ID:

dps_956

 Coordinate:

3:1932995-1933145 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.1 -18.9 -18.9

Flybase annnotation

exon [dpse_GLEANR_14862:1]; CDS [Dpse\GA15466-cds]; intron [Dpse\GA15466-in]

No Repeatable elements found

Sense Strand Reads

-----------------------------------###############---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGCTGAAAAAGAAGAAACGCCATAAAAGCAAAAAATGGGCCAAGTCAAGGTACGTAAAAGAGAGAGCGCTGCACACACAAACACACTCAAAATTCACATGCTTCACATGTATGCGTATCCTATTATCCTGTGGCAAGTTGGCAGCCCCAAAAGGATAAAAGCGTGGGAAAACTTTGTAAATTGTAATTCAATTCGTAAAAAGTGATATTCTTAATGTTATCTGGGAATTTTATCTCCTTATATGTTAATA
*************************************************((((((((.......(((((.((.........................)))))))........))))))))...(((((((..(((.........))).....)))))))...***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body
................................................................GAGCGCTGCACACACAAACAC...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................................ATATTCTTGATGTTATCTGGG......................... 21 1 1 1.00 1 0 1 0
.................................AAATGGGCCAAGTCAAGGTA...................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1
.............ATAAACGCCATAAAAGCAAAAAATGGGC.................................................................................................................................................................................................................. 28 1 1 1.00 1 0 1 0
....................................................................................................................................................................................................................................TTTTATCTCCTTATATGTTAA.. 21 0 1 1.00 1 1 0 0
................................................................................................................................CTGTGGCAAGTTGGCAGCC........................................................................................................ 19 0 1 1.00 1 1 0 0
.............................................................................................................................................................AAAAGCGTGGGAAAACTTTGTAA....................................................................... 23 0 1 1.00 1 0 1 0
..................................................................................................................................GTGGCAAGTTGGCAGCCCCA..................................................................................................... 20 0 1 1.00 1 1 0 0
...........................................................................................................................TTATCCTGTGGCAAGTTGGCA........................................................................................................... 21 0 1 1.00 1 1 0 0
...............................................................................................................................CCTGTCGCAAATTGACAGCCCCA..................................................................................................... 23 3 1 1.00 1 1 0 0
............................................................................................................................TATCCTGTGGCAAGTTGGCAGC......................................................................................................... 22 0 1 1.00 1 1 0 0
........TAAGAAGAAACGCCATAAAAGC............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0
..............................................................................................................................................................................................................TATTCTTAATGTTATCTGGGA........................ 21 0 1 1.00 1 1 0 0
...............................................................................................................................CCTGTCGCAAATTGACAGCCC....................................................................................................... 21 3 2 1.00 2 2 0 0
.........AAGAAGAAACGCCATAAAA............................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0
............................GCAAAAAATGGGCCAAGTC............................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0
.................................................GGTACGTAAAAGAGAGAGCG...................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
........................................................................................................................CTATTATCCTGTGGCAAGTT............................................................................................................... 20 0 1 1.00 1 1 0 0
..........................................................................................................................................TTGGCAGCCCCAAAAGGATAA............................................................................................ 21 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................ATTCAATTCGTGAAAAGTGAT............................................ 21 1 1 1.00 1 0 1 0
..............................AAAAAATGGGCCAAGTCAAG......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
...........................................................................................................ATGTATGCGTATCCTATTATC........................................................................................................................... 21 0 1 1.00 1 1 0 0
.................................AAATGGGCCAAGTCAAGA........................................................................................................................................................................................................ 18 1 2 0.50 1 1 0 0
...............................AAAAATGGGCCAAGTCAAGAAAG..................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0
...............................................................................................................................CCTGTCGCAAATTGACAGCC........................................................................................................ 20 3 10 0.20 2 2 0 0
.......................................................................................................................................................AAGGATTAGAGGGTGGGAAA................................................................................ 20 3 17 0.06 1 1 0 0
.....................................................................................................................................................TGAATGATAAAAGCGTGGG................................................................................... 19 3 20 0.05 1 1 0 0

Anti-sense strand reads

GACGACTTTTTCTTCTTTGCGGTATTTTCGTTTTTTACCCGGTTCAGTTCCATGCATTTTCTCTCTCGCGACGTGTGTGTTTGTGTGAGTTTTAAGTGTACGAAGTGTACATACGCATAGGATAATAGGACACCGTTCAACCGTCGGGGTTTTCCTATTTTCGCACCCTTTTGAAACATTTAACATTAAGTTAAGCATTTTTCACTATAAGAATTACAATAGACCCTTAAAATAGAGGAATATACAATTAT
*****************************************************************************************((((((((.......(((((.((.........................)))))))........))))))))...(((((((..(((.........))).....)))))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M059
embryo
