ID:

dps_922

 Coordinate:

3:813196-813346 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -33.4 -33.3 -33.3

Flybase annnotation

CDS [Dpse\GA13983-cds]; exon [dpse_GLEANR_15063:1]; intron [Dpse\GA13983-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAATTCGTTCCGACTTGGTCCGACTCGACTCCCAGCGCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGTGGCAGAGACGTCGCGACTGGTGCCCCAACAACAACCAAATTGATTAATTCTGCAGGAGGGGCGACAGAGGGTGAGCTAGCCGACGACGACAGTGGCTGAGAC
**************************************************************************************.....((.(((((((.(((........((((((......(((((((....)))))))......)))))))))..)).)))))..)).****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM444067
head
 V112
male body		 SRR902011
testis
 SRR902012
CNS imaginal disc
 GSM343916
embryo
 M062
head
....................................................................................................................................................................................................TTCTGTAGTAGGGGCGACTGA.................................. 21 3 3 5.33 16 13 0 1 2 0 0 0 0
....................................................................................................................................................................................................TTCTGTAGTAGGGGCGACTG................................... 20 3 7 5.14 36 30 0 4 2 0 0 0 0
....................................................................................................................................................................................................TTCTGTAGTAGGGGCGAC..................................... 18 2 3 2.67 8 6 0 2 0 0 0 0 0
.....................................................................................................................................................................................................TCTGTAGTAGGGGCGACTGA.................................. 20 3 5 2.20 11 9 0 1 1 0 0 0 0
..................................................................................................................................................................................................ATTTCTGTAGTAGGGGCGAC..................................... 20 3 4 1.50 6 5 0 0 0 0 0 0 1
......................................................................................................................................................................................................CTGTAGTAGGGGCGACTGA.................................. 19 3 15 1.40 21 19 0 2 0 0 0 0 0
........................................................................................................................................................AGAGACGTCGCGACTGGTGCC.............................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................AAATCGCCGAAACACTCGGAG............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................TCCCAGCGCAGTCCGGGTCC................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCTGTAGTAGGGGCGACTGAG................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGATTAATTCTGCAGGAGGG.......................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................TAGATATAGTATGTGGCAGAG............................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................CTGGTAAGTGAAATTCGTTCC....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTGCAGGAGGGGCGACAGAGGGT.............................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................GAAACACTCGGAGTGCCTGAAC...................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0
........................................................GAAATTCGTTCCGACTTGGTC.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................GCAGAGACGTCGCGACTGGTG................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................CGTTCCGACTTGGTCCGACTC........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................ACTCGACTCCCAGCGCAGTCC....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................AGTTGATTAATACTGCAGGAGT........................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................CAGAGACGTCGCGACTGGTGC............................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................TTAATTCTGCAGGAGGGGC........................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
........................AGTCGCCGAAGCACTCGGAGT.............................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0
............................GCCGAAACACTCGGAGTGCCTGAAC...................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................AGAGACGTCGCGACTGGTGC............................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................GTGAGCTAGCCGACGACGA............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATTCTGTAGTAGGGGCGACTG................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
.................................AACACTCGGAGTGCCTGAAC...................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TTTCTGTAGTAGGGGCGAC..................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTTCTGTAGTAGGGGCGA...................................... 19 3 19 0.11 2 0 0 0 2 0 0 0 0
.............................................................................................................TTGGTCAGCTCTGGGGTAGA.......................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................TTCTGTAGTAGGGGCGACC.................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1
......................................................................................................................................................TCAGAGACGTCTGGACTGG.................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGCGTTTCGGGTCTGTACCTTTGTTTAGCGGCTTTGTGAGCCTCACGGACCATTCACTTTAAGCAAGGCTGAACCAGGCTGAGCTGAGGGTCGCGTCAGGCCCAGGTCCAGCCAGACGAGACCCCATATAGAGTCATCTATATCATACACCGTCTCTGCAGCGCTGACCACGGGGTTGTTGTTGGTTTAACTAATTAAGACGTCCTCCCCGCTGTCTCCCACTCGATCGGCTGCTGCTGTCACCGACTCTG
