ID:

dps_929

 Coordinate:

3:1038576-1038726 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.9 -8.8 -8.7

Flybase annnotation

exon [dpse_GLEANR_14923:8]; CDS [Dpse\GA24550-cds]; intron [Dpse\GA24550-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA-
mature
star
  1. dps_929  3:1038661-1038685 -
  2. Unknown_group_178:8216-8240 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################--
CTGCCGTAGTTGCAGAGAGGAGGAGGATACAGAACATCTGTTCTGCTCCTGTCCAGCTTTCAGCAGAAGAAGGCTACAACACTTAGGCTCTGCCTTTCTAACCGACATCTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTAGCTGGAACAACTGCTGACATGAAGTCTCACTTTGCAGGAAAGGAATGATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAAT
*******************************************************************************************..((((((....(((((((...))))))).............))))))...........***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 GSM343916
embryo
..........TGCAGAGAGGAGGAGGATACAGAACA....................................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0
.........................................................TTTCAGCAGAAGAAGGCTACAACG.......................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................CACTATGTCCCAGAAAGATCGCTAACTT..................................................................................................... 28 0 1 1.00 1 0 0 1 0 0
...........................................................................................GCCTTTCTAACCGACATCTCGGAGA....................................................................................................................................... 25 0 2 1.00 2 2 0 0 0 0
.........................................................TTTCAGCAGAAGAAGGCTACAACGCT........................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................TGACATGAAGTCTCACTTTGCAG.................................................. 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................CCCAGAAAGATCGCTAACTTTATA................................................................................................. 24 0 1 1.00 1 0 0 0 1 0
...........................................................................................GCCTTTCTAACCGACATCTCG........................................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
...........................................................................................GCCTTTCTAACCGACATCTCGGA......................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
...........................................................................................GCCTTTCTAACCGACATCTCGG.......................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
...........................................................................................GCCTTTCTAACCGACATCTCGGAGATGT.................................................................................................................................... 28 0 2 0.50 1 0 0 1 0 0
................................................................................................................................GTCTCAGAAAGATCGCTA......................................................................................................... 18 1 2 0.50 1 0 0 0 0 1
...........................................................................................GCCTTTCTAACCGACATCTCGGAG........................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
.................................GCATCTGTTCTGCTCCTGT....................................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
............................................................................................CCTTTCTAACCGACATCTCGGA......................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
...........................................................................................GCCTTTCTAACCGACATGTCGGAGA....................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TCTCGGAGATGTCTACACTATGTCT....................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0
..................................................................AAGAAGGCTACAACACTTAGGCTC................................................................................................................................................................. 24 0 6 0.33 2 2 0 0 0 0
...........................................................TCAGCAGAAGAAGGCTACAACACTTAGG.................................................................................................................................................................... 28 0 6 0.17 1 1 0 0 0 0
............................................................................................................................................TCGCTAACTTTATAAGAACATCTGGC..................................................................................... 26 2 6 0.17 1 1 0 0 0 0
....................................................................GAAGGCTACAACACTTAGGCT.................................................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0
.......................................................................GGCTACAACACTTAGGCTC................................................................................................................................................................. 19 0 7 0.14 1 1 0 0 0 0
..................................................................AAGAAGGCTACAACACTTAGGCT.................................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0 0
..............................................................................................................CGGAGATGTCTACACTATGTCC....................................................................................................................... 22 0 7 0.14 1 1 0 0 0 0
............................................................CAGCAGAAGAAGGCTACAACGCTT....................................................................................................................................................................... 24 1 11 0.09 1 1 0 0 0 0
............................................................CAGCAGAAGAAGGCCACAACGCTT....................................................................................................................................................................... 24 2 11 0.09 1 1 0 0 0 0
............................................................CAGCAGAAGAAGGCTACAACACT........................................................................................................................................................................ 23 0 12 0.08 1 1 0 0 0 0
..................................................................................................................................CCCAGAAAGATCGTTAACTTTA................................................................................................... 22 1 15 0.07 1 1 0 0 0 0
.................................................................................................................................................................................................................TGATCCCAAGCGGTATCCCAACGGGC................ 26 1 18 0.06 1 1 0 0 0 0
....................................................................................................................................................................................................................TCCCAAGCGGTATCCCAACGGGC................ 23 1 18 0.06 1 1 0 0 0 0