...............................................................................................................................GGACAGCGTTTAACTGTCGG........................................................................................................ 20 3 10 1.70 17 17 0 0 0
.................................................................................................................................................................................................................TGAATTACAATAGACCCTTAGA.................... 22 2 1 1.00 1 1 0 0 0
.........................................................................................................................................CAACCGTCGGGGTTTTCCTAT............................................................................................. 21 0 1 1.00 1 1 0 0 0
........................................................................................GTTTTAAGTGTACGAAGTGT............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................................................................ACATACGCATAGGATAATAGGACAC...................................................................................................................... 25 0 1 1.00 1 0 1 0 0
...................................TACCCGGTTCAGTTCCATGCA................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.........................................................................................................TGTACATACGCATAGGATAATAGGAC........................................................................................................................ 26 0 1 1.00 1 0 1 0 0
.....................................CCCGGTTCAGTTCCATGCATT................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
.........................................................................TGTGTGTTTGTGTGAGTTTT.............................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0
.......................................................................................................................GGATAATAGGACACCGTTCAA............................................................................................................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................GCGTAGGGTGATAGGACACCGTT.................................................................................................................. 23 3 2 0.50 1 0 0 1 0
.......GTTTCTTCTTTGCGGTATG................................................................................................................................................................................................................................. 19 2 4 0.25 1 1 0 0 0
...............................................................................................................................GGACAGCGTTTAACCGTCGGC....................................................................................................... 21 3 9 0.11 1 1 0 0 0
.....................................CCCTGTTTGGTTCCATGC.................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 2

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:1932945-1933195 - dps_956 CT----GCTGAAAAAGAAGAAACG-CCAT-A-AAA--GCAAAAAATGGGCCAAGTCAAGGTACGTAAAAGA--GA-----GAGC--GCTGCACACA----------------CA--------------------------------------------------------A-----------------------A--CACA----CTCA-------AAA------------------------------------------TTCACATGCTT---------------------CACATG----------------T--------ATGCG---------------TATCCTAT-TATCCT--------------GTGGCAAGTTGGCAGCCCCAAAAG-------G-ATAAAAGCGTGGGAAAACTT-T-G-----TAAATTGT-------AATTCAA--TTCG----TA-----AAAAGTGATATTC----------TTA-----------ATGTTATCTGG---------------------------GA-----------A----TTTTATCTCCTTA---------TATGTTA----------------------ATA
droPer2 scaffold_2:2105884-2106135 - CT----GCTGAAAAAGAAGAAACG-CCAT-A-AAA--GCAAAAAATGGGCCAAGTCAAGGTACGTAAAAGA--GA-----GAGAGCGCTGCACACA----------------CA--------------------------------------------------------A-----------------------A--CACA----CTCA-------AAA------------------------------------------TTCACATGCTT---------------------CACATG----------------T--------ATGCG---------------TATCCTAT-TATCCT--------------GTGGCAAGTTGGCAGCCCCAAAAG-------G-ATAAAAGCGTGGGAAAACTT-CAA----TTCAAGATGAAATTTTAATTCAA--TTCG----TG-----AAAAGTGATATTC----------TTA-----------ATGTTATCTGG---------------------------GA-----------A----TTTTATC-----------------------------------------TCCTTA
droWil2 scf2_1100000004510:1872261-1872511 - TT----GCACACA----CTTAAA--------------GA-CAAAATGGGCCAAGTCAAGGTACGTACACAC--AG-----ACAA--A-----------------------------------------------------------------------------------T-----------------------A--CACACTCT--------------------------------------------------------TTTA----------------------------TATGTACATATGTATGTATGTAT--------AGCTA---------------TATCCTGT-TATCCTTTA--------AACGCGACAAGTTGGCAGAGCTAAGAAAAAGCAGC-AATAAAGCGTGGGAAAAAAT-C-A----TACCATAC-------------AATTACAAAC-----------------------------TAAACTA-AGCTAATTAATTG--ATTAG---------------------------AAAGAAGCCCAAAA----CTAAAAC----------GCGTG--TGTTA-------------------ACAATT
droVir3 scaffold_12875:17234176-17234491 + dvi_7435 GC----TTAAGTAAA--TCAAGTG-CATT-TATAA--GG-AATAATGGGTCAAATCAAGGTAAATACCAAA--CA-----CAA----TCATACGTA------------------CAT------------ACAAATCTAGCTAT---GCACATATAATGTAACATTTTTAA-TGTTAATTTATCGAAACA-----G--CATA----CTCATAACATATTACCATGTGAGTGTGTATGTGTGTGTATATATAT------GCA---------------------------------TATATG------TATGTATA--T--------GTAAG---------------CTACCTGT-TATCC--------------TTTGACAAGTTGGCAACTCTGCTAT-------A-AGTTAAGCGTGGGAAAATTT-A-T-------AACATCATA------------TTTTGAA----TGATTAGAA----------------------------------------------------------------------------------------------------------ACTTC--TGTCTTTGTGT--G----------GCTGCT
droMoj3 scaffold_6496:10771514-10771795 - dmo_1085 C-----GACTGTA----CTTA-----------AAA--GC-AATAATGGGCCAAATCAGGGTAAGTACAATT--AC-----ATAA---TCGTGCCTT------------------TGTTAATATGTATTTACGAATGTATATGTGAAGCATATAAAATGCA---------A-TTTTAATTTATGTGCACACACATG--CTCA----CATA-------AAT--ATGTA------------------------T------TCC---------------------------------TTTATG------TGCCTATA--T--------AT--------------TAAGCTACCTGT-TATCC--------------TTTGACAAGCTGGCAACGCTGATAT-------A-TATAAAGCGTGGGAATATTT-A-T-------AGTTTCACA------------TGTTAAG----TGATTAGAA----------------------------------------------------------------------------------------------------------GCGTC--TGTTTATAAGT--------------GCGTG
droGri2 scaffold_15245:16754058-16754306 + AA----CACCAAA-------------------TAA--GG-AAAGATGGGCCAAGTTAAGGTAAATACAAAAAC-AAACAAAAGAACGCTGTTAATG----------------TA--------------------------------------------------------ATGTTATTGTGAATGGACAAACGTG--GTTA----CATA-------TTA--ATGTA-------------------------------------------------------------------------ATTATGAAGGTGTGTAC--------AGATGTAGATAGGTCTTAAGCTACCTAT-TATCCTTTG--------T------CATGTTG----CTCTCAAAG-------C-TTTTGGGCGTGAGGAAATTATTTA----TTTAAAATAAAT--------------------------------------------------------------------------------------------------------------ACATAAA----TGATTATAA--------GCGTA--TGCTT----------------------CTG
