ID:

dps_954

 Coordinate:

3:1881011-1881161 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.4 -16.3 -15.9

Flybase annnotation

exon [dpse_GLEANR_15149:3]; CDS [Dpse\GA24638-cds]; intron [Dpse\GA24638-in]

No Repeatable elements found

mature
  1. Unknown_group_54:34362-34386 +
  2. Unknown_group_146:9836-9860 +
  3. Unknown_group_52:11140-11164 +
  4. Unknown_group_52:14588-14612 +
  5. Unknown_singleton_959:6643-6667 +
  6. 3:754610-754634 +
  7. Unknown_group_188:9096-9120 +
  8. 4_group4:6574935-6574959 +
  9. XR_group6:10245223-10245247 +
  10. XL_group1a:1445274-1445298 +
  11. XL_group1a:3171286-3171310 +
  12. Unknown_singleton_695:1094-1118 +
  13. Unknown_singleton_2050:452-476 +
  14. Unknown_singleton_3287:1859-1883 +
  15. Unknown_singleton_1842:807-831 +
  16. Unknown_singleton_1550:3275-3299 +
  17. Unknown_singleton_424:1902-1926 +
  18. Unknown_singleton_421:166-190 +
  19. Unknown_singleton_769:577-601 +
  20. Unknown_singleton_3730:1670-1694 +
  21. Unknown_group_13:8931-8955 -
  22. Unknown_group_95:11034-11058 -
  23. Unknown_group_59:30884-30908 -
  24. Unknown_group_154:40397-40421 -
  25. 3:431563-431587 -
  26. 3:3129727-3129751 -
  27. dps_1225  3:14380901-14380925 -
  28. Unknown_group_542:2327-2351 -
  29. 4_group2:61285-61309 -
  30. 4_group4:5742628-5742652 -
  31. 4_group4:6132546-6132570 -
  32. Unknown_group_452:3025-3049 -
  33. XR_group6:9807477-9807501 -
  34. XL_group1a:3359959-3359983 -
  35. Unknown_singleton_1243:491-515 -
  36. Unknown_singleton_2695:3356-3380 -
  37. Unknown_singleton_1136:1381-1405 -
  38. Unknown_group_211:241-265 -
  39. Unknown_singleton_2532:806-830 -
  40. Unknown_singleton_3445:1942-1966 -
  41. Unknown_singleton_1968:1529-1553 +
  42. Unknown_singleton_2278:7391-7415 +
  43. 2:12114657-12114681 +
  44. 2:24620254-24620278 +
  45. 2:24625661-24625685 +
  46. 2:30658250-30658274 +
  47. XL_group3a:1670992-1671016 +
  48. Unknown_singleton_2664:14-38 +
  49. 4_group4:5844985-5845009 +
  50. 4_group4:6524952-6524976 +
  51. Unknown_group_285:1237-1261 +
  52. Unknown_group_669:5825-5849 +
  53. XL_group1a:416856-416880 +
  54. XL_group1a:820315-820339 +
  55. XL_group1a:6862395-6862419 +
  56. Unknown_singleton_2473:1036-1060 +
  57. Unknown_group_652:535-559 +
  58. Unknown_singleton_1667:159-183 +
  59. Unknown_singleton_3794:440-464 +
  60. Unknown_singleton_2410:118-142 +
  61. XL_group3b:71053-71077 +
  62. 4_group4:5951701-5951725 +
  63. 4_group4:6239276-6239300 +
  64. XL_group1a:8664493-8664517 +
  65. Unknown_singleton_1181:421-445 +
  66. Unknown_group_710:3566-3590 +
  67. Unknown_singleton_2471:1974-1998 +
  68. Unknown_singleton_3110:512-536 +
  69. Unknown_group_10:38084-38108 +
  70. Unknown_group_14:52615-52639 +
  71. Unknown_singleton_3985:700-724 +
  72. Unknown_group_222:2159-2183 +
  73. 3:1433514-1433538 +
  74. dps_954  3:1881014-1881038 +
  75. 3:3130637-3130661 +
  76. 2:9063849-9063873 +
  77. XL_group3a:1306148-1306172 +
  78. Unknown_group_374:2226-2250 +
  79. Unknown_group_486:3099-3123 +
  80. Unknown_group_669:8909-8933 +
  81. XR_group6:400757-400781 +
  82. XL_group1a:3607106-3607130 +
  83. Unknown_singleton_2913:3815-3839 +
  84. Unknown_singleton_2092:2033-2057 +
  85. Unknown_group_725:933-957 +
  86. Unknown_group_291:9015-9039 +
  87. Unknown_singleton_2626:1277-1301 +
  88. Unknown_singleton_1391:2856-2880 +
  89. Unknown_group_461:5836-5860 -
  90. Unknown_group_14:44374-44398 -
  91. XL_group1e:797164-797188 -
  92. Unknown_group_7:118125-118149 -
  93. Unknown_group_33:1074-1098 -
  94. 3:260133-260157 -
  95. 3:13999410-13999434 -
  96. 2:17996729-17996753 -
  97. Unknown_group_242:24257-24281 -
  98. 4_group1:267451-267475 -
  99. Unknown_group_809:2235-2259 -
  100. XL_group1a:4409620-4409644 -
  101. Unknown_singleton_2748:28726-28750 -
  102. Unknown_singleton_1718:1351-1375 -
  103. Unknown_singleton_1996:433-457 -
  104. Unknown_group_365:3386-3410 -
  105. Unknown_group_218:10966-10990 -
  106. Unknown_singleton_2439:2377-2401 -
  107. Unknown_singleton_3791:641-665 -
  108. Unknown_singleton_78:1124-1148 -
star
  1. Unknown_group_295:7340-7361 +
  2. Unknown_group_39:127096-127117 +
  3. Unknown_group_18:31498-31519 +
  4. 4_group5:873273-873294 +
  5. XL_group3b:855-876 +
  6. Unknown_group_19:5896-5917 +
  7. Unknown_group_19:43018-43039 +
  8. Unknown_group_25:13348-13369 +
  9. 2:7487564-7487585 +
  10. 2:30658080-30658101 +
  11. Unknown_group_188:11291-11312 +
  12. 4_group1:2831337-2831358 +
  13. XL_group1a:757290-757311 +
  14. XL_group1a:5322786-5322807 +
  15. Unknown_group_178:6946-6967 +
  16. Unknown_group_850:4555-4576 +
  17. Unknown_singleton_2239:2-23 +
  18. Unknown_singleton_834:399-420 +
  19. Unknown_singleton_2649:871-892 +
  20. Unknown_singleton_3806:3651-3672 +
  21. Unknown_group_315:17381-17402 +
  22. XL_group1e:187779-187800 +
  23. XL_group1e:9278195-9278216 +
  24. Unknown_group_208:11139-11160 +
  25. 3:786160-786181 +
  26. 3:1173245-1173266 +
  27. dps_954  3:1881053-1881074 +
  28. 2:12391604-12391625 +
  29. 2:18776919-18776940 +
  30. 2:19492732-19492753 +
  31. 2:25146986-25147007 +
  32. 4_group1:2796076-2796097 +
  33. Unknown_group_9:32389-32410 +
  34. Unknown_group_9:38421-38442 +
  35. Unknown_group_22:30142-30163 +
  36. XR_group6:1976607-1976628 +
  37. XL_group1a:2001280-2001301 +
  38. XL_group1a:2787278-2787299 +
  39. Unknown_singleton_2955:107-128 +
  40. Unknown_group_246:9647-9668 +
  41. Unknown_group_43:71952-71973 +
  42. Unknown_group_94:56108-56129 +
  43. Unknown_group_358:884-905 +
  44. XL_group1e:576825-576846 +
  45. XL_group1e:1124238-1124259 +
  46. Unknown_singleton_2278:7430-7451 +
  47. 3:4954423-4954444 +
  48. 3:8109132-8109153 +
  49. XL_group3a:1933881-1933902 +
  50. Unknown_group_388:15850-15871 +
  51. Unknown_singleton_2941:457-478 +
  52. Unknown_group_285:1276-1297 +
  53. Unknown_group_669:5864-5885 +
  54. XL_group1a:416895-416916 +
  55. Unknown_group_652:574-595 +
  56. Unknown_singleton_3794:479-500 +
  57. Unknown_singleton_99:2903-2924 +
  58. Unknown_singleton_1337:2104-2125 +
  59. Unknown_singleton_2265:798-819 +
  60. Unknown_singleton_2410:157-178 +
  61. XL_group3b:71092-71113 +
  62. Unknown_group_146:9875-9896 +
  63. Unknown_group_52:11179-11200 +
  64. Unknown_group_52:14627-14648 +
  65. Unknown_group_75:8250-8271 +
  66. Unknown_group_282:13739-13760 +
  67. 4_group4:584630-584651 +
  68. 4_group4:5766531-5766552 +
  69. 4_group4:6239315-6239336 +
  70. 4_group4:6574974-6574995 +
  71. XL_group1a:1445313-1445334 +
  72. XL_group1a:8664532-8664553 +
  73. Unknown_singleton_1181:460-481 +
  74. Unknown_group_710:3605-3626 +
  75. Unknown_singleton_695:1133-1154 +
  76. Unknown_singleton_424:1941-1962 +
  77. Unknown_singleton_421:205-226 +
  78. Unknown_singleton_769:616-637 +
  79. Unknown_singleton_3110:551-572 +
  80. Unknown_singleton_3908:214-235 +
  81. Unknown_group_10:38123-38144 +
  82. Unknown_group_24:6530-6551 +
  83. Unknown_group_12:3464-3485 +
  84. Unknown_singleton_1982:73-94 +
  85. Unknown_group_50:16780-16801 +
  86. Unknown_group_124:20490-20511 +
  87. 2:11265631-11265652 +
  88. 2:27049448-27049469 +
  89. 2:30527485-30527506 +
  90. Unknown_group_316:11793-11814 +
  91. 4_group4:4948537-4948558 +
  92. XR_group6:9229591-9229612 +
  93. XL_group1a:5413-5434 +
  94. XL_group1a:602930-602951 +
  95. Unknown_group_175:459-480 +
  96. Unknown_singleton_1765:1874-1895 +
  97. Unknown_singleton_4022:1305-1326 +
  98. Unknown_singleton_2434:1420-1441 +
  99. Unknown_group_297:7324-7345 +
  100. Unknown_group_78:23405-23426 +
  101. Unknown_group_16:11014-11035 +
  102. Unknown_group_470:6674-6695 +
  103. Unknown_singleton_988:1571-1592 +
  104. Unknown_group_30:32287-32308 +
  105. Unknown_group_188:9135-9156 +
  106. XR_group6:1872011-1872032 +
  107. XL_group1a:307626-307647 +
  108. Unknown_singleton_243:1134-1155 +
  109. Unknown_singleton_3950:421-442 +
  110. Unknown_singleton_2266:479-500 +
  111. Unknown_singleton_2940:3998-4019 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTTTGTCGTGTCGTTTAATATTAGACGCCGCCTGCTAGAGGAAAGCCATACTGACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGACCGCAGCAACTCACAACGTTCCCCCTCGTTTTTTTAATATATGTAACTATTTCAGGAATTTGAAGTATCTATAATTATAGACCTACTTAAAAACACATTTCCACTATTTCAGACATTCTGTGTGGTTTCGAAACGCTTTCGCAAGAATTACATCCATCGTTT
*****************************************************...........(((...((((((.(((((((.((....)).))))))))))..))).))).***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 M059
embryo
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 GSM444067
head
.....................................................GACTTAGTATCGGGTATAACTGTAG............................................................................................................................................................................. 25 0 20 31.00 620 620 0 0 0 0 0 0
.................................................TACTGACTTAGTATCGGGTATAACTG................................................................................................................................................................................ 26 0 20 5.45 109 0 105 0 0 0 4 0
....................................................TGACTTAGTATCGGGTATAACTGTA.............................................................................................................................................................................. 25 0 20 5.30 106 106 0 0 0 0 0 0
............................................................................................CAGCAACTCACAACGTTCCCCC......................................................................................................................................... 22 0 20 4.75 95 0 0 81 0 14 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACG................................................................................................................................................ 26 0 10 4.40 44 0 36 8 0 0 0 0
.....................................................GACTTAGTATCGGGTATAACTGTA.............................................................................................................................................................................. 24 0 20 4.40 88 0 0 4 84 0 0 0
.............................................................................................AGCAACTCACAACGTTCCCCCTCG...................................................................................................................................... 24 0 20 4.25 85 0 85 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACGT............................................................................................................................................... 27 0 10 3.90 39 0 25 13 0 0 1 0
.................................................................................TGCGGTGACCGCAGCAACTCACAAC................................................................................................................................................. 25 0 10 3.20 32 0 24 8 0 0 0 0
............................................................................................CAGCAACTCACAACGTTCCCCCT........................................................................................................................................ 23 0 20 2.90 58 0 0 58 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAA.................................................................................................................................................. 24 0 10 2.70 27 0 26 1 0 0 0 0
..............................................................................................GCAACTCACAACGTTCCCCC......................................................................................................................................... 20 0 20 1.75 35 0 35 0 0 0 0 0
....TGTCGTGTCGTTTAATATTAGACGC.............................................................................................................................................................................................................................. 25 0 20 1.45 29 13 14 0 1 1 0 0
.....................................................GACTTAGTATCGGGTATAAC.................................................................................................................................................................................. 20 0 20 1.30 26 0 26 0 0 0 0 0
.................................................................GGTATAACTGTAGAGTTGCGG..................................................................................................................................................................... 21 0 20 1.20 24 0 0 0 1 23 0 0
..................................................................................GCGGTGACCGCAGCAACTCACAACG................................................................................................................................................ 25 0 10 1.20 12 0 12 0 0 0 0 0
................................................ATACTGACTTAGTATCGGGTA...................................................................................................................................................................................... 21 0 20 1.15 23 0 23 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACGA............................................................................................................................................... 27 1 14 1.00 14 0 12 2 0 0 0 0
.....................................................GACTTAGTATCGGGTATAACTGT............................................................................................................................................................................... 23 0 20 0.95 19 0 0 4 0 0 15 0
.................................................................................TGCGGTGACCGCAGCAACTCACA................................................................................................................................................... 23 0 10 0.90 9 0 7 1 0 0 1 0