******************************************************************************.....((.(((((((.(((........((((((......(((((((....)))))))......)))))))))..)).)))))..)).************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
 M022
male body		 M059
embryo
 V112
male body
.........................................................................................................................................................................................................................CCCACTCGATCGGCTGCTG............... 19 0 1 2.00 2 2 0 0 0 0 0
........................................................................................GGTCGCGTCAGGCCCAGGTCC.............................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................GCGTCAGGCCCAGGTCCAGCCAG........................................................................................................................................ 23 0 1 2.00 2 1 1 0 0 0 0
............................................................................................GCGTCAGGCCCAGGTCCAGCCAGA....................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................GTTGTTGGTGTAACTATTT....................................................... 19 2 12 1.67 20 20 0 0 0 0 0
.............................................................................................CGTCAGGCCCAGCTCCAGCC.......................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................CGGGGTTGTTGTTGGTTTAA............................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................ACGGGGTTGTTGTTGGTTTAA............................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TCGGCTGCTGCTGTCACCGAC.... 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................AGGCCCAGGTCCAGCCAGAC...................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................TAAGCAAGGCTGAACCAGGCTGAGG....................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
............................................................................................................CAGCCAGACGAGACCCCATAT.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GCCAGACGAGACCCCATATA......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TCTCCCACTCGATCGGCTGC................. 20 0 1 1.00 1 1 0 0 0 0 0
...........................GCGGCTTTGTGAGCCTCACGGACCATTC.................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................TGAGTAATTAAGACGTCCACC........................................... 21 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................GAGGGTCGCGTCAGGCCCAGG................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
....................TTGTTTAGCGGCTTTGTGAGC.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TCGGTCGGCTGCTGCTGTCAC........ 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................AGGCTGAGCTGAGGGTCGCGT........................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................TGAGCTGAGGGTCGCGTCA......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................................................GCTGAGGGTCGCGTCAGGCC..................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
....................................................................CTGAACCAGGCTGAGCTG..................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0
.........................................................................CCAGGCTGAGCTGAGGGTC............................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.............................................................AGCAAGGCTGAACCAGGCTGAG........................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................GTCAGGCCCAGGTCCAGCCAGA....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................GTCAGGCCCAGGTCCAGCCAG........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................TGAGGGTCGCGTCAGGCCCATG................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................CACTCGATCGGCTGCTGCTGTC.......... 22 0 1 1.00 1 1 0 0 0 0 0
.GCGTTTCGGGTCTGTACCTT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............CTGTCCCTTTGTTTAGCGG............................................................................................................................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................TCGTTGTTGGTGTAACTATTTA...................................................... 22 3 3 0.67 2 2 0 0 0 0 0
..................................................................................................................................................................................TTGTTGGTGTAACTAATTCGG.................................................... 21 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................TCGTTGTTGGTTTAACTATTT....................................................... 21 2 4 0.25 1 0 0 0 0 0 1
................................................................................................................................................................................TGTTGTTGGTGTAACTATTT....................................................... 20 2 5 0.20 1 1 0 0 0 0 0
................................................................................................................................................................................CGTTGTTGGTTTAACTATTT....................................................... 20 2 6 0.17 1 1 0 0 0 0 0
..................................................................................................................................................................................TTGTTGGTGTAACTATTT....................................................... 18 2 17 0.12 2 1 0 0 0 0 1
