ID:

dps_83

 Coordinate:

4_group4:3553759-3553820 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -16.0 -15.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCCACAAGTAATGATTAAATGAAAATTAAGCAAACACTTCAAGTTTATTACCAGTCCAGATTTGTTAAACGTTACTTTCCTTAACTCGTATCACAGCTCTAGCCTGGCAATTATGCTTGAAAAATACATCTTTTTAGAAAATTTCGATATAAGCGCACAAG

***********************************...(((((((..(((.((((...(((.((((...(((...............)))...)))).)))...)))).)))...)))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011

testis

 M040

female body

 M022

male body		 M062

head

 M059

embryo

 V112

male body		 GSM343916

embryo

 GSM444067

head

 SRR902010

ovaries
.........................................................................................TATCACAGCTCTAGCCTGGCAA................................................... 22 0 1 262.00 262 149 91 2 4 9 6 1 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCA.................................................... 21 0 1 107.00 107 61 38 2 4 1 1 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGG...................................................... 19 0 1 37.00 37 10 22 4 1 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAT................................................... 22 1 1 12.00 12 10 2 0 0 0 0 0 0 0
..................................................ACCAGTCCAGATTTGTTAAACG.......................................................................................... 22 0 1 11.00 11 10 0 0 0 0 1 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGC..................................................... 20 0 1 10.00 10 3 4 2 1 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAAA.................................................. 23 1 1 9.00 9 7 0 0 1 0 0 0 1 0
.........................................................................................TACCACAGTTCTAACCTGGCAA................................................... 22 3 4 7.75 31 6 21 0 4 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAAAA................................................. 24 2 1 7.00 7 7 0 0 0 0 0 0 0 0
..........................................................................................ATCACAGCTCTAGCCTGGCA.................................................... 20 0 1 6.00 6 1 5 0 0 0 0 0 0 0
..........................................................................................ATCACAGCTCTAGCCTGGCAA................................................... 21 0 1 5.00 5 0 5 0 0 0 0 0 0 0
..................................................................................TAACTCGTATCACAGCTCTAGCCTGGC..................................................... 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAAT.................................................. 23 0 1 4.00 4 3 0 0 0 0 0 0 1 0
..................................................ACCAGTCCAGATTTGTTAAACGTTA....................................................................................... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTG....................................................... 18 0 1 4.00 4 0 0 4 0 0 0 0 0 0
.........................................................................................TATTACAGCTCTAGCCTGGCAAAAA................................................ 25 3 2 3.50 7 6 0 0 0 0 0 0 0 1
..................................................ACCAGTCCAGATTTGTTAAACGTTACTT.................................................................................... 28 0 1 3.00 3 2 0 0 0 0 1 0 0 0
..................................................ACCAGTCCAGATTTGTTAAACGTT........................................................................................ 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0
..................................................................................TAACTCGTATCACAGCTCTAG........................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................TAACTCGTATCACAGCTCTAGC.......................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCATA.................................................. 23 2 1 2.00 2 1 0 1 0 0 0 0 0 0
..................................................ACCAGTCCAGATTTGTTAAACGTTAC...................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................TTAACTCGTATCACAGCTCTAGC.......................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAAG.................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGT..................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................................................TTAACTCGTATCACAGCTCTC............................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................ACCAGTCCAGATTTGTTAAAC........................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0
.............................................................................................ACAGCTCTAGCCTGGCAA................................................... 18 0 2 2.00 4 1 1 0 2 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCATTC................................................. 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................ACCAGTCCAGATTTGTTAAACGT......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAACCTGGCAA................................................... 22 1 2 1.00 2 1 0 0 1 0 0 0 0 0
..........................................................................................ATCACAGCTCTAGCCTGGCAAAA................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAAAAAT............................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCAGGCAA................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCC.................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................ACCAGTCCAGATTTGTTAG............................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGA..................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................TAACTCGTACCACAGTTCTAACCTGGCA.................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TACCACAGCTCTAGCCTGGCAA................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAC................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................TTAACTCGTATCACAGCTCTAG........................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCATTT................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTATAGCCTGGCAA................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................ATATCACAGCTCTAGCCTGGCAA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTGGCCTGGCAA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAACA................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCTTTT................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCAATCC................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................ACCAGTCCAGATTTGTTAAA............................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................TTAAACGTTACTTTCCTT............................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCCC................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................TAACTCGTATCACAGCTCTAGCCTGGCAA................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCT.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TAGCAAAGCCCTAGCCTGGCAA................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0
.........................................................................................TTTCACAGCTCTAGCCTGGCAA................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................TATCACAACTCTAGCCTGGCA.................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATTACAGCTCTAGCCTGGCAAGTA................................................ 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATCACAGCTCTAGCCTGGCATTTT................................................ 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................CAGCTCTAGCCTGGCAAC.................................................. 18 1 3 0.33 1 0 0 0 1 0 0 0 0 0
.....................................................................................................AGCCTAGAAATTATGCCTGAA........................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0
..........................................................................................................GGCAATGATGCTCGAAAACT.................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GAGGTGTTCATTACTAATTTACTTTTAATTCGTTTGTGAAGTTCAAATAATGGTCAGGTCTAAACAATTTGCAATGAAAGGAATTGAGCATAGTGTCGAGATCGGACCGTTAATACGAACTTTTTATGTAGAAAAATCTTTTAAAGCTATATTCGCGTGTTC

