2
-------------------------------------------------------------------------------------------TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCA---TATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCGGCTCGAA--AC-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................2017464.007464041611035642699
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2115895.0058951113011424076635
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2212671.002671241089311299327
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1912426.0024260013131829283
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2312156.002156242180841802307
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................181165.00165002171397
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................21160.00600009474
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................19147.00470008354
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................20136.003600011223
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19134.00340105262
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................20133.00330003273
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23128.002820110141
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22123.00230005171
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................21121.00210002190
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................20119.00190001180
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21117.0017000863
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................22116.0016004921
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................18113.00130001120
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22113.00130002110
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................20112.0012000390
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................24111.0011001550
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................2416.006001230
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................2216.006000051
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................2315.005000221
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................1925.0010000190
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................2314.004000220
.........................................................................................................CTTGGCACTGGGAGAATTCTT..............................................................................................................................................................................................................................2113.003000021
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................2113.003010020
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................1813.003200100
...........................................................................................................TGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................1812.002000200
droWil2
AA--------TT--CTAAGAAA---------------GATT-TTCTGTGTGTGTTTGA-ACG-------------AAAATAA----A-GTCTGCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGCTGTGA-TCATCGAAAAAGAA-ATCAAATG-------------------------------------------AA---A----------------------------------------------------------------ACTTT--------AAACCGAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................23168864.006886485888004209525796
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................22125596.00255965653911834516231
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................21123686.00236864525650149121475
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................2019011.00901171417813066903
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1917679.007679342444447155
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................221313.00313089175121
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................241309.00309014172132
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................231144.001440029646
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................211125.001250064673
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................201118.001180155107
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................211105.001050032100
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................20194.00940012082
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................24193.00930015042
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT................................................................................................................................................................................22190.00900107613
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................18187.00871222260
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23177.00771111856
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................23164.00644022731
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22150.0050023045
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................19141.0041013136
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22137.0037002629
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19137.00370210223
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................18133.0033002031
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................22127.00271001115
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................25122.0022000139
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................21120.0020000020
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................20117.0017001115
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................21117.0017000161
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................19215.5031002029
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................20115.0015003012
.........................................................................................................CTTGGCACTGGGAGAATTCAG..............................................................................................................................................................................................................................21115.001500267
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAAA.................................................................................................................................................................................22112.0012000120
...........................................................................................................TGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................19110.0010000010
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-A....................................................................................................................................................................................1919.00900081
.............................................................................................................GCACTGGGAGAATTCACAG............................................................................................................................................................................................................................1919.00900036
..........................................................................................................TTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................2318.00800044
...........................................................................................................TGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2117.00701015
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................1817.00731030
...........................................................................................................TGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2017.00701006
............................................................................................................GGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................1816.00600006
.........................................................................................................CTTGGCACTGGGAGAATTCACAGC...........................................................................................................................................................................................................................2415.00500050
.........................................................................................................CTTGGCACTGGGAGAATTCCAG.............................................................................................................................................................................................................................2215.00500023
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAA..................................................................................................................................................................................2114.00400031
............................................................................................................GGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2014.00400013
.............................................................................................................GCACTGGGAGAATTCACA.............................................................................................................................................................................................................................1814.00400031
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAA..................................................................................................................................................................................2014.00400031
droVir3
