ID:

dan-mir-13a

 Coordinate:

scaffold_13340:12827627-12827700 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.4 -38.2 -38.0

Flybase annnotation

pre_miRNA [Dana\mir-13a-RM]; utr3 [utr3_minus_7789]; miRNA [Dana\miR-13a-RA]

No Repeatable elements found

Sense Strand Reads

ACAAGTGTGCTACAAGAATCCCCTCAAAAAAGGACGATCCATCGAGTTCTTACGTAACTCCTCAAAGGGCTGTGAAATGTTGCCATTATCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAATCGTCAGAAAACCGTCAGAAAGGGGCGCGGCGGCAGGATGTCATAA

******************************************(((.((((((((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).)))))))))))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total V106

head

 M058

embryo

 V055

head

 V039

embryo

 V105

male body		 M044

female body
................................................................................................TATCACAGCCATTTTGATGAGTT....................................................... 23 0 1 22015.00 22015 9788 6675 4415 478 375 284
................................................................................................TATCACAGCCATTTTGATGAGT........................................................ 22 0 1 7585.00 7585 5419 558 1251 93 104 160
................................................................................................TATCACAGCCATTTTGATGAG......................................................... 21 0 1 713.00 713 593 15 74 2 9 20
................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................... 24 0 1 490.00 490 195 90 161 7 30 7
................................................................................................TATCACAGCCATTTTGATGAGTC....................................................... 23 1 1 461.00 461 3 451 6 0 1 0
................................................................................................TATCACATCCATTTTGATGAGTT....................................................... 23 1 1 302.00 302 277 1 15 6 3 0
................................................................................................TATTACAGCCATTTTGATGAGTT....................................................... 23 1 1 264.00 264 10 249 4 0 1 0
................................................................................................TGTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 206.00 206 1 202 2 1 0 0
................................................................................................TACCACAGCCATTTTGATGAGTT....................................................... 23 1 1 199.00 199 13 177 8 1 0 0
................................................................................................TATCACAGCCAGCTTGATGAGCT....................................................... 23 3 2 155.00 310 203 22 6 3 75 1
................................................................................................TATCACATCCATTTTGATGAGT........................................................ 22 1 1 153.00 153 150 0 1 0 1 1
................................................................................................TATCACAGCCATTTTGATGAGC........................................................ 22 1 1 134.00 134 11 114 9 0 0 0
................................................................................................TATCACAGACATTTTGATGAGTT....................................................... 23 1 1 125.00 125 83 13 17 2 2 8
...............................................................................................CTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 117.00 117 3 106 8 0 0 0
................................................................................................TAGCACAGCCATTTTGATGAGTT....................................................... 23 1 1 108.00 108 71 1 35 1 0 0
................................................................................................TATCACAGCCATTTTGAAGAGT........................................................ 22 1 3 98.67 296 257 1 21 7 9 1
.................................................................................................ATCACAGCCATTTTGATGAGTT....................................................... 22 0 1 98.00 98 7 57 0 0 1 33
................................................................................................TATCACAGCCATTTTGATTAGTT....................................................... 23 1 1 83.00 83 54 9 10 9 1 0
................................................................................................TATCACAGCCATTTTGATGATTT....................................................... 23 1 1 75.00 75 42 11 17 0 4 1
................................................................................................TATCACAGCCCTTTTGATGAGTT....................................................... 23 1 1 70.00 70 6 52 10 2 0 0
................................................................................................TATCACAGCCATTTTGCTGAGTT....................................................... 23 1 1 63.00 63 2 0 60 1 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................... 24 1 1 62.00 62 16 25 13 2 4 2
................................................................................................TATCACAGACATTTTGATGAGT........................................................ 22 1 1 61.00 61 47 0 10 0 0 4
................................................................................................TATCACAGCCATTTTGATTAGT........................................................ 22 1 1 59.00 59 47 0 7 5 0 0
................................................................................................TATCACAGCCATTTTTATGAGTT....................................................... 23 1 1 59.00 59 28 8 12 10 1 0
................................................................................................TATCACAGCCATTTTGATGAGCT....................................................... 23 1 1 58.00 58 22 11 20 5 0 0
....................................................................................................ACAGCCATTTTGATGAGTT....................................................... 19 0 1 57.00 57 7 8 40 2 0 0
................................................................................................TAGCACAGCCATTTTGATGAGT........................................................ 22 1 1 56.00 56 44 0 12 0 0 0
................................................................................................TATCACAGCCATTTTGATGA.......................................................... 20 0 1 52.00 52 27 15 4 0 1 5
................................................................................................TATCACAGCCATTTTGATGTGTT....................................................... 23 1 1 51.00 51 0 12 35 4 0 0
.........................................................CTCCTCAAAGGGCTGTGAAATG............................................................................................... 22 0 1 50.00 50 7 10 21 3 1 8
................................................................................................TATCACAGCCATTTTGATGACTT....................................................... 23 1 1 47.00 47 32 1 7 2 5 0
................................................................................................TTTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 46.00 46 1 42 3 0 0 0
................................................................................................TATCACAGCCATTTTGATG........................................................... 19 0 1 43.00 43 32 5 4 0 0 2
................................................................................................TATCACGGCCATTTTGATGAGTT....................................................... 23 1 1 41.00 41 21 8 12 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGCTT...................................................... 24 3 1 40.00 40 27 1 2 0 10 0
................................................................................................TATCACAGCCATTTTGATGCGTT....................................................... 23 1 1 39.00 39 1 0 36 2 0 0
................................................................................................TATCACAGCAATTTTGATGAGTT....................................................... 23 1 1 39.00 39 16 1 22 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 39.00 39 1 31 7 0 0 0
................................................................................................TATCACAGCCATTTTGATGAATT....................................................... 23 1 1 38.00 38 33 1 3 0 1 0
................................................................................................TATCACAGCCACTTTGATGAGTT....................................................... 23 1 1 36.00 36 20 8 5 2 1 0
................................................................................................CATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 34.00 34 8 23 1 1 0 1
................................................................................................TATCACAGCCAGCTTGATGAGC........................................................ 22 3 3 33.33 100 33 62 0 2 1 2
................................................................................................TATCGCAGCCATTTTGATGAGTT....................................................... 23 1 1 33.00 33 19 2 9 2 0 1
................................................................................................TATCACAGCCATTTTGATGGGTT....................................................... 23 1 1 32.00 32 13 6 10 1 1 1
................................................................................................TATCACAGCCATTTTGATGAAT........................................................ 22 1 1 30.00 30 27 0 2 0 1 0
................................................................................................TATCACAGCCATTTTGATGATT........................................................ 22 1 1 30.00 30 20 2 2 2 4 0
................................................................................................TATCACGGCCATTTTGATGAGT........................................................ 22 1 1 30.00 30 24 0 5 0 1 0
................................................................................................TATCACAGCCATTTTGGTGAGTT....................................................... 23 1 1 29.00 29 12 2 14 0 1 0
................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................... 24 1 1 28.00 28 21 0 7 0 0 0
..................................................................................................TCACAGCCATTTTGATGAGTT....................................................... 21 0 1 28.00 28 7 15 2 1 1 2
................................................................................................TATCACAGCCATTTTGATAAGTT....................................................... 23 1 1 26.00 26 14 8 4 0 0 0
................................................................................................TATCACAGCCATTTTGTTGAGTT....................................................... 23 1 1 26.00 26 5 1 19 1 0 0
................................................................................................TATTACAGCCATTTTGATGAGT........................................................ 22 1 1 26.00 26 7 17 1 0 1 0
................................................................................................TATCACAGCCAGCTTGATGAG......................................................... 21 2 1 26.00 26 17 4 0 0 2 3
................................................................................................AATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 26.00 26 2 17 7 0 0 0
................................................................................................TATCACAGCCATCTTGATGAGTT....................................................... 23 1 1 26.00 26 14 3 5 1 3 0
................................................................................................TGTCACAGCCATTTTGATGAGT........................................................ 22 1 1 26.00 26 2 22 2 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGTT....................................................... 23 1 1 25.00 25 1 0 22 0 2 0
................................................................................................TATCACACCCATTTTGATGAGTT....................................................... 23 1 1 24.00 24 11 2 6 3 2 0
....................................................................................................ACAGCCATTTTGATGAGT........................................................ 18 0 1 23.00 23 6 0 15 1 1 0
................................................................................................TATCACAGCCATTTTGAGGAGT........................................................ 22 1 3 22.33 67 50 4 11 2 0 0
................................................................................................TATCACAGCTATTTTGATGAGTT....................................................... 23 1 1 22.00 22 8 6 7 1 0 0
................................................................................................TATAACAGCCATTTTGATGAGTT....................................................... 23 1 1 21.00 21 12 0 8 0 1 0
................................................................................................TATCACAGCCATTTTGATCAGTT....................................................... 23 1 1 21.00 21 12 0 9 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGT........................................................ 22 1 1 21.00 21 7 14 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGT........................................................ 21 0 1 21.00 21 4 7 0 0 0 10
................................................................................................TATCACAGTCATTTTGATGAGTT....................................................... 23 1 1 20.00 20 7 2 5 1 0 5
................................................................................................TATCACAGCCGTTTTGATGAGTT....................................................... 23 1 1 19.00 19 9 3 5 0 2 0
................................................................................................TATCACAGCCATTTTGCTGAGT........................................................ 22 1 1 19.00 19 1 0 17 1 0 0
...................................................................................................CACAGCCATTTTGATGAGTT....................................................... 20 0 1 19.00 19 6 12 1 0 0 0
................................................................................................TATCACAGCCATTCTGATGAGTT....................................................... 23 1 1 19.00 19 7 0 9 0 3 0
................................................................................................TATCACAGCCATTTTTATGAGT........................................................ 22 1 1 19.00 19 12 0 6 1 0 0
................................................................................................TATCACAGCCATTTTGAAGAGTT....................................................... 23 1 3 18.67 56 26 7 11 4 8 0
................................................................................................TATCATAGCCATTTTGATGAGTT....................................................... 23 1 1 18.00 18 9 3 5 1 0 0
................................................................................................TATCACAACCATTTTGATGAGTT....................................................... 23 1 1 18.00 18 3 4 10 1 0 0
................................................................................................TATCACAGGCATTTTGATGAGTT....................................................... 23 1 1 18.00 18 0 1 3 0 0 14
................................................................................................TATCACAGCCATTTTGATGAGGT....................................................... 23 1 1 18.00 18 2 1 14 1 0 0
................................................................................................TATCACAGCCATTTTGATGAGTG....................................................... 23 1 1 18.00 18 7 7 3 1 0 0
................................................................................................TATCACAGCCATTTTGATGTGT........................................................ 22 1 1 18.00 18 3 0 14 0 1 0
................................................................................................TATCACAGCCATTTCGATGAGTT....................................................... 23 1 1 17.00 17 8 3 5 1 0 0
................................................................................................TATCACAGCAATTTTGATGAGT........................................................ 22 1 1 17.00 17 10 0 7 0 0 0
................................................................................................TATCACAGCCATTTTGATGAT......................................................... 21 1 1 17.00 17 17 0 0 0 0 0
................................................................................................TATCACATCCATTTTGATGAG......................................................... 21 1 1 17.00 17 17 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTC....................................................... 23 2 1 16.00 16 0 16 0 0 0 0
................................................................................................TATCTCAGCCATTTTGATGAGTT....................................................... 23 1 1 15.00 15 1 11 3 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTA....................................................... 23 1 1 15.00 15 9 1 3 1 0 1
................................................................................................TATCACAGCCATTTTGGTGAGT........................................................ 22 1 1 15.00 15 8 1 4 1 1 0
