ID:

dps_785

 Coordinate:

2:25579106-25579256 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [Dpse\GA13189:3]; CDS [Dpse\GA13189-cds]; intron [Dpse\GA13189-in]

No Repeatable elements found

Sense Strand Reads

-------------#####################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAGCAGAGACAGCATGACAGCACTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGTGTAAGCGAGACAGCAGTGAGTGGGTGTGAGATTGCGAGTGGGAGTGGAGATCGGGAGACAGTGAGTGGTCTTATCGCATGCCCCTGAACATCGCCATAAAACATGGTCGAGAGGGGTCTTATCGAGGCATTCTGCACATCTATCACAGCTGCAATCAGCGTCAGTCGAGCAGGAATATCGTATATGAACATCG
**************************************************............((......)).....((((((((((((.(((..(((.((...(((((((............))))))).)).)))((((((.....(((((((.....)))).))).)))))).........))).))).)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 M059
embryo
 GSM444067
head
 M022
male body
......................................................................................AGACAGCGAGTGGGAGTGGA................................................................................................................................................. 20 2 12 35.25 423 350 73 0 0 0 0
....................................................................................TAAGACAGCGAGTGGGAGTGGA................................................................................................................................................. 22 3 8 6.63 53 43 10 0 0 0 0
.....................................................................AGCAGAGAGTGGCTGTGAG................................................................................................................................................................... 19 2 7 4.57 32 32 0 0 0 0 0
.................CAGCACTGGGATTAGTTCTGCT.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
...................GCACTGGGATTAGTTCTGC..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.....................ACAGGGATTAGTTGTTCTATC................................................................................................................................................................................................................. 21 3 1 1.00 1 0 0 0 0 1 0
............................TTAGTTCTGCTATCAATGATGGGC....................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................AGCAGAGAGTGGCTGTGAGA.................................................................................................................................................................. 20 2 2 1.00 2 2 0 0 0 0 0
.....................ACTGGGATTAGTTCTGCTATC................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
.AGCAGAGACAGCATGACAGCACTGG................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0
............................TTAGTTCTGCTATCAATGATGGGCT...................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0
...............GACAGCACTGGGATTAGTTCTGCTAT.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0
.....................................................................AGCAGAGAGTGGCTGTGA.................................................................................................................................................................... 18 2 15 0.67 10 10 0 0 0 0 0
......................................................................................AGACCGCGAGTGGGAGTGGA................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0
.....................................................................AGCAGAGAGTGGCTGTGAGT.................................................................................................................................................................. 20 3 18 0.50 9 7 2 0 0 0 0
......................................................................................AGACAGCGAGTGGGAGTGGAT................................................................................................................................................ 21 3 19 0.37 7 6 1 0 0 0 0
............................................................................................CGAGTGGGAGTGGAGACAG............................................................................................................................................ 19 2 6 0.33 2 2 0 0 0 0 0
..........................................................................................AGCGAGTGGGAGTGGAGAC.............................................................................................................................................. 19 2 6 0.33 2 1 0 0 0 0 1
....................................................................GAGCAGAGAGTGGCTGTGAGA.................................................................................................................................................................. 21 3 10 0.30 3 3 0 0 0 0 0
