ID:

dps_959

 Coordinate:

3:2005833-2005983 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dpse_GLEANR_14853:3]; CDS [Dpse\GA13959-cds]; intron [Dpse\GA13959-in]

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCGCATGTGTTTGCAATAACGGACAGTGCCTATAGAAACATGTTGGGTGGTAAGTACAGTACTCTTCTTATACACATACATAGCTCTTCTGATACACGAAATGCAATAAGTATATAGATTTATTTACTGTTTCATTATCAGCACTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTGCTTCATGTTTGCCATTTTCTGTGTGTTTGCTATCGAGAATTCCA
**************************************************(((((...((....)).))))).................((((((...(((..(((.((((((........)))))).))))))..))))))...........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 M062
head
 GSM343916
embryo
 M022
male body
.............GCAATAACGGACAGTGCCT........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........TTGCAATAACGGACAGTGC............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
...................ACGGACAGTGCCTATAGAAACATGTT.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0
...........TTGCAATAACGGACAGTGCCTATAG....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
........................CAGTGCCTATAGAAACATGTTGGGGG......................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
..................................AGAAACATGTTGGGTGATC...................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0
........................................................ACAGTACTTTTCTTAGAAACA.............................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0
..........................................................................................................................ATTTACTGTTTCAGAATCACC............................................................................................................ 21 3 4 0.25 1 0 0 0 0 1
.........................................................................................................................................................................................TCTCTCTCTCTCTCTGTCTC.............................................. 20 0 20 0.15 3 3 0 0 0 0
....................................AAACAACTTGGGTGGTAC..................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0
..................................................................................................GGAATGCAATAAGTATGGAG..................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0

Anti-sense strand reads

TGGCGTACACAAACGTTATTGCCTGTCACGGATATCTTTGTACAACCCACCATTCATGTCATGAGAAGAATATGTGTATGTATCGAGAAGACTATGTGCTTTACGTTATTCATATATCTAAATAAATGACAAAGTAATAGTCGTGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACGAAGTACAAACGGTAAAAGACACACAAACGATAGCTCTTAAGGT
**************************************************(((((...((....)).))))).................((((((...(((..(((.((((((........)))))).))))))..))))))...........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 SRR902011
testis
 V112
male body		 M059
embryo
 M062
head
.........................................................................................................................................TAGTCGTGGGGAAGAGGG................................................................................................ 18 2 12 6.08 73 69 0 0 2 1 1
...................................................................................................................................AAGGAATAGTCGTGAGGCAGGG.................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0
........................................................................................AGACTATGTGTTTTATGTTATTTA........................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................CGGGAATAGTCGTGAGGGAGAG.................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................CTAGTCGTGGGGGAGAGGG................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................AAAGTAATAGTCGTGAGT....................................................................................................... 18 1 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................................................................................................AGACGAAGTGCAAGGGGTAAAA.......................... 22 3 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................AAAAGTAATAGTCGTGAGT....................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................................................AGAGAGAGAGAGAGAGAGAGA........................................................... 21 0 20 0.10 2 0 0 0 2 0 0