................................................................................................TATCAAAGCCATTTTGATGAGTT....................................................... 23 1 1 15.00 15 6 0 9 0 0 0
................................................................................................TATCACAGCCACTTTGATGAGT........................................................ 22 1 1 15.00 15 13 1 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGCGT........................................................ 22 1 1 14.00 14 2 0 11 1 0 0
................................................................................................TATCGCAGCCATTTTGATGAGT........................................................ 22 1 1 13.00 13 9 0 3 0 0 1
................................................................................................TATCACAGCCATTTTCATGAGTT....................................................... 23 1 1 13.00 13 2 0 8 2 1 0
...............................................................................................CGATCACAGCCATTTTGATGAGTT....................................................... 24 2 1 13.00 13 0 13 0 0 0 0
................................................................................................TATAACAGCCATTTTGATGAGT........................................................ 22 1 1 13.00 13 10 0 3 0 0 0
................................................................................................TATCACAGCCATTGTGATGAGTT....................................................... 23 1 1 13.00 13 1 0 9 0 3 0
................................................................................................TAACACAGCCATTTTGATGAGTT....................................................... 23 1 1 13.00 13 1 2 10 0 0 0
................................................................................................TATCACAGCCATTTTAATGAGTT....................................................... 23 1 1 13.00 13 2 6 3 1 1 0
................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................... 25 2 1 13.00 13 3 9 0 0 0 1
................................................................................................TATCACAGCCATTTTGATGACT........................................................ 22 1 1 12.00 12 10 0 0 0 2 0
................................................................................................TATTACAGCCATTTTGATGAGTC....................................................... 23 2 1 12.00 12 0 12 0 0 0 0
................................................................................................TATCACAGCCATTTTGACGAGTTAC..................................................... 25 2 3 11.67 35 0 26 1 5 2 1
................................................................................................TATCACAGCCATTTTGATCAGT........................................................ 22 1 1 11.00 11 8 0 1 1 1 0
................................................................................................TATCAGAGCCATTTTGATGAGTT....................................................... 23 1 1 11.00 11 0 5 5 1 0 0
................................................................................................TATCACAGCCATTTTGATGAGAT....................................................... 23 1 1 11.00 11 0 5 5 1 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................... 24 1 1 11.00 11 5 2 3 0 0 1
................................................................................................TATCACCGCCATTTTGATGAGTT....................................................... 23 1 1 11.00 11 5 0 5 1 0 0
................................................................................................TACCACAGCCATTTTGATGAGTC....................................................... 23 2 1 11.00 11 0 11 0 0 0 0
................................................................................................TATCACAGCCATCTTGATGAGT........................................................ 22 1 1 11.00 11 8 0 2 1 0 0
................................................................................................TATCACAGCCCTTTTGATGAGT........................................................ 22 1 1 10.00 10 3 3 4 0 0 0
.................................................................................................AGCACAGCCATTTTGATGAGTT....................................................... 22 1 1 10.00 10 0 10 0 0 0 0
................................................................................................TATCACAGCCATTTCGATGAGT........................................................ 22 1 1 10.00 10 8 0 1 0 1 0
................................................................................................TATCACAGCCAGTTTGATGAGT........................................................ 22 1 1 10.00 10 0 0 10 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGA........................................................ 22 1 1 10.00 10 8 0 1 1 0 0
................................................................................................TATCACACCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 3 0 3 1 1 2
................................................................................................TATCATAGCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 9 0 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGGGT........................................................ 22 1 1 10.00 10 8 0 2 0 0 0
................................................................................................TATCACATCCATTTTGATTAGTT....................................................... 23 2 1 9.00 9 7 0 2 0 0 0
..................................................................................................TCACAGCCATTTTGATGAGT........................................................ 20 0 1 9.00 9 7 2 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGTC....................................................... 24 2 1 9.00 9 0 9 0 0 0 0
................................................................................................TATCACAGCCATTTTAATGAGT........................................................ 22 1 1 9.00 9 3 1 5 0 0 0
................................................................................................TATCACAGCCATGTTGATGAGTT....................................................... 23 1 1 9.00 9 0 0 7 0 2 0
...............................................................................................CTATCACAGCCATTTTGATGAGT........................................................ 23 1 1 9.00 9 1 6 2 0 0 0
................................................................................................TATCACAGCCATTTTGATTAG......................................................... 21 1 1 9.00 9 8 0 1 0 0 0
................................................................................................TATCACAGTCATTTTGATGAGT........................................................ 22 1 1 9.00 9 6 1 1 0 0 1
................................................................................................TATCACAGCCATTTTGAGGAGTT....................................................... 23 1 3 9.00 27 5 11 8 0 2 1
..................................................................................................TCACAGCCAGCTTGATGAGCTT...................................................... 22 3 5 8.20 41 32 0 0 0 9 0
................................................................................................TGTCACAGCCATTTTGATGAGC........................................................ 22 2 1 8.00 8 0 7 1 0 0 0
................................................................................................TATCACATCCATTTTGATGAGTTT...................................................... 24 1 1 8.00 8 8 0 0 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGT........................................................ 22 1 1 8.00 8 6 1 1 0 0 0
................................................................................................TACTACAGCCATTTTGATGAGTT....................................................... 23 2 1 8.00 8 0 8 0 0 0 0
................................................................................................TATGACAGCCATTTTGATGAGTT....................................................... 23 1 1 8.00 8 2 1 3 1 1 0
................................................................................................TATCACAGCCATTTTGATGAGG........................................................ 22 1 1 7.00 7 5 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGTTGAGT........................................................ 22 1 1 7.00 7 0 0 7 0 0 0
................................................................................................TATCACATCCATTTTGATTAGT........................................................ 22 2 1 7.00 7 7 0 0 0 0 0
..................................................................................................TCACAGCCAGCTTGATGAG......................................................... 19 2 4 7.00 28 26 0 1 0 1 0
................................................................................................TATCACAGGCATTTTGATGAGT........................................................ 22 1 1 7.00 7 1 0 2 0 0 4
................................................................................................TATCACAGCCATTTTGATAAGT........................................................ 22 1 1 7.00 7 6 0 1 0 0 0
................................................................................................TATCACAGCCTTTTTGATGAGTT....................................................... 23 1 1 7.00 7 2 0 4 0 1 0
................................................................................................TCTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 7.00 7 1 1 4 0 1 0
..................................................................................................TCACAGCCATCTTGATGAGCT....................................................... 21 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TATCACATCCATTTTTATGAGTT....................................................... 23 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGAGGAG......................................................... 21 2 3 6.33 19 16 0 0 0 0 3
................................................................................................TAGCACAGCCATTTTGATGAGTG....................................................... 23 2 1 6.00 6 6 0 0 0 0 0
..........................................................TCCTCAAAGGGCTGTGAAATG............................................................................................... 21 0 1 6.00 6 0 0 3 0 0 3
................................................................................................TGTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 6.00 6 0 6 0 0 0 0
.........................................................CTCCTCAAAGGGCTGTGA................................................................................................... 18 0 1 6.00 6 1 0 4 0 0 1
................................................................................................TATCCCAGCCATTTTGATGAGTT....................................................... 23 1 1 6.00 6 4 0 2 0 0 0
................................................................................................TATCACAACCATTTTGATGAGT........................................................ 22 1 1 6.00 6 0 2 4 0 0 0
................................................................................................TAGCACAGCCATTTTGATGAG......................................................... 21 1 1 6.00 6 6 0 0 0 0 0
.........................................................CTCCTCAAAGGGCTGTGAA.................................................................................................. 19 0 1 6.00 6 0 0 4 1 1 0
................................................................................................TATCACTGCCATTTTGATGAGT........................................................ 22 1 1 6.00 6 5 0 1 0 0 0
...................................................................................................CACAGCCATTTTGATGAGT........................................................ 19 0 1 6.00 6 4 1 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGT.......................................................... 20 1 1 6.00 6 5 0 1 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGA........................................................ 22 3 1 6.00 6 2 3 0 1 0 0
................................................................................................TATCACAGCGATTTTGATGAGTT....................................................... 23 1 1 6.00 6 3 0 3 0 0 0
................................................................................................TATCACAGCCATTATGATGAGTT....................................................... 23 1 1 6.00 6 2 0 0 0 4 0
................................................................................................TATCACAGCCATTTTGCTGCGTT....................................................... 23 2 1 6.00 6 0 0 6 0 0 0
................................................................................................TATCACAGCCATTTTGAAGAG......................................................... 21 1 3 5.33 16 14 0 0 2 0 0
..................................................................................................TCACAGCCATCTTGATGAGCTA...................................................... 22 3 1 5.00 5 5 0 0 0 0 0
.........................................................CTCCTCAAAGGGCTGTGAAAT................................................................................................ 21 0 1 5.00 5 0 3 0 1 0 1
................................................................................................TATCACAGCCATTTTGATGAGCTT...................................................... 24 1 1 5.00 5 3 1 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGATCT....................................................... 23 2 1 5.00 5 0 1 2 2 0 0
................................................................................................TATCACAGCCATTTTGATGAA......................................................... 21 1 1 5.00 5 4 0 0 0 0 1
................................................................................................GATCACAGCCATTTTGATGAGT........................................................ 22 1 1 5.00 5 1 3 1 0 0 0
................................................................................................TCTCACAGCCATTTTGATGAGT........................................................ 22 1 1 5.00 5 3 0 2 0 0 0
................................................................................................TATCACAGCCAATTTGATGAGTT....................................................... 23 1 1 5.00 5 3 0 0 0 2 0
................................................................................................TATCACAGCCAGCTTGATGA.......................................................... 20 2 2 4.50 9 2 2 0 0 0 5
................................................................................................TATCACAGCCGTTTTGATGAGT........................................................ 22 1 1 4.00 4 1 0 2 0 1 0
................................................................................................TATCACAGCCATTTTGCTGAGCT....................................................... 23 2 1 4.00 4 0 0 4 0 0 0
................................................................................................TATCACAGCCATTTTGATGCTTT....................................................... 23 2 1 4.00 4 0 0 3 1 0 0
................................................................................................TATCACAGCTATTTTGATGAG......................................................... 21 1 1 4.00 4 3 0 1 0 0 0
................................................................................................TATCACAGACATTTTGATGAGTTT...................................................... 24 1 1 4.00 4 1 0 2 0 0 1
..............................................................................................TCTATCACAGCCATTTTGATGAGTT....................................................... 25 2 1 4.00 4 0 4 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAG......................................................... 21 1 1 4.00 4 1 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGAAGT.......................................................... 20 2 3 4.00 12 11 0 0 0 1 0
..................................................................................................TATCAGCCATTTTGATGAGTT....................................................... 21 2 2 4.00 8 6 1 0 0 0 1
................................................................................................TAGCACAGCCATTTTCATGAGTT....................................................... 23 2 1 4.00 4 0 0 4 0 0 0
................................................................................................TATCACAGCCATTTTGATCAG......................................................... 21 1 1 4.00 4 2 0 1 1 0 0
................................................................................................TATCACAGCCATTTTGCTGCGT........................................................ 22 2 1 4.00 4 0 0 4 0 0 0
................................................................................................TATCACAGCCGTTTTGTTGAGTT....................................................... 23 2 1 4.00 4 0 0 4 0 0 0
................................................................................................TATCACAGCTATTTTGATGAGT........................................................ 22 1 1 4.00 4 4 0 0 0 0 0