....TGTCGTGTCGTTTAATATTAGACG............................................................................................................................................................................................................................... 24 0 20 0.85 17 0 13 0 1 2 1 0
TCTTTGTCGTGTCGTTTAATAT..................................................................................................................................................................................................................................... 22 0 20 0.70 14 0 14 0 0 0 0 0
.....................................................GACTTAGTATCGGGTATAACTGTAGAG........................................................................................................................................................................... 27 0 20 0.60 12 0 0 0 0 12 0 0
..............................................................TCGGGTATAACTGTAGAGTTGC....................................................................................................................................................................... 22 0 20 0.50 10 0 0 0 0 10 0 0
...................................................................................................TCACAACGTTCCCCCTCGTTT................................................................................................................................... 21 0 20 0.45 9 0 9 0 0 0 0 0
........................................................TTAGTATCGGGTATAACTGTA.............................................................................................................................................................................. 21 0 20 0.45 9 0 9 0 0 0 0 0
....TGTCGTGTCGTTTAATATTAGACGCC............................................................................................................................................................................................................................. 26 0 20 0.45 9 0 8 0 0 0 1 0
TCTTTGTCGTGTCGTTTAATATTAGA................................................................................................................................................................................................................................. 26 0 20 0.35 7 4 0 0 0 3 0 0
....TGTCGTGTCGTTTAATATTAGAC................................................................................................................................................................................................................................ 23 0 20 0.35 7 2 4 0 1 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCAC.................................................................................................................................................... 22 0 10 0.30 3 0 2 1 0 0 0 0
..................................................................................GCGGTGACCGCAGCAACTCACAACGT............................................................................................................................................... 26 0 10 0.30 3 0 3 0 0 0 0 0
......................................................................................TGACCGCAGCAACTCACAACGTTCCC........................................................................................................................................... 26 0 11 0.27 3 0 2 1 0 0 0 0
....TGTCGTGTCGTTTAATATTAGA................................................................................................................................................................................................................................. 22 0 20 0.25 5 3 0 0 0 2 0 0
.................................................................................TTCGGTGACCGCAGCAACTCACAAC................................................................................................................................................. 25 1 20 0.25 5 0 0 5 0 0 0 0
...............................................................................................CAACTCACAACGTTCCCCCTCGTTTTT................................................................................................................................. 27 0 20 0.20 4 0 4 0 0 0 0 0
....TGTCGTGTCGTTTAATATTAGACGCCG............................................................................................................................................................................................................................ 27 0 20 0.20 4 0 4 0 0 0 0 0
..TTTGTCGTGTCGTTTAATATTAGACG............................................................................................................................................................................................................................... 26 0 20 0.20 4 1 1 0 0 2 0 0
................................................................................TTGCGGTGACCGCAGCAACTCACAAC................................................................................................................................................. 26 0 10 0.20 2 0 1 1 0 0 0 0
................................................................................TTGCGGTGACCGCAGCAACTCACAA.................................................................................................................................................. 25 0 10 0.20 2 0 1 1 0 0 0 0
......................................................................................TGACCGCAGCAACTCACAACGTTCCCC.......................................................................................................................................... 27 0 10 0.20 2 0 1 1 0 0 0 0
..................................................................................GCGGTGACCGCAGCAACTCACAAC................................................................................................................................................. 24 0 10 0.20 2 0 2 0 0 0 0 0
.....GTCGTGTCGTTTAATATTAGACGC.............................................................................................................................................................................................................................. 24 0 20 0.20 4 0 4 0 0 0 0 0
.......................................................................................GACCGCAGCAACTCACAACGTTC............................................................................................................................................. 23 0 11 0.18 2 0 2 0 0 0 0 0
......................................................................................TGACCGCAGCAACTCACAACGTTC............................................................................................................................................. 24 0 11 0.18 2 0 2 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACGC............................................................................................................................................... 27 1 12 0.17 2 0 0 2 0 0 0 0
......................................................ACTTAGTATCGGGTATAACT................................................................................................................................................................................. 20 0 20 0.15 3 0 3 0 0 0 0 0
...............................................................CGGGTATAACTGTAGAGTTGCG...................................................................................................................................................................... 22 0 20 0.15 3 0 3 0 0 0 0 0
..TTTGTCGTGTCGTTTAATATTAGACGC.............................................................................................................................................................................................................................. 27 0 20 0.15 3 3 0 0 0 0 0 0
.....................................................GACTTAGTATCGGGTATAACTG................................................................................................................................................................................ 22 0 20 0.15 3 0 0 0 0 0 3 0
.................................................................................TTCGGTGACCGCAGCAACTCACAACGT............................................................................................................................................... 27 1 20 0.15 3 0 1 2 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACA................................................................................................................................................ 26 1 20 0.15 3 0 3 0 0 0 0 0
...................................................................TATAACTGTAGAGTTGCGGTGACCG............................................................................................................................................................... 25 0 8 0.13 1 0 0 0 0 1 0 0
.................................................................................TGCGGTGACCGCAGCAACTCAAA................................................................................................................................................... 23 1 16 0.13 2 0 2 0 0 0 0 0
.......................................................................ACTGTAGAGTTGCGGTGAC................................................................................................................................................................. 19 0 8 0.13 1 0 1 0 0 0 0 0
.......................................................................ACTGTAGAGTTGCGGTGACC................................................................................................................................................................ 20 0 8 0.13 1 0 1 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCAA.................................................................................................................................................... 22 1 17 0.12 2 0 2 0 0 0 0 0
.........................................................................TGTAGAGTTGCGGTGACCGCAGC........................................................................................................................................................... 23 0 9 0.11 1 0 1 0 0 0 0 0
......................................................................................TGACCGCAGCAACTCACAACGTTCCCCC......................................................................................................................................... 28 0 10 0.10 1 0 1 0 0 0 0 0
....TGTCGTGTCGTTTAATATTA................................................................................................................................................................................................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0
...........................................................................TAGAGTTGCGGTGACCGCAG............................................................................................................................................................ 20 0 10 0.10 1 0 0 0 0 0 1 0
.................................................TACTGACTTAGTATCGGGTATAACT................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0 0
................................................................................TGGCGGTGACCGCAGCAACTCACAACGT............................................................................................................................................... 28 1 10 0.10 1 0 0 1 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAAA................................................................................................................................................. 25 1 10 0.10 1 0 1 0 0 0 0 0
...................................................................TATAACTGTAGAGTTGCGGGGAC................................................................................................................................................................. 23 1 10 0.10 1 0 1 0 0 0 0 0
..................................................................................GCGGTGACCGCAGCAACTCACA................................................................................................................................................... 22 0 10 0.10 1 0 1 0 0 0 0 0
.................................................................................TTCGGTGACCGCAGCAACTCACA................................................................................................................................................... 23 1 20 0.10 2 0 0 2 0 0 0 0
.......................................................................................GACCGCAGCAACTCACAACGTTCCCCC......................................................................................................................................... 27 0 10 0.10 1 0 1 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAAAA................................................................................................................................................ 26 2 20 0.10 2 0 2 0 0 0 0 0
......................................................................................TGACCGCAGCAACTCACAACGTTCCCCCT........................................................................................................................................ 29 0 10 0.10 1 0 1 0 0 0 0 0
..................................................................................GCGGTGACCGCAGCAACTCACAA.................................................................................................................................................. 23 0 10 0.10 1 0 1 0 0 0 0 0
..................................................................................GCGGTGACCGCAGCAACTCACAAA................................................................................................................................................. 24 1 10 0.10 1 0 1 0 0 0 0 0
.................................................................................TTCGGTGACCGCAGCAACTCACAACG................................................................................................................................................ 26 1 20 0.10 2 0 0 2 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACGTT.............................................................................................................................................. 28 0 10 0.10 1 0 0 1 0 0 0 0