droAna3 scaffold_13266:12119729-12119990 - TC----GACAACA----CCAGCAGACCAGAA-ACA--GG-AAAAATGGGCCAAGTCAAGGTATGTGAAAC---GA-----AA----GCCGTCCGTC------------------CGTCAA-AGG-----------------------------------------------------------------------------------------------------------------------------------------TGGTGGTGTTTCCTGGGTAGCACCAGGCACAT----------------------C--------CTGCG---------------CATCCT---------TTC--------GTCTTGGCAAGTGGGCAGCCCCGCCTG----------TGCTGGCGTGGGAAATCCT---C----TTTAGTTTT-------GGAAGAA--CTCG----GGAA----------------------------------------------ATCGGCATGTT----GCTGGCCGGGAAAATCGAATGC-AGCAGATA----TTTTATTCAGTTT---------AATGGTA----------------------AT-
droBip1 scf7180000396547:358740-358996 + CGGTTCGACCAGAAA-----------------ACA--GG-AAAAATGGGCCAAGTCAAGGTATGTGAAGCGAA-AGCAGCGAGT--C-----CGTC------------------CGTCA--AGG-----------------------------------------------------------------------------------------------------------------------------------------CGGTGGTGTTTCCTGTATAGCACCAGCCGCAT----------------------T--------CTGCG---------------C---------ATCCTTCG--------GCCGTGGCAAGTGGGCAGCCCCGCATG-------G---CCTGGCGTGGGAAACTTT---C----TTTAGTTTT-------GGAAGGA--TTTT----AAAA----------------------------------------------ATCGGAATGTT----TTTGGACAGGAAAATCCAATTC-ACTTAATA----TTTTATTCAGTTT---------AATGGTA----------------------AT-
droKik1 scf7180000302366:970549-970827 - TC----GACCAGAAA--ACAAAA------AA-ACAGGAA-AAATATGGGACAAGTCAAGGTACGTGGACTC--GG-----GGAA--GAAGCATTCAAT---------GTGTGTG--------------------------------------------------------T-----------------------G--TACACAC------------------------------------------------------------------CTCTTG-----------------TGTATA------CCGGTATA--T--------GTACG---------------CATCCTTTTCGTCCTGCGGGGCGGCTTGCTTGGCAAGTGGGCAGCCCTCTACG-------TTGCGAAAGCGTGGGAAAATCC-A-A----GTTGACAGTAGA------------TTATAGC----AAACAGGAAGTGCT---CTCC-----AGGCT------AT-AGATTT--CTCCA----------------------------------AGAACTA----TTTTATTTCGTGT---------CATGA----------------------CCATA
droFic1 scf7180000453858:666922-667187 + TC----GACGGGAAA--AA---------GAAACCA--AT-AAAAATGGGCCAAGCAAAGGTAAGCGGAATC--AG-----AAGT--GCAGCACACATGGAAGCGTTCGCACACA--------------------------------------------------------A-----------------------ACAAGCACAAT---------------------------------------------------------------TTCT---------------------CATGTG----------------T--------ATACG---------------CAT---------CCTTGG--------TCCTTGACGAGTTGGCAACCCCAAAAG-----------GGAACTGTGGAAAATT-T-A-G----ATAACCGCTTAG------------CTTTACT----TAATAGAGACTTCT-----CCA----AAGCA-----------ATGAAAAACGGGATATCGGCCTACAT-------------------ACATAAG----TGTTATTTAGTT--------TT--TGGTA----------------------GTA
droEle1 scf7180000491107:355151-355392 + TC----GACCAGAAA--ATAAAA-----GAA-ACA--GGAAAAAATGGGCCAAGCAAAGGTAAGCGAAATC--GG-----GAGT--GCACCGCCGTGTGTG-TGT----------------------------------------------------------------------------------------------------------------------------------------------CTGCGCATACATAT-----A----------------------------TGTA----------------C--------GTGTG---------------CATCCTTT-TTTCCCTCG--------TCCTTGGCAAGTGGGCAACCCCGAATG-----------GAAAGCGTGGGAAATC-T-A-G----TTCATCATTAA------------------------AAAAAGGAAGTT-A-----AA-----ACATA-----------CTGCAAATCAG----------------------------------ACAGATA----ATTTATATAGTT--------TTTATGGTA----------------------GAA
droRho1 scf7180000762736:18863-19118 - TC----GACCAGAAA--ATAAAG-----GAA-ACA--GGAAAAAATGGGCCAAGCAAAGGTAAGCGAAATC--GG-----GAGT--GCACTACACA--------------CGCG--------------------------------------------------------T--------------------------------------------------------------------------------------------GAGATGTTT---------------------TATACG----------------T--------A-ATG---------------TATCCTTT-TTTCCTTCG--------TCCTTGGCAAGTGGGCAACCCCGAATG-----------GATAGCGTGGGAAATCTT---G----TTCAACACTAAG------------TTTATGG----AAATAGGAAGTGCT-----AC-----AGGCA-----------ATGCAAATCGG---------------------------AATGTTGATAGATA----ATTTATTTAATT--------TCTGTGGTA--GAGG--------------GCGTA
droBia1 scf7180000301754:5797510-5797763 - CGGTTCGACCAGAAT--CCAAGC-----GAA-GCA--G--CAAAATGGGCCAAGCAAAGGTAAGCGCAACC---G-----GGGT--GCAGCACGCGGGCCAA--------------------------------------------------------------------A---------------------------ACACCCT----------------------------------------------------GTG---------------------------------CATATG----------------T--------ATACG---------------CG-----T-GGTCCTTCG--------TCCTTGGCAAGTGGGCATCCCCGCCAC-----------AGGAGCGTGGGAAAATCT-A-G----TTCAGCACTGCG------------CTCCAGGTGTGCGACAGGAAGGGCT-----CCAGTCCAAGCC-----------GTGCCATTCGG---------------------------GGAGTTGAGAGATA----TGCTGTCA-----GACT----TG--G-------------------------GTA
droTak1 scf7180000415805:390493-390740 + TC----GACCAGAAA--CCAAAC-----GAA-ACA--GG-AAAAATGGGCCAAGCGAAGGTAAGCGGAATC--GG-----GAGT--GCAGCAAGAA----------------------------------------------------------------------------------------------------------TAT----------------------------------------------------AAAT-----A-------TGTA---------------TATACA----------------CAACCTTGTATCTG------------------------TATCCTTCG--------TCCTTGGCAAGTGGGCAACCCCAAATG-----------GGAAGCGTGGGAAAATCT-A-G----TTCAGCACTACA------------TTTAGGG----AAATAGGAAGTG-T-----GG-----AGTCA-----------ATGCAAATCGG---------------------------GAAATTGAGATATA----TTTTATTCAGTT--------TTGATGGTA----------------------GTG
droEug1 scf7180000409464:1493140-1493431 + TC----GACAAGAAA--TTATTT-----GAA-ACA--GG-AAAAATGGGCCAAGCAAAGGTAAGCAGAACC--GG-----AAAA--GCAGCACTCAGG-AAACATTTGTACACG--------------------------------------------------------G-----------------------G--CACACAAT---------------------------------------------T------TTA---------------------------------CATATT----------------T--------ATACG---------------TATTCTTT-TATCCTTCG--------TCCTTGGCAAGTGGGCAACCCCGAAAG-----------GAAATCGTGGGCAAATAC-A-G----TTTAACACTACA------------GTTATTC----GCAGAGATAGTTAT-----TT-----AAGCA-----------ATGCAATTCTGCATATT----TATGT-------------------ACATATA----TTTCATTCAGTT--------TTTATCGTA--GTACACGAATGTACTTATGTATA
dm3 chr2R:20829550-20829798 - TC----GACAAGA-----------------------------AAATGGGCCAAGCAAAGGTAAGCTGATT---AA-----GAGT--GCAGCACAATGTGAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACTTT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------ATACG---------------CATCCC-T-TATCCTTCG--------TCCTTGGCAAGTGGGCAGCCCCAAATG-----------GAAAGCGTGTAAAAGCCT-G-AGAGCTTGGGAACT------------AAATTTAAGG-----------------------------CATTTTA-AGTTATCCGATCC--ATCGG---------------------------AGGGTTATCAGATA----GTTTATTG-----GAATT--TTTAAGATA-------------------TCTACA
droSim2 2r:21292559-21292825 - dsi_25881 TC----GACCAGAAA--CTGAAA-----GAC-ACG--AG-AAAAATGGGCCAAGCAAAGGTAAGCTGAGT---AA-----GAGT--GCAGCACACTGTAAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACTAT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------ATGCG---------------CATCCC-T-TATCCTTCG--------TCCTTGGCAAGTGGGCAGCACCAAATG-----------GAAAGCGTGGAAAAGCCT-G-AGTGCTTGGCCACC------------AAATTTAAGG-----------------------------CATTTTA-AGTTATCCGATCC--ATCGG---------------------------AGGGTTGTCAGATA----GTTTATTG-----AAATT--TTTAAGATA-------------------TCTACA