......................................................................................................................................................................................................................CCAAGCGGTATCCCAACGGGC................ 21 1 19 0.05 1 1 0 0 0 0
................................AACATCTGTTCTGCTCCTG........................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0
............................................................CAGCAGAAGAAGGCTACAACAC......................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...........................................................TCAGCAGAAGAGGGCTACAA............................................................................................................................................................................ 20 1 20 0.05 1 1 0 0 0 0
.............................................................AGCAGAAGAAGGCTACAACAC......................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...........................................................TCAGCAGAAGAAGGCTACAACAC......................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................GGAATGATCCCAAGCGGTATC......................... 21 0 20 0.05 1 1 0 0 0 0
...........................................................TCAGCAGAAGAAGGCTACAA............................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
...........................................................TCAGCAGAAGAAGGCTACAAC........................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

GACGGCATCAACGTCTCTCCTCCTCCTATGTCTTGTAGACAAGACGAGGACAGGTCGAAAGTCGTCTTCTTCCGATGTTGTGAATCCGAGACGGAAAGATTGGCTGTAGAGCCTCTACAGATGTGATACAGGGTCTTTCTAGCGATTGAAATATTCTCGTAGATCGACCTTGTTGACGACTGTACTTCAGAGTGAAACGTCCTTTCCTTACTAGGGTTCGCCATAGGGTTACCCGGCTGTGGTCTGATTTA
*****************************************************************************************************..((((((....(((((((...))))))).............))))))...........******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 SRR902011
testis
 V112
male body		 GSM444067
head
 M022
male body		 GSM343916
embryo
..................................................................................................................CTACAGATGTGATACAGGGTCTTTCT............................................................................................................... 26 0 2 9.00 18 9 2 7 0 0 0 0
........................................AAGACGAGGACAGGTCGAAAGTCGT.......................................................................................................................................................................................... 25 0 2 5.50 11 8 0 3 0 0 0 0
....................................................................................................................ACAGATGTGATACAGGGTCTTTCT............................................................................................................... 24 0 2 4.00 8 3 1 2 2 0 0 0
..............................................................................................................................................................................GACGACTGTACTTCAGAGTGAAACGT................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0
....................................AGACAAGACGAGGACAGGTCGAAAGT............................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
.............................................GAGGACAGGTCGAAAGTCGTCT........................................................................................................................................................................................ 22 0 3 1.33 4 2 2 0 0 0 0 0
.....................................GACAAGACGAGGACAGGTCGAAAGT............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................GAATCCGAGACGGAAAGATTGGCTGT................................................................................................................................................ 26 0 2 1.00 2 1 1 0 0 0 0 0
......................................................................................................................AGATGTGATACAGGGTCTTTCT............................................................................................................... 22 0 2 1.00 2 2 0 0 0 0 0 0
...............................................................................................................................ACAGGGTCTTTCTAGCGATTGAAAT................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................AGACGAGGACAGGTCGAAAGTCGTCT........................................................................................................................................................................................ 26 0 2 1.00 2 1 0 1 0 0 0 0
...........................................................................................................................TGATACAGAGTCTTTCTAGCGAT......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................GTCGAAAGTCGTCTTCTTCCGATGT............................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
..................................................CAGGTCGAAAGTCGTCTTCTTCCGATGT............................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0
......................................ACAAGACGAGGACAGGTCGAAAGTCGT.......................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.........AACGTCTCTCCTCCTCCTATGTCTTGT....................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
..........................................GACGAGGACAGGTCGAAAGTCGTCT........................................................................................................................................................................................ 25 0 2 1.00 2 2 0 0 0 0 0 0
.....................................................................................CCGAGACGGAAAGATTGGCTGT................................................................................................................................................ 22 0 2 1.00 2 1 1 0 0 0 0 0
..................................................................................................................CTACAGATGTGATACAGGGTCTCT................................................................................................................. 24 1 3 0.67 2 0 0 2 0 0 0 0
............................................CGAGGACAGGTCGAAAGTCGTCTT....................................................................................................................................................................................... 24 0 3 0.67 2 0 2 0 0 0 0 0
............................................CGAGGACAGGTCGAAAGTCGTCT........................................................................................................................................................................................ 23 0 3 0.67 2 0 2 0 0 0 0 0
............................................................................GTTGTGAATCCGAGACGGAAAGATT...................................................................................................................................................... 25 0 5 0.60 3 2 1 0 0 0 0 0
.........................................................................................GACGGAAAGATTGGCTGTAGAGCCTCTA...................................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................ACGGAAAGATTGGCTGTAGAGCCTCT....................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
