ID:

dps_986

 Coordinate:

3:2928728-2928950 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.0 -6.8 -6.8 -6.8

Flybase annnotation

exon [dpse_GLEANR_15213:1]; CDS [Dpse\GA21371-cds]; exon [dpse_GLEANR_15213:2]; CDS [Dpse\GA21371-cds]; intron [Dpse\GA21371-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------------############-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAAGTCCGATAAGTTTCTTTCTTTCTTTTGCTTCAAAATGGCTGATCAGGTAAGACTTTCGGAAAATGTGTTGAAATTAATGATTTATAGCGGTTTTAAGGCGGATGTGAGGTAAATTGATAGTGCCAGATGGAAAGTAAGTGAGTTGTGCGTGAATAAACTTTGTATGGAGGGATGTCAAGTGATGCGGAAGAAGAAACTGTGGTCCATGTTCAACCTAACCTTACTTTAGCGCATGGTATCTGACAAAGTGTACACGAAATGTATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCG
**********************************************************************************************************************************************...((..(((((........(((((((................))))))).......)).)))....))**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
 V112
male body		 GSM343916
embryo
 SRR902011
testis
 SRR902012
CNS imaginal disc
 GSM444067
head
...................................................................................................................................................................................................................................................................................................CGCAAACTACTGGCGGTGGCCA.......... 22 3 1 54.00 54 52 0 0 2 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGCAAACTACTGGCGGTGGCC........... 21 3 3 50.67 152 152 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGCAAACTACTGGCGGTGGC............ 20 3 15 16.07 241 241 0 0 0 0 0 0 0
........................TCTTTTGCTTCAAAATGGCTGATCAGAA............................................................................................................................................................................................................................................................................... 28 2 1 4.00 4 1 3 0 0 0 0 0 0
.............................TGCTTCAAAATGGCTGATCAGAA............................................................................................................................................................................................................................................................................... 23 2 1 3.00 3 2 1 0 0 0 0 0 0
..............................................................................................................................................TGAGTTGTGCGTGAATAAACTTTG............................................................................................................................................................. 24 0 1 2.00 2 0 0 0 0 0 2 0 0
...............................CTTCAAAATGGCTGATCAGAAC.............................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GCAAACTACTGGCGGTGGCCA.......... 21 3 5 1.00 5 5 0 0 0 0 0 0 0
...........................................................................................................................................................ACTAAACTTTGTATAGAGGGATGTC............................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GCGGAAGAAGAAACTGTGGTCCAT................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0
.........................CTTTTGCTTCAAAATGGCTGATC................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................TTTGCTTCAAAATGGCTGATCAGAA............................................................................................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................AAATGGCTGATCAGGTAAGACTTTC...................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................TGCTTCAAAATGGCTGATCAGAAC.............................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACACGAAGTGTATTCCGGCAA............................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
........................................GGCTGATCAGGTAAGACTTT....................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1
..............................GCTTCAAAATGGCTGATCAGAA............................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
........................TCTTTTGCTTCAAAATGGCTGATC................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................TGTTCTTTTGCTTCAAAATGGCT....................................................................................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AAACAACATGCGGTGGCCACTGTGCGGC. 28 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CCGCAAACTACTGGCGGTGGCCA.......... 23 3 1 1.00 1 1 0 0 0 0 0 0 0
.......................TTCTTTTGCTTCAAAATGGCTGATCAAAA............................................................................................................................................................................................................................................................................... 29 3 1 1.00 1 1 0 0 0 0 0 0 0
........................TCTTTTGCTTCAAAATGGCTGATCAGG................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................TTCAAAATGGCTGATCAGA................................................................................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGAAGAAACTGTGGTCCATGTT............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................TTTGCTTCAAAATGGCTGATCAGAAC.............................................................................................................................................................................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0
...............................CTTCAAAATGGCTGATCAGA................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................TAAGACTTTCGGAAAATGTGTTGAAA...................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................CATGCGGTGGCCACTGTG..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CGGTGGCCACTGTGCGGCG 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GAATAAACTTTGTATAGAGGGAT.................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................GAATCAGCTTTGAATGGAGGG.................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
....................................AAATGGCTGATCAGGTAAGAC.......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................AATCTTTATAGCGGTTTTAAGGC............................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GCAAACTACTGGCGGTGGCC........... 20 3 10 0.90 9 9 0 0 0 0 0 0 0
................................TTCAAAATGGCTGATCAGAAC.............................................................................................................................................................................................................................................................................. 21 3 3 0.67 2 0 0 1 0 0 0 1 0
..............................GCTCCAACATGGCTGATCA.................................................................................................................................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGCAAACTACCGGCGGTGGCC........... 21 3 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CCGCAAACTACTGGCGGTGGC............ 21 3 5 0.40 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGCAAACTACTTGCGGTGG............. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AACAGAACGTGCATGCCG.............................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0
..........TAAGTTTCTTTCTTTCTTTTGCT.................................................................................................................................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATGGAATCCAGCAATCTGAAC........................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.................................TCAAAATGGCTGATCAGAAC.............................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0
..................................................GTAAGATTATCGGATAATGT............................................................................................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0
....................................................................................................................GTTGATAGTGCCATATGGG............................................................................................................................................................................................ 19 3 15 0.07 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CAAACTACTGGCGGTGGCCA.......... 20 3 17 0.06 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TTTTTATGAAGGGGTGTCA.............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0
.................................TCAAGATGGCCGATCAAGT............................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................TAGCGGTTTTCAGTCG........................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.............................................................................................................................................GTGAGCTGTGCCTGAATAG................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................TAGAAGAAGCTGTGGTCTA................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TATTCAGGCTATTCAAAGAAAGAAAGAAAACGAAGTTTTACCGACTAGTCCATTCTGAAAGCCTTTTACACAACTTTAATTACTAAATATCGCCAAAATTCCGCCTACACTCCATTTAACTATCACGGTCTACCTTTCATTCACTCAACACGCACTTATTTGAAACATACCTCCCTACAGTTCACTACGCCTTCTTCTTTGACACCAGGTACAAGTTGGATTGGAATGAAATCGCGTACCATAGACTGTTTCACATGTGCTTTACATAAGGTCGTTTGACTTGCACGTAAGGCGTTTGTTGTACGCCACCGGTGACACGCCGC
****************************************************************************************************************...((..(((((........(((((((................))))))).......)).)))....))********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 GSM343916
embryo
...................................................................................................................................................................................................................................................................................................GCGTTTGATGACCGCCACCG............ 20 3 15 1.60 24 24 0 0
...................................................................................................................................................................AGCATACTTCCCTACAGTTG............................................................................................................................................ 20 3 1 1.00 1 1 0 0
..........................................................................................................................TCTCGGTCTACATTTCATTCAT................................................................................................................................................................................... 22 3 3 0.67 2 0 2 0
..................................................................................................................................................................................................................................................................................................CGCGTTTGATGTCCGCCACCG............ 21 3 2 0.50 1 1 0 0