droSec2 scaffold_23:686724-686990 - TC----GACCAGAAA--CTGAAA-----GAC-ACG--AG-AAAAATGGGCCAAGCAAAGGTAAGCTGAGT---AA-----GAGT--GCAGCACACTGTAAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACTAT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------ATGCG---------------CATCCC-T-TATCCTTCA--------TCCTTGGCAAGTGGACAGCACCAAATG-----------GAAAGCGTGGAAAAGCCT-G-AGTGCTTGGGCACC------------AAATTTAAGG-----------------------------CATTTTA-AGTTATCCGATCC--ATCGG---------------------------AGGGTTGTCAGATA----GTTTATTG-----AAATT--TTTAAGATA-------------------TCTACA
droYak3 2R:20793415-20793679 - TC----GACCAGAAA--CTGAAA-----GAC-ACA--GG--AAAATGGGCCAGGCAAAGGTAAGCTGAGT---GA-----GAGG--GCAGTACACTGGAAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACCAT----------------------------------------------------TCA---------------------------------CTTATG------TATGTATA--T--------AAGCG---------------CATCCC-T-TATCCTTCG--------ACCTTGGCAAGTGGGCAGCCCCGAATG-----------GAAAGCGTGGAAAAGGCT-A-AGAAATTG--CTCC------------TAATTGCAGA-----------------------------AATTTTAAAGTTATCCGATGC--ATTGA---------------------------AAAGTTGAGAGATA----GTTTATTG-----AAATT--TTTGA---------------------------GA
droEre2 scaffold_4845:22202188-22202458 - TC----GACCAGAAA--CTGAAA-----GAC-ACA--G--CAAAATGGGCCAAGCAAAGGTAAGCTGAGT---AA-----GAGT--GCAGCACACTGGGAAGCACATGCACACA--------------------------------------------------------G-----------------------G--CACACCAC----------------------------------------------------TCA---------------------------------CTTACG------TATGTACA--T--------ATGCG---------------CATCCC-T-TATCCTGCG--------TCCATGGCAAGTGGGCAGCCCCGAAGT-----------GAAAGCGTGAAAAAGGCT-G-AGAACTTGGGCACC------------AAGCTGAAGA-----------------------------CATTTTAAAGTTATTCGATCC--ATCGG---------------------------AAAGTTGGCAGATATGTAGTTTATTG-----AAATT--TTTAA---------------------------GA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CT----GCTGAAAAAGAAGAAACG-CCAT-A-AAA--GCAAAAAATGGGCCAAGTCAAGGTACGTAAAAGA--GA-----GAGC--GCTGCACACA----------------CA--------------------------------------------------------A-----------------------A--CACA----CTCA-------AAA------------------------------------------TTCACATGCTT---------------------CACATG----------------T--------ATGCG---------------TATCCTAT-TATCCT--------------GTGGCAAGTTGGCAGCCCCAAAAG-------G-ATAAAAGCGTGGGAAAACTT-T-G-----TAAATTGT-------AATTCAA--TTCG----TA-----AAAAGTGATATTC----------TTA-----------ATGTTATCTGG---------------------------GA-----------A----TTTTATCTCCTTA---------TATGTTA----------------------ATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................GAGC--GCTGCACACA----------------CA--------------------------------------------------------A-----------------------A--CAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................AAATGGGCCAAGTCAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCTCCTTA---------TATGTTA----------------------A..2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................CT--------------GTGGCAAGTTGGCAGCC.......................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGTGGGAAAACTT-T-G-----TAA.......................................................................................................................................................................................2311.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGTTGGCAGCCCCA....................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................T-TATCCT--------------GTGGCAAGTTGGCA..........................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................TATCCT--------------GTGGCAAGTTGGCAGC........................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC----------TTA-----------ATGTTATCTGG---------------------------GA-----------...........................................................2111.0010100000000
.............AAGAAGAAACG-CCAT-A-AAA--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................GCAAAAAATGGGCCAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................GGTACGTAAAAGA--GA-----GAGC--G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................CTAT-TATCCT--------------GTGGCAAGTT..............................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGGCAGCCCCAAAAG-------G-ATAA...................................................................................................................................................................................................................2111.0010100000000
.......................................AAAAAATGGGCCAAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................ATG----------------T--------ATGCG---------------TATCCTAT-TATC........................................................................................................................................................................................................................................................................2111.0010100000000
..........................................AAATGGGCCAAGTCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010100000000
droPer2
CT----GCTGAAAAAGAAGAAACG-CCAT-A-AAA--GCAAAAAATGGGCCAAGTCAAGGTACGTAAAAGA--GA-----GAGAGCGCTGCACACA----------------CA--------------------------------------------------------A-----------------------A--CACA----CTCA-------AAA------------------------------------------TTCACATGCTT---------------------CACATG----------------T--------ATGCG---------------TATCCTAT-TATCCT--------------GTGGCAAGTTGGCAGCCCCAAAAG-------G-ATAAAAGCGTGGGAAAACTT-CAA----TTCAAGATGAAATTTTAATTCAA--TTCG----TG-----AAAAGTGATATTC----------TTA-----------ATGTTATCTGG---------------------------GA-----------A----TTTTATC-----------------------------------------TCCTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................AT-A-AAA--GCAAAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
......................CG-CCAT-A-AAA--GCAAAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
.............AAGAAGAAACG-CCAT-A-AAA--G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............................T-A-AAA--GCAAAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
TT----GCACACA----CTTAAA--------------GA-CAAAATGGGCCAAGTCAAGGTACGTACACAC--AG-----ACAA--A-----------------------------------------------------------------------------------T-----------------------A--CACACTCT--------------------------------------------------------TTTA----------------------------TATGTACATATGTATGTATGTAT--------AGCTA---------------TATCCTGT-TATCCTTTA--------AACGCGACAAGTTGGCAGAGCTAAGAAAAAGCAGC-AATAAAGCGTGGGAAAAAAT-C-A----TACCATAC-------------AATTACAAAC-----------------------------TAAACTA-AGCTAATTAATTG--ATTAG---------------------------AAAGAAGCCCAAAA----CTAAAAC----------GCGTG--TGTTA-------------------ACAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................AA--------------GA-CAAAATGGGCCAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................AAAATGGGCCAAGTCAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................GCGACAAGTTGGCAGAGCTAA...................................................................................................................................................................................................................................2111.00100010
