ID:

dps_974

 Coordinate:

3:2576884-2576947 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.9 -6.7 -6.5

Flybase annnotation

exon [dpse_GLEANR_14807:1]; CDS [Dpse\GA24505-cds]; exon [dpse_GLEANR_14807:2]; CDS [Dpse\GA24505-cds]; intron [Dpse\GA24505-in]

No Repeatable elements found

mature
  1. dps_1913  Unknown_group_260:64000-64024 -
  2. dps_974  3:2576894-2576918 -
  3. dps_1149  3:10682313-10682337 -
  4. dps_1313  3:19097691-19097715 +
star

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
CAGGTTTCAACCTCGATGGCTCCAATTTCAATTACCTGCACATGAAGCTGGTAAGTAAATACATATATTATGTTATTCATATATTTATGTATAAACATAACCATTATTTCACAGGCCATGGTTGAGGCTAAGATAATGGGATCTGAGGAGATAGATGACAGTCT
*****************************************************.((..(((((((...((((.....))))....)))))))..))........************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 SRR902010
ovaries
 SRR902012
CNS imaginal disc
 M059
embryo
 GSM444067
head
 M062
head
 GSM343916
embryo
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGA.................. 25 0 1 51.00 51 51 0 0 0 0 0 0 0 0
................................................TGGTAAGTAAATACATATATTATGT........................................................................................... 25 0 1 33.00 33 27 4 1 0 0 0 1 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAGA......... 27 0 3 30.00 90 75 9 2 4 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATA........... 25 0 3 28.00 84 70 4 2 8 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTG................... 24 0 1 14.00 14 13 1 0 0 0 0 0 0 0
........................................................................................................TATTTCACAGGCCATGGTTGAGG..................................... 23 0 1 11.00 11 5 4 2 0 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAG................. 26 0 1 8.00 8 5 3 0 0 0 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGA.................. 24 0 1 8.00 8 7 1 0 0 0 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAG................. 25 0 1 7.00 7 4 3 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGAC..... 26 0 3 6.33 19 16 1 0 1 1 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAGG................ 26 0 1 6.00 6 1 5 0 0 0 0 0 0 0
.......................................................................................................TTATTTCACAGGCCATGGTTGAGG..................................... 24 0 1 6.00 6 2 1 3 0 0 0 0 0 0
........................................................................................................TATTTCACAGGCCATGGTTGAGGC.................................... 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGT.. 26 0 4 4.25 17 17 0 0 0 0 0 0 0 0
......................................................................................................................TGGTTGAGGCTAAGATAATGGG........................ 22 0 1 4.00 4 2 2 0 0 0 0 0 0 0
...........................................GAAGCTGGTAAGTAAATACATATAT................................................................................................ 25 0 2 4.00 8 8 0 0 0 0 0 0 0 0
.......................................................................................................TTATTTCACAGGCCATGGTTGAGGC.................................... 25 0 1 4.00 4 3 0 1 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATG....... 24 0 3 4.00 12 7 2 0 2 0 0 1 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGTC. 27 0 4 4.00 16 12 0 0 4 0 0 0 0 0
......................................................................................................................TGGTTGAGGCTAAGATAATGGGATCTGA.................. 28 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAGGA............... 27 0 1 4.00 4 2 1 1 0 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGG........................ 19 0 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGA............. 23 0 3 3.67 11 10 0 1 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGA...... 25 0 3 3.67 11 9 1 0 1 0 0 0 0 0
....................................................................................................................CATGGTTGAGGCTAAGATAATGGGATC..................... 27 0 1 3.00 3 1 0 0 0 2 0 0 0 0
.........................................................................................TATAAACATAACCATTATTTCACAGGCC............................................... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...............................................CTGGTAAGTAAATACATATATTATGT........................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGATC..................... 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAG.......... 26 0 3 2.67 8 6 0 1 1 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGA......... 22 0 3 2.67 8 7 1 0 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGACA.... 24 0 4 2.25 9 8 1 0 0 0 0 0 0 0
......................................................................................................................TGGTTGAGGCTAAGATAATGGGAT...................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.......................................................................................................TTATTTCACAGGCCATGGTTGAG...................................... 23 0 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGAC..... 23 0 4 2.00 8 8 0 0 0 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAGG................ 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.............................................................................................................................GGCTAAGATAATGGGATCTGAGGA............... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGAT............ 24 0 3 2.00 6 4 1 0 1 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGA....................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.....................................................................................................................ATGGTTGAGGCTAAGATAATGGGA....................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TAACCATTATTTCACAGGCCATGG........................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAGGA............... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................................................................................TCACCACCATTATTTCACAGGCCATGG........................................... 27 3 1 2.00 2 0 0 1 0 0 1 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGAT...................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGATCTG................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGAT........ 23 0 3 2.00 6 6 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAGT................ 26 1 1 2.00 2 1 1 0 0 0 0 0 0 0
......................................................................................................................TGGTTGAGGCTAAGATAATGGGATC..................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................CATGGTTGAGGCTAAGATAATGGGA....................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................GTTGAGGCTAAGATAATGGGATCTGA.................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................TTATTTCACAGGCCATGGTTG........................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGG................ 20 0 3 1.67 5 4 0 0 1 0 0 0 0 0