...................................................................................................................................................................................................................................................................................................GCGTTTGATGACCGCCACCGG........... 21 3 3 0.33 1 1 0 0
......................................................................................................................................................................................................TTGTCACCAGGTGCAAGTTT......................................................................................................... 20 3 3 0.33 1 1 0 0
.........................................................................................................................................................................................................................................................................................GGGGCGTAAGGCGTTTGTTGT..................... 21 3 9 0.11 1 1 0 0
...........................................................................................................................CGCGGTCAACCCTTCATTC..................................................................................................................................................................................... 19 3 9 0.11 1 1 0 0
...................................................................................................................................................................................................................CAAGTTGGGCTGGAATGC.............................................................................................. 18 3 15 0.07 1 1 0 0
......................................................................................................................................................................................................................................................................................................TTTGTTGTCCGCCACCAGGG......... 20 3 20 0.05 1 0 0 1
...................................................................................................................................................................................................................................................................................................TCGTTTGTTGTGCGCCACC............. 19 2 20 0.05 1 0 0 1
...................................................................................................................................................................................................................................GAAACCGCGCACCATATAC............................................................................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:2928678-2929000 + dps_986 ATAAGTCCGATAAGTTTCTTTCTTT-CTTTTGCTTCAAAATGGCTGATCAGGTAAGACTT-TCGGAAAATGTGTTG-AAATT-AATGATT-TATAGCGGTTTTAAGGC---GGATGTGAGGTAA-------ATTGATAGTGCCAGATG-GAAAGTAAGTGAGTTGTGCGTGAAT-AAACT----------TTGTA-T-GGAGGG-------ATGT----------------------------------CAAGTGATGCG-G-AA-GAAGAAACTGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACAC----GA--------------------AAT---GT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCG
droPer2 scaffold_2:3119081-3119403 + ATAAGTCCGATAAGTTTCTTTCTTT-CTTTTGCTTCAAAATGGCTGATCAGGTAAGACTT-TCGGAAAATGTGTTG-AAATT-AATCATT-TATAGCGGTTTTAAGGC---GGATGTGAGGTAA-------ATACATAGTGGCAGATG-GAAAGTAAGTGAGTTGAGCGTGAAT-AAACT----------TTGTA-T-AGAGGG-------ATGT----------------------------------CAAGTGATGCG-G-AA-GAAGAAACTGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACAC----GA--------------------AAT---GT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCG
droWil2 scf2_1100000004558:529580-529889 - T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCGT-A---AAAATGTGGTCAAAATTAAATAAAT-TGAGTGCGATAAAGTGT---AAACATC-AGTGG-------ATTGAGCTGGACAAAGA-GTCAACAAGTGACTTGTGT-TGGAA-GATAT-------G--CCGGA-TTGGATTG-------ATGA----------------------------------GGAGTAATCCT-A-AT-GCATCATCGATGGA--GCCCGCTTCAACCTAACCCTACTTTCCAGCATGGTG------------TCTCAAGAACTGAAACA----AC--------------------TTT---TTATATTGTAGCAAACCGAGCGCGCTTTCCGCAAACAGCATGCGGTGCCAACCGTGCGTCG
droVir3 scaffold_12875:6773004-6773364 + dvi_5536 T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAG-CAAAAATGTGTTCGA--AATTAAATAAAA-TACGGCATTTAATGCGC---TGCTATAAGATAA-------ATGCACTGTGAAATGTG-AAAT-TAAGTGCATTGTGAGTTGAA-CTACACAA--TTGCTGTGCAGC-GCAATCATTGTGAGTGTATTGTTTGGGAAAT--------CG---------AAATTC--AACA-G-CC-AG-------ATAGGCCAGCATATTCAACCTAACCACACTTGCACGCATGCTTCGAACGCTGGTGTCTCACAATGTACACAC--TCGGAATT-----TTATT-------ATTATTATTATTATAGCAAACGGAACGTGCATTTCGCAAGCAGCACTCGGTGCCGACAACGCGTCG
droMoj3 scaffold_6496:13444852-13445190 - T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAG-CAAAAATGTGTTCGA--AATTAAATAAAA-TACGTCAGTTATAGCAT---TGCTATAAAACAA-------ATTTAATGTGAAATGTG-AAATAT-GGTGCATTGTGAGTTGAG-CAATACAT--TTACTGTATA-C-CATTGA-------ATGTGTTGTTTTC------CAAA------------AAGGAGAAGCAACA-G-CG-AGT------GAGG---CTCACATTCAACCTAACCACACTTCTACGCATGCTG------------TTTACGCTGCTAAATACACTTGGAATT-----TGACT-------AT---TATTTTTGTAGCAAACAGAACGCGCATTTCGCAAGCAACACTCAGTGCCGACAATACGACG
droGri2 scaffold_15112:1650445-1650802 + T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAC-CAAAAGTGTGTTCGA--AATTAAATAAAA-TACAGCATTTAATGCGC---TACACTATGATAC-------AACCAAAGTGAATTGTG-AAGT-TAAGTGTGTTGTGAGTACAC-CCAGACAATA-ATTTTTACAGT-ACAAGCACTGCAAGTGCATTGTTTGGCAAAG--------AC---------AAATTT--AC--------AACTCAG--CTCATCGAG--CATTCAACCTAACCAAACTTTTAGGCATGCTG--A------A--TATCTCACAACACACAC----AAAATGTGGAATAGCTATTTATTTTGA--TTGGTTGTAGCAAATGGAACGTGCGTTTTGCAAACAAAATGCGGTGCCGACAACGCGTCG
droAna3 scaffold_13266:5381477-5381775 - T----------------CTTTCTTTCTTTT--TTTCAACATGGCTGATCAGGTAAGGTTTTCAAAAACGCGTGAAC--AATA-AATGAAAATAAGGCAATGAA-GCAAGGAAATTGCGAAATGG-------AA----------------ATGTGCAAGTAAGTTATTGCTTG-C-AAATC----------AA----T-GGA----------------------------CTGGACGGTGAAATATTCTGGAAACAATT-C----C-AGG--GA-GTCAA---AGCAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACAC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGAGCCTTTCGCAAGCAGCACGCGGTGGTTGTGGTGCGCCG
droBip1 scf7180000395751:1163486-1163784 - T----------------CTTTCTTTCTTTT--TTTCAACATGGCTGATCAGGTAAGGTTTTTA--AAAACGCGTTAACAATA-AATGAAAATTAGGCGAGGAA-GCCTGGAAAAAGCGAAATGGGAACGGAAGA----GTGAGTGATT-GCTTG-------CAAATCAATGGAC-CGGAC----------TG----T-GAA----------------------------ATATC------------TAGCAAACAACT-G----A-AGG--GA-GTCAG---AGAAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACAC----GA--------------------AAT---GTATATTCCAGCAAACTGAACGAGCTTTTCGCAAGCAGCACGCGGTTGTTGTGGTGCGCCG
droKik1 scf7180000302411:851938-852241 - T--------------------CTTTCCTCTTTCAACAACATGGCTGATCAGGTAAGATTC-CACGACAATGTGTAA--AATA-AATGAAA-TACGCGGCCTAAACCAC---GGATGCAAAATGA-------AAAGAGACAGCCAAAGAGGTTTGTAAGTGAGACGTGA-TGGATGGAAGC----------GA----T-GGA----------------------------AAGGC------------CGGGACACCGAGCG-G-CAGCCAACAA-TTCGC---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------CCTCAAATAGTGTACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTTGTGGTGCGACG
droFic1 scf7180000453778:443551-443857 + T--------------TTCTTTCTTTCTTTTTCCATCAACATGGCTGATCAGGTAGGATTT-CGCTACGGCGTGCTA--ACTA-AATGAAA-TAGGCGTAAAAAACGGC---GGACAAATAACCA-------ACACACGATGACGGAGG-CCGTATAAGTGAGCTGTAGGTGAAC-GCGAC----------GC----C-GGA----------------------------GAAGC------------GATGGGCCACCTAG-G-AG-TGAACCA-TCTAG---AGCAGCCTCACCCTAACCCCACTTTAGCGCATGGTG------------TCTCCAGTAGTGAAC-C----AA--------------------ATT---GTATGTTGCAGCAAACCGAGCGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCG
droEle1 scf7180000491349:36379-36682 + C----------------C--TCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGAATA-C-CGAGAGTTCGTTG--AAAT-AGTGAAA-TACGCTGCTTAAACAAC---GGTTGGAGATTCC-------GGACAAAGTGCCAGAGG-CCTTGTAAGTGAGCTGTTGCTGGAC-GAACC----------AG----A-GGA----------------------------GGTGT------------CAGGAATCGACCCA-G-CAAGACAGAA-TCCGG---AGCAGCCTCGACCTAACCCCACTTTAGCGCATGGTG------------TCGCACGTAGTGAACTC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGCGCGTTCCGCAAGCAGCACGCGGTGGTCGTTGTGCGCCG
droRho1 scf7180000777695:17889-18193 + C------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CCAGAGAGTGAGCTA--AATA-AATGAAA-TACGCATGTTAAACGGC---GGATGGAGTCCCG-------AAACAAGATGCCAGAGG-CGGTGTAAGTGAGATGTGGGTGAAC-AAATC----------AC----T-GGA----------------------------GGAGC------------CATGAATCGCCTGC-T-CGGGCCACAG-TTTGG---AGCAGCTTCGCCCTAACCCTACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGTCG
droBia1 scf7180000301754:1834664-1834967 + -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CATGAGGAAGTGCTT--AATA-AATGAAA-TTCGCGGGTTAAACGAC---GGTTGCAAACCCG-------AAACAAGATGCCAAGGG-AAGTGTAAGTGAGATGTGACTGGAC-GAACC----------GC----T-GGC----------------------------GGGCA------------AGAGGAACACCCTGAG-GA-AAGGCAT-TCCAG---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCG
droTak1 scf7180000415091:141036-141340 - -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CATGAGGAAGTGCTT--AATA-AATGAAA-TACGCGGCTTAAACGTC---GCATGCAGACCCG-------AAACAAGATGCCACGGG-GAGTGTAAGTGACGCACGAGTGGAT-GAACC----------GC----C-GCA----------------------------GGAGA------------AGCGAAACCGCCTG-GGCGCCACACAA-CCCGA---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCAAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTCGTTGTGCGTCG
droEug1 scf7180000409462:2035654-2035956 + -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGATTGTGCTT--AATA-AATGAAA-TACGCGCGTTAAACGGC---GGATGGAGACACA-------AAACATGTTGCCCGAGG-ACTTGTAAGTGAGATATGAGTGGAC-CAATT----------CG----T-GAC----------------------------GGAGC------------GAGGAAACTCCATA-G-AA-GCCAAAA-CTCAA---ACCAACCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACTGAACGCGCGTTCCGCAAACAACATGCTGTTGTCGTTGTGCGTCG
dm3 chr2R:8088006-8088311 - -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGTTAAACGGC---TGATGCGAACCCG-------CAACAAGATGCCCTCTG-AAGTGTAAGTGACCAGTGAATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GAACAAACGCACTG-G-GA-AGCGTAG-CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GAAATG-----------------AT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTTGTGCGTCG
droSim2 2r:8793090-8793395 - dsi_1735 -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGCTAAACGGC---TCATACGAGCCCG-------CAACAAGATGCCCTCTA-AAGTGTAAGTGACCAGTGAATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GGGCAAACGCCCTG-G-GA-GGCGCAA-CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GAAATG-----------------AT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCG
droSec2 scaffold_1:5632496-5632804 - dse_652 T----------------TGTTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGTTAAACGGC---TCATACGAGCCCG-------CAACAAGATGCCCTCTA-AAGTGTAAGTGCCTAGTGAATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GGGCAAACGCCATG-G-GA-AGCGAAA-CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GAAATG-----------------AT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAAAACGCGGTGGTCGTAGTGCGTCG
droYak3 2R:8861907-8862209 + -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTG--AATA-AATGAAA-TACGCGGGTTAAACGGC---GGATGCAAAGCCG-------AAGCAAAATGCCCGATG-AGGTGTAAGTGACGAGTGAGTGGAC-AAACC----------TA----T-GGA----------------------------ATAGC------------GAGCAAAAGCCCTG-G-GA-AGCGCAG-CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCG
droEre2 scaffold_4845:17707339-17707641 + -------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGTTAAACGGC---GGATGCGAAGCCG-------AAACAAGATGCCCGATG-ATGTGTAAGTGACGAGTGAGTGGAC-ACACC----------CA----T-GGA----------------------------GTAGC------------AAGCAATCGCCCTG-G-GA-AGCGCAG-CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCTGTGGTTGTTGTGCGTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATAAGTCCGATAAGTTTCTTTCTTT-CTTTTGCTTCAAAATGGCTGATCAGGTAAGACTT-TCGGAAAATGTGTTG-AAATT-AATGATT-TATAGCGGTTTTAAGGC---GGATGTGAGGTAA-------ATTGATAGTGCCAGATG-GAAAGTAAGTGAGTTGTGCGTGAAT-AAACT----------TTGTA-T-GGAGGG-------ATGT----------------------------------CAAGTGATGCG-G-AA-GAAGAAACTGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACAC----GA--------------------AAT---GT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................T-CTTTTGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2814.0040100000300
..............................TGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2313.0030200000100
..............................................................................................................................................................TGAGTTGTGCGTGAAT-AAACT----------TTG.......................................................................................................................................................................................................................................................2412.0020000000020
................................CTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................GCG-G-AA-GAAGAAACTGTGG---TCCAT.........................................................................................................................................................2411.0010000000001
..........................CTTTTGCTTCAAAATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................TTTGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................AAATGGCTGATCAGGTAAGACTT-TC.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
..............................TGCTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................GGCTGATCAGGTAAGACTT-T..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
...............................GCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................T-CTTTTGCTTCAAAATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACATGCGGTGGCCACTGTGCGGC.2811.0010010000000
.......................TT-CTTTTGCTTCAAAATGGCTGATCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
........................T-CTTTTGCTTCAAAATGGCTGATCAGG....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................TTCAAAATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................G-AA-GAAGAAACTGTGG---TCCATGTT......................................................................................................................................................2411.0010100000000
............................TTTGCTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................CTTCAAAATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................TAAGACTT-TCGGAAAATGTGTTG-AAA........................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGGTGGCCACTGTG.....1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGCCACTGTGCGGCG1911.0010100000000
.....................................AAATGGCTGATCAGGTAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.................................TTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2130.6720010000001
..........TAAGTTTCTTTCTTT-CTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
..................................TCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000000
droPer2
ATAAGTCCGATAAGTTTCTTTCTTT-CTTTTGCTTCAAAATGGCTGATCAGGTAAGACTT-TCGGAAAATGTGTTG-AAATT-AATCATT-TATAGCGGTTTTAAGGC---GGATGTGAGGTAA-------ATACATAGTGGCAGATG-GAAAGTAAGTGAGTTGAGCGTGAAT-AAACT----------TTGTA-T-AGAGGG-------ATGT----------------------------------CAAGTGATGCG-G-AA-GAAGAAACTGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACAC----GA--------------------AAT---GT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................TTGCTTCAAAATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2013.003210000
................................CTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
.......................TT-CTTTTGCTTCAAAATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
..........................................GCTGATCAGGTAAGACTT-...........................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.....................................................................................................................................................GAAAGTAAGTGAGTTGAGC................................................................................................................................................................................................................................................................................1912.002200000
.................................TTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2121.503300000
...............................GCTTCAAAATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................CAACCTAACCTTACTTTAGCGCATGGT...........................................................................................................................2711.001001000
............................TTTGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................G-------ATGT----------------------------------CAAGTGATGCG-G-AA-GAAGA.........................................................................................................................................................................2411.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAACTGAACGTGCAT..................................1911.001000001
...................TTCTTT-CTTTTGCTTCAAAATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................................................................................................................AGTGGCAGATG-GAAAGTA............................................................................................................................................................................................................................................................................................1811.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGCGGTGGCCACTGTGCGGC.2311.001000001
......................................AATGGCTGATCAGGTAAGACT.............................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACATGCGGTGGCCACTGTGCG...2211.001000001
..................................TCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2040.502200000
droWil2
T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCGT-A---AAAATGTGGTCAAAATTAAATAAAT-TGAGTGCGATAAAGTGT---AAACATC-AGTGG-------ATTGAGCTGGACAAAGA-GTCAACAAGTGACTTGTGT-TGGAA-GATAT-------G--CCGGA-TTGGATTG-------ATGA----------------------------------GGAGTAATCCT-A-AT-GCATCATCGATGGA--GCCCGCTTCAACCTAACCCTACTTTCCAGCATGGTG------------TCTCAAGAACTGAAACA----AC--------------------TTT---TTATATTGTAGCAAACCGAGCGCGCTTTCCGCAAACAGCATGCGGTGCCAACCGTGCGTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................CTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1916.00601041
...................TTCTTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2613.00302010
........................TCCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................2013.00302010
........................................TGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................1813.00330000
.........................CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2013.00300030
......................TTTCCTCTTGCTCCAACATG..............................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000
.................................TCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
............................CTTGCTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200
......................TTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
...................TTCTTTCCTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2712.00211000
...................TTCTTTCCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000
........................TCCTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2612.00201010
....................TCTTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
.............................TTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.......................TTCCTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.......................TTCCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
................................CTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.............................TTGCTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...............................GCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
......................................CATGGCTGATCAGGTAAG................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................................TCCAACATGGCTGATCAGGTAAGGCGT-A---.......................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
....................TCTTTCCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.......................TTCCTCTTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
.......................TTCCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.................................TCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................CTTTCCTCTTGCTCCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................CTTTCCTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..............................................ATCAGGTAAGGCGT-A---AAAA...................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................GT---AAACATC-AGTGG-------ATTGA................................................................................................................................................................................................................................................................................................................1911.00100010
................................CTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.........................................GGCTGATCAGGTAAGGCGT-A---AAAATG.................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
..................................................................................................................................................................................................A-TTGGATTG-------ATGA----------------------------------GGAGT..........................................................................................................................................................................................1811.00100010