................................................................................................TATCACAGTCATTTTGGTGAGTT....................................................... 23 2 1 4.00 4 0 0 4 0 0 0
................................................................................................TATCAGAGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 2 1 1 0 0 0
................................................................................................TATCACAGCCCTTTTGATGATTT....................................................... 23 2 1 4.00 4 0 3 1 0 0 0
................................................................................................TATCACAGCCATTTTGAT............................................................ 18 0 1 4.00 4 2 1 0 0 0 1
.....................................................................................................CAGCCATTTTGATGAGTT....................................................... 18 0 1 4.00 4 0 4 0 0 0 0
................................................................................................TATCAAAGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 2 0 2 0 0 0
................................................................................................TATCACAGCGATTTTGATGAGT........................................................ 22 1 1 4.00 4 2 0 2 0 0 0
.........................................................CTCCTCAAAGGGCTGTGAAA................................................................................................. 20 0 1 4.00 4 1 1 2 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................... 23 0 1 4.00 4 2 1 0 0 0 1
................................................................................................TTTCACAGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 0 3 0 0 1 0
................................................................................................TATCACAGACATTTTGATGAG......................................................... 21 1 1 4.00 4 3 1 0 0 0 0
................................................................................................AATCACAGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 1 1 2 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 4.00 4 0 4 0 0 0 0
................................................................................................TATCACAGCCATTTTTATTAGTT....................................................... 23 2 1 4.00 4 0 0 2 2 0 0
................................................................................................TAGCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 4.00 4 2 0 2 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 4.00 4 0 4 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................... 25 1 1 4.00 4 1 0 2 0 1 0
................................................................................................TATCACAGCCATTTTCATGAGT........................................................ 22 1 1 4.00 4 0 0 4 0 0 0
................................................................................................TAGCACATCCATTTTGATGAGT........................................................ 22 2 1 3.00 3 3 0 0 0 0 0
................................................................................................TAACACAGCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 1 0 2 0 0 0
................................................................................................TATCACAGCCAGTTTGAGGAG......................................................... 21 2 4 3.00 12 7 0 1 0 4 0
................................................................................................TATCACAGCCAGTTTGATGAGCT....................................................... 23 2 1 3.00 3 1 1 0 0 1 0
................................................................................................TATCACATCCATTTTGATGCGTT....................................................... 23 2 1 3.00 3 1 0 0 2 0 0
................................................................................................TATCACAGCCATTTTTATGCGTT....................................................... 23 2 1 3.00 3 0 0 1 2 0 0
................................................................................................TATCACAGCCATTTTGTTGCGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0
................................................................................................TACCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGAGT........................................................... 19 2 4 3.00 12 12 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................... 26 3 1 3.00 3 0 3 0 0 0 0
................................................................................................TATCACGGCCATTTTGATGAG......................................................... 21 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGTTT...................................................... 24 1 1 3.00 3 2 0 1 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGTTT...................................................... 24 1 1 3.00 3 2 1 0 0 0 0
................................................................................................TAGCACAGACAGTTTGATGAGTT....................................................... 23 3 1 3.00 3 0 0 3 0 0 0
................................................................................................TATCACAGCCATTCTGATGAGT........................................................ 22 1 1 3.00 3 1 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCC....................................................... 23 2 1 3.00 3 0 3 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGC........................................................ 22 2 1 3.00 3 0 3 0 0 0 0
................................................................................................TATCAGAGCCATTTTGTTGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGTTT...................................................... 25 1 1 3.00 3 0 3 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 3.00 3 0 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGAAGAGC........................................................ 22 2 3 3.00 9 0 1 7 1 0 0
...............................................................................................ATATCACAGCCATTTTGATGAGTT....................................................... 24 0 1 3.00 3 0 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTTG..................................................... 25 1 3 3.00 9 7 0 2 0 0 0
................................................................................................TATCACAGCCAGCTTGAGGAGT........................................................ 22 3 4 3.00 12 5 0 1 0 4 2
................................................................................................TATCACAGCCAGGTTGATGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGAT....................................................... 23 3 1 3.00 3 3 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGCTGAGTT....................................................... 23 2 1 3.00 3 0 0 2 1 0 0
................................................................................................TATCACCGCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 0 0 2 1 0 0
................................................................................................TAGCACATCCATTTTGATGAGTT....................................................... 23 2 1 3.00 3 3 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGATGAGCT....................................................... 23 2 1 3.00 3 1 0 1 0 1 0
................................................................................................TAGCACAGCCATTGTGATGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGAC....................................................... 23 2 1 3.00 3 0 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAC......................................................... 21 1 1 3.00 3 1 2 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCA....................................................... 23 2 1 3.00 3 2 1 0 0 0 0
................................................................................................TAGCACAGTCATTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0
................................................................................................TATCACAGCCATCTTGATGAG......................................................... 21 1 1 3.00 3 2 0 1 0 0 0
................................................................................................TATCACAGACATTTTGGTGAGTT....................................................... 23 2 1 3.00 3 2 0 1 0 0 0
................................................................................................TATCACAGCCATATTGATGAGTT....................................................... 23 1 1 3.00 3 1 0 1 0 1 0
................................................................................................TATCACAGCCATTTTGACGAGTTTC..................................................... 25 1 3 2.67 8 1 2 0 0 3 2
..................................................................................................TCACAGCCACTTTGATGAGCTA...................................................... 22 3 3 2.67 8 7 0 0 0 1 0
................................................................................................TATCACAGCCATTTTGACGAGTTACA.................................................... 26 3 3 2.67 8 0 3 0 5 0 0
..................................................................................................TATCAGCCATTTTGATGAGT........................................................ 20 2 2 2.50 5 5 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGAAGAGTTT...................................................... 24 1 3 2.33 7 3 0 1 0 3 0
................................................................................................TATCACAGCCGCTTTGAGGAG......................................................... 21 3 4 2.25 9 7 0 0 0 1 1
................................................................................................TATCACAGCCAGCTTGATG........................................................... 19 2 4 2.25 9 8 0 0 0 0 1
................................................................................................TATCACAGCCATTTTGATGACTTT...................................................... 24 1 1 2.00 2 1 0 0 0 1 0
................................................................................................TATCACAGCCATTTTACTGAGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTCATGAGCT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTTCTGAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
..............................................................................................AATATCACAGCCATTTTGATGAGT........................................................ 24 1 1 2.00 2 2 0 0 0 0 0
................................................................................................TATCACAGCCATTTTTTTGAGTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...............................................................................................CTATCACAGACATTTTGATGAGTT....................................................... 24 2 1 2.00 2 1 1 0 0 0 0
.................................................................................................TACACAGCCATTTTGATGAGTT....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGGGTTT...................................................... 24 1 1 2.00 2 1 0 1 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGTC....................................................... 23 2 1 2.00 2 0 2 0 0 0 0
................................................................................................TATCACATCCATTTTGGTGAGTT....................................................... 23 2 1 2.00 2 1 0 1 0 0 0
................................................................................................TACCACATCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGTTGGGTTT...................................................... 24 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGACAGTTTGATGAGTT....................................................... 23 2 1 2.00 2 1 0 1 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGC........................................................ 22 2 1 2.00 2 0 1 1 0 0 0
................................................................................................TATCACAGCCCTTTTGATTCGTT....................................................... 23 3 1 2.00 2 0 0 1 1 0 0
................................................................................................TAGCACAGCCGTTTTGATGAGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGCTGAGTC....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TCTCACATCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 1 0 1 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGC........................................................ 23 2 1 2.00 2 0 2 0 0 0 0
................................................................................................TATCACAGCCATTTTGTTGCGT........................................................ 22 2 1 2.00 2 0 0 1 1 0 0
................................................................................................TAGCACAGCCATTTTGATGATTT....................................................... 23 2 1 2.00 2 0 0 1 1 0 0
.................................................................................................ATAACAGCCATTTTGATGAGTT....................................................... 22 1 1 2.00 2 0 2 0 0 0 0
................................................................................................TATCAGAGCCATTTTGCTGAGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAAATG............................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0
...............................................................................................CTATCACAGCCATTTTGATGAG......................................................... 22 1 1 2.00 2 1 1 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGCGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACTGCCATTTTGATGTGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCAATCTGATGAGTT....................................................... 23 2 1 2.00 2 0 0 0 2 0 0
................................................................................................TATCACAGCCATTTTGCTGATTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGCTTAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TAGCACAGCCATTTTGATGAGGT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGATGATC........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
....................................................................................................ACAGCCATTTTGATGTGTT....................................................... 19 1 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGATCAGCT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGGTGCGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAACCATTTTGATGAGAT....................................................... 23 2 1 2.00 2 0 1 0 1 0 0
..................................................................................................TCACAGCCATTTTGATGAGTC....................................................... 21 1 1 2.00 2 0 2 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAG......................................................... 21 1 1 2.00 2 0 0 2 0 0 0
................................................................................................TAGCACGGCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGTGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGGCATTTTGATGAGTTT...................................................... 24 1 1 2.00 2 0 0 0 0 0 2
................................................................................................TAGCACAGCCAGTTTGATGAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTGTGTTGAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCCCAGCCATTTTGATGAGT........................................................ 22 1 1 2.00 2 1 0 1 0 0 0
................................................................................................TATCACAGCCATTTAAATGAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCCTTTTGATGATT........................................................ 22 2 1 2.00 2 0 1 1 0 0 0
................................................................................................TATCACAGCCATTTGGATGAGT........................................................ 22 1 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAACCATTTTTATGAGTT....................................................... 23 2 1 2.00 2 0 0 1 1 0 0
................................................................................................TATCACAGCCAGTTTGCTGAGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGTCATTTTGATTAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................AATCACAGCCATTTTGTTGAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGCTGAGTTT...................................................... 24 1 1 2.00 2 0 0 2 0 0 0
................................................................................................AATCACAGCCATTTTGCTGAGT........................................................ 22 2 1 2.00 2 0 0 1 1 0 0
................................................................................................TAACACAGCCATTTTGATGTGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0
................................................................................................TATCACAGCCAGTTTGCTGAGTT....................................................... 23 2 1 2.00 2 0 0 2 0 0 0