......................................................................................................................................................................................GAGAGAGAGAGAGAGAGACAGAGAC............................................ 25 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................TCGAAGTAGAAACGGTAATA.......................... 20 3 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................................................................AGAGAGAGAGAGAGAGAGAGAGAGACA................................................. 27 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................AGAGAGAGAGAGAGACAGAG.............................................. 20 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................GAGGGAGAGGGAGAGAGAGAG...................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................GGGAGAGAGAGAGAGAGAGAGAGAGA......................................................................... 26 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:2005783-2006033 - dps_959 ACCGCATGTGTTTGCAATAACGGACAGT-GCCTATAGAAACATGTTGGGTGGTAAGTACAGTACTCTTCTT------------------------------------------------------ATACACATACA----------------------------TAGCTCTTCTGATACACGA-----AATGCAATAAGT--ATATAGAT------------------TTATTTACTGTTTCAT----------------------------------TATCA----------------------------GCACTCCCTCTCC------CT----------CTCTCTCTCTCTCT----CTCTCTCT----CTCTCTCT---CTCTC------------------TCTCTCTCTGTC------------------------------TCTGCTTCA-TGTTTG-----------CCATTTTCT---------GTGT---------------GTTTGCTATCGAGAATTCCA
droPer2 scaffold_2:2178127-2178387 - ACCGCATGTGTTTGCAATAACGGACAGT-GCCTATAGAAACATGTTGGGTGGTAAGTACAGTACTCTTCTT------------------------------------------------------ATACACATACA----------------------------TAGCTCTTCTGATACACGA-----AATGCAATAAGT--ATATAGAT------------------TTATTTACTGTTTCAT----------------------------------TATCA----------------------------GCACTCCCCCTCT------CT----------CTCTCTCTCTCTCT----CTCTCTCT----CACTCTCT-------C------TC----------TCTCTCTCTGTCTCT--GTCTC--------------T--GTCTCTGCTTCA-TGTTTG-----------CCATTTTCT---------GTGT---------------GTTTGCTATCGAGAATTCCA
droWil2 scf2_1100000004954:3337963-3338149 + AT-----------------------------------------TCTGGGAGGTAAGCAA----CTTGTTTTACCATG--CTTCA-----TGCCCT-TTTT----------TATT--CA------T---------GA----------------------------TA-------ACTT-GTTGG-----CAT---------------------------------------------------------------------------------------GT----------------------------TTTGC--TCCCTCCTTCTCCTTACTTAT----------CTCTCTCAC--T--TT----CC----CTCTCTCT---CTCTCTCTCTCTGTTTTTCTCTTTTTG----TC--------TCTGTGTCTATTTAACACA--TT--------------TTG-----------TCTTTTACC-------------------------------------------TCGTG
droVir3 scaffold_12875:3726794-3726989 - TTGGTTAGA--------------------------------------------AAGTAAGGAAATCTAC----CT--------------------------------------------------TTATTTAAA-----------------------------------CTTTTGATATGCC-GCAAA--TTTGGTTTAA--ATTTGCAT------------------TTAATTATCGTTTTGC----------------------------------------------------------------TTGCC--TCTCTCTCT------TTC--------TCTTTTTCTCTTTCTCC--CTCTCTCT----CTCTCTCT-------C------TC----------TTTCTCTCTATCTTT--CTCGC--------------T--CTC------------TTTC-----TCAACA---------GCTTTGTGC---------------------TCATCATGGAAA------
droMoj3 scaffold_6540:12679427-12679630 + C----ATATGTTTTTAGTTATAAACAGATTTTTATATAGA-GTGT----TTACGATAAT----CTTGAT--------T-TTT--------------------------------------------TTTTTGTATA----------------------------TAATTTTTCAAAT---TAA-----AATATATTAAAG--AAATAAAA------------------TTATGTAT------------------------------------------------------------------------------CTCTCTCTCT------CT----------CTCTCTCCCCCTCT----CTCTCTCT--------CTCT---CTTTC----------------TCTCTCTC--TCTT-ATATCTCTC--------------------------------------------------------AGATTTAAA---------------------TACATGTTTC-CGCTTTC
droGri2 scaffold_15203:6293659-6293866 + G-------TATTTATAAAAACAATCAGC-A---------------AGTGTGACGCGCAT----CTCTAC--------A------TA------------------------------TATCTACATATATCTACATA----------------------------TA-------TTTGCATGGC-----ATGACT-------------------AA--------------------------GCATATTATATATATTTTATTGAATGCAAATCTTTGTAG----------------------------TCTCC--TCTCTCTCT------CTC--------TCTCTCTCTCTCTCTCT--CTCTCTCT----GTCTCTCT-------C------TC----------TCTCTGTCTCTCTCT--CTCTC--------------T--GTC------------T-----------------------------------------------------------------CTCTCT