************************************...(((((((..(((.((((...(((.((((...(((...............)))...)))).)))...)))).)))...)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 GSM343916

embryo
................................................AATTGTCCGGCCTAAACAATT............................................................................................. 21 3 2 0.50 1 1 0
.....................................................TCCGGCCTAAACAATTTGG.......................................................................................... 19 3 10 0.10 1 1 0
.......................................................................................................................................ATCTTTTACAGCCATATT......... 18 2 11 0.09 1 0 1
...................................................................TTCGAAATGATAGGAATTG............................................................................ 19 3 19 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 4_group4:3553709-3553870 + dps_83 confident CTCCACAAGTAATGATTAAATGAAAATTAAGCAAACACTTCAAGTTTATTACCAGTCCAGATTTGTTAAACGTTACTTTCCTTAACTCGTATCACAGCTCTAGCCTGGCAATTATGCTTGAAAAATACATCTTTTTAGAAAATTTCGATATAAGCGCACAAG
droPer2 scaffold_10:2584525-2584686 + dpe_330 candidate-rescued CTCCACAAATAATGATTAAATGAAAATTAAGCAAACACTTCAAGTTTATTACCAGTCCAGATTTTTTAAACGTTACTTTCCTTAACTCGTATCACAATTCTAGCCTGGCAATTTTGCTTGAAAAATACCTCCTTTTAGAACATTTTGAGATAAGCGCACAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CTCCACAAGTAATGATTAAATGAAAATTAAGCAAACACTTCAAGTTTATTACCAGTCCAGATTTGTTAAACGTTACTTTCCTTAACTCGTATCACAGCTCTAGCCTGGCAATTATGCTTGAAAAATACATCTTTTTAGAAAATTTCGATATAAGCGCACAAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................TATCACAGCTCTAGCCTGGCAA...................................................221262.002622919410601490
.........................................................................................TATCACAGCTCTAGCCTGGCA....................................................211107.00107238140010610
.........................................................................................TATCACAGCTCTAGCCTGG......................................................19137.0037422010000100
.........................................................................................TATCACAGCTCTAGCCTGGCAT...................................................22112.001202000000100
..................................................ACCAGTCCAGATTTGTTAAACG..........................................................................................22111.001100000010100
.........................................................................................TATCACAGCTCTAGCCTGGC.....................................................20110.00102401000030
.........................................................................................TATCACAGCTCTAGCCTGGCAAA..................................................2319.0090001010070
.........................................................................................TATCACAGCTCTAGCCTGGCAAAA.................................................2417.0070000000070
..........................................................................................ATCACAGCTCTAGCCTGGCA....................................................2016.0060500000010
..........................................................................................ATCACAGCTCTAGCCTGGCAA...................................................2115.0050500000000
..................................................................................TAACTCGTATCACAGCTCTAGCCTGGC.....................................................2715.0050000000050
.........................................................................................TATCACAGCTCTAGCCTGGCAAT..................................................2314.0040000010030
..................................................ACCAGTCCAGATTTGTTAAACGTTA.......................................................................................2514.0040000000040
.........................................................................................TATCACAGCTCTAGCCTG.......................................................1814.0044000000000
..................................................ACCAGTCCAGATTTGTTAAACGTTACTT....................................................................................2813.0030000001020
..................................................ACCAGTCCAGATTTGTTAAACGTT........................................................................................2412.0020000002000
..................................................................................TAACTCGTATCACAGCTCTAG...........................................................2112.0020000000020
..................................................................................TAACTCGTATCACAGCTCTAGC..........................................................2212.0020000000020
.........................................................................................TATCACAGCTCTAGCCTGGCATA..................................................2312.0021000000010
..................................................ACCAGTCCAGATTTGTTAAACGTTAC......................................................................................2612.0020000000020
.................................................................................TTAACTCGTATCACAGCTCTAGC..........................................................2312.0020000000020
.........................................................................................TATCACAGCTCTAGCCTGGCAAG..................................................2312.0020000000020
.........................................................................................TATCACAGCTCTAGCCTGGT.....................................................2012.0020100000010
.................................................................................TTAACTCGTATCACAGCTCTC............................................................2112.0020000000020
..................................................ACCAGTCCAGATTTGTTAAAC...........................................................................................2112.0020020000000
.............................................................................................ACAGCTCTAGCCTGGCAA...................................................1822.0040102000010
..................................................ACCAGTCCAGATTTGTTAAACGT.........................................................................................2311.0010000000010
..........................................................................................ATCACAGCTCTAGCCTGGCAAAA.................................................2311.0010100000000
.........................................................................................TATCACAGCTCTAGCCTGGCC....................................................2111.0011000000000
..................................................ACCAGTCCAGATTTGTTAG.............................................................................................1911.0010000000010