...........................................ACGAGGACAGGTCGAAAGTCGTCTT....................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 1 0 0
......................................................................................CGAGACGGAAAGATTGGCTGT................................................................................................................................................ 21 0 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................CCGAGACGGAAAGATTGGCTGTAG.............................................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................AGCCTCTACAGATGTGATACAGGGTCT................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0
..............................................AGGACAGGTCGAAAGTCGTCTTCT..................................................................................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0
..............................................................................TGTGAATCCGAGACGGAAAGATTGGCT.................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................CTACAGATGTGATACAGGGTCTTTCTA.............................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0
............................................................................GTTGCGAATCCGAGACGAAAAGATT...................................................................................................................................................... 25 2 5 0.40 2 0 2 0 0 0 0 0
.................................................................................................................TCTACAGATGTGATACAGGGTCTT.................................................................................................................. 24 0 3 0.33 1 0 1 0 0 0 0 0
.............................................GAGGACAGGTCGAAAGTCGTCTT....................................................................................................................................................................................... 23 0 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................AGAGCCTCTACAGATGTGATACAGAG...................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0 0
..............................................AGGACAGGTCGAAAGTCGTCTT....................................................................................................................................................................................... 22 0 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................CCTCTACAGATGTGATACAGGGTCTT.................................................................................................................. 26 0 3 0.33 1 0 0 0 0 0 1 0
..............................................AGGACAGGTCGAAAGTCGTCT........................................................................................................................................................................................ 21 0 3 0.33 1 0 1 0 0 0 0 0
.............................................GAGGACAGGTCGAAAGTCGT.......................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
...........................................................AGTCGTCTTCTTCCGATGTTG........................................................................................................................................................................... 21 0 20 0.30 6 0 6 0 0 0 0 0
.............................................................TCGTCTTCTTCCGATGTTGT.......................................................................................................................................................................... 20 0 20 0.25 5 0 5 0 0 0 0 0
..............................................................CGTCTTCTTCCGATGTTGTG......................................................................................................................................................................... 20 0 20 0.25 5 0 5 0 0 0 0 0
...............................................................................................................CCTCTACAGATGTGATACAGGGTC.................................................................................................................... 24 0 4 0.25 1 0 1 0 0 0 0 0
...............................................................................GTGAATCCGAGACGGAAAGATT...................................................................................................................................................... 22 0 5 0.20 1 0 1 0 0 0 0 0
.............................................................................TTGCGAATCCGAGACGAAAAGATT...................................................................................................................................................... 24 2 5 0.20 1 0 1 0 0 0 0 0
..............................................................................TGGGAATCCGAGACGGAAAGATT...................................................................................................................................................... 23 1 5 0.20 1 0 1 0 0 0 0 0
..............................................................................TGCGAATCCGAGACGAAAAGATT...................................................................................................................................................... 23 2 5 0.20 1 0 1 0 0 0 0 0
............................................................................GTGATGAATCCGAGACGGAAAGATT...................................................................................................................................................... 25 2 5 0.20 1 0 1 0 0 0 0 0
.........................................................................GATGTTGTGAATCCGAGACGGAAAGATT...................................................................................................................................................... 28 0 5 0.20 1 0 0 1 0 0 0 0
.............................................................TCGTCTTCTTCCGATGTTGTG......................................................................................................................................................................... 21 0 20 0.20 4 0 4 0 0 0 0 0
............................................................GTCGTCTTCTTCCGATGTTGT.......................................................................................................................................................................... 21 0 20 0.20 4 0 4 0 0 0 0 0
............................................................................GTTGCGAATCCGAGACGAAAAGAT....................................................................................................................................................... 24 2 5 0.20 1 0 1 0 0 0 0 0
.............................................................................TTGTGAATCCGAGACGGAAAGATT...................................................................................................................................................... 24 0 5 0.20 1 0 0 0 0 0 0 1
.............................................................................TTGCGAATCCGAGACGAAAAGAT....................................................................................................................................................... 23 2 5 0.20 1 0 1 0 0 0 0 0