CA--------AC--TCGCCAGA---------------GAATAT--TGTGTTCTTC-TA--CG-------------GAAAGCA----G-AGCTACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACAT---AATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTGGACCAAG--ACAGCCTGAAACTAAA-CAATTG--T-----GT---------------------------------AA---AACA------------------------------------------------------------TA--TT--------ACAAGCAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................20120306.002030666107001220300001134780445103316397651015631273010011684201150000110000000000000000000132544890801001000000001100
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................22117768.0017768133142150401011001190388771716001415756713981469000011818620090004020000000012340320021161881432568502200300000022217915
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................23116599.00165993043291060500080000223998764817841123967131760213311020252014352710791411000011122261613170015856191095145004336120200208490385139196
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................21113385.0013385192658301011600001602866572145918377197174214791210212168350801121300000000000100000464412171578008102000000037716
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1914610.00461038641700130002000191132105210308176031428700020262306002011000000000000000000011136159900000000000000001
.........................................................................................................CTTGGCACTGGGAGAATT.................................................................................................................................................................................................................................181289.002891160000000000011156122412026201000001000000000000000000000000000400736900000000000003211
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................221142.001420144000000000014651692071600000000100000000000000000101100001110131500000000000001841
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................191133.00133001200000000000104136301080000000000000000000000000000000000000205600000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................241132.001320000000000000026759940620000000000000010000000000000001000001181900001000000006503
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................211131.00131006000000000001646156605110000010000000000000000000000000000010114100000000000001010
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................191104.00104004000000000001444410770000000000000000000000000000000000000254300000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................21199.0099110000000000009115710708120000010100000100000000000000000000000101500000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................23199.0099000000000000101692126110111600000000002001000000000000000000000011700000000000002010
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................20187.008700410000000000108271050177000000000000000000000000000000000000061000000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................24182.008200100000000000888653146000001000000000000000000000000000011161000000000000004521
.........................................................................................................CTTGGCACTGGGAGAATTCT...............................................................................................................................................................................................................................20181.0081002000000000002312210260000000000000000000000000000000000000223800000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................22155.005500000000000000631118205300000101000000000000000000000000000064400000000000000000
..............................................................................................................CACTGGGAGAATTCACAG............................................................................................................................................................................................................................18153.005302010000000000000100000000000000000000000000000001435910012200000001000000001100
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................23149.004900000000000000230730076000000000000000000000000000000000000107400000000000000000
..........................................................................................................TTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................23133.00330003000000000032001002300000000000000000000000000011021000211200000000000004310
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................22132.003214000000000000211201000000000000000000000000000000000000000161300000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCG...............................................................................................................................................................................................................................20131.0031000000000000003100100310000000000000000000000000000000000000121000000000000000000
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................18130.003011400001000000021001020000000000000000000000000000000000000071000000000000000000
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT................................................................................................................................................................................22128.00280035000000000021042000200000000000000000000000000110200000041000000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................22128.00280000000000000022121003000000000000000000000000000000000000009800000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................20128.00280000000000000011024207200000000000000000000000000000000000006300000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCAT..............................................................................................................................................................................................................................21127.00270000000000000022111414100000000000000000000000000000000000007300000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................23125.00250212000000000030012100300000000000000000000000000000000000035200000000000000000
........................................................................................................TCTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................21124.002400000000000000013120022000000000000000000000000000000000000031000000000000000000
........................................................................................................TCTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................23116.00160000000000000010300102000000100000000000000000000000000000000800000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTCACAGTT..........................................................................................................................................................................................................................25115.00150010000000000010210102100000001000000000000000000010000000001300000000000000000
........................................................................................................TCTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................22113.00130000000000000010120002500000000000000000000000000000000000001100000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTA................................................................................................................................................................................................................................19212.002400000000000000011020020000000100000000000000000000000000000012500000000000000000
..............................................................................................................CACTGGGAGAATTCACA.............................................................................................................................................................................................................................17111.00110000000000000000000000000000000000000000000000000000000005600000000000000000000
...........................................................................................................TGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2117.0070000000000000010101002100000000000000000000000000000000000010000000000000000000
...........................................................................................................TGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................1817.0070010000000000001111000000000000000000000000000000000000000000200000000000000000
............................................................................................................GGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................1916.0060000000000000011012000100000000000000000000000000000000000000000000000000000000
................................................................................................................CTGGGAGAATTCACAG............................................................................................................................................................................................................................1616.0060000000000000000000000000000000000000000110000000000011000200000000000000000000
........................................................................................................TCTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................2016.0060000000000000010000000100000000000000000000000000000000000002200000000000000000
............................................................................................................GGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2015.0050000000000000000112000100000000000000000000000000000000000000000000000000000000
.........................................................................................................CTTGGCACTGGGAGAATTTT...............................................................................................................................................................................................................................2015.0050000000000000000000001000000000000000000000000000000000000003100000000000000000
