dps_937

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCAGACATCTATAATGACAATTACTTTTCATATCACTCAACTGCAGCTCACGGAGCGCAGGAGCGCAGGAGCTGGGCGTTGAGCCGCCAGGCAACCATTGAGTCGACCCAGTTAGTGTTCCGTTTGAGCTACACGGTGTGGATTAGGGAGTGGATATGGCTTTCTCTAATTGTAGCGACGGCAACATGCCTGCCCTATAGATTCCAAGAACAGGGAGTCGAGCTCGTCAGAAACCCAGACGATGACCGCC ************************************************.....((......))((((((((((((((....(((....)))...........)).))))))).((((((((((...((((((........(((((((((.((......)))))))))))))))))))))).))))).))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343916 embryo	M040 female body	SRR902010 ovaries
.................................................................GCAGGAGCTGGGCGTTGAGCT.....................................................................................................................................................................	21	1	2	0.50	1	1	0	0
.................................................................GCAGGAGCTGGGCGTTGAG.......................................................................................................................................................................	19	0	2	0.50	1	0	1	0
................................................................................................................................................TAGGGAGTGAATATGGTGTTCT.....................................................................................	22	3	2	0.50	1	1	0	0
..............................................................AGCGCGGGAACTGGGCGTGGAGC......................................................................................................................................................................	23	3	3	0.33	1	0	1	0
...............................................................................................................................................TTAGGGACTGGATAT.............................................................................................	15	1	14	0.07	1	0	0	1