...........................................GAAGCTGGTAAGTAAATACATATATC............................................................................................... 26 1 2 1.50 3 3 0 0 0 0 0 0 0 0
........................................................................................................TATTTCACAGGCCATGGTTGAGGA.................................... 24 1 4 1.25 5 0 0 5 0 0 0 0 0 0
.....................................................................................................................ATGGTTGAGGCTAAGATAATGGG........................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATC....... 24 1 3 1.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................................GCTAAGATAATGGGATCTGAGGAGATA........... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TGGTAAGTAAATACATATATTATGTTT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................TAAACATAACCATTATTTCACAGGCC............................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.............................................................................................................CACAGGCCATGGTTGAGGCTAAGA............................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................TATATTTATGTATAAACATAACCAT............................................................ 25 0 4 1.00 4 3 0 1 0 0 0 0 0 0
........................................................................................................TATTTCACAGGCCATGGTTGA....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGTTGAGGCTAAGATAATGGGATC..................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................TTCACAGGCCATGGTTGAGG..................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................AGTAAATACATATATTATGT........................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAGAA............... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGGCTAAGATAATGGGAT...................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................TATTTCACAGGCCATGGTTGAG...................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GTTGAGGCTAAGATAATGGGA....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TGGTAAGTAAATACATATAGTATGT........................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TGGTAAGTAAATACATATATTATGTTAT........................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TGGTAAGTAAATACATATATTATG............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTCAGGCTAAGATAATGGGATT..................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................TAACCATTATTTCACAGGCCATGGTT......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................GAGGCTAAGATAATGGGATCTGAGGA............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TGGTTGAGGCTAAGATAATGG......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................TGTTATTCATATATTTATGTATAAACA................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................TTTCAATTACCTGCACATGAAGCT................................................................................................................... 24 0 5 0.80 4 4 0 0 0 0 0 0 0 0
.........................................................................TATTCATATATTTATGTATAAACA................................................................... 24 0 4 0.75 3 3 0 0 0 0 0 0 0 0
............................................................................................................TCACAGGCCATGGTTGAGGATAAGA............................... 25 1 4 0.75 3 0 0 3 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGA...... 22 0 4 0.75 3 3 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGACTT... 28 2 3 0.67 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATA........... 20 0 3 0.67 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAG.......... 21 0 3 0.67 2 2 0 0 0 0 0 0 0 0
......TCAACCTCGATGGCTCCAATTTCAAT.................................................................................................................................... 26 0 5 0.60 3 3 0 0 0 0 0 0 0 0
................................................TGGTAAGTAAATACATATATTATC............................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................GAAGCTGGTAAGTAAATACA..................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................TGAAGCTGGTAAGTAAATACATATA................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................TCACAGGCCATGGTTGAGGATAAG................................ 24 1 4 0.50 2 0 1 1 0 0 0 0 0 0
...........................................GAAGCTGGTAAGTAAATACATATA................................................................................................. 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................TTTCAATTACCTGCACATGAAGCTGGG................................................................................................................ 27 1 4 0.50 2 2 0 0 0 0 0 0 0 0
...........................................GAAGCTGGTAAGTAAATACATATATTA.............................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................ATGAAGCTGGTAAGTAAATACATATAT................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................TGAAGCTGGTAAGTAAATACAT.................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......TCAACCTCGATGGCTCCAATTTC....................................................................................................................................... 23 0 5 0.40 2 1 0 1 0 0 0 0 0 0
....................TCCAATTTCAATTACCTGCACATGAAGC.................................................................................................................... 28 0 5 0.40 2 0 0 1 0 0 1 0 0 0
......TCAACCTCGATGGCTCCAATTTCA...................................................................................................................................... 24 0 5 0.40 2 2 0 0 0 0 0 0 0 0
.......................................................................................TGTATAAACATAACCATTATTTCACAGG................................................. 28 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.........................................................................................TATAAACATAACCATTATTTCACAGG................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGATCTGAGGAGATAGATGACAA... 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................AATGGGATCTGAGGAGATAGA......... 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................ATTGGAACTGAGGAGATAAATG....... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................TAAGATGGGATCTGAGGAGATA........... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGAA........ 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAGAAA....... 29 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTGAGGTTAAGATAATGGGATCTGA.................. 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................CTGCACATGAAGCTGGTAAGTAAATAC...................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................ATAAACATAACCATTATTTCACAGG................................................. 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGA............... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGC......... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGATCTGAGGAGATAGATGACA.... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGATCTGAGGAGATAGATG....... 22 0 3 0.33 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGC...... 25 1 3 0.33 1 0 0 0 0 0 1 0 0 0