.....................CTTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.......................................................................................................................................................CAACAAGTGACTTGTGT-TGGAA-.........................................................................................................................................................................................................................................................................2211.00100100
..........................CTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
................................CTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.........................CCTCTTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.....................CTTTCCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................................................................................................................................................................A-GATAT-------G--CCGGA-TTGGATTG-------ATGA----------------------------------...............................................................................................................................................................................................2411.00100100
...........................TCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................TTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
................................................................................................................AACATC-AGTGG-------ATTGAGCTG............................................................................................................................................................................................................................................................................................................2011.00100001
.......................................................................................................................................................CAACAAGTGACTTGTGT-TGGA...........................................................................................................................................................................................................................................................................2111.00100010
..................................CCAACATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............................CTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................................................AAAT-TGAGTGCGATAAAGT..............................................................................................................................................................................................................................................................................................................................................1911.00100001
.......................TTCCTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..........................CTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...............................................................................................................................................................................GATAT-------G--CCGGA-TTGGATTG-------ATGA----------------------------------...............................................................................................................................................................................................2311.00100010
.................................TCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2130.67200020
..................................CCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................1940.50200110
droVir3
T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAG-CAAAAATGTGTTCGA--AATTAAATAAAA-TACGGCATTTAATGCGC---TGCTATAAGATAA-------ATGCACTGTGAAATGTG-AAAT-TAAGTGCATTGTGAGTTGAA-CTACACAA--TTGCTGTGCAGC-GCAATCATTGTGAGTGTATTGTTTGGGAAAT--------CG---------AAATTC--AACA-G-CC-AG-------ATAGGCCAGCATATTCAACCTAACCACACTTGCACGCATGCTTCGAACGCTGGTGTCTCACAATGTACACAC--TCGGAATT-----TTATT-------ATTATTATTATTATAGCAAACGGAACGTGCATTTCGCAAGCAGCACTCGGTGCCGACAACGCGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................CTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2115.005001300000000000000000000000000000000010000000000000000000000000
.......................TTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2215.005003000000000000000000000000000000001000000000000000000000001000
........................................TGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................1813.003010000000000000000000000000000000000000000000000000001000010000
...............................GCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2313.003001100000000000000000000000001000000000000000000000000000000000
..............................TGCTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2113.003002000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAACGTGCATTTCGCA............................2013.003002000000000000000000000000000000000000000000000000000000000100
............................CTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
..........................CTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000002000
........................TCCTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2412.002001000000000000000000100000000000000000000000000000000000000000
............................CTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000010000000000000000000000000
..................................CCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1812.002001000000000000000000000000000000000000000000000000000000001000
.......................TTCCTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000010010000000000000000000000000000000000000000
..........................CTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
.....................CTTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2412.002000110000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGAAATGTG-AAAT-TAAGTGCATT....................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000002000
.....................................ACATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................2112.002010000000000000000000000000000000000000000000000000000000010000
............................CTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.......................TTCCTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000100000000000000000000000000000000000000000
......................................CATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.............................TTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTGCCGACAACGCGT..2011.001000000000000000010000000000000000000000000000000000000000000000
................................CTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000010000000
..............................TGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
......................................CATGGCTGATCAGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
..........................CTCTTGCTCCAACATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000001000000000000
.........................CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
............................CTTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACGGAACGTGCATTTCGCAAGC.........................2211.001001000000000000000000000000000000000000000000000000000000000000
............................CTTGCTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
..........................CTCTTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................GC-GCAATCATTGTGAGTG..................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.............................TTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
................................CTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
...................................................GTAAGGCAG-CAAAAATGTGTTCGA--..........................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.....................CTTTCCTCTTGCTCCAACATGGCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CACAC--TCGGAATT-----TTATT-------ATTATTAT..........................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.........................CCTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................T--------CG---------AAATTC--AACA-G-CC-AG-------ATAGGCC..............................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAACGTGCATTTCGCAC...........................2311.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................ACTGTGAAATGTG-AAAT-TAA...........................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
...........................TCTTGCTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCACTCGGTGCCGACAACGCGTC.2711.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGCACTCGGTGCCGA..........1911.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCAAACGGAACGTGCATTTCGCA............................2411.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCAAGCAGCACTCG.................1811.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCGCAAGCAGCACTCGGTGCC............2811.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTATTATAGCAAACGGAAC........................................1911.001000000000000000000000000010000000000000000000000000000000000000
..........................CTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TACACAA--TTGCTGTGCAGC-GCAATCA...........................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGAACGTGCATTTCGCA............................2311.001000000000000000001000000000000000000000000000000000000000000000
.................CTTTCTTTCCTCTTGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.....................CTTTCCTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................AAAT-TAAGTGCATTGTGAGTTG............................................................................................................................................................................................................................................................................2211.001000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGAACGTGCATTTCGCAA...........................2411.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAACGTGCATTTCG..............................1811.001000000000000000001000000000000000000000000000000000000000000000
.................................TCCAACATGGCTGATCAGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTGCCGACAACGCG...1911.001000000000000000010000000000000000000000000000000000000000000000
..........................CTCTTGCTCCAACATGGCTGATCG......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAACGTGCATTTCGCAA...........................2311.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCACTCGGTGCCGACAACGCG...2511.001000000000000000000010000000000000000000000000000000000000000000