.................................................................................AGCTGAGGCTCGCGACAGGT...................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0
...........................................................................................CGCGTCAGGCCCGGGTGCCG............................................................................................................................................ 20 3 10 0.10 1 0 0 1 0 0 0
...............................................................................................................................................................................TTGTTGTTGGTTTTACAAATTG...................................................... 22 3 12 0.08 1 0 1 0 0 0 0
...............................................................................................................................................................................ATGTTGTTGGTGTAACTATTT....................................................... 21 3 15 0.07 1 1 0 0 0 0 0
................................................................................................................................................................................GGTTGTTGGTGTAACTATTT....................................................... 20 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:813146-813396 + dps_922 CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAATTCGT--------------------------T-CCG------------------AC-TTGGT------------------------CCGACTCG--------ACTCCCAGCGCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGT-------------------------------------------------------GGCAGAGACGTCGCGACT------------------GGTGCCCCAACAA----CAACCAAATTGATTA-ATTCTGCAG----------G---AG---------------GGG---------C-------------GAC-AG-AGG----------------GT---------------------------G--AG-CTAGCCGACGACGACAGTGGC------------------------------------------TGAGAC
droPer2 scaffold_2:988982-989232 + CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAATTCGT--------------------------T-CCG------------------AC-TTGGT------------------------CCGACTCG--------ACTCCCAGCGCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGT-------------------------------------------------------GGCAGAGACGTCGCGACT------------------GGTGCCCCAACAA----CAACCAAATTGATTA-ATTCTGCAG----------G---AG---------------GGG---------C-------------GAC-AG-AGG----------------GT---------------------------G--AG-CTAGCCGACGACGACAGTGGC------------------------------------------TGAGAC
droWil2 scf2_1100000004954:2045998-2046058 - AAGGAAGGCCCAGACATGGAAGCAAATAGCCGAAACACTTGGTGTGCCTGGTAAGTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:15432424-15432752 + dvi_7090 GCGTAAGGCGCAGACCTGGAAGCAAATTGCCGAAACACTCGGCGTTAGCGGTAAGTGAAATTTTT--------------------------GATGGAACTGTTTGTTTGTAATCAT-CTTGT------------------------CGAAACGG--------GTCCGAAGCGAAGGGTGCAACC---------------------------AGCCCATAAGCTGTGTGGCAAGTGAAATTGGTT---GGGTATCAGCCG------------AGGCAGCTGGCGACGACGATGTCGTTGTCGATGTCGTCGTCGTCGTC---G----------CCGC-TGCAAATTGATTA-ATTCTATGTACG-------GTTAAGAGGTATGGTTGTTTAGGC--GGG--------------------------GA----------------GGG-----CGGGCGCAGAGTGGGCT-GGCA--AC-AGAGACGGAGACGACGACATC------------------------------------------GTCGGC
droMoj3 scaffold_6496:8364695-8364983 - GCGTAAGGCGCAGACTTGGAAGCAAATCGCTGAAACACTTGGAGTTAGCGGTAAGTGAAATTTTA--------------------------G-T---GT-------TG-----------TG-AAA-CGGGTGTCCG------------------------------------AAGGGTGCAACC---------------------------AGCCCATAAGCTGTGTGGCAAGTGAAATTG-------AGTATTGGCCGCGGAGGCAACTAAGGCAGCTGGCG---------------------------CCGTCGTC---G----------TCGC-AGCAAATTGATTAAATTCTGTGTTCGTACACAAGAGAAG--------------AGGC--AGA--------------------------GA----------------GGGTGGAACGGGTGCAGAATGGGCT-GGCA--AC-AGAGGCGACA-----------------------------------TACGACGACATCGTCGACAGCGAC
droGri2 scaffold_15245:12234336-12234567 + GCGCAAAGCACAAACCTGGAAGCAAATCGCCGAAACCCTCGGCGTCAGTGGTAAGTGAAATTTGTTGGCCAAATTCAGAAAAATTCACTCAA-T---GT-------TG-----------CA--------------------------------------------------------------------------------------------------------GCAGCAAGTGAAATTGGTTAGTGGGTATCAGTCG------------A----------------GACGA-GGGT------------CTGCTGTCGCTG-------------C-AGCAAATTGATTA-ATTCTAAGT---------------A---------------GGCA--GAGGGGCAGA------------------------------------------------------GCAGGCT-AGCAACAG-TGAGACGGCGACATCG---TT------------------------------------------CGTCGC
droAna3 scaffold_13266:18464164-18464358 - GCGCAAGGCCCAGACCTGGAAGCAGATTGCCGAAACGCTCGGAGTACCAGGTAAGTGAAATTCGG--------------------------C-TATCTC-------TG------------G-CTCGCGAGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG-------------------ACTGTGTC-CAACAA----C-AAGCAATTGATTG-CTTGTAAAA---------------G---------------GGG------------------------AC-AG-TAG------GCAACGGAGAGT---------------------------G--GT-GCCGTCGACTGAGACAGAG-------CAGAGGCTGAGGCGGCGGC------------------TGAGAC
droBip1 scf7180000394114:19813-20027 - GCGCAAGGCACAGACCTGGAAGCAGATTGCCGAAACGCTCGGTGTACCTGGTAAGTGAAATTCGG--------------------------C-TGACTC-------TG------------G-CTCGCGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAA----C-AAGCAATTGATTG-CTTGTAAAA---------------G---------------GGG---------C-------------CAC-AGTAGAGTGGAGCCATCGG-------------------------------AG--AGTGCCGTCGACGACGACAGTGGCTGAGACAGAGGCTGAGGCGGCGGCTGAGACGGAGGCGGTGGCAGAGAC
droKik1 scf7180000302470:115514-115673 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGT--------------------------C-TGGTTT-------TG------------G-CTA-CGGGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTGCCCCAACAA----C-AGCCAATTGATTA-ATTCTGTAA----------A---GG---------------G-----------------------------------------------------------------------------GGCC--AG-AGAGTCGACGACGGCAGTGGC------------------------------------------CGAGAC