................................................................................................................................TAAGATAATGGGGTCTGAGGAGATAGA......... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................................................................................ACCATTATTTCACAGG................................................. 16 0 3 0.33 1 0 0 0 0 1 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATC........... 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAA.......... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGGGGAGATA........... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGACT.... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATGGGATCTGAGGAGAA............ 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAGATG....... 29 0 3 0.33 1 0 1 0 0 0 0 0 0 0
................................................................................................................................TAAGATAATGGGATCTGAG................. 19 0 3 0.33 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CAAGATAATGGGATCTGAGGAGATAG.......... 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................AAGATAATGGGATCTGAGGAGATAGA......... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................AATGGGATCTGAGGAGATAGATGAC..... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGA......... 19 0 4 0.25 1 0 1 0 0 0 0 0 0 0
..........................................................................................................TTTCACAGGCCATGGTTGAGGATAAG................................ 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0
.........................................................................TATTCATATATTTATGTATAAACATAACCA............................................................. 30 0 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGTCA 28 1 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................................................TATATTTATGTATAAACATAACCA............................................................. 24 0 4 0.25 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGTCC 28 1 4 0.25 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAAAA........ 20 2 4 0.25 1 0 0 1 0 0 0 0 0 0
.......................................................................................................TTATTTCACAGGCCATGGTTGAGGA.................................... 25 1 4 0.25 1 0 0 1 0 0 0 0 0 0
........................ATTTCAATTACCTGCACATGAAGCTGG................................................................................................................. 27 0 4 0.25 1 0 0 1 0 0 0 0 0 0
.........................................................................TATTCATATATTTATGTATAAACATAA................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGGGATCTGAGGAGATAGATGCCAGT.. 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0
.........................TTTCAATTACCTGCACATGAAGA.................................................................................................................... 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0
............................CAATTACCTGCACATGAAGCT................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 1
..................GCTCCAATTTCAATTACCTGC............................................................................................................................. 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0
......TCAACCTCGATGCCTCCAATTTCAAT.................................................................................................................................... 26 1 5 0.20 1 0 0 0 0 0 1 0 0 0
........................ATTTCAATTACCTGCACATGAAGC.................................................................................................................... 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0
.....................CCAATTTCAATTACCTGCACATGA....................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0
....................TCCAATTTCAATTACCTGCACATGA....................................................................................................................... 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0
......TCAACCTCGATGGCTCCAATTT........................................................................................................................................ 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0
.....TTCAACCTCGATGGCTCCAATTTCAA..................................................................................................................................... 26 0 5 0.20 1 0 0 1 0 0 0 0 0 0
....TTTCAACCTCGATGGCTCCAATTTC....................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0
CAGGTTTCAACCTCGATGGCTCCAATT......................................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.............................................................................................................CACAGGCCATGGTTGAGGAAAA................................. 22 2 6 0.17 1 0 0 0 0 0 0 0 0 1
.............................................................................................................CACAGGCCATGGTTGAGGATA.................................. 21 1 6 0.17 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTCCAAAGTTGGAGCTACCGAGGTTAAAGTTAATGGACGTGTACTTCGACCATTCATTTATGTATATAATACAATAAGTATATAAATACATATTTGTATTGGTAATAAAGTGTCCGGTACCAACTCCGATTCTATTACCCTAGACTCCTCTATCTACTGTCAGA
************************************************************.((..(((((((...((((.....))))....)))))))..))........***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 V112
male body		 GSM343916
embryo
 M059
embryo
 SRR902010
ovaries
...........................................................................................................AAGTGTCCGGTACCAACTCCGATT................................. 24 0 1 3.00 3 3 0 0 0 0 0
...............................................................................................................GTCCGGTACCAACTCCGATTCTATTAC.......................... 27 0 1 2.00 2 2 0 0 0 0 0
..........GGAGCTACCGAGGTTAAAGTTAAT.................................................................................................................................. 24 0 5 1.20 6 0 2 3 1 0 0
........................................................................AATAAGTATATAAATACATATTTGTAT................................................................. 27 0 3 1.00 3 3 0 0 0 0 0
.................................................................................................GGTGGTAATAAAGTGTCCGGTAC............................................ 23 2 1 1.00 1 1 0 0 0 0 0