.............................TTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................TCTTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.......................................ATGGCTGATCAGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CTCACAATGTACACAC--TCGGAA.....................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................TCTTTCCTCTTGCTCCAACA................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................TTTCCTCTTGCTCCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................TTCTTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGAACGTGCATTTC...............................2011.001000000000000000000010000000000000000000000000000000000000000000
..................TTTCTTTCCTCTTGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.........................CCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAG-CAAAAATGTGTTCGA--AATTAAATAAAA-TACGTCAGTTATAGCAT---TGCTATAAAACAA-------ATTTAATGTGAAATGTG-AAATAT-GGTGCATTGTGAGTTGAG-CAATACAT--TTACTGTATA-C-CATTGA-------ATGTGTTGTTTTC------CAAA------------AAGGAGAAGCAACA-G-CG-AGT------GAGG---CTCACATTCAACCTAACCACACTTCTACGCATGCTG------------TTTACGCTGCTAAATACACTTGGAATT-----TGACT-------AT---TATTTTTGTAGCAAACAGAACGCGCATTTCGCAAGCAACACTCAGTGCCGACAATACGACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................CTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2212.002101000
..............................TGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.............................TTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2512.002100010
....................................................TAAGGCAG-CAAAAATGTGT................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
......................TTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................TCCAACATGGCTGATCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...................................................GTAAGGCAG-CAAAAATGTGTTCGA--..........................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................TTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................ATTCAACCTAACCACACTT......................................................................................................................................1911.001100000
.............................................................................................CGTCAGTTATAGCAT---TGC......................................................................................................................................................................................................................................................................................................................................1811.001000010
.......................................ATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
................................CTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................TCCTCTTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................TGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................GCAACA-G-CG-AGT------GAGG---CTG...........................................................................................................................................................1911.001000001
..........................CTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAGTGCCGACAATACGAC.2211.001100000
............................CTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..................TTTCTTTCCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................TTC------CAAA------------AAGGAGAAGCAACA-G-CG-AGT------.....................................................................................................................................................................2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................AACAGAACGCGCATTTCGCAAGC.........................2311.001100000
........................................TGGCTGATCAGGTAAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................CTTGCTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................GAACGCGCATTTCGCAAGCAACACTCAG................2811.001100000
.....................CTTTCCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................GTAAGGCAG-CAAAAATGTGTTCG.............................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.........................................GGCTGATCAGGTAAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...........................TCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................AGGTAAGGCAG-CAAAAATG...................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................TTCCTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................GCTGATCAGGTAAGGCAG-CAAAAATGTG.................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
................................CTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.............................TTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..........................CTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
T----------------CTTTCTTTCCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAC-CAAAAGTGTGTTCGA--AATTAAATAAAA-TACAGCATTTAATGCGC---TACACTATGATAC-------AACCAAAGTGAATTGTG-AAGT-TAAGTGTGTTGTGAGTACAC-CCAGACAATA-ATTTTTACAGT-ACAAGCACTGCAAGTGCATTGTTTGGCAAAG--------AC---------AAATTT--AC--------AACTCAG--CTCATCGAG--CATTCAACCTAACCAAACTTTTAGGCATGCTG--A------A--TATCTCACAACACACAC----AAAATGTGGAATAGCTATTTATTTTGA--TTGGTTGTAGCAAATGGAACGTGCGTTTTGCAAACAAAATGCGGTGCCGACAACGCGTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2013.00321
.......................TTCCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..........................CTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.............................TTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..........................CTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
...............................GCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................1820.50110
..............................TGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................1920.50110
droAna3
T----------------CTTTCTTTCTTTT--TTTCAACATGGCTGATCAGGTAAGGTTTTCAAAAACGCGTGAAC--AATA-AATGAAAATAAGGCAATGAA-GCAAGGAAATTGCGAAATGG-------AA----------------ATGTGCAAGTAAGTTATTGCTTG-C-AAATC----------AA----T-GGA----------------------------CTGGACGGTGAAATATTCTGGAAACAATT-C----C-AGG--GA-GTCAA---AGCAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACAC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGAGCCTTTCGCAAGCAGCACGCGGTGGTTGTGGTGCGCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................TCTTTT--TTTCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
................................TTTCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2212.002020000
............................TT--TTTCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
.................................................................................................................................................................................ATC----------AA----T-GGA----------------------------CTGGACGGTGAA.......................................................................................................................................................................................................2111.001010000
...........................TTT--TTTCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
......................TTTCTTTT--TTTCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................GATGCGCCCTAACCCTACTTTTGCAC................................................................................................................................2611.001010000
..........................................................................................................................................................................TG-C-AAATC----------AA----T-GGA----------------------------CTGGACGGTGA........................................................................................................................................................................................................2511.001001000
..........................TTTT--TTTCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.............................T--TTTCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................CTTTCTTTT--TTTCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
................................................................................................................................................................................AATC----------AA----T-GGA----------------------------CTGGACGGT..........................................................................................................................................................................................................1911.001000010
.....................CTTTCTTTT--TTTCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGTGGTTGTGGTGCGCC.2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACGAGCCTTTCGCAAGCAGCACGCGGTG..............2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................AACCGAACGAGCCTTTCGCAAGCAGC......................2611.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTTTCGCAAGCAGCACGC..................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGTTGTGGTGCGCC.1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGGTGGTTGTGGTGCGCC.2111.001100000
.............................T--TTTCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........................CTTTT--TTTCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..........................TTTT--TTTCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.................................TTCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTTTCGCAAGCAGCA.....................1911.001000001
.........................CTTTT--TTTCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
droBip1
T----------------CTTTCTTTCTTTT--TTTCAACATGGCTGATCAGGTAAGGTTTTTA--AAAACGCGTTAACAATA-AATGAAAATTAGGCGAGGAA-GCCTGGAAAAAGCGAAATGGGAACGGAAGA----GTGAGTGATT-GCTTG-------CAAATCAATGGAC-CGGAC----------TG----T-GAA----------------------------ATATC------------TAGCAAACAACT-G----A-AGG--GA-GTCAG---AGAAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACAC----GA--------------------AAT---GTATATTCCAGCAAACTGAACGAGCTTTTCGCAAGCAGCACGCGGTTGTTGTGGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------CTTTCCTCTTTCAACAACATGGCTGATCAGGTAAGATTC-CACGACAATGTGTAA--AATA-AATGAAA-TACGCGGCCTAAACCAC---GGATGCAAAATGA-------AAAGAGACAGCCAAAGAGGTTTGTAAGTGAGACGTGA-TGGATGGAAGC----------GA----T-GGA----------------------------AAGGC------------CGGGACACCGAGCG-G-CAGCCAACAA-TTCGC---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------CCTCAAATAGTGTACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTTGTGGTGCGACGSizeHit CountTotal NormTotal
No Reads
droFic1
T--------------TTCTTTCTTTCTTTTTCCATCAACATGGCTGATCAGGTAGGATTT-CGCTACGGCGTGCTA--ACTA-AATGAAA-TAGGCGTAAAAAACGGC---GGACAAATAACCA-------ACACACGATGACGGAGG-CCGTATAAGTGAGCTGTAGGTGAAC-GCGAC----------GC----C-GGA----------------------------GAAGC------------GATGGGCCACCTAG-G-AG-TGAACCA-TCTAG---AGCAGCCTCACCCTAACCCCACTTTAGCGCATGGTG------------TCTCCAGTAGTGAAC-C----AA--------------------ATT---GTATGTTGCAGCAAACCGAGCGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droEle1