droFic1 scf7180000453955:756380-756552 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGAGTTTTCTGTTCAGCTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGCCCCAACA-------AGCCAATTGATTA-ATTCTGTAA---------------G---------------GGGGCTGA--------------------------GC----------------GGG--------------------AGGGACG--AG-TCAGTCGACGACG--------------------------------------------------------
droEle1 scf7180000491217:467806-467966 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT------TTG------------G-CTA-CGGGTTTTCA-----GCTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGCCCCAACC-------AGTCAATTGATTA-ATTCTCTAA---------------G---------------GGG-----------------------GAC-AG-GGA----------------GCGAAAGA---------------CG---AA--AG-T-------------------------------------------------------------------C
droRho1 scf7180000766409:436052-436225 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT------TTG------------G-CTA-CGGGTTTTTA-----GCTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTTA---------------G---------------GGG-----------------------GAC-AG-GGA----------------GTG--------------------AAAGACA--AG-TCCGTCGACGACGACAG----------------------------------------------------
droBia1 scf7180000302292:3601030-3601204 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------GC-TTCG-CTA-CGGGTTTTCT-----GCTTTCTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGTCCGTGCCCCAGCC-------AGCCAATTGATTA-ATTCTCCGA---------------G---------------GGC---------CGGAGCGGGCCGGGGAC-GG--------------------------------------------------------------------------GC------------------------------------------AGAGAA
droTak1 scf7180000413887:52789-53007 - GCGCAAGGCCCAGACCTGGAAACAAATTGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCAG--------------------------C-TGGTTT------TTG------GCTTTTG-CTA-CGGGTTTTCT-----GCTTTCTGTCTGCTGTCTGCCGTCTTCAGCCTGTAGTCTCTCC---------------------------------------------------------------------------------------------------------------AGT------------CTTCAGTCCGTGCCCCAA-----------CCAATTGATTA-ATTCTGTCC---------------G---------------AGGGCGGG---ACGGG-----------GC-AG-------------------------------------------AGGGACG--AG-TCGGTCGACGACG--------------------------------------------------------
droEug1 scf7180000409462:3423823-3423995 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------T-TGGTTT------TTG------------G-CTA-CGGGTTTCCA-----GCTTTCTGTCTTC---------------------------------------------------------------------------------------------------------------------------------------------AGT------------CGCCAGTCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTAA---------------G---------------GGG-----------------------AGC-AG-AGT----------------GTGAGGGA---------------CGG---------------------------------------------------------------------------GAC
dm3 chr2R:2550213-2550407 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACCAGCCCC-AGCCAATTGATTA-ATTCTGTGC---------------G---------------GGCGCAGG---TCGAA-----------GG-GG-------------------------------------------CGGGACA--AG-TCAGTCGACGACGACG-----------------------------------------------------
droSim2 2r:3414592-3414787 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGCTCCGTGCCCCAACCAGCCCC-AGCCAATTGATTA-ATTCTGCGC---------------G---------------GGCGCGGG---TCGCA-----------GGGGG-------------------------------------------CGGGGCA--AG-TCAGTCGACGACGACG-----------------------------------------------------
droSec2 scaffold_1:216606-216794 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGCT------------TTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACCAGCCCC-AGCCAATTGATTA-ATTCTGTGC---------------G---------------GGCGCGGG---TCGCA-----------GGGGG-------------------------------------------CGGGGCA--AG-TCAGTCGACGACGACG-----------------------------------------------------
droYak3 2L:15295143-15295332 + GCGCAAGGCTCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCTGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTAC---------------G---------------GCAGCGGG---TTGCA-----------GGGAG-------------------------------------------CGGGATA--AG-TCAGTCGACGACGACG-----------------------------------------------------
droEre2 scaffold_4929:19995103-19995292 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCTGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTAC---------------G---------------GGCGCGGG---TCGCA-----------GGGAG-------------------------------------------CGGGACA--AG-TCAGTCGACGACGACG-----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAATTCGT--------------------------T-CCG------------------AC-TTGGT------------------------CCGACTCG--------ACTCCCAGCGCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGT-------------------------------------------------------GGCAGAGACGTCGCGACT------------------GGTGCCCCAACAA----CAACCAAATTGATTA-ATTCTGCAG----------G---AG---------------GGG---------C-------------GAC-AG-AGG----------------GT---------------------------G--AG-CTAGCCGACGACGACAGTGGC------------------------------------------TGAGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................AGAGACGTCGCGACT------------------GGTGCC...............................................................................................................................................................................................................................2111.0010000000010
.......................AAATCGCCGAAACACTCGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................TCCCAGCGCAGTCCGGGTCC...........................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................TGATTA-ATTCTGCAG----------G---AG---------------GG..........................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................TAGATATAGTATGT-------------------------------------------------------GGCAGAG..................................................................................................................................................................................................................................................................2111.0010000001000