.....................................CGTGTACTTCGACCATTCATT.......................................................................................................... 21 0 4 0.75 3 2 0 0 1 0 0
.........................................................................................ATATTTGTATTGGTAATAAAGTGT................................................... 24 0 4 0.50 2 2 0 0 0 0 0
..................................GGACGTGTACTTCGACCATTCATTTAT....................................................................................................... 27 0 4 0.50 2 0 2 0 0 0 0
..........................................................................................................AAAGTGTCCGGTACCAACTCCTATT................................. 25 1 4 0.50 2 2 0 0 0 0 0
..................................GGACGTGTACTTCGACCATTCATT.......................................................................................................... 24 0 4 0.50 2 0 1 0 0 0 1
...................................GACGTGTACTTCGACCATTCATT.......................................................................................................... 23 0 4 0.50 2 2 0 0 0 0 0
........................................................................................................AAAAAGTTTCCGGTAGCAACTC...................................... 22 3 2 0.50 1 0 1 0 0 0 0
..................................GGAGGTGTACTTCGACCATTCATT.......................................................................................................... 24 1 4 0.25 1 0 1 0 0 0 0
.............................TTAATGGAGGTGTACTTCGACCAT............................................................................................................... 24 1 4 0.25 1 0 0 1 0 0 0
............................................................................AGTATATAAATACATATTTGTAT................................................................. 23 0 4 0.25 1 1 0 0 0 0 0
......................................GTGTACTTCGACCATTCATTT......................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0
...........................................................................AAGTATATAAATACATATTTGTATTGGT............................................................. 28 0 4 0.25 1 1 0 0 0 0 0
.......GTTGGAGCTACCGAGGTTAA......................................................................................................................................... 20 0 5 0.20 1 0 1 0 0 0 0
..................CGAGGTTAAAGTTAATGGACGTGT.......................................................................................................................... 24 0 5 0.20 1 0 0 1 0 0 0
.........TGGAGCTACCGAGGTTAAAGTTAGT.................................................................................................................................. 25 1 5 0.20 1 0 0 0 0 1 0
GTCCAAAGTTGGAGCTACCTA............................................................................................................................................... 21 1 5 0.20 1 0 0 0 0 1 0
..........GGAGCTACCGAGGTTAAAGT...................................................................................................................................... 20 0 5 0.20 1 0 1 0 0 0 0
..CCAAAGTTGGAGCTACCGAGGTTAAAGT...................................................................................................................................... 28 0 5 0.20 1 0 1 0 0 0 0
.................CCGAGGTTAAAGTTAATGGACGTGT.......................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0
..CCAAAGTTGGAGCTACCGAGGT............................................................................................................................................ 22 0 5 0.20 1 0 0 1 0 0 0
.................CCGAGGTTAAAGTTAATGGACGT............................................................................................................................ 23 0 5 0.20 1 0 1 0 0 0 0
................ACCGAGGTTAAAGTTAATGGACGTGT.......................................................................................................................... 26 0 5 0.20 1 0 1 0 0 0 0
...........GAGCTACCGTGGTGAAATT...................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:2576834-2576997 - dps_974 CAGGTTTCAACCTCGATGGCTCCAATTTCAATTACCTGCACATGAAGCTGGTAAGTAAATACATATATTATGTTATTCATATATTTATGTATAAACATAACCATTATTTCACAGGCCATGGTTGAGGCTAAGATAATGGGATCTGAGGAGATAGATGACAGTCT
droPer2 scaffold_6:31991-32154 + CAGGTTTCAACCTCGATGCCTCCAATTTCAATTACCTGCACATGAAGCTGGTAAGTAAATACATATATTATATTATTCATATATTTATGTATAAACATAACCATTATTTCACAGGCCATGGTTGAGGATAAGATAATGGGATCTGAGGAGATAGATGACAGTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CAGGTTTCAACCTCGATGGCTCCAATTTCAATTACCTGCACATGAAGCTGGTAAGTAAATACATATATTATGTTATTCATATATTTATGTATAAACATAACCATTATTTCACAGGCCATGGTTGAGGCTAAGATAATGGGATCTGAGGAGATAGATGACAGTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGA..................25151.005100000000510
................................................TGGTAAGTAAATACATATATTATGT...........................................................................................25133.003301000140270
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAGA.........27330.009002000094750
................................................................................................................................TAAGATAATGGGATCTGAGGAGATA...........25328.008402000048700
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTG...................24114.001400000010130
........................................................................................................TATTTCACAGGCCATGGTTGAGG.....................................23111.00110200004050
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAG.................2618.0080000003050
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGA..................2418.0080000001070
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAG.................2517.0070000003040
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGAC.....2636.331900000011161
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAGG................2616.0060000005010
.......................................................................................................TTATTTCACAGGCCATGGTTGAGG.....................................2416.0060300001020
........................................................................................................TATTTCACAGGCCATGGTTGAGGC....................................2415.0050000000050
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGT..2644.251700000000170
......................................................................................................................TGGTTGAGGCTAAGATAATGGG........................2214.0040000002020
...........................................GAAGCTGGTAAGTAAATACATATAT................................................................................................2524.0080000000080
.......................................................................................................TTATTTCACAGGCCATGGTTGAGGC....................................2514.0040100000030
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATG.......2434.00120000012270
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGTC.2744.001600000004120