...................TAAA--------------GA-CAAAATGGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
..................................................................................................................................................................................................................................................................................................................................................................................AACGCGACAAGTTGGCAGAG.......................................................................................................................................................................................................................................2011.00100010
........................................CAAAATGGGCCAAGTCAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
droVir3
GC----TTAAGTAAA--TCAAGTG-CATT-TATAA--GG-AATAATGGGTCAAATCAAGGTAAATACCAAA--CA-----CAA----TCATACGTA------------------CAT------------ACAAATCTAGCTAT---GCACATATAATGTAACATTTTTAA-TGTTAATTTATCGAAACA-----G--CATA----CTCATAACATATTACCATGTGAGTGTGTATGTGTGTGTATATATAT------GCA---------------------------------TATATG------TATGTATA--T--------GTAAG---------------CTACCTGT-TATCC--------------TTTGACAAGTTGGCAACTCTGCTAT-------A-AGTTAAGCGTGGGAAAATTT-A-T-------AACATCATA------------TTTTGAA----TGATTAGAA----------------------------------------------------------------------------------------------------------ACTTC--TGTCTTTGTGT--G----------GCTGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................ATAA--GG-AATAATGGGTCAAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GAAACA-----G--CATA----CTCATAACATA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..............A--TCAAGTG-CATT-TATAA--GG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..............................TATAA--GG-AATAATGGGTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
..................CAAGTG-CATT-TATAA--GG-AATAATGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
................................TAA--GG-AATAATGGGTCAAATCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................T-------A-AGTTAAGCGTGGGAAAATT....................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................ATTTTTAA-TGTTAATTTATCGAAACA-----G--C.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................TT-TATAA--GG-AATAATGGGTCAAATCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATTTATCGAAACA-----G--CATA----................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
...............................ATAA--GG-AATAATGGGTCAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
...............................ATAA--GG-AATAATGGGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............................T-TATAA--GG-AATAATGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
.......................G-CATT-TATAA--GG-AATAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................TATAA--GG-AATAATGGGTCAAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GAGTGTGTATGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
C-----GACTGTA----CTTA-----------AAA--GC-AATAATGGGCCAAATCAGGGTAAGTACAATT--AC-----ATAA---TCGTGCCTT------------------TGTTAATATGTATTTACGAATGTATATGTGAAGCATATAAAATGCA---------A-TTTTAATTTATGTGCACACACATG--CTCA----CATA-------AAT--ATGTA------------------------T------TCC---------------------------------TTTATG------TGCCTATA--T--------AT--------------TAAGCTACCTGT-TATCC--------------TTTGACAAGCTGGCAACGCTGATAT-------A-TATAAAGCGTGGGAATATTT-A-T-------AGTTTCACA------------TGTTAAG----TGATTAGAA----------------------------------------------------------------------------------------------------------GCGTC--TGTTTATAAGT--------------GCGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................TATGTGCACACACATG--CTCA----CA..............................................................................................................................................................................................................................................................................................................................................................................................................................2214.004000040
....................................................................................................................................AATGTATATGTGAAGCATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003001002
...................................................................................................................................GAATGTATATGTGAAGCATATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000020
....................................................................................................................................AATGTATATGTGAAGCATATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................CAAATCAGGGTAAGTACAATT--GT-----G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................TATGTGCACACACATG--CTCA----CAT.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................................AAATGCA---------A-TTTTAATTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................AATGTATATGTGAAGCATATAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................AATGTATATGTGAAGCATATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droGri2
AA----CACCAAA-------------------TAA--GG-AAAGATGGGCCAAGTTAAGGTAAATACAAAAAC-AAACAAAAGAACGCTGTTAATG----------------TA--------------------------------------------------------ATGTTATTGTGAATGGACAAACGTG--GTTA----CATA-------TTA--ATGTA-------------------------------------------------------------------------ATTATGAAGGTGTGTAC--------AGATGTAGATAGGTCTTAAGCTACCTAT-TATCCTTTG--------T------CATGTTG----CTCTCAAAG-------C-TTTTGGGCGTGAGGAAATTATTTA----TTTAAAATAAAT--------------------------------------------------------------------------------------------------------------ACATAAA----TGATTATAA--------GCGTA--TGCTT----------------------CTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TC----GACAACA----CCAGCAGACCAGAA-ACA--GG-AAAAATGGGCCAAGTCAAGGTATGTGAAAC---GA-----AA----GCCGTCCGTC------------------CGTCAA-AGG-----------------------------------------------------------------------------------------------------------------------------------------TGGTGGTGTTTCCTGGGTAGCACCAGGCACAT----------------------C--------CTGCG---------------CATCCT---------TTC--------GTCTTGGCAAGTGGGCAGCCCCGCCTG----------TGCTGGCGTGGGAAATCCT---C----TTTAGTTTT-------GGAAGAA--CTCG----GGAA----------------------------------------------ATCGGCATGTT----GCTGGCCGGGAAAATCGAATGC-AGCAGATA----TTTTATTCAGTTT---------AATGGTA----------------------AT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................A-ACA--GG-AAAAATGGGCCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002110000
.........AACA----CCAGCAGACCAGAA-ACA--GG-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