................................................................................TTGCGGTGACCGCAGCAACTC...................................................................................................................................................... 21 0 10 0.10 1 0 1 0 0 0 0 0
.....GTCGTGTCGTTTAATATTAGACG............................................................................................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACC................................................................................................................................................... 23 1 10 0.10 1 0 1 0 0 0 0 0
...................................................................................CGGTGACCGCAGCAACTCACAACG................................................................................................................................................ 24 0 10 0.10 1 0 1 0 0 0 0 0
...................................................................................................TCACAACGTTCCCCCTCG...................................................................................................................................... 18 0 20 0.10 2 0 2 0 0 0 0 0
..........................................................................GTAGAGTTGCGGTGACCGC.............................................................................................................................................................. 19 0 10 0.10 1 0 0 0 0 0 1 0
.CTTTGTCGTGTCGTTTAATATTAGA................................................................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0 0
.......................................................CTTAGTATCGGGTATAACTGTAGAG........................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0
......................................................................................TGACCGCAGCAACTCACAACGTTCC............................................................................................................................................ 25 0 11 0.09 1 0 1 0 0 0 0 0
........................................................................................ACCGCAGCAACTCACAACGTTCCCCC......................................................................................................................................... 26 0 11 0.09 1 0 1 0 0 0 0 0
......................................................................................TGACCTCAGCAACTCACAACGTTCC............................................................................................................................................ 25 1 12 0.08 1 0 0 1 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCGCAACG................................................................................................................................................ 26 1 12 0.08 1 0 1 0 0 0 0 0
................................................................................TTGCGGTGACCGCAGCCACTCACAACGC............................................................................................................................................... 28 2 12 0.08 1 0 0 0 0 0 1 0
.................................................................................TGCGGTGACCGCAGCAACTCGCAACGT............................................................................................................................................... 27 1 12 0.08 1 0 1 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAGCTCACAAC................................................................................................................................................. 25 1 13 0.08 1 0 1 0 0 0 0 0
.......................................AGGAAAGCCATACTGACTTAG............................................................................................................................................................................................... 21 0 13 0.08 1 0 1 0 0 0 0 0
.................................................................................TGCGGGGACCGCAGCAACTCACAACG................................................................................................................................................ 26 1 14 0.07 1 0 0 1 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACGTA.............................................................................................................................................. 28 1 14 0.07 1 0 0 1 0 0 0 0
..................................................................................GCGGTTACCGCAGCAACTCACA................................................................................................................................................... 22 1 16 0.06 1 0 1 0 0 0 0 0
......................................................................................TTACCGCAGCAACTCACAACGTTCCCC.......................................................................................................................................... 27 1 16 0.06 1 0 0 1 0 0 0 0
.....................................................................................TTGACCGCAGCAACTCACAACGTTC............................................................................................................................................. 25 1 17 0.06 1 0 1 0 0 0 0 0
.................................................................................TGCGGTGACCGCAGCAACTCACAACGTAA............................................................................................................................................. 29 2 17 0.06 1 0 1 0 0 0 0 0
...........TCGTTTAATATTAGACGCCGCCTGC....................................................................................................................................................................................................................... 25 0 18 0.06 1 0 1 0 0 0 0 0
...........TCGTTTAATATTAGACGCCGCCTG........................................................................................................................................................................................................................ 24 0 18 0.06 1 0 1 0 0 0 0 0
...........TCGTTTAATATTAGACGCCGCC.......................................................................................................................................................................................................................... 22 0 18 0.06 1 0 0 1 0 0 0 0
.........TGTCGTTTAATATTAGACGCCGCCT......................................................................................................................................................................................................................... 25 0 18 0.06 1 0 1 0 0 0 0 0
...........................................................................TAGAGTTGCGGTGACCGCAGT........................................................................................................................................................... 21 1 19 0.05 1 0 1 0 0 0 0 0
.........................................................................TGTAGAGTTGCGGTGACCGCAAA........................................................................................................................................................... 23 2 19 0.05 1 0 1 0 0 0 0 0
............CGTTTAATATTAGACGCCGCCT......................................................................................................................................................................................................................... 22 0 19 0.05 1 0 1 0 0 0 0 0
......TCGTGTCGTTTAATATTAGACGCCG............................................................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0
........................................................TTAGTATCGGGTATAACTGTAGAGT.......................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................TCACAACGTTCCCCCTCGTTTT.................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0 0
..............................................................TCGGGTATAACTGTAGAGTTGCGGT.................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0
.....GTCGTGTCGTTTAATATTAGA................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0 0
....TGTCGTGTCGTTTAATATTAGACGA.............................................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0
....TTTCGGGTCGTTTAATATTAGACGCC............................................................................................................................................................................................................................. 26 2 20 0.05 1 0 0 1 0 0 0 0
....TGTCGTGTCGTTTAATATTAGATG............................................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0
......TCGTGTCGTTTAATATTAGA................................................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0
.....GTCGTGTCGTTTAATATTAGACGCCG............................................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0 0
...............................................................CGGGTATAACTGTAGAGT.......................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0
.....GTCGTGTCGTTTAATATTAGACGCC............................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0 0
TCTTTGTCGTGTCGTTTTATATTAGA................................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0
.......................................................CTTAGTATCGGGTATAACTGTAGAGT.......................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0
.....GTCGTGTCGCTTAATATTAGA................................................................................................................................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0 0 0
.................................................TACTGACTTAGTATCGGGTAAAACTG................................................................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................TTCGGTGACCGAAGCAACTCACAACGT............................................................................................................................................... 27 2 20 0.05 1 0 0 1 0 0 0 0
...TTGTCGTGTCGTTTAATATTAGACG............................................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0
................................................ATACTGACTTAGTATCGGGTATA.................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0
.............................................................ATCGGGTATAACTGTAG............................................................................................................................................................................. 17 0 20 0.05 1 1 0 0 0 0 0 0
....................................................TGACTGAGTATCGGGTATAACTGTA.............................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0
.........................................................TAGTATCGGGTATAACTGTAGAGTTG........................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0
................................................................GGGTATAACTGTAGAGTTGCGGTG................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0
....TGTCGTGTCGTTTAATATTAGACGCCA............................................................................................................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0 0
....TGTCGTGTCGTTTACTATTAGACGC.............................................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0
...TTGTCGTGTCGTTTAATATTAGACGC.............................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0
.CTTTGTCGTGTCGTTTAATAT..................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0
............................................................TATCGGGTATAACTGTAGA............................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0
....................................................TGACTTAGTATCGGGTATAA................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1
....TGTCGTGTCGTTTAATATTAGAA................................................................................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0 0
....................................................TGACTTAGTATCGGGTATA.................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1
....TGTCGTGTCGTTTAATATTAGATGC.............................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................GACTTAGTATCGGGTATAACTGTAGA............................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 1 0 0 0
....TGTCGCGTCGTTTAATATTAGACG............................................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0
...................................................CTGACTTAGTATCGGGTATAA................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
...TTGTCGTGTCGTTTAATATTAGACGCC............................................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0
......TCGTGTCGTTTAATATTAGACG............................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AGAAACAGCACAGCAAATTATAATCTGCGGCGGACGATCTCCTTTCGGTATGACTGAATCATAGCCCATATTGACATCTCAACGCCACTGGCGTCGTTGAGTGTTGCAAGGGGGAGCAAAAAAATTATATACATTGATAAAGTCCTTAAACTTCATAGATATTAATATCTGGATGAATTTTTGTGTAAAGGTGATAAAGTCTGTAAGACACACCAAAGCTTTGCGAAAGCGTTCTTAATGTAGGTAGCAAA
*****************************************************************************************************************************************...........(((...((((((.(((((((.((....)).))))))))))..))).))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 M059
embryo
 SRR902011
testis
 GSM444067
head
 SRR902010
ovaries
 M022
male body
...............................................................................CAACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 23 0 10 1.70 17 14 0 0 1 1 1 0 0
................................................................................AACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 22 0 10 1.70 17 14 3 0 0 0 0 0 0