droAna3 scaffold_13117:2798308-2798519 + AAGAG-----------------------------------------------------CAATACTATTCGC------------------------------------------------------ACACACACACACACACACTCGCGGCTCTTCGCGGATATATAA------------GCC-GCACA--TATAGG---G--ATTGGCATTACAT-----------ATTCGCCTACTCC---------------------------------------------------------------------TTTCC--TCGCTCTGT------CT----------CTGTCTCTCTCTCTCTCTCTCTCTCT------CTCTCG-----CTC------------------GCTCTCTCTGTCTCT--------GTTGATTGCTGTCTCTGTCTC----------------------------------------T--ATCTCCATCTCA-TATGT-ATT--------------TGC
droBip1 scf7180000396575:85107-85294 + TTGTTCAG-----------------------------------------------------TTTCATAG----CT----------------------------------------------------------------------------------------------TTATATATACTC-------TCTCCTATATAT--ATATATAT------------------ATATTT--TGTTTAAT----------------------------------GTGTA----------------------------GCGCTCTCTCTCT------AT----------CTATCTATCTATCT----ATCTCTGTGTCTGTCTCACT-------A------TC----------TCTCTCTCTACCTCT--AGCTC----------TATCTCTCTCTC-----------------TATAA-------------------------CTGTCTAACTGTATATCTGTCTATCGATAA-----
droKik1 scf7180000302366:1036685-1036875 - TCCGCATGTATTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTGAGTAAT---ATCCT--------------CTTTTACTTTCCCTTTTC----TCTTTGGAGC--CA------ACTGCA----------------------------------------------------------------GGGCCCCGAT------------------------------ATCGGTGCAG----------------------------------TATCT----------------------------GCTCT-------------------------------------------------TTT--------GCTCCTC-------------------------------------------------------------------CGCCTC-TTGTTTGCCCCGCGTTGC---------GATTTCTCT---------------------GCGTTATCGAAAATTCCA
droFic1 scf7180000453858:603631-603832 + TCCGCACGTATTTGCAATAACGGACAGC-GCCTACAGAAACATGTTGGGTGGTAAGTAT----CTCAGC--------CTCTGCACTTACTTTCCCTTT-G----GCTTCGGCTT--CG------GGTAAACACTGA----------------------------TA-------TTGAAGGGGA-----AAGGCA-------------------AG--------------------------CAT----------------------------------TATCA----------------------------GCTAT-------------------------------------------------------------CAACTT-------------------------------------------------------------------CGCTTC-TTGTTTTCTCCAGAGCTC---------GACCAGA----AA---------------GGTCGCTATCGAGAATTCCA
droEle1 scf7180000491107:292858-293045 + TCCGCACGTATTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCAGT--------CTCTGCACTTACTTTCCTTTTCC----------GCTT--CA------GCTGCACACAGA----------------------------TA-------TTGGAGTTGA-----AATGCG-------------------AA--------------------------CAT----------------------------------TATCA----------------------------G--------------------------------------------------------------------CTG-------------------------------------------------------------------CGCTTC-TTGTTTTCTTTTGTGCGC---------GATTTCAGG---------------------TCGCTATCGGAAATTCCA
droRho1 scf7180000778233:28969-29155 - TCCGCACGTATTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGTC--------T-CTGCACTTACTTTCCT-TTTC----------GATT--CA------GCTGCGCACTGA----------------------------TA-------TTGGAGGGAA-----AAGGCG-------------------AA--------------------------CAT----------------------------------TATCA----------------------------G--------------------------------------------------------------------CTC-------------------------------------------------------------------CGCTTCATGGTTTTCTCTGGTGCGC---------GATTTCTGG---------------------TCGCTATCGAAAATTCCA
droBia1 scf7180000302473:54974-55079 - TTCTTTCCCTCTTTCTTTCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT------CTCTCT---CTCTC----------------TCTCTC----TCT--------CTCTCTCTCTTCTTCTCT--CT-----------------------------------------------------------------------------CTCTCTCT
droTak1 scf7180000415805:321613-321808 + TCCGCATGTGTTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGTC--------T-CTGCATGCACTTTCCCTTTTTTCCCTCTTTTGCTT--CA------TCTGCTCACTGA----------------------------TA-------CTGGAGGGGA-----AATGCG-------------------AA--------------------------CAT----------------------------------TATCG----------------------------G--------------------------------------------------------------------CTC-------------------------------------------------------------------CTCTTC-TT-TTTTCTCTGGTGCGC---------GATTTCTGG---------------------TCCCTATCGAGAATTCCA
droEug1 scf7180000409631:245143-245315 - AC-ACACACACATACATACTCAGACGAC-AC-AAAATAAACAA----GGATGCAA------------------------------------------------------------------------------ACG----------------------------CA-------TGGGAATTGA-----AATTCG-------------------TGTATGGCAATTAAAATATCT-----------------------------------------------------------------------------GC--TTTCTTTCT------CTCTCTCTCTCTCTT-TTCTCTCTCT-T--TT----CT----TTCTCTCT---CTCTC------------------TCTTTC--TCTTTC----------------------------TCTCTTTCA-TCTTT------------------------------------------------------------------CCC