......................................................................TCCGATGTTGCGAATCCGAGACG.............................................................................................................................................................. 23 1 6 0.17 1 0 1 0 0 0 0 0
..............................................................CGTCTTCTTCCGATGTTGT.......................................................................................................................................................................... 19 0 20 0.15 3 0 3 0 0 0 0 0
............................................................GTCGTCTTCTTCCGATGTTGTGAAT...................................................................................................................................................................... 25 0 7 0.14 1 0 1 0 0 0 0 0
...............................................................GTCTTCTTCCGATGTTGTGAAT...................................................................................................................................................................... 22 0 8 0.13 1 0 1 0 0 0 0 0
..................................................................TTCTCCCGATGCTGTGAAT...................................................................................................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 1
...........................................................AGTCGTCTTCTTCCGGTGTTG........................................................................................................................................................................... 21 1 20 0.10 2 0 1 0 0 0 1 0
..............................................................CGTCTTCTTCCGGTGTTGTG......................................................................................................................................................................... 20 1 20 0.10 2 0 2 0 0 0 0 0
...............................................................................................AAAAACGGCTGTAGAGCCTCT....................................................................................................................................... 21 3 11 0.09 1 0 1 0 0 0 0 0
.............................................AAGGACAGGTCGAAAGTCGTCTT....................................................................................................................................................................................... 23 1 19 0.05 1 0 1 0 0 0 0 0
..............................................................CGTCTTCTTCCGATGTTG........................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................TTTCGTCTTCTTCCGATGTTGT.......................................................................................................................................................................... 22 2 20 0.05 1 0 1 0 0 0 0 0
.......................................CAGGACGAGGCCAGGTCG.................................................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0
.........................................................AAAGTCGTCTTCTTCCGATGTCGT.......................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................AGTCGTCTTCTTCCGGTGTTGT.......................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0
...............................CTTGTAGACAAGACGAGGAC........................................................................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................TTTCGTCTTCTTCCGATGTTGTG......................................................................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0 0
...........................................................TGTCGTCTTCTTCCGATGTTGT.......................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................TCGTCTTCTTCCGATGTTG........................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0
............................................................GTCGTCTTCTTCCGATGTT............................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................AGTCGTCTTCTTCCGATGTTGT.......................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:1038526-1038776 - dps_929 CTGCCGTAGTTGCAGAGAGGAGGAGGA------T---ACAGAACATCTGTTCTGCTCCTGTCCAGCTTTCAGCAGAA-GAAGGCTACAACACTTAGGCTCTGCCTTTCT-AACCGACATCTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTAGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA--CTTTGCAG-----------------------GAAAGGAAT--------------GATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAAT
droPer2 scaffold_2:1212105-1212356 - dpe_996 CTGCCGTAGTTGCAGAGACGAGGAGGA------G---ACAGAACATCTGTTCTGCTCCTGTCCAGCTTTCAGAAGAAGAAAGGCTACAACACTTAGGCTCTGCCTTTCT-AACCGACATGTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTGGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA--CTTTGCAG-----------------------GAAAGGAAT--------------GATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAAT
droGri2 scaffold_14983:98513-98790 + TTGCAGAAGCTGCAAAGACGAGGAGGAAGTGGAATCTCCGGAACATTTCTTCTGCCACTGCCCAGCACTTGCTAGGA-AAAGGCTGGAAATCCTGGGAAATTACTCCCT-AATTGATTTATCGGAGCTCCGACACATGAGACTGGCCAAAATAGCGAAATTCATAAACGCATCTGGCTGGTCA-AATGTTTAA--------ATGTTAGAAATG--CTTTGGAGGCACGAC---------------TGCAG----GAGGAAACACCCCTAGATCCCTTTCGGTATCACAACGGGCCAAATATAGCCTAAGT
droAna3 scaffold_13260:1206869-1207129 + CGGACGCAGCTGTAGGGTCAAAGAAGAAGAATAAACTGTTAAGCATCCTCTATGCCACTGCTCAGCCCTGCAGTCTT-TCCGCCTACTACATGTAGGTGATAGGTTTCTTTACCACCATCTCGGTGATGTCAGAAATAGATCCAAACAGCATAGAAAAATTTACTAAAGCCTCAGGGTGGAGAAACTGCTGGA-------------GTTCTTT--CTGCGAAT-----------------------AAAGGGAATTAGATCC-------G---GCTTATGGTATCACAAGAGACCGAAAACGGTCTAAGT
droBip1 scf7180000394278:8183-8442 + CTGCAGAAGCTGTGGGGATGTAGAAGAGGAAGAGGC---A-GACACCTCCTGTGTCAATGCCCTGCGCTGGGGCGCA-GCCGACTCAAATTCTTGGGTGCAGCAATACT-CTCGGACCTAACAGACCTCGCGGAGATCGCTTCACGCAGACTCGTAGCTTTCATCCGTGAATCTGGATAGGACCGC--------------------GAGCCGCCGCA---------GGAAGGATAGAACACTCTTGGGCA---------CATC-----AGTACATGTGCGGTATCACAAGGAGCCCA-AGCGGCTCAAGT
droKik1 scf7180000302693:40789-40884 - ATGCAGAAGCTGCAAAGAACCAAGCGAGCAGGAGACACCAGAGCACCTGTTGTGCCACTGCCCGGCACTCAACAGAC-AAAGAGCCCGACACTTCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491097:26059-26321 - CTGCAAAAACTGCAGGGACGAGGAGGGGAAGGAAACGGTGGAATACCTGTTCTGTTCCTGCCCGGCCCTATGCTGAA-CTAAACTGTACCACTTAGGGAATCCCGTCAT-AAGCAGTCTATCTGAACTGGCGAATATAAGCCTAAAGCGAATAATAAAATTCATGAGAGCTAT--GCTAGGACGGCTGCGGTACGA-------G-CAGTAGA-----------------------CAATAATATAGGGAA----GGAGACAC-------AGATCCACGCGGTATCACAATGAATCTTC-GAGGTCTATGT
droRho1 scf7180000769000:26725-26986 - TTGCAGAAGCTGCAGGGATGAGGAAGAAGAGGAAACGGTGGAACACCTACTCTGTTCATGCCCAGCCCTTTGCGGGC-TCAGACTGAAACACTTAGGATATCCTTTCAT-AAATGACCTGACCGAAATATCGCAGACTAACCTGAAGAGTCTAAGCTCTTTTATTAAATCCTCCGGATGGGGGACCTGCTGATCGACCAACTTA-CAGGCTGACTCT---------TAAC---------------GGATA----GGGGACCCA-----------------AAATCACAATGGACCCACAGAGGTCTAAGT
droBia1 scf7180000301513:17182-17430 + CTGTAGAAATTGCAAGGATAA-----------------AAGAACACCTTCTATGCTTCTGCCCAGCCCTATGCAGAC-TTACACCAAAGCACTTAGAAATCCCCTTCAT-CAACGATTTCACTGAAATATCGGAGATTAGCCATAAAAACATAAATGGGTTTTTAAAATCTTCTGGTATGAATACATGCATATCAACCCAATTC-TTGGTTGATACA---------TTAA---------------AGATA----GAGGAACCA-----AGAAATCATGCGGTATAACAATGG--------AGGTCTAATT