..........................CAGAA-ACA--GG-AAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.C----GACAACA----CCAGCAGACCAGAA-AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
......GACAACA----CCAGCAGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................GACCAGAA-ACA--GG-AAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................GCAGACCAGAA-ACA--GG-AAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......GACAACA----CCAGCAGACCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................AA-ACA--GG-AAAAATGGGCCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................AT----------------------C--------CTGCG---------------CATCCT---------TTC--------GTCTTGGCAA.................................................................................................................................................................................................................................................2711.001010000
.........AACA----CCAGCAGACCAGAA-ACA--G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................GCAGACCAGAA-ACA--GG-AAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................GACCAGAA-ACA--GG-AAAAATGGGCCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.........................................AAAATGGGCCAAGTCAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251010000
droBip1
CGGTTCGACCAGAAA-----------------ACA--GG-AAAAATGGGCCAAGTCAAGGTATGTGAAGCGAA-AGCAGCGAGT--C-----CGTC------------------CGTCA--AGG-----------------------------------------------------------------------------------------------------------------------------------------CGGTGGTGTTTCCTGTATAGCACCAGCCGCAT----------------------T--------CTGCG---------------C---------ATCCTTCG--------GCCGTGGCAAGTGGGCAGCCCCGCATG-------G---CCTGGCGTGGGAAACTTT---C----TTTAGTTTT-------GGAAGGA--TTTT----AAAA----------------------------------------------ATCGGAATGTT----TTTGGACAGGAAAATCCAATTC-ACTTAATA----TTTTATTCAGTTT---------AATGGTA----------------------AT-SizeHit CountTotal NormTotal
No Reads
droKik1
TC----GACCAGAAA--ACAAAA------AA-ACAGGAA-AAATATGGGACAAGTCAAGGTACGTGGACTC--GG-----GGAA--GAAGCATTCAAT---------GTGTGTG--------------------------------------------------------T-----------------------G--TACACAC------------------------------------------------------------------CTCTTG-----------------TGTATA------CCGGTATA--T--------GTACG---------------CATCCTTTTCGTCCTGCGGGGCGGCTTGCTTGGCAAGTGGGCAGCCCTCTACG-------TTGCGAAAGCGTGGGAAAATCC-A-A----GTTGACAGTAGA------------TTATAGC----AAACAGGAAGTGCT---CTCC-----AGGCT------AT-AGATTT--CTCCA----------------------------------AGAACTA----TTTTATTTCGTGT---------CATGA----------------------CCATASizeHit CountTotal NormTotal
No Reads
droFic1
TC----GACGGGAAA--AA---------GAAACCA--AT-AAAAATGGGCCAAGCAAAGGTAAGCGGAATC--AG-----AAGT--GCAGCACACATGGAAGCGTTCGCACACA--------------------------------------------------------A-----------------------ACAAGCACAAT---------------------------------------------------------------TTCT---------------------CATGTG----------------T--------ATACG---------------CAT---------CCTTGG--------TCCTTGACGAGTTGGCAACCCCAAAAG-----------GGAACTGTGGAAAATT-T-A-G----ATAACCGCTTAG------------CTTTACT----TAATAGAGACTTCT-----CCA----AAGCA-----------ATGAAAAACGGGATATCGGCCTACAT-------------------ACATAAG----TGTTATTTAGTT--------TT--TGGTA----------------------GTASizeHit CountTotal NormTotal
No Reads
droEle1
TC----GACCAGAAA--ATAAAA-----GAA-ACA--GGAAAAAATGGGCCAAGCAAAGGTAAGCGAAATC--GG-----GAGT--GCACCGCCGTGTGTG-TGT----------------------------------------------------------------------------------------------------------------------------------------------CTGCGCATACATAT-----A----------------------------TGTA----------------C--------GTGTG---------------CATCCTTT-TTTCCCTCG--------TCCTTGGCAAGTGGGCAACCCCGAATG-----------GAAAGCGTGGGAAATC-T-A-G----TTCATCATTAA------------------------AAAAAGGAAGTT-A-----AA-----ACATA-----------CTGCAAATCAG----------------------------------ACAGATA----ATTTATATAGTT--------TTTATGGTA----------------------GAASizeHit CountTotal NormTotal
No Reads
droRho1
TC----GACCAGAAA--ATAAAG-----GAA-ACA--GGAAAAAATGGGCCAAGCAAAGGTAAGCGAAATC--GG-----GAGT--GCACTACACA--------------CGCG--------------------------------------------------------T--------------------------------------------------------------------------------------------GAGATGTTT---------------------TATACG----------------T--------A-ATG---------------TATCCTTT-TTTCCTTCG--------TCCTTGGCAAGTGGGCAACCCCGAATG-----------GATAGCGTGGGAAATCTT---G----TTCAACACTAAG------------TTTATGG----AAATAGGAAGTGCT-----AC-----AGGCA-----------ATGCAAATCGG---------------------------AATGTTGATAGATA----ATTTATTTAATT--------TCTGTGGTA--GAGG--------------GCGTASizeHit CountTotal NormTotal
No Reads
droBia1
CGGTTCGACCAGAAT--CCAAGC-----GAA-GCA--G--CAAAATGGGCCAAGCAAAGGTAAGCGCAACC---G-----GGGT--GCAGCACGCGGGCCAA--------------------------------------------------------------------A---------------------------ACACCCT----------------------------------------------------GTG---------------------------------CATATG----------------T--------ATACG---------------CG-----T-GGTCCTTCG--------TCCTTGGCAAGTGGGCATCCCCGCCAC-----------AGGAGCGTGGGAAAATCT-A-G----TTCAGCACTGCG------------CTCCAGGTGTGCGACAGGAAGGGCT-----CCAGTCCAAGCC-----------GTGCCATTCGG---------------------------GGAGTTGAGAGATA----TGCTGTCA-----GACT----TG--G-------------------------GTASizeHit CountTotal NormTotal
No Reads
droTak1
TC----GACCAGAAA--CCAAAC-----GAA-ACA--GG-AAAAATGGGCCAAGCGAAGGTAAGCGGAATC--GG-----GAGT--GCAGCAAGAA----------------------------------------------------------------------------------------------------------TAT----------------------------------------------------AAAT-----A-------TGTA---------------TATACA----------------CAACCTTGTATCTG------------------------TATCCTTCG--------TCCTTGGCAAGTGGGCAACCCCAAATG-----------GGAAGCGTGGGAAAATCT-A-G----TTCAGCACTACA------------TTTAGGG----AAATAGGAAGTG-T-----GG-----AGTCA-----------ATGCAAATCGG---------------------------GAAATTGAGATATA----TTTTATTCAGTT--------TTGATGGTA----------------------GTGSizeHit CountTotal NormTotal
No Reads
droEug1
TC----GACAAGAAA--TTATTT-----GAA-ACA--GG-AAAAATGGGCCAAGCAAAGGTAAGCAGAACC--GG-----AAAA--GCAGCACTCAGG-AAACATTTGTACACG--------------------------------------------------------G-----------------------G--CACACAAT---------------------------------------------T------TTA---------------------------------CATATT----------------T--------ATACG---------------TATTCTTT-TATCCTTCG--------TCCTTGGCAAGTGGGCAACCCCGAAAG-----------GAAATCGTGGGCAAATAC-A-G----TTTAACACTACA------------GTTATTC----GCAGAGATAGTTAT-----TT-----AAGCA-----------ATGCAATTCTGCATATT----TATGT-------------------ACATATA----TTTCATTCAGTT--------TTTATCGTA--GTACACGAATGTACTTATGTATASizeHit CountTotal NormTotal
No Reads
dm3