dm3 chr2R:20889673-20889860 - TCCGCATGTATTTGCAATCACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGAT--------C-CTGCACTTACGTTCCCTTTTC----------GCTCCACA------GCTGCACATACA----------------------------TA-------TGGGAGATGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATCA----------------------------A--------------------------------------------------------------------CAG-------------------------------------------------------------------CCTTTC-CTTTTTTCTCTGGAGCGC---------GATTTCTGG---------------------TCGCTATCAA-AATTCCA
droSim2 2r:21353137-21353322 - TCCGCATGTATTTGCAATCACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGAT--------C-CGGCACTTACTTTCCCTTTTC----------GATC--CA------GCTGCACACACA----------------------------TA-------TGGGATGTGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATCA----------------------------A--------------------------------------------------------------------CAG-------------------------------------------------------------------CCCTTC-TTATTTTCTCTGGTGCGC---------GATTTCTGG---------------------TCGCTATCAA-AATTCCA
droSec2 scaffold_23:746713-746898 - TCCGCATGTATTTGCAATCACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGAT--------C-CGGCACTTACTTTCCCTTTTC----------GATC--CA------GCTGCACACACA----------------------------TA-------TGGGATGTGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATCA----------------------------A--------------------------------------------------------------------CAG-------------------------------------------------------------------CCCTTC-TTATTTTCTCTGGTGCGC---------GATTTGTGG---------------------TCGCTATCAA-AATTCCA
droYak3 X:16867919-16868124 + G-------TGTGTGCAAAAATTGAAATT-GAGAATGGCAAAATAATGAATTGTAAATT----------------------------------------------------GCTT--CG------AACGCACACATA----------------------------TG-------TAAGTATATT-----AATTTA-------------------TT--------------------------TAT----------------------------------TATGCTACGCAATAAAATCAAATAAAATGGGA--TTCTCCCCCTCT------CT----------CTCTCTCTCTCTCT----CTTCCTCT--------CTCT---CTCTC----------------CCTCTCTC--ACTT------------------------------CCCCCTTTA-GGTTTT-----------CCTTTC----------------------------------------------CCTGT
droEre2 scaffold_4845:13561069-13561204 - GTCTATGG-----------------------------------------------------------------CT----------------------------------------------------------------------------------------------TTATTT---------------------------------------T--------------------------TAC----------------------------------TATACCACA------------------------CCACTCTCTCTCT------CT----------CTCTCTCTCTCTCT----CTCCCTCT--------GTTT---CTATC----------------CCTCTCGC--TCCT------------------------------TCCTCCTCG----------CGGTACCC---------AATTTCT--TTCTCGC--------------TTTTTTACGGCTCTGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACCGCATGTGTTTGCAATAACGGACAGT-GCCTATAGAAACATGTTGGGTGGTAAGTACAGTACTCTTCTT------------------------------------------------------ATACACATACA----------------------------TAGCTCTTCTGATACACGA-----AATGCAATAAGT--ATATAGAT------------------TTATTTACTGTTTCAT----------------------------------TATCA----------------------------GCACTCCCTCTCC------CT----------CTCTCTCTCTCTCT----CTCTCTCT----CTCTCTCT---CTCTC------------------TCTCTCTCTGTC------------------------------TCTGCTTCA-TGTTTG-----------CCATTTTCT---------GTGT---------------GTTTGCTATCGAGAATTCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GCAATAACGGACAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........TTGCAATAACGGACAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
...................ACGGACAGT-GCCTATAGAAACATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
...........TTGCAATAACGGACAGT-GCCTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................T---CTCTC------------------TCTCTCTCTGTC------------------------------TC..................................................................................20200.1530300000000
droPer2
ACCGCATGTGTTTGCAATAACGGACAGT-GCCTATAGAAACATGTTGGGTGGTAAGTACAGTACTCTTCTT------------------------------------------------------ATACACATACA----------------------------TAGCTCTTCTGATACACGA-----AATGCAATAAGT--ATATAGAT------------------TTATTTACTGTTTCAT----------------------------------TATCA----------------------------GCACTCCCCCTCT------CT----------CTCTCTCTCTCTCT----CTCTCTCT----CACTCTCT-------C------TC----------TCTCTCTCTGTCTCT--GTCTC--------------T--GTCTCTGCTTCA-TGTTTG-----------CCATTTTCT---------GTGT---------------GTTTGCTATCGAGAATTCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........TTGCAATAACGGACAGT-GCCTATAGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