Anti-sense strand reads

TGTTCACACGATGTTCTTAGGGGAGTTTTTTCCTGCTAGGTAGCTCAAGAATGCATTGAGGAGTTTCCCGACACTTTACAACGGTAATAGATGAGTATAGTGTCGGTAAAACTACTCAAAGCACCCTTAGCAGTCTTTTGGCAGTCTTTCCCCGCGCCGCCGTCCTACAGTATT

****************************************(((.((((((((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).)))))))))))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total V106

head

 M058

embryo

 V105

male body		 M044

female body

 V055

head

 V039

embryo
........................................................TGAGCAGTTTACCGACACTAT................................................................................................. 21 3 2 217.00 434 399 15 7 3 7 3
.......................................................TTGAGCAGTTTACCGACACTAT................................................................................................. 22 3 1 53.00 53 21 16 11 4 1 0
.........................................................GAGGAGTTTCCCGACACTAT................................................................................................. 20 1 1 15.00 15 13 0 2 0 0 0
......................................................ATCGAGTAGTTTCCCGACACT................................................................................................... 21 2 1 10.00 10 6 0 4 0 0 0
........................................................CGAGGAGTTTCCCGACACTAT................................................................................................. 21 2 1 9.00 9 2 3 4 0 0 0
......................................................ATTGAGCAGTTTACCGACACTAT................................................................................................. 23 3 1 8.00 8 1 7 0 0 0 0
.......................................................TCGAGTAGTTTCCCGACACTAT................................................................................................. 22 3 1 7.00 7 7 0 0 0 0 0
.......................................................TTGAGTAGTTTACCGACACTAT................................................................................................. 22 3 2 5.50 11 10 1 0 0 0 0
.......................................................GCGAGGAGTTTCCCGACACTAT................................................................................................. 22 3 1 5.00 5 3 0 1 1 0 0
.........................................................GAGCAGTTTACCGACACTAT................................................................................................. 20 3 11 2.27 25 24 0 0 1 0 0
........................................................AGAGTAGTTTCCCGACACTAT................................................................................................. 21 3 1 2.00 2 0 2 0 0 0 0
.......................................................TCGAGTAGTTTCCCGACACT................................................................................................... 20 2 1 2.00 2 1 0 1 0 0 0
........................................................TGAGCAGTTTCCCGACACTAT................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................GCGCCGCCGTTCAACGGTAT. 20 3 13 1.23 16 0 16 0 0 0 0
......................................................TTCGAGGAGTTTCCCGACACTAT................................................................................................. 23 3 1 1.00 1 0 0 1 0 0 0
...................................CTAGGTAGCTCAAGAATGTATT..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
........................................................CGAGTAGTTTCCCGACACTAT................................................................................................. 21 3 2 1.00 2 1 1 0 0 0 0
.........................................................GAGGAGTTTCCCGGCACTAT................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
........................................................TGAGGAGTTTCCCGACACTAT................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
........................................................TGAGCAGTTTCCCGACACTTT................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0
......................................................TTTGAGGAGTTTCCCGACACTAT................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
........................................................CGAGTAGTTTCCCGACACT................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0
.......................................................TCGAGTAGTTTCCCGACACTA.................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0
.........................................................GAGTAGTTTCCCGACACTA.................................................................................................. 19 2 2 0.50 1 0 0 0 1 0 0
......................................................TTCGAGTAGTTTCCCGACACT................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................................CGGGCCGCGGTCCTACAGTAG. 21 3 4 0.25 1 0 1 0 0 0 0
......................................................ATCTAGTAGTTTCCCGACACT................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
.........................................................TAGGATTTTCCCGACACTAT................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0
........................................................CGAGGAGTTTACCGACACTAT................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0
........................................TAGTTCAAGAAACCATTGAG.................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0
...................................................TCTATTGAGGAGGTTCCCGA....................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0
...................................................TCTATTGAGGAGTGTCCCG........................................................................................................ 19 3 10 0.10 1 0 0 1 0 0 0
.............................................CAAAAAGGCATTGAGGACTT............................................................................................................. 20 3 11 0.09 1 0 1 0 0 0 0
..................................................................................................................CTCAAAGAACCCTTACCAGC........................................ 20 3 12 0.08 1 0 1 0 0 0 0
.......................................................TCGAGTAGTTTTCCGACACT................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
.............................................................................................................AACTACTCAAACCAACCTTAA............................................ 21 3 16 0.06 1 0 0 0 1 0 0
....................................................CTATTGAGGAGTGTCCCG........................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13340:12827577-12827750 - dan-mir-13a Known_mirbase ACAAGTGTGCTAC----AAG---AATCCCCTC------AA-AA--AAGG--ACGATCCATCG-AGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TC-GT---CAG---A----------AAACCGTCA--------------GAAAGGGGCGCGGCGGCA---------------GGA-----------TGTCATAA--
droBip1 scf7180000396691:1710474-1710639 - ACAAGTGTTCTCGA----AGC------CCCCCTA----ACCCG--A------AGATCCATCC-AGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-C----CAAA-------------AAATCG-CA-----TCGT---------GGGGCGCGGCAGG----------------CGA-----------TTTCGTAA--
droKik1 scf7180000302639:1443188-1443331 + ACAAGTGTTTGTGATCCAAGA------------------------------------TGTCT-GATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT-T----CGGCAGCCAGAAG----G--------------------------------A-GTA----------------CCG-------------CTTCGCAAAT
droFic1 scf7180000452523:592237-592378 - ACAAGTGTTCGTGATCCCATA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCA-------------------------------------A-ATA----------------TCAAT-----------TTCCATAA--
droEle1 scf7180000491080:1007094-1007238 - ACAAGTGTTCGTGATCCGACA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CAGCAACTGGATA-------------------------------------G-ACA-----------------------TAAATCAGTTTTTATAA--
droRho1 scf7180000779250:92643-92790 + ACAAGTGTTCGTGATATATATGT---------CGG-A----------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCT-------------------------------------A-AAA----------------TCAAG-----------TTTCATAA--
droBia1 scf7180000302136:835520-835661 - ACAAGTGTTCGTGATCCAACA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCCGGTCA-------------------------------------A-AAA----------------TCGCA-----------TTTCGCAA--
droTak1 scf7180000415769:1925958-1926101 + ACAAGTGTTCGTGATCCAACA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCACT-----------------------------------A-AAA----------------TCATA-----------TTTCGTGA--
droEug1 scf7180000409281:109519-109662 + ACAAGTGTTCGTGATCCGATA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT-T----CGGCATCTGGTCAAA------------------------------------GTTA----------------TTATA-----------TTTCATAA--
dm3 chr3R:11243227-11243368 - dme-mir-13a Known_mirbase ACAAGTGTTTGTGATCCAAGC--------------------------------------CAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-G----CGGCAGCGGATCA-------------------------------------A-AAA----------------ACATA-----------TTTCATAA--
droSim2 3r:9985591-9985732 + dsi-mir-13a Known_mirbase ACAAGTGTTCGTGATCCAAGC--------------------------------------CAT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAGCGGATCG-------------------------------------A-AAA----------------ACATA-----------TTTCATAA--
droSec2 scaffold_0:10705038-10705179 + dse-mir-13a Known_mirbase ACAAGTGTTCGTGATCCAAGC--------------------------------------CAT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----GGTCAGCGGATCG-------------------------------------A-AAA----------------ACATA-----------TTTCATAA--
droYak3 3R:15188562-15188711 + dya-mir-13a Known_mirbase ACAAGTGTTCGTGATCCAAGC--------------------------------------CAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAACTTATTT-------------------CAT---------GTATT-T-CAA----------------ACATA-----------TTTCATAA--
droEre2 scaffold_4770:10769366-10769508 - der-mir-13a Known_mirbase ACAAGTGTTCGTGATCCAAGA--------------------------------------CAC-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----AAAAAGCGGGTTA-------------------------------------AGAAA----------------ACATA-----------TTTCAAAA--
dp5 2:9824883-9825066 + dps-mir-13a Known_mirbase ACAAGTGTTCGGCTCGTACTTTT---------TGG-ACAAAAAAAAAAA--ACCGTCAGCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC---CAG---C----------AATCCATCA-TC-----------GATCGGGGCAGGGCAGGA------------------TGGA-------GCACAGAG--
droPer2 scaffold_0:10660029-10660210 - dpe-mir-13a Known_mirbase ACAAGTGTTCGGCTCGTACTATT---------TGG-ACAAAAA--AAAA--ACCGTCATCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC---CAG---C----------AATCCATCA-TC-----------GATCGGGGCAGGGCAGGA------------------TGGA-------GCACAGAG--
droWil2 scf2_1100000004902:2143168-2143343 - dwi-mir-13a Known_mirbase ACAAGTGTTTTTT----TGG---AATCCGTTCCG--GCAAAAG-----------A----TGGAATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT-C----CTGCAACAGT--------------AT-TC-----------G---------A-AATGGATGGTATCCTTAGA--ATA-------------TGTGAA--
droVir3 scaffold_13047:13335591-13335765 + dvi-mir-13a Known_mirbase ATAGATAACGTCGCTTCGATA------------------CGTA--AAGA--CCAACCCACTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-G----CTTA-------------AATTCATTG-CC-CTCGTCGGCAGAATG----------GGC------------------TGGC----AAGGACGATTA--
droMoj3 scaffold_6540:10568297-10568492 + dmo-mir-13a Known_mirbase ACAAGTGTTTGCATCTCATTATA---------TGGGACACTTA--ACGATCTCCGCCCATTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TT-GCTTTCAGCA-------------TT-----GTCC-----------C----------ATCCGTTTTGTGTCACTGGA--TTATCCACCTCAATCTCCATCT--
droGri2 scaffold_14906:4357627-4357804 - dgr-mir-13a Known_mirbase GCATACATCTGCA---------------------G-ACTGTGA--GCGAACCAAGCCCACCC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-GCTTTCA--------TCACAGTGAT-CATTG-TCCCTCGC-------------CGGGGCCGGT------------------TCGT--GC---AGTCGCCG--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACAAGTGTGCTAC----AAG---AATCCCCTC------AA-AA--AAGG--ACGATCCATCG-AGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TC-GT---CAG---A----------AAACCGTCA--------------GAAAGGGGCGCGGCGGCA---------------GGA-----------TGTCATAA--SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23122015.0022015284667547844153759788
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................2217585.0075851605589312511045419
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................211713.0071320152749593
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................241490.00490790716130195
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................231461.0046104510613
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................221134.00134011409011
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................22198.009833570017
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................24162.0062225213416
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................19157.00570824007
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20152.005251504127
............................................................................CTCCTCAAAG-GGCTGTGAAATG................................................................................................................................................................22150.005081032117
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19143.00432504032
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................24128.00280007021
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21128.00282151217
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18123.00230011516
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21121.00211070004
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20119.00190120106
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................23118.0018071307
........................................................................................................................TATCACAGCCATTTTGATGAT......................................................................................................................21117.00170000017
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23115.0015111309
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................25113.0013190003
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................24111.0011120305
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22110.0010001108
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2019.009020007
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................2217.007000205
.............................................................................TCCTCAAAG-GGCTGTGAAATG................................................................................................................................................................2116.006300300
............................................................................CTCCTCAAAG-GGCTGTGA....................................................................................................................................................................1816.006100401
............................................................................CTCCTCAAAG-GGCTGTGAA...................................................................................................................................................................1916.006001410
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................1916.006010104
........................................................................................................................TATCACAGCCATTTTGATGT.......................................................................................................................2016.006000105
............................................................................CTCCTCAAAG-GGCTGTGAAAT.................................................................................................................................................................2115.005131000
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................2115.005100004
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................1814.004110002
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................1814.004040000
............................................................................CTCCTCAAAG-GGCTGTGAAA..................................................................................................................................................................2014.004010201
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2314.004110002
........................................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................................................................................2514.004000211
........................................................................................................................TATCACAGCCATTTTGAGT........................................................................................................................1943.00120000012
........................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................................................................................2613.003030000
........................................................................................................................TATCACAGCCATTTTGATGAGCC....................................................................................................................2313.003030000
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2413.003030000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTG..................................................................................................................2533.009000207
........................................................................................................................TATCACAGCCATTTTGATGAGAC....................................................................................................................2313.003030000
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................2113.003020001
........................................................................................................................TATCACAGCCATTTTGATGAGCA....................................................................................................................2313.003010002
........................................................................................................................TATCACAGCCATTTTGATGATC.....................................................................................................................2212.002000200
..........................................................................................................................TCACAGCCATTTTGATGAGTC....................................................................................................................2112.002020000
droBip1
ACAAGTGTTCTCGA----AGC------CCCCCTA----ACCCG--A------AGATCCATCC-AGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-C----CAAA-------------AAATCG-CA-----TCGT---------GGGGCGCGGCAGG----------------CGA-----------TTTCGTAA--SizeHit CountTotal NormTotal
No Reads
droKik1
ACAAGTGTTTGTGATCCAAGA------------------------------------TGTCT-GATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT-T----CGGCAGCCAGAAG----G--------------------------------A-GTA----------------CCG-------------CTTCGCAAATSizeHit CountTotal NormTotal
No Reads
droFic1
ACAAGTGTTCGTGATCCCATA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCA-------------------------------------A-ATA----------------TCAAT-----------TTCCATAA--SizeHit CountTotal NormTotal
No Reads
droEle1
ACAAGTGTTCGTGATCCGACA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CAGCAACTGGATA-------------------------------------G-ACA-----------------------TAAATCAGTTTTTATAA--SizeHit CountTotal NormTotal
No Reads
droRho1
ACAAGTGTTCGTGATATATATGT---------CGG-A----------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCT-------------------------------------A-AAA----------------TCAAG-----------TTTCATAA--SizeHit CountTotal NormTotal
No Reads
droBia1
ACAAGTGTTCGTGATCCAACA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCCGGTCA-------------------------------------A-AAA----------------TCGCA-----------TTTCGCAA--SizeHit CountTotal NormTotal
No Reads
droTak1
ACAAGTGTTCGTGATCCAACA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----CGGCAGCTGGGCACT-----------------------------------A-AAA----------------TCATA-----------TTTCGTGA--SizeHit CountTotal NormTotal
No Reads
droEug1
ACAAGTGTTCGTGATCCGATA--------------------------------------TAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT-T----CGGCATCTGGTCAAA------------------------------------GTTA----------------TTATA-----------TTTCATAA--SizeHit CountTotal NormTotal
No Reads
dm3
ACAAGTGTTTGTGATCCAAGC--------------------------------------CAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-G----CGGCAGCGGATCA-------------------------------------A-AAA----------------ACATA-----------TTTCATAA--SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................231165783.0016578300009944201181091664182401010603611605451917619748245746586311255633819740106192233306299727042181904227600000000000000000566728392216971422587164946183235822274463439755126159146205542879371792267136290424484076114561020767771101910881474048225943814701652392123400001000207332938646478823444743326123282716000005031221715493945439603303492116876362211509418925137735014260824210483919351634000164193600000462400000270402138478691679371461577639292287400970000308937882354167299532349272329803850466832023252440100264587409060473985712313960432391311053946608148821441791103391329712848396867632585305395138851089541105673243661171317191108277191428796147169253542177741607631344543652803132852271016516757514304837
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................22149902.0049902000089301122131350109301350137130334545501920193817111420812773252256662331272016503801597000000000000000002216151635532613015367201214474318815072717948621522354431167145310923291774568715712217303241742931245908354206523020002100020241932201211312106189106800000239225124932105608591385682332542144499651412226711033701907811660007110120000014130011042714962282581112212518103511400131100177237020311115616131914472974164312948151616706208192572715209013385419158260300105157215278310180432522114411871272159821119135715066133079872532234232271901214912227482613210744524351992055231165468416641384689226268850