....................................................................................TAAGATAGCGAGTGGGAGTGG.................................................................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0
.....................................................................AGCAGAGAGTGGCTGTGAGTT................................................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0
..........................................................................................AGCGAGTGGGAGTGGAGA............................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0
.....................................................................AGCAGAGAGTGGCTGTGAGGTT................................................................................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0
...........................................................................................GCGAGTGGGAGTGGAGACA............................................................................................................................................. 19 2 10 0.20 2 2 0 0 0 0 0
......................................................................................AGACAGCGAGTGGGAGTGGAG................................................................................................................................................ 21 2 5 0.20 1 1 0 0 0 0 0
.....................................................................................GAGACAGCGAGTGGGAGTGGA................................................................................................................................................. 21 2 6 0.17 1 1 0 0 0 0 0
......................................................................GCAGAGAGTGGCTGTGAGA.................................................................................................................................................................. 19 2 7 0.14 1 0 1 0 0 0 0
.................................................................ATGCAGCAGTGAGTGGGT........................................................................................................................................................................ 18 2 7 0.14 1 0 1 0 0 0 0
......................................................................................AGACAGCGAGTGGGAGTGGACA............................................................................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0
...................................................................................................................................................................GTCGAGAGGTGTCTGATCAA.................................................................... 20 3 8 0.13 1 1 0 0 0 0 0
......................................................................................AGACATCGAGTGGGAGTGGAG................................................................................................................................................ 21 3 10 0.10 1 0 1 0 0 0 0
.....................................................................................................................................GCATGCCATTGAACATCGCG.................................................................................................. 20 3 12 0.08 1 1 0 0 0 0 0
.........................................................................................TTGCGAGTGGGACTGCCGAT.............................................................................................................................................. 20 3 16 0.06 1 0 0 0 0 1 0
............................................................................................................................................................................................................ATCTGCAATCAGCTTCAGGC........................... 20 3 18 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

TTCGTCTCTGTCGTACTGTCGTGACCCTAATCAAGACGATAGTTACTACCCATTCACACATTCGCTCTGTCGTCACTCACCCACACTCTAACGCTCACCCTCACCTCTAGCCCTCTGTCACTCACCAGAATAGCGTACGGGGACTTGTAGCGGTATTTTGTACCAGCTCTCCCCAGAATAGCTCCGTAAGACGTGTAGATAGTGTCGACGTTAGTCGCAGTCAGCTCGTCCTTATAGCATATACTTGTAGC
**************************************************............((......)).....((((((((((((.(((..(((.((...(((((((............))))))).)).)))((((((.....(((((((.....)))).))).)))))).........))).))).)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
......................................................................................TCTGTCGCTCACCCTCACCT................................................................................................................................................. 20 2 12 9.08 109 106 3 0 0 0