...............................................CTGGTAAGTGAAATTCGT--------------------------T-CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................CTGCAG----------G---AG---------------GGG---------C-------------GAC-AG-AGG----------------GT---------------------------...........................................................................2311.0010010000000
...............................GAAACACTCGGAGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
........................................................GAAATTCGT--------------------------T-CCG------------------AC-TTGGT------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................GCAGAGACGTCGCGACT------------------GGTG.................................................................................................................................................................................................................................2111.0010000000010
..............................................................CGT--------------------------T-CCG------------------AC-TTGGT------------------------CCGACTC..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................ACTCG--------ACTCCCAGCGCAGTCC.................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
............................................................................................................................................................................................................................................................................................CAGAGACGTCGCGACT------------------GGTGC................................................................................................................................................................................................................................2111.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................TTA-ATTCTGCAG----------G---AG---------------GGG---------C-------------..................................................................................................................................1911.0010100000000
............................GCCGAAACACTCGGAGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.............................................................................................................................................................................................................................................................................................AGAGACGTCGCGACT------------------GGTGC................................................................................................................................................................................................................................2011.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------G--AG-CTAGCCGACGACGA.......................................................1911.0010100000000
.................................AACACTCGGAGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510010000000
droPer2
CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAATTCGT--------------------------T-CCG------------------AC-TTGGT------------------------CCGACTCG--------ACTCCCAGCGCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGT-------------------------------------------------------GGCAGAGACGTCGCGACT------------------GGTGCCCCAACAA----CAACCAAATTGATTA-ATTCTGCAG----------G---AG---------------GGG---------C-------------GAC-AG-AGG----------------GT---------------------------G--AG-CTAGCCGACGACGACAGTGGC------------------------------------------TGAGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................C-TTGGT------------------------CCGACTCG--------ACTCCC...........................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
.CGCAAAGCCCAGACATGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...............................................................................................................................................................................................................................................................................................AGACGTCGCGACT------------------GGTGCCC..............................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................TTA-ATTCTGCAG----------G---AG---------------GGG---------C-------------GA................................................................................................................................2111.001010000
...............................................................GT--------------------------T-CCG------------------AC-TTGGT------------------------CCGACTC..........................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................C-TTGGT------------------------CCGACTCG--------ACTCC............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................CCAGGTCGGTCTGCTCTGGG.........................................................................................................................................................................................................................................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AGG----------------GT---------------------------G--AG-CTAGCCGT.............................................................2111.001000001
.................................AACACTCGGAGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251100000
droWil2
AAGGAAGGCCCAGACATGGAAGCAAATAGCCGAAACACTTGGTGTGCCTGGTAAGTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................AGCCGAAACACTTGGTGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
droVir3