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................2117096.007096000038200010100150021000090000212289299105400101001001002212105059400000000000000000274211840021012136717201224351727106820091843123301073890188036197923868444000000000020200000000000000000000060127165066207834912314214011621206110256101000000030000000000000000500021340309100000007801263713011377334925400113010112004023310862991181101422100100205391360103220114116728210711100140106251421737411740
............................................................................CTCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................2214149.004149000000144200000000000000000366710516223050000000000200100000000000000000000000000001001761867501502207203400203141300001720417720013703034915211400000000005113878200000001000000000000076180305642828113177261192421340000019000200000000000000000000000140000000000100000000144122033100031304120008002012002000100010000000005270102949210974241285200001321021000202300120110004106226151106300
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................2412296.00229600002100100100000010100000403000000011000120100021100000118100000000000000000201446319180010015056040110014100343202331001220404290251473800000000001041810021150102000000210900617205200341465112378096300870971013000306100000200000001322732101320203200110003746128210013180425111511130121130132012229142315221818224110625975763514620135035241591590144556411232817501452122006191320
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................2012048.00204800000000000000100400000100021110788643280000000000000000000004110000000000000000001006000000000114007006720640000000010001337650460181633738217839001400000100000000000000000000000000114162066223297109112168116029000101180000000000000000000000000000000001000022000000000003001004202000001100000000000000035000813000009974701000000201000000004000000000006600000011000
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................2411450.001450000000000000000000000420002000000000111110300526533410000000000000000000000000014310610000071250101054112111000130116402022911742114000000000021071123620001500000000111170640440017431480360693000003916180001048000009500000021161202123210190000320035014000055000401140010010110020025670305750716739411211112151810174202152210100241029914010100030000510131000400
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................1911363.00136300000000000000100000000000200242411102220001000004230100000000000000000000000010030000000000000001121000000000000000005506043291200100000000001116391520332320101000002061003848022004542460901100000016230100000000000000000000010721130321104000000005998031700011616051200030020210316001010363034124910361470006324541561573111021510013030101011000000001410100101000
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................221656.006560000401232000000000000000000000000000000002010001100000000000000000000000000000032000000020015001010000100010020100001860403618031960000000000000000000000000000000110001221010004292191310312000003100000000000000000000000000000000000000000000000000031000324100000011000000000120101937114306218560000135940100027330011100000000000000000500000001100
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................181535.0053500000000000000000000010000002212425300000000000000000000000000000000000000000011000000000000000010001004000000000100500210000002302100210000000000000000000000000000000006046052124247943120000022000000000000000000000000000000000000000000000001000100000000000000000000001000000000000110000025010000000000000000000000000000000000000000001
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................191479.004790000000000000020060000000001971317021000000000000000000000110000000000000000000000000900000024009010102800000000001000110100020612200320000000000000000000000000000000082002111187151041721010006000000000000000000000000000000000000000000000000101500003801110000900000000000000001000000000007573100100200000000000000000000000008110000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................251450.004500000000000000000000000000000000000221100030300023001000000000000000000000000000009000400000100400000012000100002100202000000001022000000000001512033130100000000000000111206002407160700000031300000000100000190000000000000310032013000100000100000001100000101000000000000000263810272826258101000225112200456440100005215100000000000004110000000
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................231431.00431000000000420001000000000000000000000000000000000000000000000000000000000000000001102500030000010000111800000000100010200202140202000000000000001000010000100000000000017707007717060132000002800000000000000000000000000000000000000000010000340230000250200000200010000001000032201032141801201915143565911005111001101000010000000000110010101100
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................221345.0034500000000000000200000001000100000000000000110000010010000000000000000000000000000200300000004002000000130000000000000024010217030200000000000000000110000000000000000001112010003803060300000030000000010000000000000000200000010001100000000001101840013801110012110010102054100511110376821309101013130310023430411101100101000000000100100201400
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................231337.0033700002000111020000000000000000000000000100000000020000000000000000000000000000110000000001000000001000200100000101010010000100202100000000000000000000000200000010000036050001304045045400000101000000000000000000000000001000000000000000000002000000013000000000001000000000101368316141452021413181931100022320130300000000000000000100000002000
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................221302.003020000100000010000000000000000000000000000000000003010000000000000000000000000000000001000000101001000150102000000000000000001000210000000000000000120100000000000010004504000903035133100000160000000000000000000000000000000000000000000000000011000046040110110011010000010001044327592010118172641100020102113300000000000000000000000001100
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................181301.0030100000000000000000000000000100000000020000000011100010000000000000000000000000000000000000000000000000000000000000000210300280102000000000001220000000000000000000011091309000200130003000000411000000000000000000000020010000001000000000000030115100115283510010800010100513201062921009231000895190400000010000100000100000000000200000000001
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................231231.002310000400243030000000000100000000000000000000000000010000000000000000000000000000000000000410000000000030000000010000031030323010410000000000000100000000000000000000001016030071117190130000001700000000010000000000000000000000000000010001000100010000480101000000000000000000003000242001007101051001013000200000312100100000000500000003000
.............................................................................TCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................211217.0021700001000000000000000000000030140030000000000000000000000000000000000000000000000200020000002022010001200000000001001010101120000000000000000120000000000000000000000007043310140578150000070000000000000000000000000000000000000000000000023001000030000000040000010000000000000000001000813718133030000003038000001000000000011700200000000
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................211192.00192000000000000000000000000000010000000000000000000000000000000000000000000000000001202112100001102200222745000020004350100002010613013000000000000000000000000000000000010220200230410000000004000000000000000000000000000000000000000000000003600100001400000000000000000000000331000000000011150500000000000000000000100000000100000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................................................................................261192.0019200000000000000000000010000000000000103000000010010000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000150000201000200000000000001000001000000000000001010000003000001400000000000001020010700000000000000000000000000000000000000000018239152228910000000012000014201000000218000000000000000010000000
............................................................................CTCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................211163.0016300000000020000000000000000000134001000000000000000000000100000000000000000001120155532000001017000022500000000131000000000000011000000000000040000000000000000000000061602204413072650000020000000000000000000000000000000000000000000000012000000000000000000000100000000000000000000000121317510000000000000000000000000010100100000000
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................221142.001420000100000010000010000000000000000000000000000000000100001000000000000000000012010036000000000100100080000000012000000000000000000000000000000000000000000000000000006100100504000200000010010000000000000000000000000000000000000000000022001000020000100000000000000001001272907190000012232300002101111002000000000000000000000003000
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................241138.001380000000000010000000000000010000000000000001000000000000000000000000000000000000001010000000000100000050001000000100000010005010430000000000101000000000000000000000001301001603020200001040000000000000000000000000003000000001000000420013001000037100000040000002010000100203010100100343155110000000011100001200000000000500000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTATC.................................................................................................................26198.009800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGA..........................................................................................................................17493.7537500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050300000000000000010000000000000000000000000000010000000000000000000000000000000000000000000010110274004538000071161715300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................21179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000010000000000000001000000001005000000000000000000000000000000000000770400280105050000005000000000000000000000000000000000000000000000000000000001301000000000000000000000020000000000020310000020000000000000000000000000100000000000
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20177.0077000000000000000000000000000000470100000010000000000000000000000000000000000000000000000000000000026200000000000110000000000000021000000000000000000000000000000000000240100090401000000001000000000000000000000000000000000000000000000002100000000000000001000000000000000230202010100003061110000000000000000000000000000000000000000
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................18175.0075000000000000000000000000000010420000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000200000000000001000000100000000000000000350400120410020000000000000000000000000000000000000000000000000000003300000000000000000000000000000000451202010010010144700000000000100000000000000000000000000000
droSim2
ACAAGTGTTCGTGATCCAAGC--------------------------------------CAT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAGCGGATCG-------------------------------------A-AAA----------------ACATA-----------TTTCATAA--SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................2316948.006948160210460112832914118621119338485400001
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................2211889.00188919962514339734131314131767300000
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................2111309.001309291492162872000164300000
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................181646.0064610006957500000000001
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................191288.002881073001316400000100000
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................201240.00240260032818000111000000
............................................................................CTCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................221169.00169100156238000109700000
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................24176.007600010061029224400000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................25158.00580011000729162200000
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................19147.0047602011000043300000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................................................................................26140.0040000000422292100000
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................22137.0037200281200020200000
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................24126.00260001100000201300000
........................................................................................................................TATCACAGCCATTTTGA..........................................................................................................................17426.0010400000012165962000000
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18124.0024700002000141000000
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21121.0021200140400000100000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTCG.................................................................................................................26119.0019000001900000000000
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................22118.0018130000000000500000
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................22118.0018100200000006000000
............................................................................CTCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................21116.001641110700020000000
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................21114.0014140000000000000000
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21111.001100020001100700000
........................................................................................................................TATCACAGCCATTTTG...........................................................................................................................1649.2537000000100036000000
.............................................................................TCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................2118.00800020300000300000
............................................................................CTCCTCAAAG-GGTTGTGAA...................................................................................................................................................................1918.00800000800000000000
...............................................................................................................................GCCATTTTGATGAGTT....................................................................................................................1618.00800000000017000000
............................................................................CTCCTCAAAG-GGTTGTGA....................................................................................................................................................................1817.00700000700000000000
...................................................................................................TCGACTATT--A-TCTACTCA...........................................................................................................................................1817.00700500200000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................2315.00510000000000400000
............................................................................CTCCTCAAAG-GGTTGTGAAA..................................................................................................................................................................2015.00500000500000000000
........................................................................................................................TATCACAGCCATTTT............................................................................................................................1554.2021000000001119000000
.........................................................................................................................ATCACAGCCATTTTGATG........................................................................................................................1814.00400000400000000000
........................................................................................................................TATCACAGCCATTTTGATGAGCAA...................................................................................................................2414.00400000000004000000
........................................................................................................................TATCACAGCCATTTTGATGG.......................................................................................................................2014.00440000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................2414.00400020000010100000
............................................................................CTCCTCAAAG-GGTTGTGAAATGT...............................................................................................................................................................2313.00300001000010100000
.............................................................................TCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................2013.00310000100010000000
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................2213.00320000000100000000
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................1813.00300000000100200000
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................2013.00300000300000000000
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................1913.00310001000000100000
.............................................................................TCCTCAAAG-GGTTGTGAA...................................................................................................................................................................1813.00300000300000000000
...............................................................................................................................................TCGTGCGAA--TC-T----CGGCAG...........................................................................................1813.00300300000000000000
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2412.00200000100000100000
............................................................................................................................ACAGCCATTTTGATGAGTTA...................................................................................................................2012.00200000000101000000
.......................................................................................................................ATATCACAGCCATTTTGA..........................................................................................................................1832.00600000600000000000
.........................................................................................................................ATCACAGCCATTTTGATGAGTTTCG.................................................................................................................2512.00200000200000000000
........................................................................................................................TATCACAGCCATTTTGATGAGCA....................................................................................................................2312.00200000000002000000
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2312.00200020000000000000
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2012.00200000000000200000
............................................................................................................................ACAGCCATTTTGATGAGTTAA..................................................................................................................2112.00200000000002000000
............................................................................CTCCTCAAAG-GGTTGTGAAATGTCG.............................................................................................................................................................2512.00200001100000000000
...............................................................................................................................................TCGTGCGAA--TC-T----CGGCAGCG.........................................................................................2012.00220000000000000000
................CAAGC--------------------------------------CAT-AGTTCTTACGTAA.......................................................................................................................................................................................2111.00100000000000100000
........................................................................................................................TATCACAGCCATTTTGATGT.......................................................................................................................2011.00100000000001000000
droSec2
ACAAGTGTTCGTGATCCAAGC--------------------------------------CAT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----GGTCAGCGGATCG-------------------------------------A-AAA----------------ACATA-----------TTTCATAA--SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23146028.00460286065463350711369
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................2216525.00652543510414434543