..............................................................................TCAACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 24 0 10 1.30 13 13 0 0 0 0 0 0 0
........................................................................................TGGCGTCGTTGAGTGTTGCA............................................................................................................................................... 20 0 12 1.25 15 14 0 1 0 0 0 0 0
........................................................................................................TGCAAGGGGGAGCAAAGGAATTAT........................................................................................................................... 24 2 4 1.25 5 5 0 0 0 0 0 0 0
........................................................................................................TGCAAGGGGGAGCAAAAAAATT............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................CAAGGGGGAGCAAAGGAATTAT........................................................................................................................... 22 2 4 0.75 3 1 0 0 0 1 0 1 0
.................................................................................ACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 21 0 10 0.70 7 6 0 0 1 0 0 0 0
........................................................................................TGGCGTCGTTGAGTGTTGC................................................................................................................................................ 19 0 12 0.67 8 5 0 2 0 0 1 0 0
...................................................................................GCCACTGGCGTCGTTGAGT..................................................................................................................................................... 19 0 10 0.60 6 5 0 1 0 0 0 0 0
..................................................................................CGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 20 0 10 0.60 6 5 0 0 1 0 0 0 0
.........................................................................................................GCAAGGAGGAGCAAAAAAATT............................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................AAACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 23 1 11 0.45 5 4 1 0 0 0 0 0 0
........................................................................................................TGCAAGGGGGAGCAAAAAAAT.............................................................................................................................. 21 0 7 0.43 3 2 0 0 1 0 0 0 0
...................................................................................GCCACTGGCGTCGTTGAGTGTT.................................................................................................................................................. 22 0 10 0.40 4 3 0 0 1 0 0 0 0
......................................CTCCTTTCGGTATGACTGAATCAT............................................................................................................................................................................................. 24 0 13 0.38 5 4 0 0 0 1 0 0 0
.GAAACAGCACAGCAAATTATAAT................................................................................................................................................................................................................................... 23 0 20 0.35 7 7 0 0 0 0 0 0 0
..................................................................................CGCCACTGGCGTCGTTGAGTGTT.................................................................................................................................................. 23 0 10 0.30 3 3 0 0 0 0 0 0 0
.........................................................................................................GCAAGGGGGAGCAAAGGAATTAT........................................................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................CAACGCCACTGGCGTCGTTGAGTGT................................................................................................................................................... 25 0 10 0.20 2 2 0 0 0 0 0 0 0
.............................................................................CTCAACGCCACTGGCGTCGTTGAGTGT................................................................................................................................................... 27 0 10 0.20 2 2 0 0 0 0 0 0 0
......................................................................................................GTTGCAAGGGGGAGCAAAAAAAT.............................................................................................................................. 23 0 5 0.20 1 1 0 0 0 0 0 0 0
...........................................................................................................AAGGGGGAGCAAAGGAATTAT........................................................................................................................... 21 2 5 0.20 1 0 0 0 1 0 0 0 0
..............................................................................TCAACGCCACTGGCGTCGTTGAGTGTT.................................................................................................................................................. 27 0 10 0.20 2 2 0 0 0 0 0 0 0
.............................................................................................................GGGGGAGCAAAGGAATTAT........................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0
.............................................................................CTCAACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 25 0 10 0.20 2 2 0 0 0 0 0 0 0
.......................................................................................CTGGCGTCGTTGAGTGTTGC................................................................................................................................................ 20 0 11 0.18 2 0 0 2 0 0 0 0 0
.......................................TCCTTTCGGTATGACTGAATCATA............................................................................................................................................................................................ 24 0 13 0.15 2 2 0 0 0 0 0 0 0
.......................................TCCTTTCGGTATGACTGAATCAT............................................................................................................................................................................................. 23 0 13 0.15 2 1 0 0 1 0 0 0 0
......................................CTCCTTTCGGTATGACTGAATCATA............................................................................................................................................................................................ 25 0 13 0.15 2 2 0 0 0 0 0 0 0
...........................................TTCGGTATGACTGAATCATAGC.......................................................................................................................................................................................... 22 0 14 0.14 2 2 0 0 0 0 0 0 0
......................................................................................................GTTGCAAGGGAGAGCAAAAAAAT.............................................................................................................................. 23 1 7 0.14 1 1 0 0 0 0 0 0 0
........................................CCTTTCGGTATGACTGAATCATA............................................................................................................................................................................................ 23 0 14 0.14 2 2 0 0 0 0 0 0 0
........................................CCTTTCGGTATGACTGAATCAT............................................................................................................................................................................................. 22 0 14 0.14 2 2 0 0 0 0 0 0 0
........................................................................................TGGCGTCGTTGAGTCTTGCA............................................................................................................................................... 20 1 15 0.13 2 1 0 0 0 0 1 0 0
..............................................................AGCCCATATTGACATCTCAACGCCACT.................................................................................................................................................................. 27 0 8 0.13 1 1 0 0 0 0 0 0 0
........................................................................................................AGCAAGGGGGAGCAAAAAAAT.............................................................................................................................. 21 1 8 0.13 1 1 0 0 0 0 0 0 0
.................................................................CCATATTGACATCTCAACGCCACT.................................................................................................................................................................. 24 0 8 0.13 1 1 0 0 0 0 0 0 0
..............................................................................TCAACGCCACTGGCGTCGTTGAGTGT................................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0 0
................................................................................AACGCCACTGGCGTCGTTGAG...................................................................................................................................................... 21 0 10 0.10 1 1 0 0 0 0 0 0 0
...................................................................................GCCACTGGCGTCGTTGAG...................................................................................................................................................... 18 0 10 0.10 1 1 0 0 0 0 0 0 0
....................................................................................CCACTGGCGTCGTTGAGTGTT.................................................................................................................................................. 21 0 10 0.10 1 1 0 0 0 0 0 0 0
..................................................................................CGCCACTGGCGTCGTTGAG...................................................................................................................................................... 19 0 10 0.10 1 1 0 0 0 0 0 0 0
...............................................................................CAACGCCACTGGCGTCGTTGAGTG.................................................................................................................................................... 24 0 10 0.10 1 1 0 0 0 0 0 0 0
.........................................................................................................GCAAGGGGGAGCAAAAGAAT.............................................................................................................................. 20 1 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................CACCGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 23 1 10 0.10 1 0 1 0 0 0 0 0 0
...................................................................................GCCACTGGCGTCGTTGAGTG.................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0 0 0 0 0
.......................................................................................TTGGCGTCGTTGAGTGTTGC................................................................................................................................................ 20 1 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................CAACGCCACTGGCGTCGTTGAGTGTT.................................................................................................................................................. 26 0 10 0.10 1 1 0 0 0 0 0 0 0
.......................................................................................CTGGCGTCGTTGAGTGTTGCAA.............................................................................................................................................. 22 0 11 0.09 1 0 0 0 0 0 0 0 1
...............................................................................AACCGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 23 2 11 0.09 1 0 1 0 0 0 0 0 0
.....................................................................................................................AAAAAAATTATGTTCACTGAT................................................................................................................. 21 3 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................CGCCACTGGCGTCTTTGAGT..................................................................................................................................................... 20 1 11 0.09 1 0 1 0 0 0 0 0 0
................................................................................AACGCCACTAGCGTCGTTGAGT..................................................................................................................................................... 22 1 11 0.09 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TGAACTTGTGTGTAAAGGTTA......................................................... 21 3 11 0.09 1 0 0 1 0 0 0 0 0
..............................................................................TCACCGCCACTGGCGTCGTTGACT..................................................................................................................................................... 24 2 11 0.09 1 0 1 0 0 0 0 0 0
................................................................................AACGCCACTGGCGTCGTTGAGG..................................................................................................................................................... 22 1 12 0.08 1 1 0 0 0 0 0 0 0
..............................................................................ACAACGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0 0
