ID:

dps_903

 Coordinate:

3:230895-231045 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.5 -29.0 -28.9

Flybase annnotation

exon [dpse_GLEANR_15022:1]; CDS [Dpse\GA14468-cds]; intron [Dpse\GA14468-in]

No Repeatable elements found

mature
  1. 3:220534-220560 +
  2. dps_903  3:231007-231033 +
star
  1. 3:220434-220453 +
  2. dps_903  3:230907-230926 +

Sense Strand Reads

------------######################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATATTAGAAAAATGTCAGAGCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAACAAAATTGATTGTGTGGGTGGCAGGGATAACTTGAAATCCTGTTGCCAGCCGCTTTTGACGTCAGACACGCTGTGCCGCAAAAATAAGAGAACGCCTGATAAGGGACGACAGGAAAAAGATGGCTAAATGCTTGTTTTTCCATTTCATTGGCACGAACATAAAGATATTCGTGCATATTTGCTTCGCGCT
**************************************************************............((((.((((((((((........)))))..))))).))))(((((.((((......((......))...............(((....))))))).)))))..............************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM444067
head
 V112
male body		 M059
embryo
 GSM343916
embryo
..............GTCAGAGCTTCCCAGTGAACTT....................................................................................................................................................................................................................... 22 0 2 1.00 2 0 0 1 1 0 0
..................................................................................................................................................................AGGGACGACAGGAAAAAGATGGCTAAA.............................................................. 27 0 2 1.00 2 0 2 0 0 0 0
.............TGTCAGAGCTTCCCAGTGAACTT....................................................................................................................................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0
..........AAATGTCAGAGCTTCCCAGTGAAC......................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
.........AAAATGTCAGAGCTTCCCAGT............................................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
......................TTCCCAGTGAACTTCAGCAATTCTTCGC......................................................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 1 0
..............GTCAGAGCTTCCCAGTGAACTTCA..................................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 1 0 0
.......................................................................................................................................................AACGCCTGATAAGGGACGACAGGAA........................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TCGTGCATATATGCTTCGCG.. 20 1 2 0.50 1 1 0 0 0 0 0
............ATGTCAGAGCTTCCCAGTGAA.......................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
......................TTCCCAGTGAACTTCAGCAATT............................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
...............................AACTTCAGCAATTCTTCGC......................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.......GAAAAATGTCAGAGCTTCC................................................................................................................................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0
..............................................................AAAATTGATTGTGTGGGTGG......................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0
..........AAATGTCAGAGCTTCCCAGT............................................................................................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................GACAGGAACATGATGGCTAAG.............................................................. 21 3 4 0.25 1 1 0 0 0 0 0
.............................................................................................GGAAATCCTGTTGCAAGCTGCTT....................................................................................................................................... 23 3 4 0.25 1 0 0 1 0 0 0
............................................................................................................................................................CTGAGAAGGGACGAAAGG............................................................................. 18 2 9 0.22 2 2 0 0 0 0 0
.............................................................................................TGAGATCATTTTGCCAGCCGCT........................................................................................................................................ 22 3 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................CTGAGAAGGGACGAAAGGA............................................................................ 19 2 6 0.17 1 1 0 0 0 0 0
.............................................................................................TGAGATCCTTTTGCCAGCTGCT........................................................................................................................................ 22 3 6 0.17 1 0 0 0 0 0 1
....TTAGCAATATGTCAGCGCTTC.................................................................................................................................................................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
...............................................................................................................................................................ATAAGGGACGTCGGCAAAA......................................................................... 19 3 13 0.08 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AGCATAGAGATATTGGTGC................ 19 3 20 0.05 1 1 0 0 0 0 0
.....................................................................ATTTTGTGGGTGGCATGG.................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