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................211597.00597571448478
............................................................................CTCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................221491.0049117637791
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191290.002900022367
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................241165.00165488172
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................22168.006858082
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21158.005830523
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................24152.0052313612
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19152.005270045
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18151.005100942
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................23137.003711278
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23135.0035101123
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................24132.0032011813
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20131.003140027
.............................................................................TCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................21127.002710818
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21127.002726001
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................22113.00130058
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22112.001210110
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................25111.00112153
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................18110.001000100
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................2016.0066000
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................2015.0050050
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................2214.0040022
............................................................................CTCCTCAAAG-GGTTGTGTT...................................................................................................................................................................1914.0042002
............................................................................CTCCTCAAAG-GGTTGTGAA...................................................................................................................................................................1914.0040040
................................................................................TCAAAG-GGTTGTGAAATG................................................................................................................................................................1814.0041003
............................................................................CTCCTCAAAG-GGTTGTGA....................................................................................................................................................................1814.0040013
............................................................................CTCCTCAAAG-GGTTGTGAAA..................................................................................................................................................................2013.0031011
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2013.0030012
............................................................................CTCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................2113.0030030
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................1813.0030012
........................................................................................................................TATCACAGCCATTTTGAGT........................................................................................................................1952.20111046
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2412.0020020
........................................................................................................................TATCACAGCCATTTTGATGAT......................................................................................................................2112.0021001
........................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................................................................................2612.0020020
........................................................................................................................TATCACAGCCATTTTGATGT.......................................................................................................................2012.0020002
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................2412.0020011
.............................................................................TCCTCAAAG-GGTTGTGAAA..................................................................................................................................................................1912.0021001
............................................................................CTCCTCAAAG-GGTTGTGAAATA................................................................................................................................................................2211.0010010
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................2111.0011000
............................................................................................................................ACAGCCATTTTGATGAGC.....................................................................................................................1811.0010001
........................................................................................................................TATCACAGCCATTTTGATA........................................................................................................................1921.0020002
.............................................................................TCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................2011.0010001
.........................................................................................................................ATCACAGCCATTTTGATGAGTC....................................................................................................................2211.0010001
.........................................................................................................................ATCACAGCCATTTTGATGAGG.....................................................................................................................2111.0011000
........................................................................................................................TATCACAGCCATTTTGATGAAA.....................................................................................................................2211.0011000
........................................................................................................................TATCACAGCCATTTTGATT........................................................................................................................1911.0011000
droYak3
ACAAGTGTTCGTGATCCAAGC--------------------------------------CAT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC-T----CGGCAACTTATTT-------------------CAT---------GTATT-T-CAA----------------ACATA-----------TTTCATAA--SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23135057.0035057441354185946623219959093340000
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................2214356.0043563943711765416081477771000
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................2311380.001380011361351000000
............................................................................CTCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................2211187.001187069602114420000
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................241331.003310151303537104100000
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................221274.00274011915311000000
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................211256.0025670343018307040000
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................221215.002152020331600000
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191157.0015720358325930000
............................................................................CTCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................21141.0041203621000000
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18141.004110011101900000
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21137.0037032500000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................24135.00350015631010000
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20132.0032012820100000
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................24131.0031001651810000
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21130.0030041461500000
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................23127.0027002212200000
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19126.0026146301200000
............................................................................CTCCTCAAAG-GGTTGTGAAA..................................................................................................................................................................20116.0016011100400000
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23113.0013001010200000
.........................................................................................................................ATCACAGCCATTTTGATGAGTC....................................................................................................................22113.0013001300000000
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20110.001044101000000
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................1819.00900620100000
........................................................................................................................TATCACAGCCATTTTGATGAGCC....................................................................................................................2318.00800800000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................2418.00801302200000
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................2218.00830011300000
.............................................................................TCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................2117.00702220100000
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2017.00702203000000
............................................................................CTCCTCAAAG-GGTTGTGAAATGT...............................................................................................................................................................2316.00600600000000
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................2116.00640200000000
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................2214.00400110200000
...........................................................................................................................CACAGCCATTTTGATGAGTC....................................................................................................................2014.00400400000000
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................2114.00420001100000
...................................................................................................TCGCCTATT--A-TCTACTCA...........................................................................................................................................1813.00310200000000
...............................................................................................................................................TCGTGCGAA--TC-T----CGGCAACT.........................................................................................2013.00330000000000
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2313.00302100000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................................................................................2513.00301100100000
............................................................................CTCCTCAAAG-GGTTGTGAA...................................................................................................................................................................1912.00200100100000
............................................................................CTCCTCAAAG-GGTTGTGAAATGA...............................................................................................................................................................2312.00200200000000
droEre2
ACAAGTGTTCGTGATCCAAGA--------------------------------------CAC-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-T----AAAAAGCGGGTTA-------------------------------------AGAAA----------------ACATA-----------TTTCAAAA--SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23143373.0043373224714749423340366811738839
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................22114339.001433913171875135055514290991
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................2111143.00114312846721988700
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................231778.0077855728201910
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................241394.0039426177479131220
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................221273.0027316492410120
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................221235.002350210600190
............................................................................CTCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................221189.0018915976912770
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................231164.00164012011600
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191148.001481247443510
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................211101.00101861200030
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................23195.0095213020780
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................24193.0093541652340
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................24185.008514231305300
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19154.005465000421
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20152.0052153500290
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18149.0049101070310
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................24146.004671400340
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21145.0045517230180
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22129.002931301210
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20126.002619210130
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................19112.001210010100
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................25111.00110040070
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................20111.001110010000
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................18110.00100001090
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................18110.00100013060
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2018.0081100060
............................................................................CTCCTCAAAG-GGTTGTGAAATT................................................................................................................................................................2216.0060004020
........................................................................................................................TATCACAGCCATTTTGATGAGCC....................................................................................................................2315.0050400010
............................................................................CTCCTCAAAG-GGTTGTGAAA..................................................................................................................................................................2015.0050010040
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................2215.0050011120
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2314.0041100020
.............................................................................TCCTCAAAG-GGTTGTGAAATG................................................................................................................................................................2114.0041001020
.........................................................................................................................ATCACAGCCATTTTGATGAGTC....................................................................................................................2214.0040400000
...........................................................................................................................CACAGCCATTTTGATGAG......................................................................................................................1814.0040000040
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................2113.0030100020
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2413.0031101000
........................................................................................................................TATCACAGCCATTTTGATGAT......................................................................................................................2113.0030001020
............................................................................CTCCTCAAAG-GGTTGTGAAAT.................................................................................................................................................................2113.0030011010
........................................................................................................................TATCACAGCCATTTTGAGT........................................................................................................................1972.001410002110
dp5
ACAAGTGTTCGGCTCGTACTTTT---------TGG-ACAAAAAAAAAAA--ACCGTCAGCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC---CAG---C----------AATCCATCA-TC-----------GATCGGGGCAGGGCAGGA------------------TGGA-------GCACAGAG--SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23156311.005631101841297839000899764231911075
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................22115200.001520007342925767412772500731016
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................2313063.003063022672379631000
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................2211455.00145500479966280000
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................2111058.00105809190549492715012
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................2411054.001054038408412391487002
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................221368.00368014212795220000
............................................................................CCCATCAAAC-GGTTGTGAAATG................................................................................................................................................................221333.00333045493217100009
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191187.00187017591830000
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................201160.001600275119180000
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................211160.00160056794120000
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................241133.00133017844460000
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................241119.00119086328693002
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21180.00800831201720002
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19151.0051013329240000
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18146.0046002013310000
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................23140.004000286510000
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22134.003404518070000
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20134.0034021114160000
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................21125.002500718000000
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23124.002400106530000
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................20123.002303116110001
.........................................................................................................................ATCACAGCCATTTTGATGAGTC....................................................................................................................22117.001700134000000
........................................................................................................................TATCACAGCCATTTTGATGAGAC....................................................................................................................23116.001600142000000
............................................................................CCCATCAAAC-GGTTGTGAAA..................................................................................................................................................................20115.00150251160000
........................................................................................................................TATCACAGCCATTTTGATGAGCC....................................................................................................................23113.001300111010000
............................................................................CCCATCAAAC-GGTTGTGAAAT.................................................................................................................................................................21112.00120252210000
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................23110.00100307000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................24110.00100033130000
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................22110.00100002620000