...............................................................................AACCGCCACTGGCCTCGTTGAGT..................................................................................................................................................... 23 3 12 0.08 1 0 1 0 0 0 0 0 0
..................................................................................CGCCACTGGCGTCGTTGATT..................................................................................................................................................... 20 1 12 0.08 1 0 0 0 1 0 0 0 0
.................................................................................GCGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 21 1 13 0.08 1 0 1 0 0 0 0 0 0
...................................................................................TCCACTGGCGTCGTTGAGTGT................................................................................................................................................... 21 1 13 0.08 1 0 0 0 0 0 1 0 0
................................................................................TCCGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 22 2 13 0.08 1 0 1 0 0 0 0 0 0
.........................................CTTTCGGTATGACTGAATCATA............................................................................................................................................................................................ 22 0 14 0.07 1 1 0 0 0 0 0 0 0
................................................................................ACCGCCCCTGGCGTCGTTGAGT..................................................................................................................................................... 22 2 14 0.07 1 0 1 0 0 0 0 0 0
................................................................................AACGCGACTGGCGTCGTAGAGT..................................................................................................................................................... 22 2 14 0.07 1 0 1 0 0 0 0 0 0
..........................................TTTCGGTATGACTGAATCATA............................................................................................................................................................................................ 21 0 14 0.07 1 1 0 0 0 0 0 0 0
.......................................................................................CTGGCGTAGTTGAGTGTTGCA............................................................................................................................................... 21 1 14 0.07 1 0 0 0 0 0 1 0 0
.................................................................................TTGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 21 2 15 0.07 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAAGCGTTCTTATTGCAGC....... 19 3 15 0.07 1 0 0 1 0 0 0 0 0
................................................................................AGTGCCACTGGCGTCGTTGAGT..................................................................................................................................................... 22 2 16 0.06 1 0 1 0 0 0 0 0 0
.........ACAGCAAATTATAATCTGCGGCGGACG....................................................................................................................................................................................................................... 27 0 18 0.06 1 0 0 1 0 0 0 0 0
.........ACATCAAATTATAATCTGCGGCGGAC........................................................................................................................................................................................................................ 26 1 18 0.06 1 0 0 0 1 0 0 0 0
........................................................................................TGGCGTCGTTGAGTGTCGC................................................................................................................................................ 19 1 18 0.06 1 0 0 1 0 0 0 0 0
...........AGCAAATTATAATCTGCGGCGGAC........................................................................................................................................................................................................................ 24 0 18 0.06 1 1 0 0 0 0 0 0 0
..........CAGCAAATTATAATCTGCGGCGGA......................................................................................................................................................................................................................... 24 0 18 0.06 1 0 0 1 0 0 0 0 0
..............AAATTATAATCTGCGGCGGAC........................................................................................................................................................................................................................ 21 0 19 0.05 1 0 0 0 0 0 0 1 0
.............CAAATTATAATCTGCGGCGG.......................................................................................................................................................................................................................... 20 0 19 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................AGTGTTGCAAGGGGGAGCAAAA.................................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0 0 0 0
.......................................................................................TTGGCGTCGTTGAGTGTT.................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................TGCAAGGGGGAGCAAGAAAAT.............................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................TTGGCGTCGTTGAGTCTTGCA............................................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0
..................................................TGACTGAATCATAGCCCATATTGA................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................TCCGGTATGACTGAATCAT............................................................................................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................TTGCAAGGGGGAGCAAAAGACTGAT........................................................................................................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................TGGCTTCGTTGAGTGTTGC................................................................................................................................................ 19 1 20 0.05 1 0 0 1 0 0 0 0 0
.....CAGCACAGCAAATTATAATCTGCGG............................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................TTCGGTATGGCTGGATCATAGC.......................................................................................................................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0
..AAACAGCACAGCAAATTAT...................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:1880961-1881211 + dps_954 TCTTTGTCGTG---T--CGTT---------------------TAATATTAGACGCCGCCT-----------GCTAGAGGAAAGCCATACT------------GACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGACCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTTT-TAA----TATATGTAACTATTTCAGGAATTTGAAGTATCT--ATAATTATAGACCTACTTAAAAACACATTTCCA-----CTATTTCAGACATTCTGTGTGGTTTCGAAACGCTTTCGCAAGAATTACATCCATCGTTT
droPer2 scaffold_2:2063697-2063942 + dpe_1023 TCTTTGTCGTG---T--CGTT---------------------TAATATTAG-CGGCGTCT-----------GCCGGAGGAAAGCCATACT------------GACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTTT-TAA----T----ATAACTATTTCAGGAATTTGAAGTATCT--ATAATTATAGACCTACTTAAAAACACATTTCCA-----CTATTTCAGACATTCTGTGTGGTTTCGAAACGCTTTCGCAAGAATTACATCCATCGTTT
droWil2 scf2_1100000004510:1822060-1822125 + ATTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGCAGACATTTTGTGTGGTGTCGAAACGATTTCGTAAAAATTATATACATCGCTT
droVir3 scaffold_12823:2386320-2386378 + CTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGACATTTTGCGTAGTATCAAAGCGATTCCGAAAGAATTACATACACCGGTT
droMoj3 scaffold_6496:1749671-1749741 + ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---------ACTTTTTCTTCACAGACATTTTGTGTGGTGTCGAAGCGTTTCCGAAAGAATTATATACATCGTTT
droGri2 scaffold_15245:15684668-15684723 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGACTTTCTGTGTGGTGTCAAAGCGATTCCGCAAGAATTACATACATCGCTT
droAna3 scaffold_13266:12080265-12080330 + ACATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGCAGACGTTCTGTGTGGTGTCGAAGCGATTCCGAAAAAACTATATCCACCGCTT
droBip1 scf7180000396804:42524-42621 - CGGCTTT----------------------------------------------------------------------------------------------------------------AACTGCAAGGTTATATCAACTTCGGCTCC----GCCCGAAGTTAGCTTTCCTTTCTT-GTT----AATATATCAGTGTTTCAGGGTGGTGAGGTCTG-------------------------------------------------------------------------------------------------TAT
droKik1 scf7180000302366:929660-929716 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAGACGTTCTGCGTGGTGTCCAAGCGGTTTCGCAAGAACTACATCCATCGCTT
droFic1 scf7180000453858:706068-706124 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAGACCTTTTGCGTGGTTTCAAAACGGTTCCGCAAGAACTACATCCACCGCTT
droEle1 scf7180000491214:2170384-2170439 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGACCTTCTGTGTGGTGTCCAAGCGGTTCCGCAAGAACTATATCCACCGCTT
droRho1 scf7180000780226:224845-224942 + TCCCTTT-----------------------------------------------------------------------------------------------ACCTGAGTAACGGGTAT---CTGATAGTCGGGGC----------ACCCGACTATAGCGTTCTTTCTTGTTTTTT-AAA----TCTAGTGACCCTTTTCAAAAGTTTGAA---------------------------------------------------------------------------------------------------------
droBia1 scf7180000301754:5757587-5757643 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACCTTCTGCGTGGTGTCCAAGCGGTTCCGGAAAAACTACATCCACCGCTT
droTak1 scf7180000415566:3203-3386 + TCCCTTTAGCTGAGTTACGATTATTAGTCGGGACACCAACCC-GAC-----ACAGCG---TTCGCACTCCCTT----------------T------------AGCTGAGTGACGGGTAT---TAGATAGTCGGGAC------AACAACCCGACTATAGCGTTCTCTCTTGTTTTATTTAG----TAT-TATAGATATTTCATAATTACAAATTACTT--ATAAC--TAAACATATTTAA-----------------------------------------------------------------------------
droEug1 scf7180000405389:17781-17953 + TTCCTCT------------------------------------GACAATAGGTGGCGCATTGTGAATTTCCACT--AGCAAAATAATATTTTAAAATTTTGTAAAACAGTAACGGGTAT---CTTATAGTCGCGGC----------ACCCGACTATAGCGTTTCCTCTTGTTTTTT-TA---------TACAATTATTC-AAAAATC-GAA-CAT-----CAATTTTGGACTCAATCAAAAA--------------------------------------------------------------------------
dm3 chr2R:20791779-20791853 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGCGCTTTTTTC-----AAATTCCAGACCTTCTGTGTAGTATCTAAGCGGTTCCGGAAGAACTACATCCATCGCTT
droSim2 2r:21254502-21254575 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGCGCTTTTT-C-----AAATTTCAGACCTTCTGTGTAGTATCCAAGCGGTTCCGGAAGAACTACATCCATCGCTT
droSec2 scaffold_23:648767-648841 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGCGCTTTTTTC-----AAATTTCAGACCTTCTGTGTAGTATCCAAGCGGTTCCGGAAGAACTACATCCATCGCTT
droYak3 v2_chrUn_002:46410-46529 + ACT---------------------------------------------------------------------------------------------------AGCTGAGTAACGGGTAT---CAGATAGTCGGGGA----------ACTCGACTATAGCGTTCTCTCTTGTTTTTT-TATTATTTCT-TATTATTA--------TTTTGTAGTATTTTTTTATTATTAGATTTGCCAAAAAA--------------------------------------------------------------------------
droEre2 scaffold_4845:22161794-22161850 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACCTTCTGTGTGGTATCCAAGCGGTTCCGGAAGAACTACATCCATCGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCTTTGTCGTG---T--CGTT---------------------TAATATTAGACGCCGCCT-----------GCTAGAGGAAAGCCATACT------------GACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGACCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTTT-TAA----TATATGTAACTATTTCAGGAATTTGAAGTATCT--ATAATTATAGACCTACTTAAAAACACATTTCCA-----CTATTTCAGACATTCTGTGTGGTTTCGAAACGCTTTCGCAAGAATTACATCCATCGTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................GACTTAGTATCGGGTATAACTGTAG.............................................................................................................................................................................................252031.00620000000062000
......................................................................................TACT------------GACTTAGTATCGGGTATAACTG................................................................................................................................................................................................26205.45109010500400000
.........................................................................................T------------GACTTAGTATCGGGTATAACTGTA..............................................................................................................................................................................................25205.30106000000010600
.............................................................................................................................................CAGCAAC----TCACAACGTTCCCCC.....................................................................................................................................................22204.7595008100000140
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACG............................................................................................................................................................26104.404403680000000
......................................................................................................GACTTAGTATCGGGTATAACTGTA..............................................................................................................................................................................................24204.408800400084000
..............................................................................................................................................AGCAAC----TCACAACGTTCCCCCTCG..................................................................................................................................................24204.258508500000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACGT...........................................................................................................................................................27103.9039025130100000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAAC.............................................................................................................................................................25103.203202480000000