.........................................................................................TATCACAGCTCTAGCCTGGA.....................................................2011.0010000001000
.........................................................................................TATCACAGCTCTAGCCTGGCAC...................................................2211.0010001000000
.................................................................................TTAACTCGTATCACAGCTCTAG...........................................................2211.0010000000010
.........................................................................................TATCACAGCTCTAGCCTGGCAACA.................................................2411.0010000000010
.........................................................................................TATCACAGCTCTAGCCTGGCAATCC................................................2511.0010000000010
..................................................ACCAGTCCAGATTTGTTAAA............................................................................................2011.0010000000010
.................................................................TTAAACGTTACTTTCCTT...............................................................................1811.0010000000010
.........................................................................................TATCACAGCTCTAGCCTGGCCC...................................................2211.0010000000010
..................................................................................TAACTCGTATCACAGCTCTAGCCTGGCAA...................................................2911.0010000000010
.........................................................................................TATCACAGCTCTAGCCTGGCT....................................................2111.0010000000010
..............................................................................................CAGCTCTAGCCTGGCAAC..................................................1830.3310001000000
droPer2
CTCCACAAATAATGATTAAATGAAAATTAAGCAAACACTTCAAGTTTATTACCAGTCCAGATTTTTTAAACGTTACTTTCCTTAACTCGTATCACAATTCTAGCCTGGCAATTTTGCTTGAAAAATACCTCCTTTTAGAACATTTTGAGATAAGCGCACAATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................TATCACAATTCTAGCCTGGCAA...................................................22818.63149048211088
.........................................................................................TATCACAATTCTAGCCTGGCA....................................................21814.38115038113162
.........................................................................................TATCACAATTCTAGCCTGG......................................................1986.004801405029
.........................................................................................TATCACAATTCTAGCCTGGCAT...................................................2282.63210101019
..........................................................................................ATCACAATTCTAGCCTGGCA....................................................2081.008080000
.........................................................................................TATCACAATTCTAGCCTGGC.....................................................2081.008030203
.........................................................................................TATCACAATTCTAGCCTGGCAAA..................................................2381.008020006
.........................................................................................TATCACAATTCTAGCCTGGCT....................................................2180.887010015
.........................................................................................TATCACAATTCTAGCCTGGT.....................................................2080.887010006
.........................................................................................TATCACAATTCTAGCCTGT......................................................1980.383010002
.........................................................................................TATCACAATTCTAGCCTGGCAAT..................................................2380.383010002
..........................................................................................ATCACAATTCTAGCCTGGCAA...................................................2180.383030000
.........................................................................................TATCACAATTCTAGCCTGGCATC..................................................2380.252000002
.........................................................................................TATCACAATTCTAGCCTG.......................................................1880.252000002
..........................................................................................ATCACAATTCTAGCCTGG......................................................1880.252020000
...........................................................................................TCACAATTCTAGCCTGGCAA...................................................2080.131010000
.........................................................................................TATCACAATTCTAGCCTGGCAAAA.................................................2480.131010000
.........................................................................................TATCACAATTCTAGCCTGGCAC...................................................2280.131000001
.........................................................................................TATCACAATTCTAGCCTGGCTT...................................................2280.131000001
.........................................................................................TATCACAATTCTAGCCTGGCC....................................................2180.131010000
.........................................................................................TATCACAATTCTAGCCTGGCAAGA.................................................2480.131000001
.........................................................................................TATCACAATTCTAGCCTGGCAG...................................................2280.131000001
.........................................................................................TATCACAATTCTAGCCTGGTT....................................................2180.131010000
.........................................................................................TATCACAATTCTAGCCTGGCATCA.................................................2480.131000001
.............................................................................................ACAATTCTAGCCTGGCAA...................................................1880.131001000
.........................................................................................TATCACAATTCTAGCCTGCA.....................................................2090.111010000
.........................................................................................TATCACAATTCTAGCCTGGCCT...................................................22100.101000001

Generated: 10/20/2015 at 06:51 PM