.............................................................................CCATCAAAC-GGTTGTGAAATG................................................................................................................................................................2119.0090500400000
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................1919.0090215100000
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................1819.0090140220000
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................2119.0090108000000
.........................................................................................................................ATCACAGCCATTTTGATGAGC.....................................................................................................................2117.0070007000000
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................2017.0070502000000
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2417.0070151000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................................................................................2516.0060122010000
............................................................................CCCATCAAAC-GGTTGTGAA...................................................................................................................................................................1915.0050310000001
............................................................................................................................ACAGCCATTTTGATGAGTTT...................................................................................................................2014.0040001030000
droPer2
ACAAGTGTTCGGCTCGTACTATT---------TGG-ACAAAAA--AAAA--ACCGTCATCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC---CAG---C----------AATCCATCA-TC-----------GATCGGGGCAGGGCAGGA------------------TGGA-------GCACAGAG--SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23114724.001472417346227965765406100
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................2214959.00495953163632380186332
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................211477.0047714592571623
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................241361.003610651531898
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191147.00147001670610
............................................................................CCCATCAAAC-GGTTGTGAAATG................................................................................................................................................................22193.0093134488200
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18158.005800331240
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................22142.00423311340
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................24140.004001512220
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21132.00320290210
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................22121.002100011100
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................23119.00190106120
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................24117.0017002951
............................................................................CCCATCAAAC-GGTTGTGAAAT.................................................................................................................................................................21115.00152100111
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................22112.0012022350
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22112.0012011640
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23110.0010000370
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20110.0010211510
............................................................................CCCATCAAAC-GGTTGTGAAA..................................................................................................................................................................20110.0010111430
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................2019.009012240
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................2117.007001420
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................1916.006110130
........................................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................................................................................2516.006010140
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................1815.005011300
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................2315.005000140
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................2515.005000320
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2014.004020200
............................................................................CCCATCAAAC-GGTTGTGA....................................................................................................................................................................1814.004000040
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................2014.004040000
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................2413.003000120
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................1813.003100020
..........................................................................................................................TCACAGCCATTTTGATGAG......................................................................................................................1913.003000210
........................................................................................................................TATCACAGCCATTTTGATGAGTAA...................................................................................................................2412.002000110
............................................................................................................................ACAGCCATTTTGATGAGTTT...................................................................................................................2012.002000020
............................................................................................................................ACAGCCATTTTGATGAGTTA...................................................................................................................2012.002001010
............................................................................CCCATCAAAC-GGTTGTGAAATGA...............................................................................................................................................................2312.002200000
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2312.002010010
........................................................................................................................TATCACAGCCATTTTGATGATC.....................................................................................................................2212.002000020
...............................................................................................................................................TCGTGTGGA--ATGGC---CAG---C----------................................................................................1812.002000020
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................1912.002002000
droWil2
ACAAGTGTTTTTT----TGG---AATCCGTTCCG--GCAAAAG-----------A----TGGAATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT-C----CTGCAACAGT--------------AT-TC-----------G---------A-AATGGATGGTATCCTTAGA--ATA-------------TGTGAA--SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23154258.005425824712822583985612615
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................22110521.00105211793935036416258
............................................................................CTCTTCAAGGGGGTTGTGAAATG................................................................................................................................................................2314092.00409224153299772
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................2111119.001119234402115728
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................241289.00289010721458
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................221157.00157211102816
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................241143.0014303001067
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................191109.001095320153
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191108.0010812016629
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................251105.001050210840
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21183.008301004627
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20163.0063860247
.............................................................................TCTTCAAGGGGGTTGTGAAATG................................................................................................................................................................22155.0055012439
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................23147.00470003215
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18144.00444001228
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21141.0041526037
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................22138.0038500429
...................................................................................................TTGCC-ATTTTATTCAACTCA...........................................................................................................................................20129.0029820163
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20126.0026030716
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................22125.0025180025
............................................................................CTCTTCAAGGGGGTTGTGAAAT.................................................................................................................................................................22121.0021000210
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23121.0021020811
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22120.0020010316
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................19120.0020010019
........................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................................................................................26217.0034050290
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................20116.0016000115
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................18114.001404037
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................21113.0013120001
............................................................................CTCTTCAAGGGGGTTGTGAAA..................................................................................................................................................................21112.0012000120
.............................................................................TCTTCAAGGGGGTTGTGAAA..................................................................................................................................................................20111.001102153
..........................................................................................................................TCACAGCCATTTTGATGAGTTT...................................................................................................................22110.001000082
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................24110.001013042
.............................................................................TCTTCAAGGGGGTTGTGA....................................................................................................................................................................1819.00900045
.............................................................................TCTTCAAGGGGGTTGTGAAAT.................................................................................................................................................................2118.00800053
...................................................................................................TTGCC-ATTTTATTCAACTC............................................................................................................................................1918.00860011
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................2427.5015000105
............................................................................CTCTTCAAGGGGGTTGTG.....................................................................................................................................................................1817.00710024
............................................................................CTCTTCAAGGGGGTTGTGAA...................................................................................................................................................................2016.00600060
............................................................................CTCTTCAAGGGGGTTGTGA....................................................................................................................................................................1916.00600042
........................................................................................................................TATCACAGCCATTTTGATAGT......................................................................................................................2185.88470011630
............................................................................CTCTTCAAGGGGGTTGTGAAATT................................................................................................................................................................2315.00500050
........................................................................................................................TATCACAGCCATTTTGATGT.......................................................................................................................2015.00500005
........................................................................................................................TATCACAGCCATTTTGATGAGTAA...................................................................................................................2415.00500050
........................................................................................................................TATCACAGCCATTTTGATGG.......................................................................................................................2014.00440000
............................................................................CTCTTCAAGGGGGTTGTGAAATA................................................................................................................................................................2314.00400022
.........................................................................................................................ATCACAGCCATTTTGATGAGTTA...................................................................................................................2313.00303000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAT..................................................................................................................2513.00300030
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2313.00303000
............................................................................CTCTTCAAGGGGGTTGTGAAATC................................................................................................................................................................2313.00300012
........................................................................................................................TATCACAGCCATTTTGATGTT......................................................................................................................2113.00301002
..........................................................................................................................TCACAGCCATTTTGATGAGTTA...................................................................................................................2213.00300012
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................2112.00200002
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................2012.00201001
............................................................................CTCTTCAAGGGGGTTGTGAATG.................................................................................................................................................................2212.00200011
........................................................................................................................TATCACAGCCATTTTGATGAT......................................................................................................................2112.00200011
........................................................................................................................TATCACAGCCATTTTGATGAGTAAA..................................................................................................................2512.00200020
..........................................................................................................................TCACAGCCATTTTGATGAG......................................................................................................................1912.00200002
.........................................................................................................................ATCACAGCCATTTTGATGA.......................................................................................................................1912.00202000
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................1812.00200002
............................................................................CTCTTCAAGGGGGTTGTGAAATGT...............................................................................................................................................................2412.00200020
droVir3
ATAGATAACGTCGCTTCGATA------------------CGTA--AAGA--CCAACCCACTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-G----CTTA-------------AATTCATTG-CC-CTCGTCGGCAGAATG----------GGC------------------TGGC----AAGGACGATTA--SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................23130205.0030205224105143455520117283340003195610164461111108155841194012766533355737150522835311670727012612918275910106612111539294251454241758171185056443500101800310023121000
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................22119272.0019272039944814163913194181012419161040680151713636881121390155914321653539831109385121487211232316913000000011122222200211128265376012556206004260000
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................2416046.00604600201362220790000000201310734121892151211928573371293235311102872200000200000022000041573300000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................2413040.00304001511692392003001025713559160142986812819482153216367994221832108161080000000011231210001161371602201100000020000
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................2111964.00196426115718160261121000113624886664388983032312171709632908002001500000000120412200139195800211200000100000
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................241840.0084000110361001000015731033458109567818113258180920414745390000000000000000000412503200000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................231347.00347005243000000000001011050110010162841902000004000000000000000000039300000000000000000
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191248.00248101217100200001411255619791000381121105030001400000000000000000002275000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................251216.002160010001000003000001150234344352412375432391068000000000000000000000204110000000000000
............................................................................CTCTTCAAGG-GGTTGTGAAATG................................................................................................................................................................221204.002040023405010000024053213111000003060004210000000000000100000001046200000200000004310
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................221149.001490511030000000000031210103000002103000000000000000000000000000023000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTCA..................................................................................................................251139.00139000033100000000000001100102322519435090100511000000000000000000000201100000000000000
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................181124.001240000101101000034377421013000007224060030030000000000000000000139000000000000000000
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................221115.00115008421000000000011100001300001110000000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20196.00960427600000000005512330620000024010020000000000000000000000000111100000010000000000
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21196.009600787000000000011200002000000000500000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19183.00830351510000000000321202023000000201100000000000000000000000011011000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23179.00790002000000000013014360100020141361502010012000000000000000000002000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................24175.00750010000000000025153021200000101421202001103000000000000000000008000000000000000000
............................................................................................................................ACAGCCATTTTGATGAGTTC...................................................................................................................20173.007300101800000000000000800100009368090000316000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTCT..................................................................................................................25161.0061000000000000000000002000010099524000000010000000000000000000000100000000000000000