TC----GACAAGA-----------------------------AAATGGGCCAAGCAAAGGTAAGCTGATT---AA-----GAGT--GCAGCACAATGTGAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACTTT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------ATACG---------------CATCCC-T-TATCCTTCG--------TCCTTGGCAAGTGGGCAGCCCCAAATG-----------GAAAGCGTGTAAAAGCCT-G-AGAGCTTGGGAACT------------AAATTTAAGG-----------------------------CATTTTA-AGTTATCCGATCC--ATCGG---------------------------AGGGTTATCAGATA----GTTTATTG-----GAATT--TTTAAGATA-------------------TCTACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......GACAAGA-----------------------------AAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20114.001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CCCAAATG-----------GAAAGCGTGTAAAAGC.....................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAATGGGCCAAGCAAAGGTAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................ACAATGTGAAGCCCACGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
......GACAAGA-----------------------------AAATGGGCCAAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......GACAAGA-----------------------------AAATGGGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................AGGTAAGCTGATT---AA-----GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AATG-----------GAAAGCGTGTAAAAGCC....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................TGATT---AA-----GAGT--GCAGCACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T-G-AGAGCTTGGGAACT------------AAATT.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
........CAAGA-----------------------------AAATGGGCCAAGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CATCCC-T-TATCCTTCG--------TCCTT......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAAAAGCCT-G-AG..............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TAG---------------------------------CTTGTG----------------T--------ATACG---------------CATCCC-..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATCCTTCG--------TCCTTGGCAAGTGGG............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCC--ATCGG---------------------------AGGGTTA.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C----GACAAGA-----------------------------AAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGA-----------------------------AAATGGGCCAAGCAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AAAGGTAAGCTGATT---AA-----G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATG-----------GAAAGCGTGTAAAAGCCT-..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TATCCTTCG--------TCCTTGGCAAGTGGG............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGAACT------------AAATTTAAGG-----------------------------C..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCC--ATCGG---------------------------AGGGTTATCAGAT...........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AAGCTGATT---AA-----GAGT--GCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GTAAGCTGATT---AA-----GAGT--G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
........CAAGA-----------------------------AAATGGGCCAAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAATG-----------GAAAGCGTGTAAAAGC.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTGTAAAAGCCT-G-AGAGCTTG........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTGGGCAGCCCCAAATG-----------GA...................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CC-T-TATCCTTCG--------TCCTTGGCA..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAGA-----------------------------AAATGGGCCAAGCAAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GACAAGA-----------------------------AAATGGGCCAAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGATCC--ATCGG---------------------------AGGGTT..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCT-G-AGAGCTTGGGAACT------------AAA...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTA-AGTTATCCGATCC--A.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................AAATGGGCCAAGCAAAGGTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAGA-----------------------------AAATGGGCCAAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AGGTAAGCTGATT---AA-----GAGT--G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
.....................................................................................................................................................................................................................................................................................................................................TACG---------------CATCCC-T-TATCCTTCG--------TCCT.......................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGA-----------------------------AAATGGGCCAAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAATGGGCCAAGCAAAGGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................AGT--GCAGCACAATGTGAAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......ACAAGA-----------------------------AAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAAGA-----------------------------AAATGGGCCAAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGTGGGCAGCCCCAAATG-----------GAAAGCG..............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................ACACTTT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------A........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...........GA-----------------------------AAATGGGCCAAGCAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TC----GACCAGAAA--CTGAAA-----GAC-ACG--AG-AAAAATGGGCCAAGCAAAGGTAAGCTGAGT---AA-----GAGT--GCAGCACACTGTAAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACTAT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------ATGCG---------------CATCCC-T-TATCCTTCG--------TCCTTGGCAAGTGGGCAGCACCAAATG-----------GAAAGCGTGGAAAAGCCT-G-AGTGCTTGGCCACC------------AAATTTAAGG-----------------------------CATTTTA-AGTTATCCGATCC--ATCGG---------------------------AGGGTTGTCAGATA----GTTTATTG-----AAATT--TTTAAGATA-------------------TCTACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........CCAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300000000000000
......GACCAGAAA--CTGAAA-----GAC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300300000000000000
............................GAC-ACG--AG-AAAAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000000000200000
TC----GACCAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
......GACCAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201100000000000000
...........................................................GTAAGCTGAGT---AA-----GAGT--GCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATCGG---------------------------AGGGTTGTCAGATA----......................................................2011.00100100000000000000
.C----GACCAGAAA--CTGAAA-----GAC-ACG--AG-G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.........CAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......ACCAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................CGCACACA--------------------------------------------------------T-----------------------G--CACACTAT----------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...................GAAA-----GAC-ACG--AG-AAAAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
......GACCAGAAA--CTGAAA-----GAC-ACG--AG-AAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
..................TGAAA-----GAC-ACG--AG-AAAAATGGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.C----GACCAGAAA--CTGAAA-----GAC-AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