......................................................................................................................TGGTTGAGGCTAAGATAATGGGATCTGA..................2814.0040000000040
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAGGA...............2714.0040100001020
.........................................................................................................................TTGAGGCTAAGATAATGGG........................1914.0040000001030
................................................................................................................................TAAGATAATGGGATCTGAGGAGA.............2333.671101000000100
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGA......2533.67110000001190
....................................................................................................................CATGGTTGAGGCTAAGATAATGGGATC.....................2713.0030000000012
.........................................................................................TATAAACATAACCATTATTTCACAGGCC...............................................2813.0030000000030
...............................................CTGGTAAGTAAATACATATATTATGT...........................................................................................2613.0030000000030
.........................................................................................................................TTGAGGCTAAGATAATGGGATC.....................2213.0030000002010
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAG..........2632.6780100000160
.....................................................................................................................................TAATGGGATCTGAGGAGATAGA.........2232.6780000001070
........................................................................................................................................TGGGATCTGAGGAGATAGATGACA....2442.2590000001080
......................................................................................................................TGGTTGAGGCTAAGATAATGGGAT......................2412.0020000001010
.......................................................................................................TTATTTCACAGGCCATGGTTGAG......................................2312.0020100000010
........................................................................................................................................TGGGATCTGAGGAGATAGATGAC.....2342.0080000000080
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAGG................2712.0020000002000
.............................................................................................................................GGCTAAGATAATGGGATCTGAGGA...............2412.0020000000020
................................................................................................................................TAAGATAATGGGATCTGAGGAGAT............2432.0060000001140
.........................................................................................................................TTGAGGCTAAGATAATGGGA.......................2012.0020000001010
.....................................................................................................................ATGGTTGAGGCTAAGATAATGGGA.......................2412.0020000000020
.................................................................................................TAACCATTATTTCACAGGCCATGG...........................................2412.0020000000020
.........................................................................................................................TTGAGGCTAAGATAATGGGATCTGAGGA...............2812.0020000002000
.........................................................................................................................TTGAGGCTAAGATAATGGGAT......................2112.0020000002000
..........................................................................................................................TGAGGCTAAGATAATGGGATCTG...................2312.0020000000020
.....................................................................................................................................TAATGGGATCTGAGGAGATAGAT........2332.0060000000060
..........................................................................................................................TGAGGCTAAGATAATGGGATCTGAGT................2612.0020000001010
......................................................................................................................TGGTTGAGGCTAAGATAATGGGATC.....................2512.0020000000020
....................................................................................................................CATGGTTGAGGCTAAGATAATGGGA.......................2512.0020000000020
........................................................................................................................GTTGAGGCTAAGATAATGGGATCTGA..................2612.0020000000020
.......................................................................................................TTATTTCACAGGCCATGGTTG........................................2112.0020000000020
................................................................................................................................TAAGATAATGGGATCTGAGG................2031.6750000000140
...........................................GAAGCTGGTAAGTAAATACATATATC...............................................................................................2621.5030000000030
........................................................................................................TATTTCACAGGCCATGGTTGAGGA....................................2441.2550500000000
.....................................................................................................................ATGGTTGAGGCTAAGATAATGGG........................2311.0010000000010
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATC.......2431.0030000000030
..............................................................................................................................GCTAAGATAATGGGATCTGAGGAGATA...........2711.0010000000010
................................................TGGTAAGTAAATACATATATTATGTTT.........................................................................................2711.0010000000010
...........................................................................................TAAACATAACCATTATTTCACAGGCC...............................................2611.0010001000000
.............................................................................................................CACAGGCCATGGTTGAGGCTAAGA...............................2411.0010000001000
...............................................................................TATATTTATGTATAAACATAACCAT............................................................2541.0040100000030
........................................................................................................TATTTCACAGGCCATGGTTGA.......................................2111.0010000000010
.....................................................................................................................ATGGTTGAGGCTAAGATAATGGGATC.....................2611.0010000001000