................ATAACGGACAGT-GCCTATAGAAACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........TTGCAATAACGGACAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....CATGTGTTTGCAATAACGGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......TGTGTTTGCAATAACGGACAGT-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........TTTGCAATAACGGACAGT-GCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--------------T--GTCTCTGCTTCA-TGTTTG-----------CC.......................................................2411.001100000
..........TTTGCAATAACGGACAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droWil2
AT-----------------------------------------TCTGGGAGGTAAGCAA----CTTGTTTTACCATG--CTTCA-----TGCCCT-TTTT----------TATT--CA------T---------GA----------------------------TA-------ACTT-GTTGG-----CAT---------------------------------------------------------------------------------------GT----------------------------TTTGC--TCCCTCCTTCTCCTTACTTAT----------CTCTCTCAC--T--TT----CC----CTCTCTCT---CTCTCTCTCTCTGTTTTTCTCTTTTTG----TC--------TCTGTGTCTATTTAACACA--TT--------------TTG-----------TCTTTTACC-------------------------------------------TCGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTGGTTAGA--------------------------------------------AAGTAAGGAAATCTAC----CT--------------------------------------------------TTATTTAAA-----------------------------------CTTTTGATATGCC-GCAAA--TTTGGTTTAA--ATTTGCAT------------------TTAATTATCGTTTTGC----------------------------------------------------------------TTGCC--TCTCTCTCT------TTC--------TCTTTTTCTCTTTCTCC--CTCTCTCT----CTCTCTCT-------C------TC----------TTTCTCTCTATCTTT--CTCGC--------------T--CTC------------TTTC-----TCAACA---------GCTTTGTGC---------------------TCATCATGGAAA------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
C----ATATGTTTTTAGTTATAAACAGATTTTTATATAGA-GTGT----TTACGATAAT----CTTGAT--------T-TTT--------------------------------------------TTTTTGTATA----------------------------TAATTTTTCAAAT---TAA-----AATATATTAAAG--AAATAAAA------------------TTATGTAT------------------------------------------------------------------------------CTCTCTCTCT------CT----------CTCTCTCCCCCTCT----CTCTCTCT--------CTCT---CTTTC----------------TCTCTCTC--TCTT-ATATCTCTC--------------------------------------------------------AGATTTAAA---------------------TACATGTTTC-CGCTTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................CTCTCTCTCT------CT----------CTCTCTCCCC....................................................................................................................................................................................22200.051000010
droGri2
G-------TATTTATAAAAACAATCAGC-A---------------AGTGTGACGCGCAT----CTCTAC--------A------TA------------------------------TATCTACATATATCTACATA----------------------------TA-------TTTGCATGGC-----ATGACT-------------------AA--------------------------GCATATTATATATATTTTATTGAATGCAAATCTTTGTAG----------------------------TCTCC--TCTCTCTCT------CTC--------TCTCTCTCTCTCTCTCT--CTCTCTCT----GTCTCTCT-------C------TC----------TCTCTGTCTCTCTCT--CTCTC--------------T--GTC------------T-----------------------------------------------------------------CTCTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AAGAG-----------------------------------------------------CAATACTATTCGC------------------------------------------------------ACACACACACACACACACTCGCGGCTCTTCGCGGATATATAA------------GCC-GCACA--TATAGG---G--ATTGGCATTACAT-----------ATTCGCCTACTCC---------------------------------------------------------------------TTTCC--TCGCTCTGT------CT----------CTGTCTCTCTCTCTCTCTCTCTCTCT------CTCTCG-----CTC------------------GCTCTCTCTGTCTCT--------GTTGATTGCTGTCTCTGTCTC----------------------------------------T--ATCTCCATCTCA-TATGT-ATT--------------TGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTCTCTC.....................................................................................................................................................................20200.051100000
.........................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTCTCTC.......................................................................................................................................................................20200.051100000
..............................................................................................................................CACACACACACACACACTCGC.................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droBip1