............AAA--CTGAAA-----GAC-ACG--AG-AAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000001000000000
..........AGAAA--CTGAAA-----GAC-ACG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.C----GACCAGAAA--CTGAAA-----GAC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.................CTGAAA-----GAC-ACG--AG-AAAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.C----GACCAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
......GACCAGAAA--CTGAAA-----GAC-ACG--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
droSec2
TC----GACCAGAAA--CTGAAA-----GAC-ACG--AG-AAAAATGGGCCAAGCAAAGGTAAGCTGAGT---AA-----GAGT--GCAGCACACTGTAAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACTAT----------------------------------------------------TAG---------------------------------CTTGTG----------------T--------ATGCG---------------CATCCC-T-TATCCTTCA--------TCCTTGGCAAGTGGACAGCACCAAATG-----------GAAAGCGTGGAAAAGCCT-G-AGTGCTTGGGCACC------------AAATTTAAGG-----------------------------CATTTTA-AGTTATCCGATCC--ATCGG---------------------------AGGGTTGTCAGATA----GTTTATTG-----AAATT--TTTAAGATA-------------------TCTACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................TGAAA-----GAC-ACG--AG-AAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020020
......GACCAGAAA--CTGAAA-----GAC-ACG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020110
............................GAC-ACG--AG-AAAAATGGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................AA-----GAC-ACG--AG-AAAAATGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------AGGGTTGTCAGATA----GTTTATTG-----AAA......................................2611.0010010
............AAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........CCAGAAA--CTGAAA-----GAC-ACG--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCC--ATCGG---------------------------AGGGTTG.................................................................2111.0010001
......GACCAGAAA--CTGAAA-----GAC-ACG--AG-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCC--ATCGG---------------------------AGGGTTGT................................................................2211.0010001
droYak3
TC----GACCAGAAA--CTGAAA-----GAC-ACA--GG--AAAATGGGCCAGGCAAAGGTAAGCTGAGT---GA-----GAGG--GCAGTACACTGGAAAGCCCACGCACACA--------------------------------------------------------T-----------------------G--CACACCAT----------------------------------------------------TCA---------------------------------CTTATG------TATGTATA--T--------AAGCG---------------CATCCC-T-TATCCTTCG--------ACCTTGGCAAGTGGGCAGCCCCGAATG-----------GAAAGCGTGGAAAAGGCT-A-AGAAATTG--CTCC------------TAATTGCAGA-----------------------------AATTTTAAAGTTATCCGATGC--ATTGA---------------------------AAAGTTGAGAGATA----GTTTATTG-----AAATT--TTTGA---------------------------GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................GAC-ACA--GG--AAAATGGGCCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200010010000
............AAA--CTGAAA-----GAC-ACA--GG--AAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00220000000000
............................GAC-ACA--GG--AAAATGGGCCAGGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................................CA--GG--AAAATGGGCCAGGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.C----GACCAGAAA--CTGAAA-----GAC-ACA--GG--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.C----GACCAGAAA--CTGAAA-----GAC-ACA--GG--AAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
............................GAC-ACA--GG--AAAATGGGCCAGGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.................................CA--GG--AAAATGGGCCAGGCAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................A-----GAC-ACA--GG--AAAATGGGCCAGGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................GCAGTACACTGGAAAGCCCACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................GAAA-----GAC-ACA--GG--AAAATGGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
droEre2
TC----GACCAGAAA--CTGAAA-----GAC-ACA--G--CAAAATGGGCCAAGCAAAGGTAAGCTGAGT---AA-----GAGT--GCAGCACACTGGGAAGCACATGCACACA--------------------------------------------------------G-----------------------G--CACACCAC----------------------------------------------------TCA---------------------------------CTTACG------TATGTACA--T--------ATGCG---------------CATCCC-T-TATCCTGCG--------TCCATGGCAAGTGGGCAGCCCCGAAGT-----------GAAAGCGTGAAAAAGGCT-G-AGAACTTGGGCACC------------AAGCTGAAGA-----------------------------CATTTTAAAGTTATTCGATCC--ATCGG---------------------------AAAGTTGGCAGATATGTAGTTTATTG-----AAATT--TTTAA---------------------------GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................AC-ACA--G--CAAAATGGGCCAAGCAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
................................ACA--G--CAAAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
................................................................................GAGT--GCAGCACACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................CA--G--CAAAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCGATCC--ATCGG---------------------------AAA.....................................................................2011.0010001000
.................................................................................................................................................................................................................................................................................................................................................................TATCCTGCG--------TCCATGGCAAGTGG.............................................................................................................................................................................................................................................2311.0010001000
......................................................................................................................................................................................................................................................................................................................ACA--T--------ATGCG---------------CATCCC-T-TATCC.......................................................................................................................................................................................................................................................................2111.0010100000
...................GAAA-----GAC-ACA--G--CAAAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
..............................C-ACA--G--CAAAATGGGCCAAGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
.C----GACCAGAAA--CTGAAA-----GAC-ACA--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.C----GACCAGAAA--CTGAAA-----GAC-AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................A-----GAC-ACA--G--CAAAATGGGCCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
......GACCAGAAA--CTGAAA-----GAC-ACA--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.C----GACCAGAAA--CTGAAA-----GAC-ACA--G--CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010

Generated: 06/11/2015 at 07:01 PM