TAGTCTGTAGATATTACTGTTAATGAAAAGTATAGTGAGTTGACGTCGAGTGCCTCGCGTCCTCGCGTCCTCGACCCGCAACTCGGCGGTCCGTTGGTAACTCAGCTGGGTCAATCACAAGGCAAACTCGATGTGCCACACCTAATCCCTCACCTATACCGAAAGAGATTAACATCGCTGCCGTTGTACGGACGGGATATCTAAGGTTCTTGTCCCTCAGCTCGAGCAGTCTTTGGGTCTGCTACTGGCGG ************************************************.....((......))((((((((((((((....(((....)))...........)).))))))).((((((((((...((((((........(((((((((.((......)))))))))))))))))))))).))))).))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343916 embryo	M040 female body	GSM444067 head	V112 male body	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................CTTGTCCGTCAGATCGAG.........................	18	2	2	0.50	1	1	0	0	0	0
...........................................................................................................................................................................................................AGGTTGGTGTCCATCAGCTCG...........................	21	3	3	0.33	1	0	1	0	0	0
........................................................................................GTCCGTATGTAAGTCAGCTGG..............................................................................................................................................	21	3	4	0.25	1	0	0	0	1	0
...................................................................................................................................................................................................................GTCCCTCAACTCGAGCCGTA....................	20	3	4	0.25	1	0	0	1	0	0
........................................................................................................................................................................................................................................TTGGGTCCGCTACTGGATG	19	3	12	0.08	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
dp5	3:1552878-1553128 -	dps_937	ATCA------------------------GACATC--TATAATGA-CAATTACTTTTCATA--TCACTCAAC-TGCAGCT----------------------CACGGAGCG-CAGGAGCGCAGGAGCTGGGCGTTGAGCCGCCAGGCAACCATTGAGTCGACCCAGTTAGTG---T---------------------------------------------------------------------------------------------------------TC---CGTTTGAGCTACACGGTGTGGATTAGGGAGTGGATATGGCTTTCTCTA---ATTGTAGCGACGG-----CAACATGCCTG-----CCCTATAGATTCCAAGAACAGGGAGTCGAGCTCGTCAGAAACCCAGACGATGACCGCC--------------
droPer2	scaffold_2:1725680-1725930 -		ATCA------------------------GACATC--TATAATGA-CAATTGCTTTTCATA--TCACTCAAC-TGCAGCT----------------------CACGGAGCG-CAGGAGCGCAGGAGCTGGGCGTTGAGCCGCCAGGCAACCATTGAGTCGACCCAGTTAGTG---T---------------------------------------------------------------------------------------------------------TC---CGTTTGAGCTACACGGTGTGGATTAGGGAGTGGATATGGCTTTCTCTA---ATTGTAGCGACGG-----CAACATGCCTG-----CCCTGTAGATTCCAAGAACAGGGAGTCGAGCTCGTCAGAAACCCAGACGATGACCGCC--------------
droWil2	scf2_1100000004513:6248247-6248620 +		AGCA------------------------GTTATC--AGTGATGA-TGTTTCAATTTCATTTCA------AT-TACAGCTATGAGAATCCAGCTGATATACCAAAAGATCAACAAGAGCGCAAGAGCTGGGCATTGAGTCGTAAAGCCACAATTGAATTAACCCACAA-TTGGGGCACTGAATCCGATCCCGATCAGAGCTATCACACTGGCAACTCTGAGCCACGTGGTTTTGGACATATTGGCCTGATGGTTCCAGATGTCTATGCTGCCTGTAAACGGTAATTAATTAA------GTGCAA--------------------GATTCCTCT--CTTTTGTT-----GGCAAACTTACATTCTTGTAATCTTCTTCAGCTTTGAGGAGCATAATGTGGAATTCGTTAAGAAACCCAATGATGGTCGCATGAAGGGTTTGGCC
droVir3	scaffold_12875:10797885-10797946 -		A----------------------------------------------------------------------------------------------------------------GGAGCGACGAAGCTGGGCAATGAGCCGCAAGGCCACCATTGAATTGACGCAGTGAGTG---C---------------------------------------------------------------------------------------------------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:16148700-16148817 +		A----------------------------------------------------------------------------------------------------------------GGAACGTCGCAGCTGGGCAATGAGCCGCAAGGCCACCATTGAGTTGACTCAGTAAGTT---T----------------------------------------------------------G----------------------------------------------AC---CTTTTGACCTGTCTAATATGGTTTATTGATTT--TGTGAGTTTCTCTATCTATTGTA----------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:3906344-3906410 -		A----------------------------------------------------------------------------------------------------------------AGAGCGCAGGAGCTGGGCAATGAGTCGCAAGGCCACCATTGAATTAACGCAGTGAGTG---C---------------------------------------------------------------------------------------------------------TT---TATTT--------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:3490567-3490623 -		A----------------------------------------------------------------------------------------------------------------AGAGCGACGCAGCTGGGCCATGAGCCGCAAGGCAACCATTGAATTGACCCAGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396427:1957140-1957196 -		A----------------------------------------------------------------------------------------------------------------AGAGCGACGCAGCTGGGCCATGAGCCGCAAGGCCACCATTGAACTGACCCAGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302670:10525-10674 -		ATCTAAGTACGTGCGTATGGTT--------C-----GGTGATAA-CAATTGCGTTT-GCATCT------CCCTGCAGATACGAGAACCCCGCCGATGTGCCCAAGGATCCTAAGGAGCGACGCAGCTGGGCGATGAGCCGCAAGGCCACGGTTGAGCTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453948:30042-30099 -		A----------------------------------------------------------------------------------------------------------------AGAGCGACGCAGCTGGGCAATGAGCCGCAAAGCCACCATTGAGTTAACCCAGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491347:98735-98888 -		ATCTAAACGCGTGAG----ATTC-----GCCGGTGATATTAGCT-TAATTGGCTTC-TTATCC------GC-CGCAGCTACGAGAACCCTGCCGATGTGCCCAAGGATCCCAAGGAGCGCCGCAGCTGGGCGTTGAGCCGCAAGGCTACCATCGAGCTGACCCAGTAAGTG---T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000770698:17241-17393 -		ATCTAAATACGTGAG----ATTC-----GCCGGTGATATGATGT-GAATTGCCTTC-TTATCT------TC-CGCAGCTACGAGAACGCCGCCGATGTGCCAAAGGATCCCAAGGAGCGCCGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGCTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302292:2864259-2864396 +		GCA--------------------------ATAGCTATATGATGA-CAATTGCTTTC-TTATCC------GC-CGCAGCTACGAGAACCAAGCCGATGTGCCCAAGGATCCTAAGGAGCGACGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGCTGACTCAGTAAGTG---C---------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000412807:48584-48722 -		ATTC------------------------GACGGCGATATAATGACCAATTGCTTTC-TTATCT------GC-CGCAGCTACGAGAACCAGGCCGATGTGCCCAAGGATCCCAAGGAGCGCCGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGCTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409672:5296082-5296235 -		ATCTCGATACGTGCG----ATTC-----GACG-TAATATAATGA-CAATTGCTTTC-TAATCT------GT-CGCAGCTATGAGAACGCCGCCGATGTACCCAAGGATCCCAAAGAGCGCAAGAGCTGGGCACTGACCCGCAAGGCCACCATTGAGCTGACCCAGTAAGTA---T---------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:3282914-3283072 -		ATCTTAAT------------------TTGATATTGATACAATGA-CAATCGCTTTT-GTATCT------GG-CCCAGGTACGAGAACGCCACCGATGTGCCTAAGGATCCCAAGCAGCGACGCAGCTGGGCGCTGAGCCGCAAGGCCACCATTGAGTTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------TTTTCCGTTTGTGC----------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:4108685-4108864 -		ATCTTGAT--------------------GATATTGATACAATGA-CAATCGCTTTT-TTATCT------GG-CCCAGCTACGAGAAAGCCACTGATGTGCCTAAGGATCCCAAGGAGCGACGAAGCTGGGCGCTGAGCCGCAAGGCCACCATTGAGTTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------TTTTCAATTTG-----CATGCAATTGGCAAGGAAAAGGTTAT------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:933014-933167 -		ATCTTGAT--------------------GATATTGATACAATGA-CAATCGCTTTT-TTATCT------GG-CCCAGCTACGAGAAAGCCACCGATGTGCCTAAGGATCCCAAGGAGCGACGAAGCTGGGCGCTGAGCCGCAAGGCCACCATTGAATTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------TTTTCCATTTG-------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:15967052-15967209 -		ATCTTGATGCCCACC----AGTCAAACTGATATTGATACAATGA-CAATCGTTTTT-TTATCT------GA-TCCAGCTACGAGAACGCCGCCGACGTGCCAAAGGATCCCAAGGAACGACGCAGCTGGGCAATGAGCCGCAAGGCCACCATTGAGTTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:19312485-19312625 +		GCCAA---------------------CTGATATTGATACAATGA-CAATTGCTTTT-TTATCT------GC-TCCAGCTACGAGAACGCCGCCGACGTGCCAAAGGATCCCAAGGAACGGCGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGTTAACTCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