............................................................................................................................ACAGCCATTTTGATGAGTTT...................................................................................................................20142.00420000020000000023100327100000132104000008000000000000000000002000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTAA...................................................................................................................24141.004100001000000000000010000100003451011134023000000000000000000001000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................................................................................25137.00370000000000000044022204200000381500000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22134.00340070000000000022011211200000024600000000000000000000000000003000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.................................................................................................................26225.005000000000000030000000100211512126401311310000000000000000000000000100100000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTA..................................................................................................................25123.00230000020000000010000010000000330301001003000000000000000000000000500000000000000
.............................................................................TCTTCAAGG-GGTTGTGAAATG................................................................................................................................................................21121.00210012000000000000010101000001111100000000000000000000000000042300000000000000001
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................20118.00180032000000000101021000300000320000000000000000000000000000000000000000000000000
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................20117.001700170000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................21115.00150034000000000000000001000000210100000000000000000000000000011100000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTC..................................................................................................................25114.00140000000000000000000040000000121300000003000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGAT.........................................................................................................................18114.00140200000000000011111011000000200200000000000000000000000000001000000000000000000
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................20111.00110016100000000000010000000000000000000000000000000000000000011000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................23110.00100003000000000000000000010000000000000000000000000000000000013002000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................22110.00100300000000000010000000000000000000000000000000000000000000006000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTCC...................................................................................................................24110.00100000011000000000000010000100001101000003000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTAT..................................................................................................................25110.00100000000000000000000000000000420301000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTCA...................................................................................................................24110.00100000000000000000000000000000151201000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTCC.................................................................................................................2619.0090000011000000000000000000000030002000002000000000000000000000000000000000000000
............................................................................................................................ACAGCCATTTTGATGAGTTA...................................................................................................................2018.0080000110000000000000000000000101000000004000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................2118.0080401000000000000000000000000000000000000000000000000000000003000000000000000000
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2318.0080043000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................1817.0070002000000000001100000010000010100000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATC........................................................................................................................1917.0070000000000000000000000000000320200000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGA..........................................................................................................................1736.67200000000000000000000000000000000000000000000000000200000000000009600200000000001
........................................................................................................................TATCACAGCCATTTTGATGAA......................................................................................................................2115.0050000000000000000101001000000100000000000000000000000000000001000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTTCC................................................................................................................2715.0050000000000000000000000000100010201000000000000000000000000000000000000000000000
..........................................................................................................................TCACAGCCATTTTGATGAGTTT...................................................................................................................2215.0050001000000000012000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................1915.0050030000000000000101000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAT......................................................................................................................2114.0040000000000000000010000010000000000000000000000000000000000002000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTTT.................................................................................................................2614.0040000000001000000000000000000102000000000000000000000000000000000000000000000000
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2414.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................ATCACAGCCATTTTGATGA.......................................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTCTC.................................................................................................................2614.0040000100000000000000010000000011000000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTTAA.................................................................................................................2623.5070000000000000000000000000021111100000000000000000000000000000000000000000000000
........................................................................................................................TATCACAGCCATTTTGATGAGTTCAA.................................................................................................................2623.5070000000000000000000000000010200201010000000000000000000000000000000000000000000
........................................................CCACTC-AATTCTTGCGTAA.......................................................................................................................................................................................1913.0030000000000000010000000000000100000000000000000000000000000001000000000000000000
droMoj3
ACAAGTGTTTGCATCTCATTATA---------TGGGACACTTA--ACGATCTCCGCCCATTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TT-GCTTTCAGCA-------------TT-----GTCC-----------C----------ATCCGTTTTGTGTCACTGGA--TTATCCACCTCAATCTCCATCT--SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................231190549.0019054929361155441457518163827569
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................22117075.001707513529341070172111853145
........................................................................................................................TATCACAGCCATTTTGATGAGTC....................................................................................................................2319237.0092377166192070
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................2413042.0030425982122264249025
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................2212246.00224628951319480
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................2211724.0017241421117060
............................................................................CTCTTCAAGG-GGTTGTGAAATG................................................................................................................................................................221999.0099954366125373
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................211795.00795160289012038116
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................241423.004231314543816
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................211362.0036259123450
............................................................................................................................ACAGCCATTTTGATGAGTT....................................................................................................................191351.0035129247951150
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................211243.002431341111060
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................241223.0022361012131811
...........................................................................................................................CACAGCCATTTTGATGAGTT....................................................................................................................201217.0021752122070
........................................................................................................................TATCACAGCCATTTTGATGAGTG....................................................................................................................231111.0011110021080
.........................................................................................................................ATCACAGCCATTTTGATGAGTC....................................................................................................................221107.0010700001070
.............................................................................................................................CAGCCATTTTGATGAGTT....................................................................................................................181101.001012111960
........................................................................................................................TATCACAGCCATTTTGATGAGCC....................................................................................................................23190.00900001890
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................20175.0075244710300
............................................................................................................................ACAGCCATTTTGATGAGT.....................................................................................................................18165.0065220172420
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................24149.00493232390
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................23146.00462000431
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................23137.00372043280
........................................................................................................................TATCACAGCCATTTTGATGAGA.....................................................................................................................22135.00355115230
........................................................................................................................TATCACAGCCATTTTGATGAGAC....................................................................................................................23128.00280000280
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................24126.00261000250
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................19124.00241405500
...........................................................................................................................CACAGCCATTTTGATGAGTC....................................................................................................................20124.00240000240
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................20124.00244003170
.........................................................................................................................ATCACAGCCATTTTGATGAGC.....................................................................................................................21122.00220000220
..........................................................................................................................TCACAGCCATTTTGATGAGTC....................................................................................................................21122.00220000220
........................................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................................................................................25120.00201132130
........................................................................................................................TATCACAGCCATTTTGATGAGG.....................................................................................................................22118.0018052380
.........................................................................................................................ATCACAGCCATTTTGATGAG......................................................................................................................20117.00171400030
............................................................................CTCTTCAAGG-GGTTGTGAAAT.................................................................................................................................................................21115.00150100140
............................................................................CTCTTCAAGG-GGTTGTGAAA..................................................................................................................................................................20115.00150001140
........................................................................................................................TATCACAGCCATTTTGATGAC......................................................................................................................21113.00130000130
...........................................................................................................................CACAGCCATTTTGATGAGT.....................................................................................................................19112.0012220080
............................................................................................................................ACAGCCATTTTGATGAGTC....................................................................................................................19111.00110000110
........................................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................................................................................2519.009301131
.........................................................................................................................ATCACAGCCATTTTGATGAGTTA...................................................................................................................2319.009200070
..........................................................................................................................TCACAGCCATTTTGATGAGTTT...................................................................................................................2217.007000070
........................................................................................................................TATCACAGCCATTTTGATGATC.....................................................................................................................2217.007000070
droGri2
GCATACATCTGCA---------------------G-ACTGTGA--GCGAACCAAGCCCACCC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT-GCTTTCA--------TCACAGTGAT-CATTG-TCCCTCGC-------------CGGGGCCGGT------------------TCGT--GC---AGTCGCCG--SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
........................................................................................................................TATCACAGCCATTTTGATGAGTT....................................................................................................................231455.00455293162
........................................................................................................................TATCACAGCCATTTTGATGAGT.....................................................................................................................221180.0018014436
.........................................................................................................................ATCACAGCCATTTTGATGAGTT....................................................................................................................22128.0028280
........................................................................................................................TATCACAGCCATTTTGATGAG......................................................................................................................21121.0021201
........................................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................................................................................24119.0019118
.........................................................................................................................ATCACAGCCATTTTGATGAGT.....................................................................................................................21117.0017170
............................................................................CTCTTCAAGG-GGTTGTGAAATG................................................................................................................................................................2214.00422
........................................................................................................................TATCACAGCCATTTTGATGA.......................................................................................................................2013.00321
..........................................................................................................................TCACAGCCATTTTGATGAGTT....................................................................................................................2112.00220
........................................................................................................................TATCACAGCCATTTTGATG........................................................................................................................1912.00220
........................................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................................................................................2412.00220
........................................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................................................................................2412.00220
.........................................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................................................................................2311.00110
........................................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................................................................................2411.00110
.......................................................................................................................ATATCACAGCCATTTTGATGAGTT....................................................................................................................2411.00110
..........................................................................................................................TCACAGCCATTTTGATGAGT.....................................................................................................................2011.00110
........................................................................................................................TATCACAGCCATTTTGATGAGC.....................................................................................................................2211.00101
.......................................................................................................................ATATCACAGCCATTTTGATGAG......................................................................................................................2211.00110
........................................................................................................................TATCACAGCCATTTTGATGAGTA....................................................................................................................2320.50101
........................................................................................................................TATCACAGCCATTTTGAGT........................................................................................................................1960.17101

Generated: 10/20/2015 at 06:54 PM