TTATAATCTTTTTACAGTCTCGAAGGGTCACTTGAAGTCGTTAAGAAGCGCATTCATTTTTGTTTTAACTAACACACCCACCGTCCCTATTGAACTTTAGGACAACGGTCGGCGAAAACTGCAGTCTGTGCGACACGGCGTTTTTATTCTCTTGCGGACTATTCCCTGCTGTCCTTTTTCTACCGATTTACGAACAAAAAGGTAAAGTAACCGTGCTTGTATTTCTATAAGCACGTATAAACGAAGCGCGA
**************************************************************............((((.((((((((((........)))))..))))).))))(((((.((((......((......))...............(((....))))))).)))))..............************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM444067
head
 M040
female body
 V112
male body
.............TCTGACTCGAAGGGTCACTTGA........................................................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0
...................................................................................................................AAACTGCAGTCTTGGCGA...................................................................................................................... 18 2 5 0.20 1 0 0 1
........................TGGTCAGTTGAAGTGGTTAA............................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0
...............................................................................ACCGTCCCTATTGGAATTG......................................................................................................................................................... 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:230845-231095 + dps_903 AATATTAGAAAAATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAAC------AAAATTG-----A--------TTGTGTGGGTGGCAGGGATAACTTGAAATCCTGTTGCC-------------------------------------------------------------AGCCGCTTTTGACGTCAGACACGCTGT--GCCGCAAAAATAAGAGAACGC--------------------------------------------------------------------------------------------CTGATAAGGGACGACAGGAAAAAGATGGCTAAATGCTTGTTTTTCCATTTCAT---T-----GGCACGAACATAAAGATATTCGTGCATATT-TGCTTC-------------GCGCT
droPer2 scaffold_2:410240-410490 + AATATTAGAAAAATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAAC------AAAATTG-----A--------TTGTGTGGGTGGCAGGGATAACTTGAAATCCTGTTGCC-------------------------------------------------------------AGCCGCTTTTGACGTCAGACACGCTGT--GCCGCAAAAATAAGAGAACGC--------------------------------------------------------------------------------------------CTGATAAGGGACGACAGGAAAAAGATGGCTAAATGCTTGTTTTTCCATTTCAT---T-----GGCACGAACATAAAGATATTCGTGCATATA-TGCTTC-------------ACGCT
droWil2 scf2_1100000004382:1239555-1239631 - AA---------GATGGCAGAAGTACCGCTACCCAATGAACTGCAGCAGCTTTTTGCGTAAGTGAAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTGCGTGAGTGAGT--------------------
droVir3 scaffold_10324:715304-715369 - AAACTTGATAAAATGGCGGA------GCTACCCAGTGAAATGAAACAGCTATTCGAGTAAGTATAAGG------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA
droGri2 scaffold_15245:8426342-8426412 - AAATTTAATAAGATGGCCGA------GCTTCCCAGTGAAATGCAACAGCTATTCGAGTAAGTAGAAA-------------G-----C--------TTGTGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:19242800-19242847 + AA--------AGATGTCAGA------GCTTCCCACTGAACTCCAGCAACTCTTCGCGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396710:131125-131377 - AA--------AGATGGCAGA------GCTTCCCACTGAACTCCAACAACTCTTCGCGTAAGTGCACGATTGCTAAGAATTA-----A--------C--------------------------CGTATGTA-------------------------TAAA----CATATGTACATAAATATGTAAAATTTCTCCTGGGCGTTTCTTGTGTT-----CGCTG-----------AATATGGAAAAGTGTGATAGGGGCTAGTGATAAGCACTATAGGGATAGCAGTCTTGCCAAGTACAATCTGGCACTACATGCACCCATTTAGAGCGAAGAGATTTTCCA------------------------------------------------------------------------------------------------------CACGGAAGCGCC
droKik1 scf7180000301950:1751-1797 + A------------TGGCCAC------GCTTCCTGCTGAACTCCAGCAGTTCTTCTCGTAAGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000452651:15146-15199 + AG------TACGATGGCCGA------GCTTTCGAATGAACTTCAGCAATTATTTGCGTGAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490104:84297-84327 - -----------------------------------TGAACTCCAGCAGTTCTTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777987:13640-13710 + C--------------------------------AATAAACTCCAGGAATTCTTTGCGTAAGTAGAATG-------------ACGATAATGAGTTG---AGTTGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATAAATGACT-T------------------
droBia1 scf7180000302358:30599-30687 + ATTAGAAGTACGATGGCCGA------GCTTCCCAATGAACTCAAGCAGTTATTTGCGTAAGTAGAATA------------GATTATATTGGGTGG---GG----GCGCAGAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413173:16323-16582 + TA--ATAGTACGATGGCAGA------GCTTCCCGATGAACTCCAACAGTTCTTTGCGTATGTATAATT------G-----GATACTATTGGTTAGA--GG----ATGGTGAGAT-----GAGTCCAAATTGTCACACACATACAAAAGCCCCGTACATATATATATATAT--------------------------------------ATATATAT---ATATATA-TAAAACAAAGAACTTT--------------------------------------------------------------------------------------------CCTAATCAG-GACCACTTAAGAATAACAGCA---CGTTCGTTTTGCAAATCTCTTACTGGG-----GCGCATAGTTTATTATTCAAGCTCAT--------------------ATCGAT
droEug1 scf7180000409307:19833-19888 - AG------AACGATGGCCGA------GCTTCCGAAAGAACTTCAGCAACTCTTTGCGTAAGTATAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:1585476-1585709 + A------------TGCCCGA------GTTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAATA------A-----GATGATATTGAATAG---AG----ATGCAAGGAT-----GAAAACATGTA-------------------------CACA----CACTTGCAA------------------------------------GCAAATAT---GTGTATGAAAAAACAACGACGAT---------------------------------------------------------------------------------------------GTTGATAAAAAACCACTTGGAAGAATCAGCT---CGGCTGTATGCCGAATTTGTTAATATGGAGGCACAC-----AATATATGTATGCATAATTTACT-CAAAGTG--------CACA