C----------------C--TCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGAATA-C-CGAGAGTTCGTTG--AAAT-AGTGAAA-TACGCTGCTTAAACAAC---GGTTGGAGATTCC-------GGACAAAGTGCCAGAGG-CCTTGTAAGTGAGCTGTTGCTGGAC-GAACC----------AG----A-GGA----------------------------GGTGT------------CAGGAATCGACCCA-G-CAAGACAGAA-TCCGG---AGCAGCCTCGACCTAACCCCACTTTAGCGCATGGTG------------TCGCACGTAGTGAACTC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGCGCGTTCCGCAAGCAGCACGCGGTGGTCGTTGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droRho1
C------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CCAGAGAGTGAGCTA--AATA-AATGAAA-TACGCATGTTAAACGGC---GGATGGAGTCCCG-------AAACAAGATGCCAGAGG-CGGTGTAAGTGAGATGTGGGTGAAC-AAATC----------AC----T-GGA----------------------------GGAGC------------CATGAATCGCCTGC-T-CGGGCCACAG-TTTGG---AGCAGCTTCGCCCTAACCCTACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGTCGSizeHit CountTotal NormTotal
No Reads
droBia1
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CATGAGGAAGTGCTT--AATA-AATGAAA-TTCGCGGGTTAAACGAC---GGTTGCAAACCCG-------AAACAAGATGCCAAGGG-AAGTGTAAGTGAGATGTGACTGGAC-GAACC----------GC----T-GGC----------------------------GGGCA------------AGAGGAACACCCTGAG-GA-AAGGCAT-TCCAG---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CATGAGGAAGTGCTT--AATA-AATGAAA-TACGCGGCTTAAACGTC---GCATGCAGACCCG-------AAACAAGATGCCACGGG-GAGTGTAAGTGACGCACGAGTGGAT-GAACC----------GC----C-GCA----------------------------GGAGA------------AGCGAAACCGCCTG-GGCGCCACACAA-CCCGA---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCAAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTCGTTGTGCGTCGSizeHit CountTotal NormTotal
No Reads
droEug1
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGATTGTGCTT--AATA-AATGAAA-TACGCGCGTTAAACGGC---GGATGGAGACACA-------AAACATGTTGCCCGAGG-ACTTGTAAGTGAGATATGAGTGGAC-CAATT----------CG----T-GAC----------------------------GGAGC------------GAGGAAACTCCATA-G-AA-GCCAAAA-CTCAA---ACCAACCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACTGAACGCGCGTTCCGCAAACAACATGCTGTTGTCGTTGTGCGTCGSizeHit CountTotal NormTotal
No Reads
dm3
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGTTAAACGGC---TGATGCGAACCCG-------CAACAAGATGCCCTCTG-AAGTGTAAGTGACCAGTGAATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GAACAAACGCACTG-G-GA-AGCGTAG-CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GAAATG-----------------AT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTTGTGCGTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................181129.00129000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000001000000000000000000000000000000000000000300000010000000000000003210000000000100020000100000001000100101001212200541100100000000011033000310010014140110004330224020114004210221112010
..........................................GCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................18133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000120110000002000000000000000200100002110001001000000510000000000000010220110000
...................................................GTAAGATTC-CACGAGAGTGTGCTA--AA........................................................................................................................................................................................................................................................................................................................................................................26120.00200000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000050000001000000000000010302010000000000000000000000000000100000000000000000000000000000000000000011000000100000000000000000001000000
........................................TGGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................20118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000110100000000000001000000001001400140000000000001100
..........................................GCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................19115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000101000000010000000000000000000010000000001000000020000002001000000000110000
..........................CTTTTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................23112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001500000000000000000000000010000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000
.................................................................................................................................................................................ACC----------TA----T-GGA----------------------------GCAGC------------GAACAAAC..........................................................................................................................................................................................22111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020201400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................CTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000010000000000000000000000000001000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010102000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000
....................................AACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................22110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000100200210000000000000110
............................................................................................................................................................................................................................................................................................................................................................................................TATATTGCAGCAAACCGAACGCTCGT..................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000010100200000000000000100
...............................TCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000101200000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................GTAAGATTC-CACGAGAGTGTGC..............................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040001000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000
.........................................GGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110301010000000000000010
................................................................................TA-AATGAAA-TACGCGGGTTAAACGGC---.........................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000100000
..........................................GCTGATCAGGTAAGATTC-CA.........................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000120000000000000000000000000
.........................CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010002000000002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000000000000000000000000000000000000100000100000000000010000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACGCGGTGGTCGTTGTGCGTC.2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GTAAGATTC-CACGAGAGTGTGCT.............................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000010000000200000000000000000000000000
.................................ATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000040000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GTAAGTGACCAGTGAATGGAT-GAACC----------..........................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000001000000000100000000000000000000000
.............................TTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................GTAAGATTC-CACGAGAGTGTGCTA--AAT.......................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000010000101000000000000000000100000
.................................ATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTTTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GTAAGATTC-CACGAGAGTGT................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..........................................GCTGATCAGGTAAGATTC-CACGAGAG...................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000010000000001000000000000000000000100
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....................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGGTCGTTGTGCGT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TAAACGGC---TGATGCGAACCCG-------.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................TTTCCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCACTG-G-GA-AGCGTAG-C.....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................TAAACGGC---TGATGCGAACCCG-------CAACATC..............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGTGGTCGTTGTGCGT..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GTGACCAGTGAATGGAT-GAACC----------TA----....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAACAAGATGCCCTCTG-AAG................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
...................................CAACATGGCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCGAACGCTCGTTCCGCA............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TG-----------------AT---GTATATTGCAGCAAACCGAACGCT.....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTTTCCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CCCG-------CAACAAGATGCCCTCTG-AAGTG..............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AGTGACCAGTGAATGGAT-G........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................CATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGCTAAACGGC---TCATACGAGCCCG-------CAACAAGATGCCCTCTA-AAGTGTAAGTGACCAGTGAATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GGGCAAACGCCCTG-G-GA-GGCGCAA-CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GAAATG-----------------AT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................18130.0030168400000001100000
.........................................GGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................1914.00422000000000000000
...........................TTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1813.00303000000000000000
..........................................GCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................1813.00320000000001000000
............................TTTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2113.00300300000000000000
.....................................ACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2113.00330000000000000000
........................TCCTTTTTCATCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2913.00300020010000000000
..............................TTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000000000
..................................................................................................................................................TA-AAGTGTAAGTGACCAGTGAATGGA...........................................................................................................................................................................................................................................................................2612.00200000001100000000
..........................................GCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
........................................TGGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