droTak1 scf7180000414659:12947-13225 - TTGTAGAAGCTGCAGGAATGAGGAAGAAGAGGAAACGGTGGAACACCTACTCTGTTCATGCCCAGCCCTGTGCAGGC-TTAGCCTAAAACACTTATGATATCCTTTCAT-AAATGACCTGACCGAAATATCGCAGACTAACCTGAAGAGTCTAAGCTCTTTTATTAAATCCTCCGGATAGCGGACTTGCTGATCGACCAACCTA-CAGGCTGACTCT---------TATC---------------GGATA----GGGGACCCAAAAATAGAGATCATACGGTATCACAATGGACCCACAGAGGTCTACGT
droYak3 2L:21032097-21032358 + CTGCCGTAGCTGTAGAGACGAAGAAATGGAAGAAACGGTAGAGCATCTACTATGCCACCGTCCAGCACTGCAAGCAA-AAAGACTTGCCCAATTAGGAAGCAGATTTCT-GATAGACACGTCCGACCTGTCTGACACCAATCCACATCGGATACAAAAATTCACCAGCGCCTCTGGCTGGGAAAACTGGTAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGGCA----AAAGGGGA-------AAACATACATGGTATCACAATGGACCTCTAATAGTCTAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CTGCCGTAGTTGCAGAGAGGAGGAGGA------T---ACAGAACATCTGTTCTGCTCCTGTCCAGCTTTCAGCAGAA-GAAGGCTACAACACTTAGGCTCTGCCTTTCT-AACCGACATCTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTAGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA--CTTTGCAG-----------------------GAAAGGAAT--------------GATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........TGCAGAGAGGAGGAGGA------T---ACAGAACA.........................................................................................................................................................................................................................................................................2612.0020000000020
..................................................................TTTCAGCAGAA-GAAGGCTACAACG...........................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................CACTATGTCCCAGAAAGATCGCTAACTT.....................................................................................................................................................2811.0010000001000
.....................................................................................................GCCTTTCT-AACCGACATCTCGGAGA.......................................................................................................................................................................................2521.0020200000000
.............................................................................................................................................................................................TGAC--------ATG-AAGTCTCA--CTTTGCAG-----------------------................................................................2311.0010100000000
.............................................................................................................................................CCCAGAAAGATCGCTAACTTTATA.................................................................................................................................................2411.0010000000100
.....................................................................................................GCCTTTCT-AACCGACATCTCG...........................................................................................................................................................................................2121.0020200000000
.....................................................................................................GCCTTTCT-AACCGACATCTCGGA.........................................................................................................................................................................................2320.5010100000000
.....................................................................................................GCCTTTCT-AACCGACATCTCGG..........................................................................................................................................................................................2220.5010100000000
.....................................................................................................GCCTTTCT-AACCGACATCTCGGAGATGT....................................................................................................................................................................................2820.5010000001000
.....................................................................................................GCCTTTCT-AACCGACATCTCGGAG........................................................................................................................................................................................2420.5010100000000
......................................................................................................CCTTTCT-AACCGACATCTCGGA.........................................................................................................................................................................................2220.5010100000000
......................................................................................................................TCTCGGAGATGTCTACACTATGTCT.......................................................................................................................................................................2530.3310100000000
...........................................................................AA-GAAGGCTACAACACTTAGGCTC..................................................................................................................................................................................................................2460.3320200000000
....................................................................TCAGCAGAA-GAAGGCTACAACACTTAGG.....................................................................................................................................................................................................................2860.1710100000000
..............................................................................GAAGGCTACAACACTTAGGCT...................................................................................................................................................................................................................2170.1410100000000
.................................................................................GGCTACAACACTTAGGCTC..................................................................................................................................................................................................................1970.1410100000000
...........................................................................AA-GAAGGCTACAACACTTAGGCT...................................................................................................................................................................................................................2370.1410100000000
.........................................................................................................................CGGAGATGTCTACACTATGTCC.......................................................................................................................................................................2270.1410100000000
.....................................................................CAGCAGAA-GAAGGCTACAACACT.........................................................................................................................................................................................................................23120.0810100000000