droSim2 2r:2535683-2535924 + A------------TGTCCGA------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAATA------A-----GATGATATTGAATCG---AG----ATGCAAGGAT-----GAAAACATGTA-------------------------CACA----CACTTGCAA------------------------------------GCAAATAT---GTGTATGAAAAAACAAAGACCAT---------------------------------------------------------------------------------------------GTTGATAAAAAACCACTTGGAAGAATCAGCT---CGGCTGTCTGGCGAATTTGTTACTAAGGAGGCACGC-----AATATATGTATGCATAATTTACT-CAAAGTGCACAATGGCAAC
droSec2 scaffold_26:223102-223343 + A------------TGTCCGA------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAATA------A-----GATGATATTGAATCG---AG----ATGCAAGGAT-----GAAAACATGTA-------------------------CACA----CACTTGCAA------------------------------------GCAAATAT---GTGTATGAAAAAACAAAGACCAT---------------------------------------------------------------------------------------------GTTGATAAAAAACCACTTCGAAGAATCAGCT---CGGCTGTCTGGCGAATTTGTTACTAAGGAGGCACGC-----AATATATGTATGCATAATTTACT-CAAAGTGCACAATGGCAAC
droYak3 2L:20970017-20970071 - AA------CGCGATGTCCGA------GATATCAAGTGAACTTCTAAAATTATTTGCGTAAGTATGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:20782594-20782655 - A------------TGTCCGA------GATATCAAGTGAACTTCTAAAATTATTTGCGTAAGTATCATA------T-----GATGAAATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AATATTAGAAAAATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAAC------AAAATTG-----A--------TTGTGTGGGTGGCAGGGATAACTTGAAATCCTGTTGCC-------------------------------------------------------------AGCCGCTTTTGACGTCAGACACGCTGT--GCCGCAAAAATAAGAGAACGC--------------------------------------------------------------------------------------------CTGATAAGGGACGACAGGAAAAAGATGGCTAAATGCTTGTTTTTCCATTTCAT---T-----GGCACGAACATAAAGATATTCGTGCATATT-TGCTTC-------------GCGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............GTCAGA------GCTTCCCAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2221.0020000011000
......................................................................................................................................................................................................................................................................................................................................................AGGGACGACAGGAAAAAGATGGCTAAA....................................................................................2721.0020000000020
.............TGTCAGA------GCTTCCCAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000010000
..........AAATGTCAGA------GCTTCCCAGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
.........AAAATGTCAGA------GCTTCCCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
............................TTCCCAGTGAACTTCAGCAATTCTTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................2820.5010010000000
..............GTCAGA------GCTTCCCAGTGAACTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000001000
...............................................................................................................................................................................................................................................AACGC--------------------------------------------------------------------------------------------CTGATAAGGGACGACAGGAA.................................................................................................2520.5010100000000
............ATGTCAGA------GCTTCCCAGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
............................TTCCCAGTGAACTTCAGCAATT...................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
.....................................AACTTCAGCAATTCTTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.......GAAAAATGTCAGA------GCTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
..........................................................................AAAATTG-----A--------TTGTGTGGGTGG..........................................................................................................................................................................................................................................................................................................................................................2020.5010000000010
..........AAATGTCAGA------GCTTCCCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
droPer2
AATATTAGAAAAATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAAC------AAAATTG-----A--------TTGTGTGGGTGGCAGGGATAACTTGAAATCCTGTTGCC-------------------------------------------------------------AGCCGCTTTTGACGTCAGACACGCTGT--GCCGCAAAAATAAGAGAACGC--------------------------------------------------------------------------------------------CTGATAAGGGACGACAGGAAAAAGATGGCTAAATGCTTGTTTTTCCATTTCAT---T-----GGCACGAACATAAAGATATTCGTGCATATA-TGCTTC-------------ACGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...ATTAGAAAAATGTCAGA------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........AATGTCAGA------GCTTCCCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............ATGTCAGA------GCTTCCCAGTGAACTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
....TTAGAAAAATGTCAGA------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........AAATGTCAGA------GCTTCCCAGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...ATTAGAAAAATGTCAGA------GCTTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