GCGTAAGGCGCAGACCTGGAAGCAAATTGCCGAAACACTCGGCGTTAGCGGTAAGTGAAATTTTT--------------------------GATGGAACTGTTTGTTTGTAATCAT-CTTGT------------------------CGAAACGG--------GTCCGAAGCGAAGGGTGCAACC---------------------------AGCCCATAAGCTGTGTGGCAAGTGAAATTGGTT---GGGTATCAGCCG------------AGGCAGCTGGCGACGACGATGTCGTTGTCGATGTCGTCGTCGTCGTC---G----------CCGC-TGCAAATTGATTA-ATTCTATGTACG-------GTTAAGAGGTATGGTTGTTTAGGC--GGG--------------------------GA----------------GGG-----CGGGCGCAGAGTGGGCT-GGCA--AC-AGAGACGGAGACGACGACATC------------------------------------------GTCGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................TTT--------------------------GATGGAACTGTTTGTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000100000000000000010000000000000000100000000000000000000000
............................................................TTTTT--------------------------GATGGAACTGTTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000100000000000000000000000010000000000000000000000000000000
...........................................................ATTTTT--------------------------GATGGAACTGTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000200000000000000000000000000000000000000000000000000000000
.....................GCAAATTGCCGAAACACTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................ATGGAACTGTTTGTTTGTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
............................................TTAGCGGTAAGTGAAATTTTT--------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................GGTT---GGGTATCAGCCG------------AGGCA...............................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................ATGGAACTGTTTGTTTGTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTAGGC--GGG--------------------------GA----------------GGG-----CGGGCGCA........................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................CGAAACGG--------GTCCGAAGCGAAG....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.......GCGCAGACCTGGAAGCAAATTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000100000000000000000000000000000000000
....................................ACTCGGCGTTAGCGGTAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGTTGTTTAGGC--GGG--------------------------GA----------------GGG-----CGGG............................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................CAGCTGGCGACGACGATGT..............................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................AGCGAAGGGTGCAACC---------------------------AGCC............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
...........................................................ATTTTT--------------------------GATGGAACTGTTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
............................................................TTTTT--------------------------GATGGAACTGTTTGTTTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................TAATCAT-CTTGT------------------------CGAAACGG--------G................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
...TAAGGCGCAGACCTGGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
GCGTAAGGCGCAGACTTGGAAGCAAATCGCTGAAACACTTGGAGTTAGCGGTAAGTGAAATTTTA--------------------------G-T---GT-------TG-----------TG-AAA-CGGGTGTCCG------------------------------------AAGGGTGCAACC---------------------------AGCCCATAAGCTGTGTGGCAAGTGAAATTG-------AGTATTGGCCGCGGAGGCAACTAAGGCAGCTGGCG---------------------------CCGTCGTC---G----------TCGC-AGCAAATTGATTAAATTCTGTGTTCGTACACAAGAGAAG--------------AGGC--AGA--------------------------GA----------------GGGTGGAACGGGTGCAGAATGGGCT-GGCA--AC-AGAGGCGACA-----------------------------------TACGACGACATCGTCGACAGCGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..GTAAGGCGCAGACTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................ATTG-------AGTATTGGCCGCGGAG...........................................................................................................................................................................................................................................................................................2011.001100000
GCGTAAGGCGCAGACTTGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................AAATTTTA--------------------------G-T---GT-------TG-----------TG-AAA-CG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................GCTGAAACACTTGGAGTTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droGri2
GCGCAAAGCACAAACCTGGAAGCAAATCGCCGAAACCCTCGGCGTCAGTGGTAAGTGAAATTTGTTGGCCAAATTCAGAAAAATTCACTCAA-T---GT-------TG-----------CA--------------------------------------------------------------------------------------------------------GCAGCAAGTGAAATTGGTTAGTGGGTATCAGTCG------------A----------------GACGA-GGGT------------CTGCTGTCGCTG-------------C-AGCAAATTGATTA-ATTCTAAGT---------------A---------------GGCA--GAGGGGCAGA------------------------------------------------------GCAGGCT-AGCAACAG-TGAGACGGCGACATCG---TT------------------------------------------CGTCGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GCGCAAGGCCCAGACCTGGAAGCAGATTGCCGAAACGCTCGGAGTACCAGGTAAGTGAAATTCGG--------------------------C-TATCTC-------TG------------G-CTCGCGAGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG-------------------ACTGTGTC-CAACAA----C-AAGCAATTGATTG-CTTGTAAAA---------------G---------------GGG------------------------AC-AG-TAG------GCAACGGAGAGT---------------------------G--GT-GCCGTCGACTGAGACAGAG-------CAGAGGCTGAGGCGGCGGC------------------TGAGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................TTCGG--------------------------C-TATCTC-------TG------------G-CTCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................AGCAGATTGCCGAAACGCTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
GCGCAAGGCACAGACCTGGAAGCAGATTGCCGAAACGCTCGGTGTACCTGGTAAGTGAAATTCGG--------------------------C-TGACTC-------TG------------G-CTCGCGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAA----C-AAGCAATTGATTG-CTTGTAAAA---------------G---------------GGG---------C-------------CAC-AGTAGAGTGGAGCCATCGG-------------------------------AG--AGTGCCGTCGACGACGACAGTGGCTGAGACAGAGGCTGAGGCGGCGGCTGAGACGGAGGCGGTGGCAGAGACSizeHit CountTotal NormTotal