....................................................................................ATTCTGTCGCTCACCCTCACCT................................................................................................................................................. 22 3 8 1.50 12 10 2 0 0 0
............GTACTGTCGTGACCCAAATG........................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................GATAGTGTCGACGTTAGTC................................... 19 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................TAGCGTACGAGGACTGGTA...................................................................................................... 19 2 1 1.00 1 1 0 0 0 0
.......................................................................................................................................TACGGGGGCTTGCAGCGATA................................................................................................ 20 3 3 0.33 1 0 1 0 0 0
...................................................................................................................................GGCGTACGGGGTCTTGTAGGGG.................................................................................................. 22 3 3 0.33 1 0 0 1 0 0
.....................................................................................CTCTGTCGCTCACCCTCACCT................................................................................................................................................. 21 2 6 0.33 2 1 1 0 0 0
....................................................................................................................................GCGTACGAGGACTGGTAG..................................................................................................... 18 2 4 0.25 1 0 0 0 1 0
......................................................................................TCTGTCGCTCACCCTCACCTC................................................................................................................................................ 21 2 5 0.20 1 1 0 0 0 0
.......................................................................................................................................TACGGGGGCTGGTAGCGATA................................................................................................ 20 3 5 0.20 1 0 1 0 0 0
..........................................................................................................................................GGGGACTTCTGGCGGTATTC............................................................................................. 20 3 13 0.15 2 2 0 0 0 0
......................................................................................................................................................................................................................ACGCAATCAGCTCATCCTT.................. 19 3 12 0.08 1 1 0 0 0 0
.......................................................................................................................................TACGGGGGCTTGTAGGGAT................................................................................................. 19 3 20 0.05 1 0 1 0 0 0
...................................................................................CATTCTGTCGCTCACCCTCAC................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................GCAGTCAGCGCGGCCTTG................. 18 3 20 0.05 1 1 0 0 0 0
..............................................................................................................................................ACTTGGAACGGTGTTTTGTA......................................................................................... 20 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:25579056-25579306 - dps_785 AAGCAGAG----ACAGCATGACAGCACTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGTGTAAGCGAGACAGCAGTGAGTGGGTGTGAGATTGCGAGTGGGAGTGGAGATCGGGAGACAGTGAGT---GGTCT--------------------------------TATCG-CATGCCCCTGAACAT---C-GCCATAAAACAT-GG------T-C-GAGA-GGGGTCTTA---------------------------------------------------------------------------------------TCGAGGCATTCTGCACATCTATCA---CAGCTG-CAATCAGCGTCAGT-CGAG--CAGGAATATCGTA-------------TATGA-------ACATCG
droPer2 scaffold_6:906779-907029 - dpe_1875 AAGCAGAG----ACAGCATGACAGCACTGGGATTAGTTTTGCTATCAATGATGGGTAAGTGTGTAAGCGAGACAGCAGTGAGTGGGAGTGAGATTGCGAGTGGGAGTGGAGATCGGGAGACAGTGAGT---GGTCT--------------------------------TATCG-CATGCCCCTGAACAT---C-GCCATAAAACAT-GG------T-C-GAGA-GGGGTCTTA---------------------------------------------------------------------------------------TCGAGGCATTCTGCACATCTATCA---CAGCTG-CAATCAGCGTCAGT-CGAG--CAGGAATATCGTA-------------TATGT-------ACATCG