...........................................................................................................TTCACAGGCCATGGTTGAGG.....................................2011.0010000001000
.....................................................AGTAAATACATATATTATGT...........................................................................................2011.0010000000010
..........................................................................................................................TGAGGCTAAGATAATGGGAT......................2011.0010000001000
........................................................................................................TATTTCACAGGCCATGGTTGAG......................................2211.0010000001000
........................................................................................................................GTTGAGGCTAAGATAATGGGA.......................2111.0010000000010
................................................TGGTAAGTAAATACATATATTATGTTAT........................................................................................2811.0010000000010
................................................TGGTAAGTAAATACATATATTATG............................................................................................2411.0010000000010
.................................................................................................TAACCATTATTTCACAGGCCATGGTT.........................................2611.0010000000010
...........................................................................................................................GAGGCTAAGATAATGGGATCTGAGGA...............2611.0010000000010
......................................................................................................................TGGTTGAGGCTAAGATAATGG.........................2111.0010000000010
......................................................................TGTTATTCATATATTTATGTATAAACA...................................................................2711.0010000000010
.........................TTTCAATTACCTGCACATGAAGCT...................................................................................................................2450.8040000000040
.........................................................................TATTCATATATTTATGTATAAACA...................................................................2440.7530000000030
........................................................................................................................................TGGGATCTGAGGAGATAGATGA......2240.7530000000030
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGACTT...2830.6720000000020
.....................................................................................................................................TAATGGGATCTGAGGAGATA...........2030.6720000000020
.....................................................................................................................................TAATGGGATCTGAGGAGATAG..........2130.6720000000020
......TCAACCTCGATGGCTCCAATTTCAAT....................................................................................................................................2650.6030000000030
................................................TGGTAAGTAAATACATATATTATC............................................................................................2420.5010000000010
...........................................GAAGCTGGTAAGTAAATACA.....................................................................................................2020.5010000000010
..........................................TGAAGCTGGTAAGTAAATACATATA.................................................................................................2520.5010000000010
...........................................GAAGCTGGTAAGTAAATACATATA.................................................................................................2420.5010100000000
.........................TTTCAATTACCTGCACATGAAGCTGGG................................................................................................................2740.5020000000020
...........................................GAAGCTGGTAAGTAAATACATATATTA..............................................................................................2720.5010000000010
.........................................ATGAAGCTGGTAAGTAAATACATATAT................................................................................................2720.5010000000010
..........................................TGAAGCTGGTAAGTAAATACAT....................................................................................................2220.5010000000010
......TCAACCTCGATGGCTCCAATTTC.......................................................................................................................................2350.4020100000010
....................TCCAATTTCAATTACCTGCACATGAAGC....................................................................................................................2850.4020110000000
......TCAACCTCGATGGCTCCAATTTCA......................................................................................................................................2450.4020000000020
.......................................................................................TGTATAAACATAACCATTATTTCACAGG.................................................2830.3310100000000
.........................................................................................TATAAACATAACCATTATTTCACAGG.................................................2630.3310000000010
.......................................................................................................................................ATGGGATCTGAGGAGATAGATGACAA...2630.3310000000100
......................................................................................................................................AATGGGATCTGAGGAGATAGA.........2130.3310000001000
.....................................................................................................................................TAATGGGATCTGAGGAGATAGAA........2330.3310000000010
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAGAAA.......2930.3310000000010
...................................CTGCACATGAAGCTGGTAAGTAAATAC......................................................................................................2730.3310000000010
..........................................................................................ATAAACATAACCATTATTTCACAGG.................................................2530.3310000000010
................................................................................................................................TAAGATAATGGGATCTGAGGA...............2130.3310000000010
.....................................................................................................................................TAATGGGATCTGAGGAGATAGC.........2230.3310000001000
.......................................................................................................................................ATGGGATCTGAGGAGATAGATGACA....2530.3310000000010
