ID:

dps_799

 Coordinate:

2:26012529-26012679 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA27494-cds]; exon [Dpse\GA27494:5]; intron [Dpse\GA27494-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#################---------------------------------
TTGGCAAGATCATAAAAGAAATCTATGTGCAGAGTTTCCGAAGGTAGGCGGGAATCGAGTTGTTGTGAAAAACCCAAGGGCTTTCCGGGTTGGAATGCCGGCGGCGACGGCAGATCATATTTCAACTCAGCCGACAGTATGTGCACCCTCAGCTTGGCTGAGCTCAGATCGAAATTTTGAAAGCTCCTCTTTCAGCTAGAGTGTGCGCGGGACCCCCAATGTAGATGATAGCTTGAGCATGTGAGATGCAC
**************************************************....((((((((..(((...........((((....((((((((((((((.......))))).......)))))))))))))...........)))...))))))))..(((((((((.......)))))..))))((((.......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
 SRR902011
testis
................................................................................................................................................................................................CAGCTAGAGTGTGCGCGGGAC...................................... 21 0 2 1.00 2 2 0 0 0
......................................................................................................................................................................................................................................GCTTGAGCATGTGAGATGCA. 20 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................GAGTGTGCGTGGGACCCCC.................................. 19 1 2 0.50 1 1 0 0 0
.............................................................................................................................................................................................TTTCAGCGAGAGTGTTCGCG.......................................... 20 2 2 0.50 1 0 0 1 0
..............................................................................................................................................GCACCGTCAGCTTTACTGAGC........................................................................................ 21 3 2 0.50 1 0 1 0 0
...............................................................................................................................................................................................TCAGCTAGAGTGTGCGCGGGACCCCCA................................. 27 0 2 0.50 1 1 0 0 0
.................................GTTTGCGCAGGAAGGCGGGAA..................................................................................................................................................................................................... 21 3 5 0.40 2 2 0 0 0
..............................................................................................................................................GCACCTCCAGCTTCGCTGAGCT....................................................................................... 22 3 3 0.33 1 0 1 0 0
.....................................................................................CGGGTTCGAATGCCAGCGGCT................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0
..............................................................................................................................................GCACACTCAGCTTTGATGAGCT....................................................................................... 22 3 4 0.25 1 0 0 1 0
..............................................................................................................................................GCACACTCACCTTTGCTGAGCT....................................................................................... 22 3 4 0.25 1 0 0 1 0
..............................................................................................................................................TCACCCCCAGCTTTGCTGAGCT....................................................................................... 22 3 4 0.25 1 0 1 0 0
..............................................................................................................................................GCACCCCCAGCTTTGATGAGCT....................................................................................... 22 3 5 0.20 1 0 1 0 0
...................................................AATTCGAGTTGTTGTGAA...................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1
.........................................................................................................................TGAACACAGCCGACCGTAT............................................................................................................... 19 3 13 0.08 1 0 0 1 0
..................................................................................TTCCGGGTTCGAGTCCCGGCG.................................................................................................................................................... 21 3 15 0.07 1 1 0 0 0