droWil2 scf2_1100000004902:4198731-4198976 + -----------------ATGACAGCAATGGGATTACTTTTGCTATCAATGATGGGTAAGTGA---------------------------------------------------GAGCTCACAGACAGCCCAGTCCT--------------------------------GCCCACCAACACCCATA--TCTAACC---------AATAAG-CCA------------------TATCAGTGCGACCCTGAAAAAAAAAACGATAAAAACAAAAATA-GGCAACAGTTAGCTTGTTAGA--GAAACGACC-------TTCTTATCAGCGCATTCTGCGCGCCTGTCA-----CCGG-CAATTAAATTCAGT-C-CG--CCCTGAAAG-----A--GATAA----T------------TATCT
droVir3 scaffold_12855:9738692-9738735 - ------------------TGACAGCACTTGGATTACTTTTGTTATCTATGATGGGTAAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:24766073-24766124 - G-----------CCAGTATGACAGCACTTGGATTACTTTTGCTATCTATGATGGGTAAGTGT---------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14830:2109586-2109638 - CTGCA---------AGTATGACAGCACTTGGATTACTTTTGCTATCAATGATGGGTAAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:13717151-13717362 - dan_3073 ATATCAAG----ACATCATGACTGCCCTGGGATTAGTTTTGCTATCAATGATGGGTAAGTTA-------------------------------TTT-----------------CGAGTGCCGGTGAATA--CTTGTTATCGGAGGAGGGCGGCGGAATGCTGA------------TAGCTCCTGCTC------------------------------------ACCTGCCTTATCG-AGGG--------------------------------------------GGG------------------C-------TG--C-TCTTTGGTTTCTGGGCGCCCATCC---G-CTCGTCAATC-GCGTCAGC-TGGG--CCCTGATAATCCATA------------------------TATTA
droBip1 scf7180000396615:371436-371634 - AGA----------CATCATGACAGCACTGGGATTAGTTTTGCTATCAATGATGGGTAAGTTA-------------------------------TTTCGAGGG---C-------CGGTTATC-GGGAGT----------------------GGA-GAATGCTGATAGCTTCTC---------------------------------------------------ACCTGCCTTATCGGCAGG--------------------------------------------GGG------------------C-------TG--T-TCTTTAATTTCTGGGCGCCCATTC---G-CTTGTCAATC-GCGTCAGC-TGGG--CCCTGATAATATTAT--A----------AGT--ATAATATAATA
droKik1 scf7180000302256:773311-773506 - AAG----------CAACATGACAGCATTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGT---------------------------------------------------CGTGTGCTCGAGAGGC-TTTCCT--------------------------------TATCGAGT-----------CT--GCCA--------AATTGGAGAAGATATCA--CACCTG------------------------------------------------------------------------------C-------TC--C-TCTACAATTTCTGCTCGCCCGTCCGTCCACCTG-CAATCAGTGTCCGC-TGAG--CCCTGACAGCTGTTA--TATA-----CATAT-------TTAATA
droFic1 scf7180000453488:565370-565602 + CAACATA-----ACGAAATGACGGCACTGGGATTAGTTTTGCTAACAATGATGGGTAAGTTC---------------------------------------------------AGGGTGTTGGGAAGAC--TTTCT--------------------------------TATCGCATTGCCCCTGAAATT--GTA---------AACCCA-GGAGATATTA--A---AGTCTTATCA-GGGG--------------------------------------A---------------ATCGG-----TTTGAT-TTTA--A-AATAAAATTTCTGGGCGCCCATCA-----ACTG-CAATCAGCGTCAGT-TGAG--CACTGATAGCCACACACAGTAATGTATATAT-------GCAACG
droEle1 scf7180000491080:2416736-2416946 + AAACA-------GCAACATGACAGCACTGGGATTAGTTTTGCTATCAATGATGGGTAAGTGG---------------------------------------------------CGGGTGTTAGAGAGCC--TTTGT--------------------------------TATCGACATGCCCCTGGGAAT--GTG---------AATCGG-ATAGATAGCA--A-G-CCTCTTATCG-GGGG--------------------------------------T--ATGGG---------TCGG------T---T-CTTT--T-TTTTTAACTTCTGCGCTCCCAACA-----CCTG-CAATCAGCGTCAGC-TGAG--CACTGATAACCCCCC----------------------------G
droRho1 scf7180000779097:33653-33854 + -------------CAACATGACAGCACTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGG---------------------------------------------------CGAGTGTTAGAGAGGC--CTTCT--------------------------------TATCGACAAGCCCCTGGGAAT--GTG---------CCTCTG-ATAGATAGCA--C--ACGCCTTATCG-CGG--------------------------------------------------------------------------------TTTTTAATTTCTGCGCGCCCATCA-----CCTG-CAATCAGCGTCAGC-TGAG--CACTGATAGCCTGAC--ACTAA----TATAT-------GCATCG
droBia1 scf7180000302075:3471230-3471454 + AAACAACA----GCAACATGACGGCACTGGGATTAGTTTTGCTATCCATGATGGGTAAGTGG---------------------------------------------------CGGGCTTTTGGGGCT-TGCTTCT--------------------------------TATCGACATGCCCCTGAGAGC--ACCAA-------AATTGA-CTAGATAC-ACGA-GCCGCCTTATCG-CAGT-------------------------------------------GGTGATTT----TCAG------T---T-CTTT--T-TGCTGGACTTCTGGGCGCCCATCA-----AGTG-CAATCAGCGTCAGC-TGAT----------------------AA----TATATGTTCCGTATAATG
droTak1 scf7180000415763:145875-146096 + -------------CAACATGACAGCACTGGGATTAGTTTTGCTATCCATGATGGGTAAGTGC---------------------------------------------------CGGGTGTTAGAGAGTC--TTCCT--------------------------------TATCGACATGCCCCTGAGAGT--ACG-ATATACGAAATTGG-GGAGATAGCG--A-ACCGCCTTATCG-CAGT--------------------------------------A--ATGGT---------TAGG------T--TTT-TAT--T-TTTTGAATTCCTGAGCGCCCATCA-----ACTG-CAATCAGCGTCAGC-TGAG--CAGTGATAGCCCCAC--GATAA----TA---------------T