........AAAAATGTCAGA------GCTTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..TATTAGAAAAATGTCAGA------GCTTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
................................................................................G-----A--------TTGTGTGGGTGGCAGGG.....................................................................................................................................................................................................................................................................................................................................................1911.001000001
droWil2
AA---------GATGGCAGAAGTACCGCTACCCAATGAACTGCAGCAGCTTTTTGCGTAAGTGAAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTGCGTGAGTGAGT--------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................ACCGCTACCCAATGAACTGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300030
................................CAATGAACTGCAGCAGCTTTTTGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
AA---------GATGGCAGAAGTACCGCTACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
AA---------GATGGCAGAAGTACCGCTACCCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
AA---------GATGGCAGAAGTACCGCTACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
AA---------GATGGCAGAAGTACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
................................CAATGAACTGCAGCAGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................GTACCGCTACCCAATGAACTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.............................ACCCAATGAACTGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................GTACCGCTACCCAATGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................AATGAACTGCAGCAGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................CCAATGAACTGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
AAACTTGATAAAATGGCGGA------GCTACCCAGTGAAATGAAACAGCTATTCGAGTAAGTATAAGG------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............ATGGCGGA------GCTACCCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000010000000000000000100000000000000000000000000000000000000
............................TACCCAGTGAAATGAAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000001010
...........................................AACAGCTATTCGAGTAAGTAT.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
....TTGATAAAATGGCGGA------GCTACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
AAACTTGATAAAATGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
..................................GTGAAATGAAACAGCTATT................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
..........AAATGGCGGA------GCTACCCAGTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
AAACTTGATAAAATGGCGGA------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
..........................GCTACCCAGTGAAATGAAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
.................................AGTGAAATGAAACAGCTATT................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
......GATAAAATGGCGGA------GCTACCCAGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
............ATGGCGGA------GCTACCCAGTGAAATGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
...CTTGATAAAATGGCGGA------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
...................A------GCTACCCAGTGAAATGAAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...........................CTACCCAGTGAAATGAAACAGCTATA................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
........TAAAATGGCGGA------GCTACCCAGTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
......GATAAAATGGCGGA------GCTACCCAGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
......GATAAAATGGCGGA------GCTACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
droGri2
AAATTTAATAAGATGGCCGA------GCTTCCCAGTGAAATGCAACAGCTATTCGAGTAAGTAGAAA-------------G-----C--------TTGTGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................CTTCCCAGTGAAATGCAACAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
..ATTTAATAAGATGGCCGA------GCTTCCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
droAna3
AA--------AGATGTCAGA------GCTTCCCACTGAACTCCAGCAACTCTTCGCGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................GA------GCTTCCCACTGAACTCCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2213.003030000
..............GTCAGA------GCTTCCCACTGAACTCCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2612.002110000
..........................GCTTCCCACTGAACTCCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
.................AGA------GCTTCCCACTGAACTCCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
..........................GCTTCCCACTGAACTCCAGCAACTC..................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
AA--------AGATGTCAGA------GCTTCCCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.A--------AGATGTCAGA------GCTTCCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..............................CCCACTGAACTCCAGCAACTCTT................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................GCTTCCCACTGAACTCCAGCAACTCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
................CAGA------GCTTCCCACTGAACTCCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..................GA------GCTTCCCACTGAACTCCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................CTTCCCACTGAACTCCAGCAACTCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...........................CTTCCCACTGAACTCCAGCAACTCTT................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................CAGA------GCTTCCCACTGAACTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.A--------AGATGTCAGA------GCTTCCCACTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.................AGA------GCTTCCCACTGAACTCCAGCAACT...................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...........GATGTCAGA------GCTTCCCACTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
..................GA------GCTTCCCACTGAACTCCAGCAACTC..................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................CACTGAACTCCAGCAACTCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
droBip1
AA--------AGATGGCAGA------GCTTCCCACTGAACTCCAACAACTCTTCGCGTAAGTGCACGATTGCTAAGAATTA-----A--------C--------------------------CGTATGTA-------------------------TAAA----CATATGTACATAAATATGTAAAATTTCTCCTGGGCGTTTCTTGTGTT-----CGCTG-----------AATATGGAAAAGTGTGATAGGGGCTAGTGATAAGCACTATAGGGATAGCAGTCTTGCCAAGTACAATCTGGCACTACATGCACCCATTTAGAGCGAAGAGATTTTCCA------------------------------------------------------------------------------------------------------CACGGAAGCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
A------------TGGCCAC------GCTTCCTGCTGAACTCCAGCAGTTCTTCTCGTAAGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AG------TACGATGGCCGA------GCTTTCGAATGAACTTCAGCAATTATTTGCGTGAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------------------TGAACTCCAGCAGTTCTTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C--------------------------------AATAAACTCCAGGAATTCTTTGCGTAAGTAGAATG-------------ACGATAATGAGTTG---AGTTGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATAAATGACT-T------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTAGAAGTACGATGGCCGA------GCTTCCCAATGAACTCAAGCAGTTATTTGCGTAAGTAGAATA------------GATTATATTGGGTGG---GG----GCGCAGAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TA--ATAGTACGATGGCAGA------GCTTCCCGATGAACTCCAACAGTTCTTTGCGTATGTATAATT------G-----GATACTATTGGTTAGA--GG----ATGGTGAGAT-----GAGTCCAAATTGTCACACACATACAAAAGCCCCGTACATATATATATATAT--------------------------------------ATATATAT---ATATATA-TAAAACAAAGAACTTT--------------------------------------------------------------------------------------------CCTAATCAG-GACCACTTAAGAATAACAGCA---CGTTCGTTTTGCAAATCTCTTACTGGG-----GCGCATAGTTTATTATTCAAGCTCAT--------------------ATCGATSizeHit CountTotal NormTotal
No Reads
droEug1
AG------AACGATGGCCGA------GCTTCCGAAAGAACTTCAGCAACTCTTTGCGTAAGTATAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A------------TGCCCGA------GTTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAATA------A-----GATGATATTGAATAG---AG----ATGCAAGGAT-----GAAAACATGTA-------------------------CACA----CACTTGCAA------------------------------------GCAAATAT---GTGTATGAAAAAACAACGACGAT---------------------------------------------------------------------------------------------GTTGATAAAAAACCACTTGGAAGAATCAGCT---CGGCTGTATGCCGAATTTGTTAATATGGAGGCACAC-----AATATATGTATGCATAATTTACT-CAAAGTG--------CACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................TTGAATAG---AG----ATGCAAGGAT-----GA............................................................................................................................................................................................................................................................................................................................................22116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ATA------A-----GATGATATTGAATAG---AG----A............................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TAAAAAACCACTTGGAAGAATCAGC........................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGATAAAAAACCACTTGGAAGAATCAGC........................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
A------------TGCCCGA------GTTATCAAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AG---AG----ATGCAAGGAT-----GAAAACATG.....................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100
..............GCCCGA------GTTATCAAGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCT---CGGCTGTATGCCGAAT....................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCCCGA------GTTATCAAGTGAACTTCAAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ACTTGGAAGAATCAGCT---CGGC................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCT---CGGCTGTA............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................GATGATATTGAATAG---AG----ATTAT........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............TGCCCGA------GTTATCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................G----ATGCAAGGAT-----GAAAACAA......................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAGGCACAC-----AATA.......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATGGAGGCACAC-----AATATATG...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CCGA------GTTATCAAGTGAACTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AATAG---AG----ATGCAAGGAT-----GAAA..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............GCCCGA------GTTATCAAGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TATCAAGTGAACTTCAAAAATTCTTT...