TTGTTCAG-----------------------------------------------------TTTCATAG----CT----------------------------------------------------------------------------------------------TTATATATACTC-------TCTCCTATATAT--ATATATAT------------------ATATTT--TGTTTAAT----------------------------------GTGTA----------------------------GCGCTCTCTCTCT------AT----------CTATCTATCTATCT----ATCTCTGTGTCTGTCTCACT-------A------TC----------TCTCTCTCTACCTCT--AGCTC----------TATCTCTCTCTC-----------------TATAA-------------------------CTGTCTAACTGTATATCTGTCTATCGATAA-----SizeHit CountTotal NormTotal
No Reads
droKik1
TCCGCATGTATTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTGAGTAAT---ATCCT--------------CTTTTACTTTCCCTTTTC----TCTTTGGAGC--CA------ACTGCA----------------------------------------------------------------GGGCCCCGAT------------------------------ATCGGTGCAG----------------------------------TATCT----------------------------GCTCT-------------------------------------------------TTT--------GCTCCTC-------------------------------------------------------------------CGCCTC-TTGTTTGCCCCGCGTTGC---------GATTTCTCT---------------------GCGTTATCGAAAATTCCASizeHit CountTotal NormTotal
No Reads
droFic1
TCCGCACGTATTTGCAATAACGGACAGC-GCCTACAGAAACATGTTGGGTGGTAAGTAT----CTCAGC--------CTCTGCACTTACTTTCCCTTT-G----GCTTCGGCTT--CG------GGTAAACACTGA----------------------------TA-------TTGAAGGGGA-----AAGGCA-------------------AG--------------------------CAT----------------------------------TATCA----------------------------GCTAT-------------------------------------------------------------CAACTT-------------------------------------------------------------------CGCTTC-TTGTTTTCTCCAGAGCTC---------GACCAGA----AA---------------GGTCGCTATCGAGAATTCCASizeHit CountTotal NormTotal
No Reads
droEle1
TCCGCACGTATTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCAGT--------CTCTGCACTTACTTTCCTTTTCC----------GCTT--CA------GCTGCACACAGA----------------------------TA-------TTGGAGTTGA-----AATGCG-------------------AA--------------------------CAT----------------------------------TATCA----------------------------G--------------------------------------------------------------------CTG-------------------------------------------------------------------CGCTTC-TTGTTTTCTTTTGTGCGC---------GATTTCAGG---------------------TCGCTATCGGAAATTCCASizeHit CountTotal NormTotal
No Reads
droRho1
TCCGCACGTATTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGTC--------T-CTGCACTTACTTTCCT-TTTC----------GATT--CA------GCTGCGCACTGA----------------------------TA-------TTGGAGGGAA-----AAGGCG-------------------AA--------------------------CAT----------------------------------TATCA----------------------------G--------------------------------------------------------------------CTC-------------------------------------------------------------------CGCTTCATGGTTTTCTCTGGTGCGC---------GATTTCTGG---------------------TCGCTATCGAAAATTCCASizeHit CountTotal NormTotal
No Reads
droBia1
TTCTTTCCCTCTTTCTTTCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT------CTCTCT---CTCTC----------------TCTCTC----TCT--------CTCTCTCTCTTCTTCTCT--CT-----------------------------------------------------------------------------CTCTCTCTSizeHit CountTotal NormTotal
No Reads
droTak1
TCCGCATGTGTTTGCAATAACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGTC--------T-CTGCATGCACTTTCCCTTTTTTCCCTCTTTTGCTT--CA------TCTGCTCACTGA----------------------------TA-------CTGGAGGGGA-----AATGCG-------------------AA--------------------------CAT----------------------------------TATCG----------------------------G--------------------------------------------------------------------CTC-------------------------------------------------------------------CTCTTC-TT-TTTTCTCTGGTGCGC---------GATTTCTGG---------------------TCCCTATCGAGAATTCCASizeHit CountTotal NormTotal
No Reads
droEug1
AC-ACACACACATACATACTCAGACGAC-AC-AAAATAAACAA----GGATGCAA------------------------------------------------------------------------------ACG----------------------------CA-------TGGGAATTGA-----AATTCG-------------------TGTATGGCAATTAAAATATCT-----------------------------------------------------------------------------GC--TTTCTTTCT------CTCTCTCTCTCTCTT-TTCTCTCTCT-T--TT----CT----TTCTCTCT---CTCTC------------------TCTTTC--TCTTTC----------------------------TCTCTTTCA-TCTTT------------------------------------------------------------------CCCSizeHit CountTotal NormTotal
No Reads
dm3
TCCGCATGTATTTGCAATCACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGAT--------C-CTGCACTTACGTTCCCTTTTC----------GCTCCACA------GCTGCACATACA----------------------------TA-------TGGGAGATGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATCA----------------------------A--------------------------------------------------------------------CAG-------------------------------------------------------------------CCTTTC-CTTTTTTCTCTGGAGCGC---------GATTTCTGG---------------------TCGCTATCAA-AATTCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........ATTTGCAATCACGGATAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............AATCACGGATAGT-GCCTATAGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGCGC---------GATTTCTGG---------------------..................1813.0030000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATGTATTTGCAATCACGGATAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GATAGT-GCCTATAGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TATTTGCAATCACGGATAGT-GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATTTGCAATCACGGATAGT-GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATAGT-GCCTATAGAAACATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATTTGCAATCACGGATAGT-GCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TATTTGCAATCACGGATAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........TATTTGCAATCACGGATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------------------------------------------------CCTTTC-CTTTTTTCTCTGGAGCGC---------................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000
...................................................................................................................................ATACA----------------------------TA-------TGGGAGATGG-----AATG....................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
................ATCACGGATAGT-GCCTATAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCACGGATAGT-GCCTATAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ATGTTGGGTGGTAAGTAT----CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................GATGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATC..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TATAGAAACATGTTGGGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................CCTATAGAAACATGTTGGGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCACGGATAGT-GCCTATAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CAATCACGGATAGT-GCCTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AACATGTTGGGTGGTAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TATAGAAACATGTTGGGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTATTTGCAATCACGGATAGT-GCCTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................CTATAGAAACATGTTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................AT----CTCGAT--------C-CTGCACTTACGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................ATCACGGATAGT-GCCTATAGAAACATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATGTATTTGCAATCACGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GAAACATGTTGGGTGGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGC---------GATTTCTGG---------------------TCGCA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........TTTGCAATCACGGATAGT-GCCTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGCGC---------GATTTCTGG---------------------TC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................TCACGGATAGT-GCCTATAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGCATGTATTTGCAATCACGGATAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................A-------TGGGAGATGG-----AATGCC-------------------AG--------------------------AAT----------------------------------T.............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........TATTTGCAATCACGGATAGT-GCCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ACA----------------------------TA-------TGGGAGATGG-----AATGCC-------------------...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
TCCGCATGTATTTGCAATCACGGATAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCCGCATGTATTTGCAATCACGGATAGT-G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATGTATTTGCAATCACGGATAGT-GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GT-GCCTATAGAAACATGTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CAATCACGGATAGT-GCCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................CATACA----------------------------TA-------TGGGAGATGG-----AA......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGGAGCGC---------GATTTCTGG---------------------..