No Reads
droKik1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGT--------------------------C-TGGTTT-------TG------------G-CTA-CGGGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTGCCCCAACAA----C-AGCCAATTGATTA-ATTCTGTAA----------A---GG---------------G-----------------------------------------------------------------------------GGCC--AG-AGAGTCGACGACGGCAGTGGC------------------------------------------CGAGACSizeHit CountTotal NormTotal
No Reads
droFic1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGAGTTTTCTGTTCAGCTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGCCCCAACA-------AGCCAATTGATTA-ATTCTGTAA---------------G---------------GGGGCTGA--------------------------GC----------------GGG--------------------AGGGACG--AG-TCAGTCGACGACG--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT------TTG------------G-CTA-CGGGTTTTCA-----GCTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGCCCCAACC-------AGTCAATTGATTA-ATTCTCTAA---------------G---------------GGG-----------------------GAC-AG-GGA----------------GCGAAAGA---------------CG---AA--AG-T-------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT------TTG------------G-CTA-CGGGTTTTTA-----GCTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTTA---------------G---------------GGG-----------------------GAC-AG-GGA----------------GTG--------------------AAAGACA--AG-TCCGTCGACGACGACAG----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------GC-TTCG-CTA-CGGGTTTTCT-----GCTTTCTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGTCCGTGCCCCAGCC-------AGCCAATTGATTA-ATTCTCCGA---------------G---------------GGC---------CGGAGCGGGCCGGGGAC-GG--------------------------------------------------------------------------GC------------------------------------------AGAGAASizeHit CountTotal NormTotal
No Reads
droTak1
GCGCAAGGCCCAGACCTGGAAACAAATTGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAATTCAG--------------------------C-TGGTTT------TTG------GCTTTTG-CTA-CGGGTTTTCT-----GCTTTCTGTCTGCTGTCTGCCGTCTTCAGCCTGTAGTCTCTCC---------------------------------------------------------------------------------------------------------------AGT------------CTTCAGTCCGTGCCCCAA-----------CCAATTGATTA-ATTCTGTCC---------------G---------------AGGGCGGG---ACGGG-----------GC-AG-------------------------------------------AGGGACG--AG-TCGGTCGACGACG--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------T-TGGTTT------TTG------------G-CTA-CGGGTTTCCA-----GCTTTCTGTCTTC---------------------------------------------------------------------------------------------------------------------------------------------AGT------------CGCCAGTCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTAA---------------G---------------GGG-----------------------AGC-AG-AGT----------------GTGAGGGA---------------CGG---------------------------------------------------------------------------GACSizeHit CountTotal NormTotal
No Reads
dm3
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACCAGCCCC-AGCCAATTGATTA-ATTCTGTGC---------------G---------------GGCGCAGG---TCGAA-----------GG-GG-------------------------------------------CGGGACA--AG-TCAGTCGACGACGACG-----------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................ATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CG...................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAAACGCTCGGTGTGCCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGTGAAATTCGG--------------------------C-TGGTTT-------TG------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
..............................................................CGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGAAATTCGG--------------------------C-TGGTTT-------TG------------G-C........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-.........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGT......................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAAATCGCCGAAACGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TTCT-----GCTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------C............................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................TGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGT..................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................A-CGGGTTTTCT-----GCTTTCTGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................G--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAATCGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................TGGAAACAAATCGCCGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................CGT------------CTTCGGTCCGTGCCCCAA...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
................TGGAAACAAATCGCCGAAACGCTCGGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGCAAGGCCCAGACCTGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................CGCCGAAACGCTCGGTGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CG...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................T-------TG------------G-CTA-CGGGTTTTCT-----GCTT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............ACCTGGAAACAAATCGCCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................AACGCTCGGTGTGCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGCAAGGCCCAGACCTGGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TGTGCCTGGTAAGTGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAAACAAATCGCCGAAACGCTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................AACAAATCGCCGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGT------------CTTCGGTCCGTGCCCCAC...