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCCCGA------GTTATCAAGTGAACTTCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGCAAGGAT-----GAAAACATG.....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................GCAAATAT---GTGTATGAAAAAACAACGAC......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ACTTGGAAGAATCAGCT---CGGCTGTA............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................CCGA------GTTATCAAGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................TCAAAAATTCTTTGCGTAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AAATTCTTTGCGTAAGTA......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGCACAC-----AATATATGTA.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGCACAC-----AATATATG...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CTTGGAAGAATCAGCT---CGGCTGTA............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................ATTGAATAG---AG----ATGCAAGGAT-----..............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A------------TGTCCGA------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAATA------A-----GATGATATTGAATCG---AG----ATGCAAGGAT-----GAAAACATGTA-------------------------CACA----CACTTGCAA------------------------------------GCAAATAT---GTGTATGAAAAAACAAAGACCAT---------------------------------------------------------------------------------------------GTTGATAAAAAACCACTTGGAAGAATCAGCT---CGGCTGTCTGGCGAATTTGTTACTAAGGAGGCACGC-----AATATATGTATGCATAATTTACT-CAAAGTGCACAATGGCAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................CACTTGGAAGAATCAGCT---CGGCTG..............................................................................2411.00110000000000000000
.................CGA------GCTATCAAGTGAACTTCAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
A------------TGTCCGA------GCTATCAAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
................CCGA------GCTATCAAGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGGAAGAATCAGCT---CGGCTG..............................................................................2111.00101000000000000000
..............GTCCGA------GCTATCAAGTGAACTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.............TGTCCGA------GCTATCAAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
droSec2
A------------TGTCCGA------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAATA------A-----GATGATATTGAATCG---AG----ATGCAAGGAT-----GAAAACATGTA-------------------------CACA----CACTTGCAA------------------------------------GCAAATAT---GTGTATGAAAAAACAAAGACCAT---------------------------------------------------------------------------------------------GTTGATAAAAAACCACTTCGAAGAATCAGCT---CGGCTGTCTGGCGAATTTGTTACTAAGGAGGCACGC-----AATATATGTATGCATAATTTACT-CAAAGTGCACAATGGCAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............TGTCCGA------GCTATCAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-CAAAGTGCACAATGGCAA.2111.0010001
droYak3
AA------CGCGATGTCCGA------GATATCAAGTGAACTTCTAAAATTATTTGCGTAAGTATGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............GTCCGA------GATATCAAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2213.00301100100000
.............TGTCCGA------GATATCAAGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
..............GTCCGA------GATATCAAGTGAACTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
................CCGA------GATATCAAGTGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............GTCCGA------GATATCAAGTGAACTTCTAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
........CGCGATGTCCGA------GATATCAAGTGAACC............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.............TGTCCGA------GATATCAAGTGAACTTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
A------------TGTCCGA------GATATCAAGTGAACTTCTAAAATTATTTGCGTAAGTATCATA------T-----GATGAAATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................ATATCAAGTGAACTTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000
.....................................AACTTCTAAAATTATTTGCGTAA.........................................................................................................................................................................................................................................................................................................................................................................................................2320.5010001000
.......................................CTTCTAAAATTATTTGCG............................................................................................................................................................................................................................................................................................................................................................................................................1820.5011000000
..............GTCCGA------GATATCAAGTGAACTTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2420.5011000000
..............GTCCGA------GATATCAAGTGAACTTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000100
A------------TGTCCGA------GATATCAAGTGAACTTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010100000
..............GTCCGA------GATATCAAGTGAACTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000

Generated: 05/17/2015 at 11:39 PM