.............................................................................................................................................CAGCAAC----TCACAACGTTCCCCCT....................................................................................................................................................23202.905800580000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAA..............................................................................................................................................................24102.702702610000000
...............................................................................................................................................GCAAC----TCACAACGTTCCCCC.....................................................................................................................................................20201.753503500000000
....TGTCGTG---T--CGTT---------------------TAATATTAGACGC.....................................................................................................................................................................................................................................................................25201.4529014000011310
......................................................................................................GACTTAGTATCGGGTATAAC..................................................................................................................................................................................................20201.302602600000000
..................................................................................................................GGTATAACTGTAGAGTTGCGG.....................................................................................................................................................................................21201.202400000010230
...................................................................................................................................GCGGTGACCGCAGCAAC----TCACAACG............................................................................................................................................................25101.201201200000000
.....................................................................................ATACT------------GACTTAGTATCGGGTA......................................................................................................................................................................................................21201.152302300000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACGA...........................................................................................................................................................27141.001401220000000
......................................................................................................GACTTAGTATCGGGTATAACTGT...............................................................................................................................................................................................23200.951900401500000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACA...............................................................................................................................................................23100.9090710100000
....TGTCGTG---T--CGTT---------------------TAATATTAGACG......................................................................................................................................................................................................................................................................24200.851701300101020
TCTTTGTCGTG---T--CGTT---------------------TAATAT............................................................................................................................................................................................................................................................................22200.701401400000000
......................................................................................................GACTTAGTATCGGGTATAACTGTAGAG...........................................................................................................................................................................................27200.601200000000120
...............................................................................................................TCGGGTATAACTGTAGAGTTGC.......................................................................................................................................................................................22200.501000000000100
........................................................................................................................................................TCACAACGTTCCCCCTCGTTT...............................................................................................................................................21200.4590900000000
.........................................................................................................TTAGTATCGGGTATAACTGTA..............................................................................................................................................................................................21200.4590900000000
....TGTCGTG---T--CGTT---------------------TAATATTAGACGCC....................................................................................................................................................................................................................................................................26200.4590800100000
TCTTTGTCGTG---T--CGTT---------------------TAATATTAGA........................................................................................................................................................................................................................................................................26200.3570000000430
....TGTCGTG---T--CGTT---------------------TAATATTAGAC.......................................................................................................................................................................................................................................................................23200.3570400001200
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCAC................................................................................................................................................................22100.3030210000000
...................................................................................................................................GCGGTGACCGCAGCAAC----TCACAACGT...........................................................................................................................................................26100.3030300000000
.......................................................................................................................................TGACCGCAGCAAC----TCACAACGTTCCC.......................................................................................................................................................26110.2730210000000
....TGTCGTG---T--CGTT---------------------TAATATTAGA........................................................................................................................................................................................................................................................................22200.2550000000320
................................................................................................................................................CAAC----TCACAACGTTCCCCCTCGTTTTT.............................................................................................................................................27200.2040400000000
....TGTCGTG---T--CGTT---------------------TAATATTAGACGCCG...................................................................................................................................................................................................................................................................27200.2040400000000
..TTTGTCGTG---T--CGTT---------------------TAATATTAGACG......................................................................................................................................................................................................................................................................26200.2040100000120
.................................................................................................................................TTGCGGTGACCGCAGCAAC----TCACAAC.............................................................................................................................................................26100.2020110000000
.................................................................................................................................TTGCGGTGACCGCAGCAAC----TCACAA..............................................................................................................................................................25100.2020110000000
.......................................................................................................................................TGACCGCAGCAAC----TCACAACGTTCCCC......................................................................................................................................................27100.2020110000000
...................................................................................................................................GCGGTGACCGCAGCAAC----TCACAAC.............................................................................................................................................................24100.2020200000000
.....GTCGTG---T--CGTT---------------------TAATATTAGACGC.....................................................................................................................................................................................................................................................................24200.2040400000000
........................................................................................................................................GACCGCAGCAAC----TCACAACGTTC.........................................................................................................................................................23110.1820200000000
.......................................................................................................................................TGACCGCAGCAAC----TCACAACGTTC.........................................................................................................................................................24110.1820200000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACGC...........................................................................................................................................................27120.1720020000000
.......................................................................................................ACTTAGTATCGGGTATAACT.................................................................................................................................................................................................20200.1530300000000
................................................................................................................CGGGTATAACTGTAGAGTTGCG......................................................................................................................................................................................22200.1530300000000
..TTTGTCGTG---T--CGTT---------------------TAATATTAGACGC.....................................................................................................................................................................................................................................................................27200.1530000000300
......................................................................................................GACTTAGTATCGGGTATAACTG................................................................................................................................................................................................22200.1530000300000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACA............................................................................................................................................................26200.1530300000000
....................................................................................................................TATAACTGTAGAGTTGCGGTGACCG...............................................................................................................................................................................2580.1310000000010
........................................................................................................................ACTGTAGAGTTGCGGTGAC.................................................................................................................................................................................1980.1310100000000
........................................................................................................................ACTGTAGAGTTGCGGTGACC................................................................................................................................................................................2080.1310100000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCAA................................................................................................................................................................22170.1220200000000