...........................TTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2012.00200110000000000000
........................................TGGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000000000
......................TTTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
........................................TGGCTGATCAGGTAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................1821.50330000000000000000
...................................................GTAAGATTC-CACGAGAGTGTGCTA--AAT.......................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
....................................AACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...........................TTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
..........................CTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...........................TTTTTCATCAACATGGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
....................................AACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
.......................................ATGGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................TCCTTTTTCATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.............................TTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.........................CCTTTTTCATCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
....................................................TAAGATTC-CACGAGAGT..................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...............................................................................................................TCATACGAGCCCG-------CAACAAGATGCCC........................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.............................TTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................TTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
................................................................................TA-AATGAAA-TACGCGGGT....................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
....................TCTTTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.....................................ACATGGCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.....................CTTTCCTTTTTCATCAACATGGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.........................................GGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
........................................................................................................................................................................................................................................GC------------GGGCAAACGCCCTG-G-GA-GGCG..........................................................................................................................................................................2311.00100000000000100000
................................................CAGGTAAGATTC-CACGAGAGTGT................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
........................................................................................................................................................TGTAAGTGACCAGTGAATGGA...........................................................................................................................................................................................................................................................................2111.00100000001000000000
....................................AACATGGCTGATCAGGTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
......................................................................................................................................................................................................GGA----------------------------GCAGC------------GGGCAAACGCCCTG-G-GA-..............................................................................................................................................................................2511.00100000000001000000
............................TTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
.....................CTTTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
....................................AACATGGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
............................TTTTCATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
............................TTTTCATCAACATGGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
........................TCCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGCAACACGCGGTGGTCGTA........2711.00100000010000000000
.............................TTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................GCTGATCAGGTAAGATTC-CAC........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000000000
.................................ATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2150.40200200000000000000
droSec2
T----------------TGTTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGTTAAACGGC---TCATACGAGCCCG-------CAACAAGATGCCCTCTA-AAGTGTAAGTGCCTAGTGAATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GGGCAAACGCCATG-G-GA-AGCGAAA-CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GAAATG-----------------AT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAAAACGCGGTGGTCGTAGTGCGTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................18117.00170089
..........................................GCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................1913.0031011
.....................................ACATGGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................2313.0030201
..........................................GCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................1812.0020011
........................................TGGCTGATCAGGTAAGATTC-CAC........................................................................................................................................................................................................................................................................................................................................................................................2312.0020101
..........................................................................................................................................................TAAGTGCCTAGTGAATGGAT-G........................................................................................................................................................................................................................................................................2112.0020002
................................CATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................GTTCTTTCCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
......................................CATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................ATCAACATGGCTGATCAGGTAA.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.................................ATCAACATGGCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
........................................................................................................................................................................ATGGAT-GAACC----------TA----T-GGA----------------------------GCAGC------------GGGC..............................................................................................................................................................................................2611.0011000
..........................................GCTGATCAGGTAAGATTC-CACGAGAG...................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
.............................TTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.................................ATCAACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
...................................................GTAAGATTC-CACGAGAGTGTGCT.............................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....................................................TAAGATTC-CACGAGAGTGTGCTA--AAT.......................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.................................ATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
............................................................................................................................................................................AT-GAACC----------TA----T-GGA----------------------------GCAGC------------GGGC..............................................................................................................................................................................................2211.0010010
...........................................................................................................................................................................GAT-GAACC----------TA----T-GGA----------------------------GCAGC------------..................................................................................................................................................................................................1911.0010010
....................................AACATGGCTGATCAGGTAAG................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..............................................ATCAGGTAAGATTC-CACGAGAGTG.................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.....................................ACATGGCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.................................ATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.....................................ACATGGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.......................TTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
..............................TTCATCAACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.........................................GGCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................ATCAACATGGCTGATCAGGTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
..........................................................................................................................................................TAAGTGCCTAGTGAATGGAT-GAACC----------..........................................................................................................................................................................................................................................................2511.0010100
....................................................................................................................................AACAAGATGCCCTCTA-AAGT...............................................................................................................................................................................................................................................................................................2011.0010010
...........................TTTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