ATCA------------------------GACATC--TATAATGA-CAATTACTTTTCATA--TCACTCAAC-TGCAGCT----------------------CACGGAGCG-CAGGAGCGCAGGAGCTGGGCGTTGAGCCGCCAGGCAACCATTGAGTCGACCCAGTTAGTG---T---------------------------------------------------------------------------------------------------------TC---CGTTTGAGCTACACGGTGTGGATTAGGGAGTGGATATGGCTTTCTCTA---ATTGTAGCGACGG-----CAACATGCCTG-----CCCTATAGATTCCAAGAACAGGGAGTCGAGCTCGTCAGAAACCCAGACGATGACCGCC--------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................GCAGGAGCTGGGCGTTGAGCT...............................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................GCAGGAGCTGGGCGTTGAG.................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATCA------------------------GACATC--TATAATGA-CAATTGCTTTTCATA--TCACTCAAC-TGCAGCT----------------------CACGGAGCG-CAGGAGCGCAGGAGCTGGGCGTTGAGCCGCCAGGCAACCATTGAGTCGACCCAGTTAGTG---T---------------------------------------------------------------------------------------------------------TC---CGTTTGAGCTACACGGTGTGGATTAGGGAGTGGATATGGCTTTCTCTA---ATTGTAGCGACGG-----CAACATGCCTG-----CCCTGTAGATTCCAAGAACAGGGAGTCGAGCTCGTCAGAAACCCAGACGATGACCGCC--------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