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................GAAACGCTCGGTGTGCCTGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................AAACGCTCGGTGTGCCTGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............CTGGAAACAAATCGCCGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................GAAACGCTCGGTGTGCCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CCAGACCTGGAAACAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CGCTCGGTGTGCCTGGTAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................AGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCC..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGACCTGGAAACAAATCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................C---------------G---------------GGCGCAGG---TCGAA-----------GG-GG-------------------------------------------C................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGGTAAGTGAAATTCGG--------------------------C-TGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TTGATTA-ATTCTGTGC---------------G---------------GGCG........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CCTGGAAACAAATCGCCGAAACGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGC................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCC..............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAAATCGCCGAAACGCTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GCCTGGTAAGTGAAATTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..GCAAGGCCCAGACCTGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGG.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAATCGCCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................TCGCCGAAACGCTCGGTGTGCCTGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTGAAATTCGG--------------------------C-TGGTTT-------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACAAATCGCCGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................A-CGGGTTTTCT-----GCTTTCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCC...............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGCCGAAACGCTCGGTGTGCCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTGAAATTCGG--------------------------C-TGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................CCTGGTAAGTGAAATTCGG--------------------------C-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....AAGGCCCAGACCTGGAAACAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTGTGCCTGGTAAGTGAAATTCGG--------------------------C-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATCGCCGAAACGCTCGGTGTGCCTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGCTCCGTGCCCCAACCAGCCCC-AGCCAATTGATTA-ATTCTGCGC---------------G---------------GGCGCGGG---TCGCA-----------GGGGG-------------------------------------------CGGGGCA--AG-TCAGTCGACGACGACG-----------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................TTTCT-----GCTTTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------.............................................................................................................................................................................................................................................2111.00100010000000000000
.............ACCTGGAAACAAATCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................GGAAACAAATCGCCGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................AAACGCTCGGTGTGCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................ATTGATTA-ATTCTGCGC---------------G---------------GGCGCG......................................................................................................................................................2411.00101000000000000000
.....................................................AGTGAAATTCGG--------------------------C-TGGTTT-------TG------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................TGGAAACAAATCGCCGAAACGCTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
droSec2
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGCT------------TTCTGTCAGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACCAGCCCC-AGCCAATTGATTA-ATTCTGTGC---------------G---------------GGCGCGGG---TCGCA-----------GGGGG-------------------------------------------CGGGGCA--AG-TCAGTCGACGACGACG-----------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................AAACGCTCGGTGTGCCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................GG---TCGCA-----------GGGGG-------------------------------------------CGGGGC...........................................................................1811.0010001
.................................AACGCTCGGTGTGCCTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010010
droYak3
GCGCAAGGCTCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCTGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTAC---------------G---------------GCAGCGGG---TTGCA-----------GGGAG-------------------------------------------CGGGATA--AG-TCAGTCGACGACGACG-----------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................TCGGTCCGTGCCCCAACC-------AGCC..............................................................................................................................................................................................................2211.00101000000000
droEre2
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGG--------------------------C-TGGTTT-------TG------------G-CTA-CGGGTTTTCT-----GCTTTCTGTCTGC---------------------------------------------------------------------------------------------------------------------------------------------CGT------------CTTCGGTCCGTGCCCCAACC-------AGCCAATTGATTA-ATTCTGTAC---------------G---------------GGCGCGGG---TCGCA-----------GGGAG-------------------------------------------CGGGACA--AG-TCAGTCGACGACGACG-----------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--AG-TCAGTCGACGACGACG-----------------------------------------------------2111.0011000000

Generated: 05/17/2015 at 11:35 PM