.........................................AACATCTGTTCTGCTCCTG..........................................................................................................................................................................................................................................................19200.0510100000000
.....................................................................CAGCAGAA-GAAGGCTACAACAC..........................................................................................................................................................................................................................22200.0510100000000
......................................................................AGCAGAA-GAAGGCTACAACAC..........................................................................................................................................................................................................................21200.0510100000000
....................................................................TCAGCAGAA-GAAGGCTACAACAC..........................................................................................................................................................................................................................23200.0510100000000
..........................................................................................................................................................................................................................................................GGAAT--------------GATCCCAAGCGGTATC.........................21200.0510100000000
....................................................................TCAGCAGAA-GAAGGCTACAA.............................................................................................................................................................................................................................20200.0510100000000
....................................................................TCAGCAGAA-GAAGGCTACAAC............................................................................................................................................................................................................................21200.0510000000010
droPer2
CTGCCGTAGTTGCAGAGACGAGGAGGA------G---ACAGAACATCTGTTCTGCTCCTGTCCAGCTTTCAGAAGAAGAAAGGCTACAACACTTAGGCTCTGCCTTTCT-AACCGACATGTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTGGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA--CTTTGCAG-----------------------GAAAGGAAT--------------GATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................TCTGTTCTGCTCCTGTCCAG.....................................................................................................................................................................................................................................................2041.757430000
..........................................................................................................................................................................................................................TGCAG-----------------------GAAAGGAAT--------------GATCCCAAG................................2320.501010000
.............................................TCTGTTCTGCTCCTGTCCAGC....................................................................................................................................................................................................................................................2140.502020000
.............................................TCTGTTCTGCTCCTGTCCAGT....................................................................................................................................................................................................................................................2150.402020000
...........................................CATCTGTTCTGCTCCTGTCCAGCA...................................................................................................................................................................................................................................................2440.251010000
...........................................CATCTGTTCTGCTCCTGTCCAGC....................................................................................................................................................................................................................................................2340.251010000
...........................................CATCTGTTCTGCTCCTGTCCAGCTAA.................................................................................................................................................................................................................................................2640.251010000
.............................................TCTGTTCTGCTCCTGTCCAGCTA..................................................................................................................................................................................................................................................2340.251010000
.............................................TCTGTTCTGCTCCTGTCCAGCT...................................................................................................................................................................................................................................................2240.251100000
.........................................AACATCTGTTCTGCTCCTGTCCAGC....................................................................................................................................................................................................................................................2540.251010000
...........................................CATCTGTTCTGCTCCTGTCCAGCTA..................................................................................................................................................................................................................................................2540.251010000
........................................GAACATCTGTTCTGCTCCTGTCCA......................................................................................................................................................................................................................................................2460.171010000
........................................................................................................................................................................................ACTGCTGAC--------ATG-AAGTCTCA--CTT............................................................................................2380.131010000
........................................................................................................................................................................................ACTGCTGAC--------ATG-AAGTCTCA--CT.............................................................................................2280.131010000
......................................................................................CAACACTTAGGCTCTGCCTTTC..........................................................................................................................................................................................................22140.071010000