AGCA------------------------GTTATC--AGTGATGA-TGTTTCAATTTCATTTCA------AT-TACAGCTATGAGAATCCAGCTGATATACCAAAAGATCAACAAGAGCGCAAGAGCTGGGCATTGAGTCGTAAAGCCACAATTGAATTAACCCACAA-TTGGGGCACTGAATCCGATCCCGATCAGAGCTATCACACTGGCAACTCTGAGCCACGTGGTTTTGGACATATTGGCCTGATGGTTCCAGATGTCTATGCTGCCTGTAAACGGTAATTAATTAA------GTGCAA--------------------GATTCCTCT--CTTTTGTT-----GGCAAACTTACATTCTTGTAATCTTCTTCAGCTTTGAGGAGCATAATGTGGAATTCGTTAAGAAACCCAATGATGGTCGCATGAAGGGTTTGGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................TGGACATATTGGCCTGATGGTTCCAGA........................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0
.................................................................................................................................................................................................................................TGGTTTTGGACATATTGGCCTGATGG...............................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0
............................................................................................................CAACAAGAGCGCAAGAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAATGATGGTCGCATGAAGG........	20	1	2.00	2	0	0	0	2	0
.....................................................................................................................................TGAGTCGTAAAGCCACAATTGAAT.............................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0
...................................................................................................................................ATTGAGTCGTAAAGCCACAAT..................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0
.........................................................................................................................................................................................................................GAGCCACGTGGTTTTGGAC..............................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
.............................................................................................................................................................TAACCCACAA-TTGGGGCACTGAATCCGA................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0
...............................................................................................................CAAGAGCGCAAGAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................ACTGAATCCGATCCCGATCAGAGCT..................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................GCAACTCTGAGCCACGTG.......................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAATGATGGTCGCATGAAGG........	24	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................AACCCACAA-TTGGGGCACTGAATCCGA................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................TGGTTTTGGACATATTGGCCTGATGGT..............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................TCAGAGCTATCACACTGGCAACTCTG................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................ATTGGCCTGATGGTTCCAGATGT.....................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TTTGAGGAGCATAATGTGGAATT........................................	23	1	1.00	1	0	0	1	0	0
.......................................................................................................................................AGTCGTAAAGCCACAATTGA...............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................TCAGAGCTATCACACTGGCAACTCTGA...............................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................CAGAGCTATCACACTGGCAACTCTGA...............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................GCAACTCTGAGCCACGTGGTT....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
......................................................................................................AAAGATCAACAAGAGCGCAAGA..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................TATCACACTGGCAACTCTGAGC.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTGGAATTCGTTAAGA................................	21	1	1.00	1	0	0	0	1	0
...............................................................................ATGAGAATCCAGCTGATATACC.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................AGCCACGTGGTTTTGGACAT............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................CACAA-TTGGGGCACTGAATCCGATCC.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................AATCCGATCCCGATCAGAGC...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAATTCGTTAAGAAAC.............................	21	1	1.00	1	0	0	0	0	1
.............................................................................................................AACAAGAGCGCAAGAGCT...........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................................................................................................AGAGCGCAAGAGCTGGGCATTGAGT................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................................................................................................................CGCAAGAGCTGGGCATTGAGT................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................ATTGGCCTGATGGTTCCAGATGTC....................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................TCAGAGCTATCACACTGGCAACTCT.................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................TTGGACATATTGGCCTGATGGTTCCAGA........................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................GTTTTGGACATATTGGCCTG...................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................GAGCTATCACACTGGCAACTCTGAGC.............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................GATATACCAAAAGATCAACAAGAGC....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................TGATGGTTCCAGATGTCTATGCTGCC...........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................GCACTGAATCCGATCCCGATCAGAGCT..................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGGTCGCATGAAGG........	19	1	1.00	1	0	0	0	1	0
.............................................................................................................AACAAGAGCGCAAGAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................TCACACTGGCAACTCTGA...............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................CTCTGAGCCACGTGGTTTTGGACA.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAATGATGGTCGCATGAAGGG.......	25	1	1.00	1	0	0	0	1	0
....................................................................................................................GCGCAAGAGCTGGGCATTGA..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGGTCGCATGAAG.........	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................TGGGCATTGAGTCGTAAAGCCACAAT..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................TGGGGCACTGAATCCGATCCCGATCA.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................TGGTTTTGGACATATTGGCCTGA..................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................AGCCACGTGGTTTTGGAC..............................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATGATGGTCGCATGAAG.........	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................TTTGGACATATTGGCCTGATGGT..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
................................................................................................ATACCAAAAGATCAACAAGAGC....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
......................................................................................................................GCAAGAGCTGGGCATTGAGTC...............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................TGAATCCGATCCCGATCAGAGCTAT................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................TGATGGTTCCAGATGTCTATGCTGC............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................................................................................................CAAAAGATCAACAAGAGCGC..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGAATTCGTTAAGA................................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................TGAGTCGTAAAGCCACAATTGAATTAACC........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................TATCACACTGGCAACTCTGAGCCACG.........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................TTTTGGACATATTGGCCTGATGGTTC............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................GGTTTTGGACATATTGGCCTGA..................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....................................................................................................................................TGAGTCGTAAAGCCACAATTGAATTAA..........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................CTCTGAGCCACGTGGTTTTGGA...............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCATGAAGGGTTTGGCC	21	1	1.00	1	0	0	1	0	0
........................................................................................................................................................TGAATTAACCCACAA-TTGGGGCACT........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
......................................................................................................................GCAAGAGCTGGGCATTGAGT................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................CCCGATCAGAGCTATCACACTG.........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................CACGTGGTTTTGGACATATTGGC......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.............................................................................................GATATACCAAAAGATCAACAAGAGCG...................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................TGAATCCGATCCCGATCAGAGCTA.................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................TATTGGCCTGATGGTTCCAGATGTCT...................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................ATCACACTGGCAACTCTGAGC.............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................GGCAACTCTGAGCCACGTGGTTTTGGAC..............................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................TGGTTCCAGATGTCTATGCTGCCTG.........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0