.......................................................................................................................................ATGGGATCTGAGGAGATAGATG.......2230.3310010000000
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGC......2530.3310010000000
...................................................................................................ACCATTATTTCACAGG.................................................1630.3310000000001
................................................................................................................................TAAGATAATGGGATCTGAGGAGATC...........2530.3310000001000
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAA..........2630.3310000000010
.....................................................................................................................................TAATGGGATCTGAGGAGATAGATGACT....2730.3310000000010
.....................................................................................................................................TAATGGGATCTGAGGAGAA............1930.3310000000010
................................................................................................................................TAAGATAATGGGATCTGAGGAGATAGATG.......2930.3310000001000
................................................................................................................................TAAGATAATGGGATCTGAG.................1930.3310100000000
.................................................................................................................................AAGATAATGGGATCTGAGGAGATAGA.........2630.3310000000010
......................................................................................................................................AATGGGATCTGAGGAGATAGATGAC.....2530.3310000000010
........................................................................................................................................TGGGATCTGAGGAGATAGA.........1940.2510000001000
.........................................................................TATTCATATATTTATGTATAAACATAACCA.............................................................3040.2510000000010
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGTCA2840.2510000000010
...............................................................................TATATTTATGTATAAACATAACCA.............................................................2440.2510000000100
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGTCC2840.2510000001000
.......................................................................................................TTATTTCACAGGCCATGGTTGAGGA....................................2540.2510100000000
........................ATTTCAATTACCTGCACATGAAGCTGG.................................................................................................................2740.2510100000000
.........................................................................TATTCATATATTTATGTATAAACATAA................................................................2740.2510000000010
.........................TTTCAATTACCTGCACATGAAGA....................................................................................................................2350.2010000000010
............................CAATTACCTGCACATGAAGCT...................................................................................................................2150.2010000100000
..................GCTCCAATTTCAATTACCTGC.............................................................................................................................2150.2010100000000
........................ATTTCAATTACCTGCACATGAAGC....................................................................................................................2450.2010000000100
.....................CCAATTTCAATTACCTGCACATGA.......................................................................................................................2450.2010000000010
....................TCCAATTTCAATTACCTGCACATGA.......................................................................................................................2550.2010100000000
......TCAACCTCGATGGCTCCAATTT........................................................................................................................................2250.2010100000000
.....TTCAACCTCGATGGCTCCAATTTCAA.....................................................................................................................................2650.2010100000000
....TTTCAACCTCGATGGCTCCAATTTC.......................................................................................................................................2550.2010000000010
CAGGTTTCAACCTCGATGGCTCCAATT.........................................................................................................................................2750.2010000000010
droPer2
CAGGTTTCAACCTCGATGCCTCCAATTTCAATTACCTGCACATGAAGCTGGTAAGTAAATACATATATTATATTATTCATATATTTATGTATAAACATAACCATTATTTCACAGGCCATGGTTGAGGATAAGATAATGGGATCTGAGGAGATAGATGACAGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................TTGAGGATAAGATAATGGGAT......................21210.5021661008
.........................................................................................................................TTGAGGATAAGATAATGGGATC.....................2229.0018352008
.............................................................................................................................GGATAAGATAATGGGATCTGAGG................2328.50170170000
.............................................................................................................................GGATAAGATAATGGGATCTGAGGAGA.............2627.00142120000
.............................................................................................................................GGATAAGATAATGGGATCTGAGGA...............2426.50130130000
.........................................................................................................................TTGAGGATAAGATAATGGGATCT....................2325.5011250004
.........................................................................................................................TTGAGGATAAGATAATGGGATCTG...................2424.509070002
.............................................................................................................................GGATAAGATAATGGGATCTGAGGAG..............2523.006060000
.........................................................................................................................TTGAGGATAAGATAATGGGATCTGAG.................2622.505050000
.........................................................................................................................TTGAGGATAAGATAATGGGATCTGA..................2522.505030002
.........................................................................................................................TTGAGGATAAGATAATGGG........................1922.004000004
.........................................................................................................................TTGAGGATAAGATAATGGGATCTGAGG................2722.004010003