.....................................................................................ACAACACTTAGGCTCTGCCTTTC..........................................................................................................................................................................................................23140.071010000
.....................................................................................ACAACACTTAGGCTCTGCCT.............................................................................................................................................................................................................20150.071010000
......................................................................................CAACACTTAGGCTCTGCGAC............................................................................................................................................................................................................20200.051010000
................................................GTTCTGCTCCTGTCCAGCT...................................................................................................................................................................................................................................................19200.051010000
...............................................TGTTCTGCTCCTGTCCAGC....................................................................................................................................................................................................................................................19200.051010000
..............................................CTGTTCTGCTCCTGTCCAGCT...................................................................................................................................................................................................................................................21200.051010000
droGri2
TTGCAGAAGCTGCAAAGACGAGGAGGAAGTGGAATCTCCGGAACATTTCTTCTGCCACTGCCCAGCACTTGCTAGGA-AAAGGCTGGAAATCCTGGGAAATTACTCCCT-AATTGATTTATCGGAGCTCCGACACATGAGACTGGCCAAAATAGCGAAATTCATAAACGCATCTGGCTGGTCA-AATGTTTAA--------ATGTTAGAAATG--CTTTGGAGGCACGAC---------------TGCAG----GAGGAAACACCCCTAGATCCCTTTCGGTATCACAACGGGCCAAATATAGCCTAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CGGACGCAGCTGTAGGGTCAAAGAAGAAGAATAAACTGTTAAGCATCCTCTATGCCACTGCTCAGCCCTGCAGTCTT-TCCGCCTACTACATGTAGGTGATAGGTTTCTTTACCACCATCTCGGTGATGTCAGAAATAGATCCAAACAGCATAGAAAAATTTACTAAAGCCTCAGGGTGGAGAAACTGCTGGA-------------GTTCTTT--CTGCGAAT-----------------------AAAGGGAATTAGATCC-------G---GCTTATGGTATCACAAGAGACCGAAAACGGTCTAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTGCAGAAGCTGTGGGGATGTAGAAGAGGAAGAGGC---A-GACACCTCCTGTGTCAATGCCCTGCGCTGGGGCGCA-GCCGACTCAAATTCTTGGGTGCAGCAATACT-CTCGGACCTAACAGACCTCGCGGAGATCGCTTCACGCAGACTCGTAGCTTTCATCCGTGAATCTGGATAGGACCGC--------------------GAGCCGCCGCA---------GGAAGGATAGAACACTCTTGGGCA---------CATC-----AGTACATGTGCGGTATCACAAGGAGCCCA-AGCGGCTCAAGTSizeHit CountTotal NormTotal
No Reads
droKik1
ATGCAGAAGCTGCAAAGAACCAAGCGAGCAGGAGACACCAGAGCACCTGTTGTGCCACTGCCCGGCACTCAACAGAC-AAAGAGCCCGACACTTCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTGCAAAAACTGCAGGGACGAGGAGGGGAAGGAAACGGTGGAATACCTGTTCTGTTCCTGCCCGGCCCTATGCTGAA-CTAAACTGTACCACTTAGGGAATCCCGTCAT-AAGCAGTCTATCTGAACTGGCGAATATAAGCCTAAAGCGAATAATAAAATTCATGAGAGCTAT--GCTAGGACGGCTGCGGTACGA-------G-CAGTAGA-----------------------CAATAATATAGGGAA----GGAGACAC-------AGATCCACGCGGTATCACAATGAATCTTC-GAGGTCTATGTSizeHit CountTotal NormTotal
No Reads
droRho1
TTGCAGAAGCTGCAGGGATGAGGAAGAAGAGGAAACGGTGGAACACCTACTCTGTTCATGCCCAGCCCTTTGCGGGC-TCAGACTGAAACACTTAGGATATCCTTTCAT-AAATGACCTGACCGAAATATCGCAGACTAACCTGAAGAGTCTAAGCTCTTTTATTAAATCCTCCGGATGGGGGACCTGCTGATCGACCAACTTA-CAGGCTGACTCT---------TAAC---------------GGATA----GGGGACCCA-----------------AAATCACAATGGACCCACAGAGGTCTAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
CTGTAGAAATTGCAAGGATAA-----------------AAGAACACCTTCTATGCTTCTGCCCAGCCCTATGCAGAC-TTACACCAAAGCACTTAGAAATCCCCTTCAT-CAACGATTTCACTGAAATATCGGAGATTAGCCATAAAAACATAAATGGGTTTTTAAAATCTTCTGGTATGAATACATGCATATCAACCCAATTC-TTGGTTGATACA---------TTAA---------------AGATA----GAGGAACCA-----AGAAATCATGCGGTATAACAATGG--------AGGTCTAATTSizeHit CountTotal NormTotal
No Reads
droTak1
TTGTAGAAGCTGCAGGAATGAGGAAGAAGAGGAAACGGTGGAACACCTACTCTGTTCATGCCCAGCCCTGTGCAGGC-TTAGCCTAAAACACTTATGATATCCTTTCAT-AAATGACCTGACCGAAATATCGCAGACTAACCTGAAGAGTCTAAGCTCTTTTATTAAATCCTCCGGATAGCGGACTTGCTGATCGACCAACCTA-CAGGCTGACTCT---------TATC---------------GGATA----GGGGACCCAAAAATAGAGATCATACGGTATCACAATGGACCCACAGAGGTCTACGTSizeHit CountTotal NormTotal
No Reads
droYak3
CTGCCGTAGCTGTAGAGACGAAGAAATGGAAGAAACGGTAGAGCATCTACTATGCCACCGTCCAGCACTGCAAGCAA-AAAGACTTGCCCAATTAGGAAGCAGATTTCT-GATAGACACGTCCGACCTGTCTGACACCAATCCACATCGGATACAAAAATTCACCAGCGCCTCTGGCTGGGAAAACTGGTAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGGCA----AAAGGGGA-------AAACATACATGGTATCACAATGGACCTCTAATAGTCTAAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................TGCCACCGTCCAGCACTGCAAGCAA-A.......................................................................................................................................................................................................................................2615.00500000000005
..........................................GCATCTACTATGCCACCGTCCAGCACT.................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................TGGTAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGGC.............................................................2811.00100100000000
.................................................................................................................................................................................TGGGAAAACTGGTAAC--------TTC-A........................................................................................................2011.00101000000000
...........................................................................................................CT-GATAGACACGTCCGACCTGTCTGA................................................................................................................................................................................2630.67202000000000
.......................................................................................................ATTTCT-GATAGACACGTCCGACCTG.....................................................................................................................................................................................2520.50101000000000
.........................................................................................................TTCT-GATAGACACGTCCGACCTGTC...................................................................................................................................................................................2520.50100100000000
...........................................................................................................................................................................................GGTAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGGCA----T.......................................................2920.50100000010000
............................................................TCCAGCACTGCAAGCAA-AAAGACT.................................................................................................................................................................................................................................2440.50201100000000