droEug1 scf7180000409797:908817-909028 - AAGCAAAG---AGCAACATGACAGCTTTGGGATTAGTTCTGCTATCGATGATGGGTAAGTGC---------------------------------------------------CGGGTGTTAGAGTC--TTTTTCT--------------------------------TATCAACTTGCCCCTGAGAAT--ATA---------AATTGG-GGAGATAGTACC-ACCGGTCTTATCG-CA-------------------------------------------------------------------TTTTTTGTTT--T-TGTTAAATTCCTGAGCGCCCATCA-----CCTG-TAATCAACGTCAGCCTGAG--CAGTGATAACCTCGC--A-------------------------G
dm3 chr3R:7283127-7283361 - CAGCTAAAAGCAGCAACATGACAGCACTGGGATTAGTTCTGCTATCGATGATGGGTAAGTGC---------------------------------------------------CGGGTGTTAGGGTGC-TTTTCCT--------------------------------TATCGCCATGCCCCTGAGAACTTACC---------AATTGT-GCAGATAGCA---------------------------------------------CCCGGTATG-GGAAT--GTGGGGCTATAAGATCGG-----GTT-----TTT--T-TTTTGAATTCCTGAGCGCCCAGCA-----AGTG-CAATCTGCGTCAGC-TGAGCGCACTGATAGCCCAGA--GATAA----T----------------A
droSim2 3r:13818208-13818432 + dsi_15836 -------------CAACATGACAGCACTGGGATTAGTTCTGCTATCGATGATGGGTGAGTGC---------------------------------------------------CGGGTGTTAGGGAGC-TTTTCCT--------------------------------TATCGCCATGCCCCTGGGAACCAACC---------AATTGT-GCAGATAGCA---------------------------------------------CCCGGAATG-GGAAT--GTGGTGCTATAAGATCGA-----GTTTTTT-TTT--T-TTTTGAATTCCTGAGCGCCCAGCA-----AGTG-CAATCTGCGTCAGC-TGAGCGCACTGATAGCCCAGA--GATAA----T-----------------
droSec2 scaffold_0:14680328-14680550 + AAGCA-------GCAACATGACAGCACTGGGATTAGTTCTGCTATCGATAATGGGTGAGTGC---------------------------------------------------CGGGTGTTAGGGAGC-TTTTCCT--------------------------------TATCGCCATGCCCCTGAGAACCAACC---------AATTGT-GCAGATAACA---------------------------------------------CCCGGAATG-GGAAT--GTGGTGCTATAAGATCGA-----GT-------TT--T-TTTTGAATTCCTGAGCGCCCAGCA-----AGTG-CAATCTGCGTCAGC-CGAGCGCACTGATAGCCCAGA--GATA-----------------------
droYak3 3R:11317562-11317803 - AAGCA-------GCAACATGACAGCACTGGGATTAATTCTGCTATCGATGATGGGTGAGTGC---------------------------------------------------CGGGTGTTAGGGAGTCTTTTCCT--------------------------------TATCGCCAAGGTCCTGAGAAC--ACT---------AAATGT-GCAGATAGCA---------------------------------------------GCCGGAATGCGGAAT--GTGGGGCTATTCGATCGATTC--GTTTTTT-TTT--T-TTTTGAATTCCTGAGCGCCAAGCA-----ACTG-CAATCTGCGCCAGC-TGAG--CACTGATAGCCCAGA--GATAA----TATAT-------GCAGCG
droEre2 scaffold_4770:14337106-14337322 + CA----------GCAACATGACAGCACTGGGATTAGTTCTGCTATCGATGATGGGTGAGTGC----------------------------------------------------GGGTGTTAGGGAGTCTTTTCCT--------------------------------TATCGCCATGCCCCTGAAAAC--ACT---------AAATGT-TCAGATAGTA---------------------------------------------CCCGGAATTCGGAAT--GTGGGGCTATTAGAATGG--------------TT--T-CTTTGAATTCCTGAGCGCCAAGCA-----ACTG-CAATCTGCGTCAGC-TGAG--CACTGATAGCCCAGA--GATAA----T-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAGCAGAG----ACAGCATGACAGCACTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGTGTAAGCGAGACAGCAGTGAGTGGGTGTGAGATTGCGAGTGGGAGTGGAGATCGGGAGACAGTGAGT---GGTCT--------------------------------TATCG-CATGCCCCTGAACAT---C-GCCATAAAACAT-GG------T-C-GAGA-GGGGTCTTA---------------------------------------------------------------------------------------TCGAGGCATTCTGCACATCTATCA---CAGCTG-CAATCAGCGTCAGT-CGAG--CAGGAATATCGTA-------------TATGA-------ACATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................CAGCACTGGGATTAGTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.......................GCACTGGGATTAGTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
................................TTAGTTCTGCTATCAATGATGGGC...........................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................ACTGGGATTAGTTCTGCTATC.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.AGCAGAG----ACAGCATGACAGCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
................................TTAGTTCTGCTATCAATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...................GACAGCACTGGGATTAGTTCTGCTAT......................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
...............................................................................................GCGAGTGGGAGTGGAGACA.................................................................................................................................................................................................................................................................................................................19100.2020200000000
droPer2
AAGCAGAG----ACAGCATGACAGCACTGGGATTAGTTTTGCTATCAATGATGGGTAAGTGTGTAAGCGAGACAGCAGTGAGTGGGAGTGAGATTGCGAGTGGGAGTGGAGATCGGGAGACAGTGAGT---GGTCT--------------------------------TATCG-CATGCCCCTGAACAT---C-GCCATAAAACAT-GG------T-C-GAGA-GGGGTCTTA---------------------------------------------------------------------------------------TCGAGGCATTCTGCACATCTATCA---CAGCTG-CAATCAGCGTCAGT-CGAG--CAGGAATATCGTA-------------TATGT-------ACATCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................GATTAGTTTTGCTATCAATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2713.003300000