droVir3

A----------------------------------------------------------------------------------------------------------------GGAGCGACGAAGCTGGGCAATGAGCCGCAAGGCCACCATTGAATTGACGCAGTGAGTG---C---------------------------------------------------------------------------------------------------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................GCGACGAAGCTGGGCAAT....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GACGAAGCTGGGCAATGAG.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AATGAGCCGCAAGGCCACCAT..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GACGAAGCTGGGCAATGAGC................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................GCGACGAAGCTGGGCAATGAG.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

A----------------------------------------------------------------------------------------------------------------GGAACGTCGCAGCTGGGCAATGAGCCGCAAGGCCACCATTGAGTTGACTCAGTAAGTT---T----------------------------------------------------------G----------------------------------------------AC---CTTTTGACCTGTCTAATATGGTTTATTGATTT--TGTGAGTTTCTCTATCTATTGTA----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................CGCAGCTGGGCAATGAGCCGC.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................AACGTCGCAGCTGGGCAATGAGC................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................CGCAAGGCCACCATTGAGTT............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................................................................................................GTCGCAGCTGGGCAATGAGCCG..............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droGri2

A----------------------------------------------------------------------------------------------------------------AGAGCGCAGGAGCTGGGCAATGAGTCGCAAGGCCACCATTGAATTAACGCAGTGAGTG---C---------------------------------------------------------------------------------------------------------TT---TATTT--------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................GCAGGAGCTGGGCAATGAGTCG..............................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0

droAna3

A----------------------------------------------------------------------------------------------------------------AGAGCGACGCAGCTGGGCCATGAGCCGCAAGGCAACCATTGAATTGACCCAGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................GAGCGACGCAGCTGGGCC......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................GCGACGCAGCTGGGCCATGAGCCGCAA...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................CAGCTGGGCCATGAGCCGCAAGGC........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droBip1