......................................CATGGCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.........................CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................TAAGATTC-CACGAGAGTGTGCTA--AA........................................................................................................................................................................................................................................................................................................................................................................2511.0010001
....................................AACATGGCTGATCAGGTAAGATTC-CA.........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
......................................................................................................................................................................................................................................................................................................................GCATGGTG------------TCGCCAATAGTGA.................................................................................................2111.0010001
............................................TGATCAGGTAAGATTC-CACGAGAGTG.................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
....................................AACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
....................................AACATGGCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
................................................CAGGTAAGATTC-CACGAGAG...................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.......................TTCCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
......................................................AGATTC-CACGAGAGTGTGCT.............................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..........................................................................................................................................................TAAGTGCCTAGTGAATGGAT-GAACC----------TA----....................................................................................................................................................................................................................................................2711.0010010
................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2230.3311000
.................................ATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2160.1710100
droYak3
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTG--AATA-AATGAAA-TACGCGGGTTAAACGGC---GGATGCAAAGCCG-------AAGCAAAATGCCCGATG-AGGTGTAAGTGACGAGTGAGTGGAC-AAACC----------TA----T-GGA----------------------------ATAGC------------GAGCAAAAGCCCTG-G-GA-AGCGCAG-CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................TTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2414.00403100000000
........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................1813.00320010000000
.........................CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2012.00201000010000
......................TTTCCTTTTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2712.00201100000000
...............................................................................................................................................................................................................................................................................AG-CCTGG---ACCAGCTTCGCCC.................................................................................................................................................2011.00100100000000
....................................................................................................................................AGCAAAATGCCCGATG-AGGTGTAAG..........................................................................................................................................................................................................................................................................................2511.00100010000000
.......................TTCCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................TTTTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGGTCGTAGTGCGTCG2011.00100000010000
........................TCCTTTTTCATCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
......................................................................................................................................................................................................................................................................................G---ACCAGCTTCGCCCTAACCCCA.........................................................................................................................................2211.00100000010000
............................TTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............................TCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
....................................................................................................................................................................GTGAGTGGAC-AAACC----------TA----T-G.................................................................................................................................................................................................................................................1911.00100000010000
............................TTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
............................TTTTCATCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GAACGCTCGTTCCGCAAGC.........................1911.00100100000000
...........................TTTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.....................................ACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
......................TTTCCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....................CTTTCCTTTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
..........................CTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
......................TTTCCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
...........................................CTGATCAGGTAAGATTC-CACGAGAGT..................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
........................TCCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
-------------------TTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTC-CACGAGAGTGTGCTA--AATA-AATGAAA-TACGCGGGTTAAACGGC---GGATGCGAAGCCG-------AAACAAGATGCCCGATG-ATGTGTAAGTGACGAGTGAGTGGAC-ACACC----------CA----T-GGA----------------------------GTAGC------------AAGCAATCGCCCTG-G-GA-AGCGCAG-CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACAC----GA--------------------AAT---GTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCTGTGGTTGTTGTGCGTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................TCCTTTTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2712.0022000000
.......................TTCCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2212.0021100000
...........................TTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1812.0021000010
................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2212.0022000000
........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
....................................................................................................................................AACAAGATGCCCGATG-ATGT...............................................................................................................................................................................................................................................................................................2011.0010000100
..........................CTTTTTCATCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..........................CTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.......................TTCCTTTTTCATCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001
..........................................GCTGATCAGGTAAGATTC-C..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....................CTTTCCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............................TTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
..........................................GCTGATCAGGTAAGATTC-...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................ATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.........................................GGCTGATCAGGTAAGATTC-CAC........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.............................TTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................................................................................................................................................................................CCTGG---ACCAGCTTCGCCCTAACCCCACT.......................................................................................................................................2811.0011000000
.......................TTCCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
................................CATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.......................................................................................................................................AAGATGCCCGATG-ATGTGTAAGT.........................................................................................................................................................................................................................................................................................2311.0010001000
.................................ATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
..........................CTTTTTCATCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
............................TTTTCATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...............................................................................................................................................................................................................................................................................AG-CCTGG---ACCAGCTTCGCCCT................................................................................................................................................2111.0010001000
...........................TTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
...........................................................................................................................................................................................................................................................................................................................................CGCCAATAGTGAACAC----GA--------------------...................................................................1811.0010001000
...................................CAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................1870.1410100000

Generated: 05/17/2015 at 11:46 PM