.....................................TTTGCTATCAATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2012.002200000
......................................................................................................................................CT--------------------------------TATCG-CATGCCCCTGAACAT---C-GCC..............................................................................................................................................................................................................................2611.001100000
..............................GATTAGTTTTGCTATCAATGATGGGCC..........................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
-----------------ATGACAGCAATGGGATTACTTTTGCTATCAATGATGGGTAAGTGA---------------------------------------------------GAGCTCACAGACAGCCCAGTCCT--------------------------------GCCCACCAACACCCATA--TCTAACC---------AATAAG-CCA------------------TATCAGTGCGACCCTGAAAAAAAAAACGATAAAAACAAAAATA-GGCAACAGTTAGCTTGTTAGA--GAAACGACC-------TTCTTATCAGCGCATTCTGCGCGCCTGTCA-----CCGG-CAATTAAATTCAGT-C-CG--CCCTGAAAG-----A--GATAA----T------------TATCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................CTATCAATGATGGGTAAGTG......................................................................................................................................................................................................................................................................................................................................................................2011.00100001
..............................................................................................................................GCCCAGTCCT--------------------------------GCCCACCAACACCC.............................................................................................................................................................................................................................................2411.00101000
.........................................................................................................................................................................................................................................................................................................................................TCTGCGCGCCTGTCA-----CCGG-.................................................................1911.00110000
...........................................ATCAATGATGGGTAAGTGA---------------------------------------------------GAG...............................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................................................................................................................................................................................CATTCTGCGCGCCTGTCA-----CCGG-.................................................................2211.00110000
.........................................................................................................................................................................................................................................................................................AGTTAGCTTGTTAGA--GAAA.....................................................................................................................1911.00100100
................................................................................................................................................................................................................................................................................................................ACC-------TTCTTATCAGCGCATTCTG......................................................................................2211.00101000
droVir3
------------------TGACAGCACTTGGATTACTTTTGTTATCTATGATGGGTAAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................TGACAGCACTTGGATTACTTTT...........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.....................................TTTGTTATCTATGATGGGT...........................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