..........................................................................................................................TGTAGAGTTGCGGTGACCGCAGC...........................................................................................................................................................................2390.1110100000000
.......................................................................................................................................TGACCGCAGCAAC----TCACAACGTTCCCCC.....................................................................................................................................................28100.1010100000000
....TGTCGTG---T--CGTT---------------------TAATATTA..........................................................................................................................................................................................................................................................................20200.1020000000020
............................................................................................................................TAGAGTTGCGGTGACCGCAG............................................................................................................................................................................20100.1010000100000
......................................................................................TACT------------GACTTAGTATCGGGTATAACT.................................................................................................................................................................................................25200.1020000000200
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAAA.............................................................................................................................................................25100.1010100000000
...................................................................................................................................GCGGTGACCGCAGCAAC----TCACA...............................................................................................................................................................22100.1010100000000
........................................................................................................................................GACCGCAGCAAC----TCACAACGTTCCCCC.....................................................................................................................................................27100.1010100000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAAAA............................................................................................................................................................26200.1020200000000
.......................................................................................................................................TGACCGCAGCAAC----TCACAACGTTCCCCCT....................................................................................................................................................29100.1010100000000
...................................................................................................................................GCGGTGACCGCAGCAAC----TCACAA..............................................................................................................................................................23100.1010100000000
...................................................................................................................................GCGGTGACCGCAGCAAC----TCACAAA.............................................................................................................................................................24100.1010100000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACGTT..........................................................................................................................................................28100.1010010000000
.................................................................................................................................TTGCGGTGACCGCAGCAAC----TC..................................................................................................................................................................21100.1010100000000
.....GTCGTG---T--CGTT---------------------TAATATTAGACG......................................................................................................................................................................................................................................................................23200.1020200000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACC...............................................................................................................................................................23100.1010100000000
....................................................................................................................................CGGTGACCGCAGCAAC----TCACAACG............................................................................................................................................................24100.1010100000000
........................................................................................................................................................TCACAACGTTCCCCCTCG..................................................................................................................................................18200.1020200000000
...........................................................................................................................GTAGAGTTGCGGTGACCGC..............................................................................................................................................................................19100.1010000100000
.CTTTGTCGTG---T--CGTT---------------------TAATATTAGA........................................................................................................................................................................................................................................................................25200.1020000000200
........................................................................................................CTTAGTATCGGGTATAACTGTAGAG...........................................................................................................................................................................................25200.1020200000000
.......................................................................................................................................TGACCGCAGCAAC----TCACAACGTTCC........................................................................................................................................................25110.0910100000000
.........................................................................................................................................ACCGCAGCAAC----TCACAACGTTCCCCC.....................................................................................................................................................26110.0910100000000
............................................................................AGGAAAGCCATACT------------GACTTAG...............................................................................................................................................................................................................21130.0810100000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACGTA..........................................................................................................................................................28140.0710010000000
..................................................................................................................................TGCGGTGACCGCAGCAAC----TCACAACGTAA.........................................................................................................................................................29170.0610100000000
..............T--CGTT---------------------TAATATTAGACGCCGCCT-----------GC...................................................................................................................................................................................................................................................25180.0610100000000
..............T--CGTT---------------------TAATATTAGACGCCGCCT-----------G....................................................................................................................................................................................................................................................24180.0610100000000
..............T--CGTT---------------------TAATATTAGACGCCGCC.................................................................................................................................................................................................................................................................22180.0610010000000
.........TG---T--CGTT---------------------TAATATTAGACGCCGCCT-----------.....................................................................................................................................................................................................................................................25180.0610100000000
............................................................................................................................TAGAGTTGCGGTGACCGCAGT...........................................................................................................................................................................21190.0510100000000
..........................................................................................................................TGTAGAGTTGCGGTGACCGCAAA...........................................................................................................................................................................23190.0510100000000
.................CGTT---------------------TAATATTAGACGCCGCCT-----------.....................................................................................................................................................................................................................................................22190.0510100000000
......TCGTG---T--CGTT---------------------TAATATTAGACGCCG...................................................................................................................................................................................................................................................................25200.0510100000000
.........................................................................................................TTAGTATCGGGTATAACTGTAGAGT..........................................................................................................................................................................................25200.0510100000000
........................................................................................................................................................TCACAACGTTCCCCCTCGTTTT..............................................................................................................................................22200.0510100000000
...............................................................................................................TCGGGTATAACTGTAGAGTTGCGGT....................................................................................................................................................................................25200.0510000000010
.....GTCGTG---T--CGTT---------------------TAATATTAGA........................................................................................................................................................................................................................................................................21200.0510000000010
....TGTCGTG---T--CGTT---------------------TAATATTAGACGA.....................................................................................................................................................................................................................................................................25200.0510100000000
......TCGTG---T--CGTT---------------------TAATATTAGA........................................................................................................................................................................................................................................................................20200.0510000000100
.....GTCGTG---T--CGTT---------------------TAATATTAGACGCCG...................................................................................................................................................................................................................................................................26200.0510100000000
................................................................................................................CGGGTATAACTGTAGAGT..........................................................................................................................................................................................18200.0510000000010
.....GTCGTG---T--CGTT---------------------TAATATTAGACGCC....................................................................................................................................................................................................................................................................25200.0510100000000