...........................................................................................................TGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2015.0050010000000000000100001100000000000000000000000000000000000001000000000000000000
droGri2
T--------CTAGA-----AATGATCAACTCACTGAAAAATAT--TGT---------------------------------GGA--A-AGCTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATAT---AATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTGGACATAGAAACAACC---------------TG--AAAAACGCAA--CATATC-------A-----------------AATAATT--------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................CTTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2211443.001443431400
.........................................................................................................CTTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................201834.0083438796
.........................................................................................................CTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................231393.0039344349
.........................................................................................................CTTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................211239.0023936203
.........................................................................................................CTTGGCACTGGGAGAATTC................................................................................................................................................................................................................................19158.0058157
..........................................................................................................TTGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................19113.001358
..........................................................................................................TTGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................21112.001257
..........................................................................................................TTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2218.00871
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAACT................................................................................................................................................................................2217.00770
.........................................................................................................CTTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................2417.00716
.........................................................................................................CTTGGCACTGGGAGAATTCACT.............................................................................................................................................................................................................................2215.00514
..........................................................................................................TTGGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................2014.00431
.........................................................................................................CTTGGCACTGGGAGAATTCACAT............................................................................................................................................................................................................................2314.00404
.........................................................................................................CTTGGCACTGGGAGAATTCACG.............................................................................................................................................................................................................................2214.00404
.........................................................................................................CTTGGCACTGGGAGAATTT................................................................................................................................................................................................................................1913.00312
.........................................................................................................CTTGGCACTGGGAGAATTCACAA............................................................................................................................................................................................................................2313.00303
.........................................................................................................CTTGGCACTGGGAGAATTCACC.............................................................................................................................................................................................................................2212.00202
.........................................................................................................CTTGGCACTGGGAGAATTCACAC............................................................................................................................................................................................................................2312.00202
.........................................................................................................CTTGGCACTGGGAGAATTCAA..............................................................................................................................................................................................................................2112.00211
...........................................................................................................TGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2112.00220
.........................................................................................................CTTGGCACTGGGAGAATTCACAGA...........................................................................................................................................................................................................................2412.00202
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAC.................................................................................................................................................................................2111.00110
.........................................................................................................CTTGGCACTGGGAGAATTCACAAA...........................................................................................................................................................................................................................2411.00101
.....................................................................................................................................................GTGGTTCTGCGGGTGCC-AAACTT...............................................................................................................................................................................2311.00110
..........................................................................................................TTGGCACTGGGAGAATTC................................................................................................................................................................................................................................1811.00110
.........................................................................................................CTTGGCACTGGGAGAATTCC...............................................................................................................................................................................................................................2011.00101
..........................................................................................................TTGGCACTGGGAGAATTCACAGT...........................................................................................................................................................................................................................2311.00110
......................................................................................................................................................TGGTTCTGCGGGTGCC-AAACT................................................................................................................................................................................2111.00110
...........................................................................................................TGGCACTGGGAGAATTCACA.............................................................................................................................................................................................................................2011.00110
....................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAACT................................................................................................................................................................................2311.00110
........................................................................................................TCTTGGCACTGGGAGAATTCACAG............................................................................................................................................................................................................................2411.00110
............................................................................................................GGCACTGGGAGAATTCAC..............................................................................................................................................................................................................................1811.00110
...........................................................................................................TGGCACTGGGAGAATTCA...............................................................................................................................................................................................................................1811.00101

Generated: 10/20/2015 at 07:44 PM