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................ACGGATAGT-GCCTATAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCCGCATGTATTTGCAATCACGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GTAAGTAT----CTCGAT--------C-CTGCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................CGGATAGT-GCCTATAGAAACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGTATTTGCAATCACGGATAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................CTATAGAAACATGTTGGGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......TGTATTTGCAATCACGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................ACA------GCTGCACATACA----------------------------TA-------TGGGA..................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.CCGCATGTATTTGCAATCACGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCACGGATAGT-GCCTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TAGT-GCCTATAGAAACATGTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGAAACATGTTGGGTGGTAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCGCATGTATTTGCAATCACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGAT--------C-CGGCACTTACTTTCCCTTTTC----------GATC--CA------GCTGCACACACA----------------------------TA-------TGGGATGTGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATCA----------------------------A--------------------------------------------------------------------CAG-------------------------------------------------------------------CCCTTC-TTATTTTCTCTGGTGCGC---------GATTTCTGG---------------------TCGCTATCAA-AATTCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....ATGTATTTGCAATCACGGATAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.............................GCCTATAGAAACATGTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
...............................CTATAGAAACATGTTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....ATGTATTTGCAATCACGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.......GTATTTGCAATCACGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................GT-GCCTATAGAAACATGTTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
................................TATAGAAACATGTTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.........ATTTGCAATCACGGATAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
............TGCAATCACGGATAGT-GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
droSec2
TCCGCATGTATTTGCAATCACGGATAGT-GCCTATAGAAACATGTTGGGTGGTAAGTAT----CTCGAT--------C-CGGCACTTACTTTCCCTTTTC----------GATC--CA------GCTGCACACACA----------------------------TA-------TGGGATGTGG-----AATGCC-------------------AG--------------------------AAT----------------------------------TATCA----------------------------A--------------------------------------------------------------------CAG-------------------------------------------------------------------CCCTTC-TTATTTTCTCTGGTGCGC---------GATTTGTGG---------------------TCGCTATCAA-AATTCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................CTATAGAAACATGTTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050410
..............CAATCACGGATAGT-GCCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............TGCAATCACGGATAGT-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...............AATCACGGATAGT-GCCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............CAATCACGGATAGT-GCCTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.....ATGTATTTGCAATCACGGATAGT-GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
............TGCAATCACGGATAGT-GCCTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.......GTATTTGCAATCACGGATAGT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
G-------TGTGTGCAAAAATTGAAATT-GAGAATGGCAAAATAATGAATTGTAAATT----------------------------------------------------GCTT--CG------AACGCACACATA----------------------------TG-------TAAGTATATT-----AATTTA-------------------TT--------------------------TAT----------------------------------TATGCTACGCAATAAAATCAAATAAAATGGGA--TTCTCCCCCTCT------CT----------CTCTCTCTCTCTCT----CTTCCTCT--------CTCT---CTCTC----------------CCTCTCTC--ACTT------------------------------CCCCCTTTA-GGTTTT-----------CCTTTC----------------------------------------------CCTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTCTATGG-----------------------------------------------------------------CT----------------------------------------------------------------------------------------------TTATTT---------------------------------------T--------------------------TAC----------------------------------TATACCACA------------------------CCACTCTCTCTCT------CT----------CTCTCTCTCTCTCT----CTCCCTCT--------GTTT---CTATC----------------CCTCTCGC--TCCT------------------------------TCCTCCTCG----------CGGTACCC---------AATTTCT--TTCTCGC--------------TTTTTTACGGCTCTGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:42 PM