........................................................................................................CTTAGTATCGGGTATAACTGTAGAGT..........................................................................................................................................................................................26200.0510100000000
...TTGTCGTG---T--CGTT---------------------TAATATTAGACG......................................................................................................................................................................................................................................................................25200.0510100000000
.....................................................................................ATACT------------GACTTAGTATCGGGTATA....................................................................................................................................................................................................23200.0510100000000
..............................................................................................................ATCGGGTATAACTGTAG.............................................................................................................................................................................................17200.0510000000100
..........................................................................................................TAGTATCGGGTATAACTGTAGAGTTG........................................................................................................................................................................................26200.0510000000100
.................................................................................................................GGGTATAACTGTAGAGTTGCGGTG...................................................................................................................................................................................24200.0510100000000
....TGTCGTG---T--CGTT---------------------TAATATTAGACGCCA...................................................................................................................................................................................................................................................................27200.0510100000000
...TTGTCGTG---T--CGTT---------------------TAATATTAGACGC.....................................................................................................................................................................................................................................................................26200.0510000000100
.CTTTGTCGTG---T--CGTT---------------------TAATAT............................................................................................................................................................................................................................................................................21200.0510000000010
.............................................................................................................TATCGGGTATAACTGTAGA............................................................................................................................................................................................19200.0510100000000
.........................................................................................T------------GACTTAGTATCGGGTATAA...................................................................................................................................................................................................20200.0510000010000
....TGTCGTG---T--CGTT---------------------TAATATTAGAA.......................................................................................................................................................................................................................................................................23200.0510100000000
.........................................................................................T------------GACTTAGTATCGGGTATA....................................................................................................................................................................................................19200.0510000010000
......................................................................................................GACTTAGTATCGGGTATAACTGTAGA............................................................................................................................................................................................26200.0510000001000
........................................................................................CT------------GACTTAGTATCGGGTATAA...................................................................................................................................................................................................21200.0510000000100
...TTGTCGTG---T--CGTT---------------------TAATATTAGACGCC....................................................................................................................................................................................................................................................................27200.0510000000100
......TCGTG---T--CGTT---------------------TAATATTAGACG......................................................................................................................................................................................................................................................................22200.0510100000000
droPer2
TCTTTGTCGTG---T--CGTT---------------------TAATATTAG-CGGCGTCT-----------GCCGGAGGAAAGCCATACT------------GACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTTT-TAA----T----ATAACTATTTCAGGAATTTGAAGTATCT--ATAATTATAGACCTACTTAAAAACACATTTCCA-----CTATTTCAGACATTCTGTGTGGTTTCGAAACGCTTTCGCAAGAATTACATCCATCGTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................G-CGGCGTCT-----------GCCGGAGGAAAG.........................................................................................................................................................................................................................................21200.204000004
....................T---------------------TAATATTAG-CGGCGTCT-----------G....................................................................................................................................................................................................................................................19200.102000002
........................................................................................................CTTAGTATCGGGTATAACTGT...............................................................................................................................................................................................21200.102020000
.......................................................CGTCT-----------GCCGGAGGAAAGCC.......................................................................................................................................................................................................................................19200.051000001
......................................................................................................................TAACTGTAGAGTTGCGGTGTCCGCAGC...........................................................................................................................................................................27200.051010000
...........................................................T-----------GCCGGAGGAAAGCCATACT------------G.....................................................................................................................................................................................................................21200.051000100
droWil2
ATTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGCAGACATTTTGTGTGGTGTCGAAACGATTTCGTAAAAATTATATACATCGCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGACATTTTGCGTAGTATCAAAGCGATTCCGAAAGAATTACATACACCGGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................GTATCAAAGCGATTCCGAAAGAA...............2311.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---------ACTTTTTCTTCACAGACATTTTGTGTGGTGTCGAAGCGTTTCCGAAAGAATTATATACATCGTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGACTTTCTGTGTGGTGTCAAAGCGATTCCGCAAGAATTACATACATCGCTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ACATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGCAGACGTTCTGTGTGGTGTCGAAGCGATTCCGAAAAAACTATATCCACCGCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGGCTTT----------------------------------------------------------------------------------------------------------------AACTGCAAGGTTATATCAACTTCGGCTCC----GCCCGAAGTTAGCTTTCCTTTCTT-GTT----AATATATCAGTGTTTCAGGGTGGTGAGGTCTG-------------------------------------------------------------------------------------------------TATSizeHit CountTotal NormTotal
No Reads
droKik1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAGACGTTCTGCGTGGTGTCCAAGCGGTTTCGCAAGAACTACATCCATCGCTTSizeHit CountTotal NormTotal
No Reads
droFic1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAGACCTTTTGCGTGGTTTCAAAACGGTTCCGCAAGAACTACATCCACCGCTTSizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGACCTTCTGTGTGGTGTCCAAGCGGTTCCGCAAGAACTATATCCACCGCTTSizeHit CountTotal NormTotal
No Reads
droRho1
TCCCTTT-----------------------------------------------------------------------------------------------ACCTGAGTAACGGGTAT---CTGATAGTCGGGGC----------ACCCGACTATAGCGTTCTTTCTTGTTTTTT-AAA----TCTAGTGACCCTTTTCAAAAGTTTGAA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACCTTCTGCGTGGTGTCCAAGCGGTTCCGGAAAAACTACATCCACCGCTTSizeHit CountTotal NormTotal
No Reads
droTak1
TCCCTTTAGCTGAGTTACGATTATTAGTCGGGACACCAACCC-GAC-----ACAGCG---TTCGCACTCCCTT----------------T------------AGCTGAGTGACGGGTAT---TAGATAGTCGGGAC------AACAACCCGACTATAGCGTTCTCTCTTGTTTTATTTAG----TAT-TATAGATATTTCATAATTACAAATTACTT--ATAAC--TAAACATATTTAA-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTCCTCT------------------------------------GACAATAGGTGGCGCATTGTGAATTTCCACT--AGCAAAATAATATTTTAAAATTTTGTAAAACAGTAACGGGTAT---CTTATAGTCGCGGC----------ACCCGACTATAGCGTTTCCTCTTGTTTTTT-TA---------TACAATTATTC-AAAAATC-GAA-CAT-----CAATTTTGGACTCAATCAAAAA--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGCGCTTTTTTC-----AAATTCCAGACCTTCTGTGTAGTATCTAAGCGGTTCCGGAAGAACTACATCCATCGCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................TAGTATCTAAGCGGTTCCGGAAGA................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CTTCTGTGTAGTATCTAAGCGG..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..........................................................................................................................................................................................................................................................................................CTAAGCGGTTCCGGAAGAACTT............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................................................................................................................................................................................TGTAGTATCTAAGCGGTTCCGGAAGAAC..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GTATCTAAGCGGTTCCGGA...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................AGCGGTTCCGGAAGAACTAC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ATCTAAGCGGTTCCGGAAGAA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................................................................................................................................................................................................................................GTAGTATCTAAGCGGTTCCGG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................TATCTAAGCGGTTCCGGAAGAACTACA..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCTGTGTAGTATCTAAGCGGTTCCGGA...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TCTAAGCGGTTCCGGAAGAACTACATC........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGCGCTTTTT-C-----AAATTTCAGACCTTCTGTGTAGTATCCAAGCGGTTCCGGAAGAACTACATCCATCGCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................TTCCGGAAGAACTACATCC.......1911.00110000000000000000
droSec2
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGCGCTTTTTTC-----AAATTTCAGACCTTCTGTGTAGTATCCAAGCGGTTCCGGAAGAACTACATCCATCGCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACT---------------------------------------------------------------------------------------------------AGCTGAGTAACGGGTAT---CAGATAGTCGGGGA----------ACTCGACTATAGCGTTCTCTCTTGTTTTTT-TATTATTTCT-TATTATTA--------TTTTGTAGTATTTTTTTATTATTAGATTTGCCAAAAAA--------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................AGTAACGGGTAT---CAGATAGTCGGGGA----------..........................................................................................................................................................................26200.20404000000000
...............................................................................................................ACGGGTAT---CAGATAGTCGGGGA----------ACTC......................................................................................................................................................................26200.05101000000000
..............................................................................................................................TAGTCGGGGA----------ACTCGACTATAGCG............................................................................................................................................................24200.05101000000000
droEre2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACCTTCTGTGTGGTATCCAAGCGGTTCCGGAAGAACTACATCCATCGCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:47 PM