A----------------------------------------------------------------------------------------------------------------AGAGCGACGCAGCTGGGCCATGAGCCGCAAGGCCACCATTGAACTGACCCAGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATCTAAGTACGTGCGTATGGTT--------C-----GGTGATAA-CAATTGCGTTT-GCATCT------CCCTGCAGATACGAGAACCCCGCCGATGTGCCCAAGGATCCTAAGGAGCGACGCAGCTGGGCGATGAGCCGCAAGGCCACGGTTGAGCTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A----------------------------------------------------------------------------------------------------------------AGAGCGACGCAGCTGGGCAATGAGCCGCAAAGCCACCATTGAGTTAACCCAGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATCTAAACGCGTGAG----ATTC-----GCCGGTGATATTAGCT-TAATTGGCTTC-TTATCC------GC-CGCAGCTACGAGAACCCTGCCGATGTGCCCAAGGATCCCAAGGAGCGCCGCAGCTGGGCGTTGAGCCGCAAGGCTACCATCGAGCTGACCCAGTAAGTG---T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATCTAAATACGTGAG----ATTC-----GCCGGTGATATGATGT-GAATTGCCTTC-TTATCT------TC-CGCAGCTACGAGAACGCCGCCGATGTGCCAAAGGATCCCAAGGAGCGCCGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGCTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCA--------------------------ATAGCTATATGATGA-CAATTGCTTTC-TTATCC------GC-CGCAGCTACGAGAACCAAGCCGATGTGCCCAAGGATCCTAAGGAGCGACGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGCTGACTCAGTAAGTG---C---------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTC------------------------GACGGCGATATAATGACCAATTGCTTTC-TTATCT------GC-CGCAGCTACGAGAACCAGGCCGATGTGCCCAAGGATCCCAAGGAGCGCCGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGCTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATCTCGATACGTGCG----ATTC-----GACG-TAATATAATGA-CAATTGCTTTC-TAATCT------GT-CGCAGCTATGAGAACGCCGCCGATGTACCCAAGGATCCCAAAGAGCGCAAGAGCTGGGCACTGACCCGCAAGGCCACCATTGAGCTGACCCAGTAAGTA---T---------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATCTTAAT------------------TTGATATTGATACAATGA-CAATCGCTTTT-GTATCT------GG-CCCAGGTACGAGAACGCCACCGATGTGCCTAAGGATCCCAAGCAGCGACGCAGCTGGGCGCTGAGCCGCAAGGCCACCATTGAGTTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------TTTTCCGTTTGTGC----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................TAAGGATCCCAAGCAGCGACGC...............................................................................................................................................................................................................................................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TGCCTAAGGATCCCAAGCAGCG...................................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TAAGGATCCCAAGCAGCGACGCAGC............................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................CTAAGGATCCCAAGCAGCGACGC...............................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................GCGCTGAGCCGCAAGGCCACCATTG................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CGAGAACGCCACCGATGTGCCTAAGGA...............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATCCCAAGCAGCGACGCAG.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTGAGTTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------T.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TCCCAAGCAGCGACGCAGCT...........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CTAAGGATCCCAAGCAGCGACGCAGC............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GCTGGGCGCTGAGCCGCA............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TGTGCCTAAGGATCCCAAGCAGCGAC.................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CCAAGCAGCGACGCAGCTGGGCGCT....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATCTTGAT--------------------GATATTGATACAATGA-CAATCGCTTTT-TTATCT------GG-CCCAGCTACGAGAAAGCCACTGATGTGCCTAAGGATCCCAAGGAGCGACGAAGCTGGGCGCTGAGCCGCAAGGCCACCATTGAGTTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------TTTTCAATTTG-----CATGCAATTGGCAAGGAAAAGGTTAT------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................TAAGGATCCCAAGGAGCGACGAAGC............................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
....................................................................................................CTAAGGATCCCAAGGAGC....................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GACGAAGCTGGGCGCT....................................................................................................................................................................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................TAAGGATCCCAAGGAGCGACG................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................TAAGGATCCCAAGGAGCGACGA...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATCCCAAGGAGCGACGAAGCTGGG........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................ATGTGCCTAAGGATCCCAAGGAGCGA..................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................AGGAGCGACGAAGCTGGGCGC.....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................CAAGGAGCGACGAAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAGGAGCGACGAAGCTGGGCGCTGAGC................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CGCTGAGCCGCAAGGCCACCATTGAGTTG...........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TAAGGATCCCAAGGAGCGACGAAGCTG..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAGGAGCGACGAAGCTG..........................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................AGGATCCCAAGGAGCGACGAAGCTGG.........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................ACTGATGTGCCTAAGGATCC............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATCTTGAT--------------------GATATTGATACAATGA-CAATCGCTTTT-TTATCT------GG-CCCAGCTACGAGAAAGCCACCGATGTGCCTAAGGATCCCAAGGAGCGACGAAGCTGGGCGCTGAGCCGCAAGGCCACCATTGAATTGACCCAGTAAGTG---G---------------------------------------------------------------------------------------------------------TTTTCCATTTG-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................GATGTGCCTAAGGATCCCAAGGAGCGA..................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	1	1	1	0
......................................................................................................................GACGAAGCTGGGCGCTGAGCCGCAAGGC........................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0
.........................................................................................................................GAAGCTGGGCGCTGAGCCGCAAGGCCACC....................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0
....................................................................................................................GCGACGAAGCTGGGCGCTGAGCC...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
................................................................................................................AGGAGCGACGAAGCTGGGCGCTGAGC................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..........................................................................................................ATCCCAAGGAGCGACGAAGCTG..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................................................................................................CTAAGGATCCCAAGGAGC....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
......................................................................................................................GACGAAGCTGGGCGCTGAGCCGCAAGG.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..........................................................................................................ATCCCAAGGAGCGACGAAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................................................GACGAAGCTGGGCGCTGAGC................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.......................................................................................................................ACGAAGCTGGGCGCTGAGC................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
............................................................................................................CCCAAGGAGCGACGAAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
................................................................................................GTGCCTAAGGATCCCAAGGAGCG...................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..........................................................................................................ATCCCAAGGAGCGACGAAGC............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