Anti-sense strand reads

AACCGTTCTAGTATTTTCTTTAGATACACGTCTCAAAGGCTTCCATCCGCCCTTAGCTCAACAACACTTTTTGGGTTCCCGAAAGGCCCAACCTTACGGCCGCCGCTGCCGTCTAGTATAAAGTTGAGTCGGCTGTCATACACGTGGGAGTCGAACCGACTCGAGTCTAGCTTTAAAACTTTCGAGGAGAAAGTCGATCTCACACGCGCCCTGGGGGTTACATCTACTATCGAACTCGTACACTCTACGTG
**************************************************....((((((((..(((...........((((....((((((((((((((.......))))).......)))))))))))))...........)))...))))))))..(((((((((.......)))))..))))((((.......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 SRR902011
testis
 M022
male body		 M059
embryo
 GSM444067
head
...................................................................TTCGTGGGTTCCGGAAAGGC.................................................................................................................................................................... 20 3 13 6.77 88 80 6 0 0 1 1 0
..........................................................................................................................................TATACGTGGGTGTCGAAGC.............................................................................................. 19 3 20 2.00 40 35 5 0 0 0 0 0
......................................................................................................CCGCTGCCGTCTAGTATAAAG................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TATCGAACTCGTACACTCTAC... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................TTCTTGGGTTCCGGAAAGGC.................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................CCGACTCGAGTCTAGCTTT............................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................GTTGAGTCGGCTGTCATACAC............................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................................................................ACTTTCGAGGAGAAAGTCGA...................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0
.........................ACACGTCTCAAAGGCTTCCAT............................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................GAGTCGGCTGTCATACACGT.......................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGGGGGTTACATCTACTATC.................... 21 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................GGCTGTCATACACGTGGGAG..................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0
.....TTCTAGTATTTTCTACAGACACA............................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 1 0 0 0 0
......TCTAGTATTTTCTACAGACACA............................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
.........................................................................................................................................................AAACGACTCGAGTGTAGATTT............................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0
....................TAGATAGAGCTCTCAAAGG.................................................................................................................................................................................................................... 19 3 20 0.15 3 3 0 0 0 0 0 0
....................................................................TCTTGGGTTCCGGAAAGGCG................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0
..........................................................................................................................................TATACGTGGGTGTCGAAC............................................................................................... 18 2 11 0.09 1 0 1 0 0 0 0 0
..................................................................................................................AGGATAATGTTGAGCCGG....................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................TCTCGAACCGCCTCGAGTC.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:26012479-26012729 + dps_799 TTGGCAAGATCATAAAAGAAATCTATGTGCAGAGTTTCCGAAGGTAGGCGGGAAT-------------------------------CGAGTTGTTGTGAAAAACCCAAGGGCTTTCCGGGTTGGAATGCCGGCGGCGACGGC---------AGATCATATTTCAACTCAGCCGACAGTATGTGCACCCTCAGCTTGGCTGAGCTCAGATCGAAATTTTGAAAGCTCCTCTTTCAGCTAGAGTGTGCGCGGGACCCCCAATGTAGATGATAGCTTGAGCATGTGAGATGCAC
droPer2 scaffold_6:1344483-1344758 + TTGGCAAGATCATAAAAGAAATCTATGTGCAGAGTTTCCGAAGGTAGGCGGGAATACTGAGGGGAGGTTGAAGTACGCAAAATATGC-----GTTGTGATGAGCCCAAGGGC----------GGAATGCCGGCGGCGACGGCACAGCTATCAGATCATATTTCAACTCAGCCGACAGTATGTGCACCCTCGGCTTGGCTGAGCTCAGATATAAATTTTGAAAGCTCCTCTTTCAGCTAGAGTGTGCGCGGGACCCTCAATGTAGATGATAGCTTGAGCATGTGAGATGCAC
droTak1 scf7180000415310:2236-2248 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACGTGAGCTGC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTGGCAAGATCATAAAAGAAATCTATGTGCAGAGTTTCCGAAGGTAGGCGGGAAT-------------------------------CGAGTTGTTGTGAAAAACCCAAGGGCTTTCCGGGTTGGAATGCCGGCGGCGACGGC---------AGATCATATTTCAACTCAGCCGACAGTATGTGCACCCTCAGCTTGGCTGAGCTCAGATCGAAATTTTGAAAGCTCCTCTTTCAGCTAGAGTGTGCGCGGGACCCCCAATGTAGATGATAGCTTGAGCATGTGAGATGCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................CAGCTAGAGTGTGCGCGGGAC......................................2121.0020200000000
..............................................................................................................................................................................................................................................................................GCTTGAGCATGTGAGATGCA.2011.0010000100000
.......................................................................................................................................................................................................................................TCAGCTAGAGTGTGCGCGGGACCCCCA.................................2720.5010100000000
droPer2
TTGGCAAGATCATAAAAGAAATCTATGTGCAGAGTTTCCGAAGGTAGGCGGGAATACTGAGGGGAGGTTGAAGTACGCAAAATATGC-----GTTGTGATGAGCCCAAGGGC----------GGAATGCCGGCGGCGACGGCACAGCTATCAGATCATATTTCAACTCAGCCGACAGTATGTGCACCCTCGGCTTGGCTGAGCTCAGATATAAATTTTGAAAGCTCCTCTTTCAGCTAGAGTGTGCGCGGGACCCTCAATGTAGATGATAGCTTGAGCATGTGAGATGCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................CGCAAAATATGC-----GTTGTGATGAGCC..........................................................................................................................................................................................2512.002200000
.............................CAGAGTTTCCGAAGGTAGGCG.................................................................................................................................................................................................................................................2111.001000001
.................................................................................ATATGC-----GTTGTGATGAGCC..........................................................................................................................................................................................1911.001000001
...........................TGCAGAGTTTCCGAAGGTAGGT..................................................................................................................................................................................................................................................2211.001000001
...........................................GTAGGCGGGAATACTGAGGGG...................................................................................................................................................................................................................................2111.001000001
...................................................GAATACTGAGGGGAGGTTGA............................................................................................................................................................................................................................2011.001000001
....................ATCTATGTGCAGAGTTTCCG...........................................................................................................................................................................................................................................................2011.001000010
.......................TATGTGCAGAGTTTCCGAAGG.......................................................................................................................................................................................................................................................2111.001010000
droTak1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACGTGAGCTGC--SizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 11:18 PM