.........................ATGGAAGAAACGGTAGAGCATCTAC....................................................................................................................................................................................................................................................................25200.501002100020005
...........................................................................................................CT-GATAGACACGTCCGACCTGTCTG.................................................................................................................................................................................2530.33101000000000
............................................................................................................................................TCCACATCGGATACAAAAATTCACCAGC..............................................................................................................................................28200.30605100000000
.........................ATGGAAGAAACGGTAGAGCAT........................................................................................................................................................................................................................................................................21200.15301000010001
.............................................................................................................................................................................................TAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGG..............................................................24200.10202000000000
.........................ATGGAAGAAACGGTAGAGCATCT......................................................................................................................................................................................................................................................................23200.10202000000000
.............................................................................................................................................................................................TAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGGC.............................................................25180.06101000000000
.............................................................................................................................................................................................TAAC--------TTC-ACACGAAC--CT---------CGAC---------------GGGCA----........................................................26180.06101000000000
..................................................................................................................................................TCGGATACAAAAATTCACCAGCGCC...........................................................................................................................................25200.05100100000000
.........................ATGGAAGAAACGGTAGAGCATCTA.....................................................................................................................................................................................................................................................................24200.05100000010000
.........................ATGGAAGAAACGGTAGAGCATC.......................................................................................................................................................................................................................................................................22200.05101000000000
......................................................................................................................................................ATACAAAAATTCACCAGCGCCTC.........................................................................................................................................23200.05101000000000
............................................................................................................................................TCCACATCGGATACAAAAATTCACCAG...............................................................................................................................................27200.05101000000000
.............................................................................................................................................................................................TAAC--------TTC-ACACGAAC--CT---------CGAC---------------G................................................................22200.05101000000000
..........................................................................................................................................................AAAAATTCACCAGCGCCTCTGGCTGG..................................................................................................................................26200.05100100000000
............................................................................................................................................TCCACATCGGATACAAAAATTCACC.................................................................................................................................................25200.05100100000000
.....................AGAAATGGAAGAAACGGTAGAGCATC.......................................................................................................................................................................................................................................................................26200.05100000010000
....................................................................................................................................................GGATACAAAAATTCACCAGCGCCTC.........................................................................................................................................25200.05100100000000
.......................................................................................................................................................TACAAAAATTCACCAGCGCCTCTGGC.....................................................................................................................................26200.05100100000000
...........................................................................................................................................................................................................C-ACACGAAC--CT---------CGAC---------------GGGCA----A.......................................................21200.05100000010000
...............................................................................................................ATAGACACGTCCGACCTG.....................................................................................................................................................................................18200.05110000000000
.....................AGAAATGGAAGAAACGGTAGAGCA.........................................................................................................................................................................................................................................................................24200.05101000000000

Generated: 05/17/2015 at 11:40 PM