..............................................................................................................................GATAAGATAATGGGATCTGAGG................2222.004040000
......TCAACCTCGATGCCTCCAATTTCAAT....................................................................................................................................2612.002020000
.............................................................................................................................GGATAAGATAATGGGATCTGAGGAA..............2521.503030000
.........................................................................................................................TTGAGGATAAGATAATGGGA.......................2021.503030000
.............................................................................................................................GGATAAGATAATGGGATCTG...................2021.503120000
...........................................................................................................................GAGGATAAGATAATGGGATCT....................2121.002110000
..........................................................................................................................TGAGGATAAGATAATGGGATCT....................2221.002020000
......................................CACATGAAGCTGGTAAGTAAATACATA...................................................................................................2711.001010000
......TCAACCTCGATGCCTCCAATTTCAATTA..................................................................................................................................2811.001010000
..........................................................................................................................TGAGGATAAGATAATGGGATC.....................2121.002020000
.........................................................................................................................TTGAGGATAAGATAATGG.........................1821.002010001
..............................................................................................................................GATAAGATAATGGGATCTGAGGAGA.............2521.002020000
.............................................................................................................................GGATAAGATAATGGGATCTGAG.................2221.002020000
.AGGTTTCAACCTCGATGCCT...............................................................................................................................................2011.001010000
.............................................................................................................................GGATAAGATAATGGGATCTGAGGAGAT............2721.002020000
.............................................................................................................................GGATAAGATAATGGGATCTGA..................2120.501010000
............................................................................................................................AGGATAAGATAATGGGATCTGAGG................2420.501010000
......................................CACATGAAGCTGGTAAGTAAAT........................................................................................................2220.501010000
..........................................................................................................................TGAGGATAAGATAATGGGATCA....................2220.501010000
.........................................................................................................................TTGAGGATAAGATAATGGGATCTGAA.................2620.501010000
...............................................................................................................CAGGCCATGGTTGAGGATAAGATAA............................2520.501010000
..........................................................................................................................TGAGGATAAGATAATGGGAT......................2020.501000001
..............................................................................................ACATAACCATTATTTCACAGGCCATGG...........................................2720.501010000
....................................................................................................................................ATAATGGGATCTGAGGAG..............1820.501010000
..........................................................................................................................TGAGGATAAGATAATGGGA.......................1920.501010000
....................TCCAATTTCAATTACCTGCACATG........................................................................................................................2420.501010000
..............................................................................................................................GATAAGATAATGGGATCT....................1820.501010000
.........................................................................................................................TTGAGGATAAGATAATGGGT.......................2020.501000001
.......................................................................................................TTATTTCACAGGCCATGGTTGAGG.....................................2420.501010000
............................................................................TCATATATTTATGTATAAACATAACCAT............................................................2820.501010000
...........................TCAATTACCTGCACATGAAGCTGG.................................................................................................................2420.501010000
..............................................................................................................................GATAAGATAATGGGATCTGAGGAA..............2420.501010000
..........................................................................................................................TGAGGATAAGATAATGGGATCTGAG.................2520.501010000
.............................................................................................................................GGATAAGATAATGGGATCTGAGGAGATA...........2820.501010000
..............................................................................................................................GATAAGATAATGGGATCTGAGGAG..............2420.501010000
...............................................................................................................................ATAAGATAATGGGATCTGAGGAGA.............2420.501010000
............................................................................................................................AGGATAAGATAATGGGATCTGAGGAG..............2620.501010000
.....................CCAATTTCAATTACCTGCACATGAAGC....................................................................................................................2720.501010000
.........................................................................................................................TTGAGGATAAGATAATGGGATCTCC..................2520.501000001
........................................................................................................................................TGGGATCTGAGGAGATAGATGACAGA..2630.331010000

Generated: 05/17/2015 at 11:47 PM