ATCTTGATGCCCACC----AGTCAAACTGATATTGATACAATGA-CAATCGTTTTT-TTATCT------GA-TCCAGCTACGAGAACGCCGCCGACGTGCCAAAGGATCCCAAGGAACGACGCAGCTGGGCAATGAGCCGCAAGGCCACCATTGAGTTGACCCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................AACGACGCAGCTGGGCAATGAGC................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......................................................................................................................GACGCAGCTGGGCAATGAGCCGCAAGG.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................CGACGTGCCAAAGGATCCCA..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ATTGAGTTGACCCAGTAAGC................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................AGGAACGACGCAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................CAGCTGGGCAATGAGCCGCAAGGCC.......................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................TACGAGAACGCCGCCGACGTGCCAAAG.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGACGCAGCTGGGCAATGAGC................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................CGCCGACGTGCCAAAGGATCCCAAG........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................GAACGCCGCCGACGTGCCAAAG.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................GAACGACGCAGCTGGGCAATGAGC................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................AGGATCCCAAGGAACGACGC...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................GGAACGACGCAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................TGCCAAAGGATCCCAAGGAACGACG................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................GCCGCCGACGTGCCAAAGGATCCCAAG........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................TGCCAAAGGATCCCAAGGAA.....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................CAAGGAACGACGCAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCCAA---------------------CTGATATTGATACAATGA-CAATTGCTTTT-TTATCT------GC-TCCAGCTACGAGAACGCCGCCGACGTGCCAAAGGATCCCAAGGAACGGCGCAGCTGGGCGATGAGCCGCAAGGCCACCATTGAGTTAACTCAGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................TGAGCCGCAAGGCCACCATTGAGTT............................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	5
............................................................................................................CCCAAGGAACGGCGCAGCTG..........................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
...........................................................................................................TCCCAAGGAACGGCGCAGCT...........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................CAAGGAACGGCGCAGCTGGGCG......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................GCCAAAGGATCCCAAGGAACGGCGCAGC............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................GAACGGCGCAGCTGGGCGATGAGC................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................GATCCCAAGGAACGGCGCAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................ACGCCGCCGACGTGCCAAAGGAT..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................GATCCCAAGGAACGGCGCAGCTGGG........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................GATCCCAAGGAACGGCGCAGCT...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................CAAAGGATCCCAAGGAACG...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................ACGCCGCCGACGTGCCAAAGG................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................CCCAAGGAACGGCGCAGCT...........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................ATCCCAAGGAACGGCGCAGCTGGGC.......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................ATCCCAAGGAACGGCGCAGCTG..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................CGCAAGGCCACCATTGAGTTAACT........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................CAAAGGATCCCAAGGAACGGC.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................GCCAAAGGATCCCAAGGAACGGC.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................GAACGCCGCCGACGTGCCAAAGGATCC............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
............................................................................................CGACGTGCCAAAGGATCCCAAGGAA.....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
................................................................................................GTGCCAAAGGATCCCAAGGA......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................................................AGAACGCCGCCGACGTGCCA....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................CGGCGCAGCTGGGCGATGAGCCGCAA...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

dps_937

3:1552928-1553078 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-45.4	-45.2	-45.2