G-----------CCAGTATGACAGCACTTGGATTACTTTTGCTATCTATGATGGGTAAGTGT---------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTGCA---------AGTATGACAGCACTTGGATTACTTTTGCTATCAATGATGGGTAAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ATATCAAG----ACATCATGACTGCCCTGGGATTAGTTTTGCTATCAATGATGGGTAAGTTA-------------------------------TTT-----------------CGAGTGCCGGTGAATA--CTTGTTATCGGAGGAGGGCGGCGGAATGCTGA------------TAGCTCCTGCTC------------------------------------ACCTGCCTTATCG-AGGG--------------------------------------------GGG------------------C-------TG--C-TCTTTGGTTTCTGGGCGCCCATCC---G-CTCGTCAATC-GCGTCAGC-TGGG--CCCTGATAATCCATA------------------------TATTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............CATCATGACTGCCCTGGGATT.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................................................................GG------------------C-------TG--C-TCTTTGGTTTCTGGG....................................................................................2111.001100000
................................................................................................................................................................TGA------------TAGCTCCTGCTC------------------------------------ACCTGC..............................................................................................................................................................................................2111.001100000
droBip1
AGA----------CATCATGACAGCACTGGGATTAGTTTTGCTATCAATGATGGGTAAGTTA-------------------------------TTTCGAGGG---C-------CGGTTATC-GGGAGT----------------------GGA-GAATGCTGATAGCTTCTC---------------------------------------------------ACCTGCCTTATCGGCAGG--------------------------------------------GGG------------------C-------TG--T-TCTTTAATTTCTGGGCGCCCATTC---G-CTTGTCAATC-GCGTCAGC-TGGG--CCCTGATAATATTAT--A----------AGT--ATAATATAATASizeHit CountTotal NormTotal
No Reads
droKik1
AAG----------CAACATGACAGCATTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGT---------------------------------------------------CGTGTGCTCGAGAGGC-TTTCCT--------------------------------TATCGAGT-----------CT--GCCA--------AATTGGAGAAGATATCA--CACCTG------------------------------------------------------------------------------C-------TC--C-TCTACAATTTCTGCTCGCCCGTCCGTCCACCTG-CAATCAGTGTCCGC-TGAG--CCCTGACAGCTGTTA--TATA-----CATAT-------TTAATASizeHit CountTotal NormTotal
No Reads
droFic1
CAACATA-----ACGAAATGACGGCACTGGGATTAGTTTTGCTAACAATGATGGGTAAGTTC---------------------------------------------------AGGGTGTTGGGAAGAC--TTTCT--------------------------------TATCGCATTGCCCCTGAAATT--GTA---------AACCCA-GGAGATATTA--A---AGTCTTATCA-GGGG--------------------------------------A---------------ATCGG-----TTTGAT-TTTA--A-AATAAAATTTCTGGGCGCCCATCA-----ACTG-CAATCAGCGTCAGT-TGAG--CACTGATAGCCACACACAGTAATGTATATAT-------GCAACGSizeHit CountTotal NormTotal
No Reads
droEle1
AAACA-------GCAACATGACAGCACTGGGATTAGTTTTGCTATCAATGATGGGTAAGTGG---------------------------------------------------CGGGTGTTAGAGAGCC--TTTGT--------------------------------TATCGACATGCCCCTGGGAAT--GTG---------AATCGG-ATAGATAGCA--A-G-CCTCTTATCG-GGGG--------------------------------------T--ATGGG---------TCGG------T---T-CTTT--T-TTTTTAACTTCTGCGCTCCCAACA-----CCTG-CAATCAGCGTCAGC-TGAG--CACTGATAACCCCCC----------------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
-------------CAACATGACAGCACTGGGATTAGTTCTGCTATCAATGATGGGTAAGTGG---------------------------------------------------CGAGTGTTAGAGAGGC--CTTCT--------------------------------TATCGACAAGCCCCTGGGAAT--GTG---------CCTCTG-ATAGATAGCA--C--ACGCCTTATCG-CGG--------------------------------------------------------------------------------TTTTTAATTTCTGCGCGCCCATCA-----CCTG-CAATCAGCGTCAGC-TGAG--CACTGATAGCCTGAC--ACTAA----TATAT-------GCATCGSizeHit CountTotal NormTotal
No Reads
droBia1
AAACAACA----GCAACATGACGGCACTGGGATTAGTTTTGCTATCCATGATGGGTAAGTGG---------------------------------------------------CGGGCTTTTGGGGCT-TGCTTCT--------------------------------TATCGACATGCCCCTGAGAGC--ACCAA-------AATTGA-CTAGATAC-ACGA-GCCGCCTTATCG-CAGT-------------------------------------------GGTGATTT----TCAG------T---T-CTTT--T-TGCTGGACTTCTGGGCGCCCATCA-----AGTG-CAATCAGCGTCAGC-TGAT----------------------AA----TATATGTTCCGTATAATGSizeHit CountTotal NormTotal
No Reads
droTak1
-------------CAACATGACAGCACTGGGATTAGTTTTGCTATCCATGATGGGTAAGTGC---------------------------------------------------CGGGTGTTAGAGAGTC--TTCCT--------------------------------TATCGACATGCCCCTGAGAGT--ACG-ATATACGAAATTGG-GGAGATAGCG--A-ACCGCCTTATCG-CAGT--------------------------------------A--ATGGT---------TAGG------T--TTT-TAT--T-TTTTGAATTCCTGAGCGCCCATCA-----ACTG-CAATCAGCGTCAGC-TGAG--CAGTGATAGCCCCAC--GATAA----TA---------------TSizeHit CountTotal NormTotal
No Reads
droEug1
AAGCAAAG---AGCAACATGACAGCTTTGGGATTAGTTCTGCTATCGATGATGGGTAAGTGC---------------------------------------------------CGGGTGTTAGAGTC--TTTTTCT--------------------------------TATCAACTTGCCCCTGAGAAT--ATA---------AATTGG-GGAGATAGTACC-ACCGGTCTTATCG-CA-------------------------------------------------------------------TTTTTTGTTT--T-TGTTAAATTCCTGAGCGCCCATCA-----CCTG-TAATCAACGTCAGCCTGAG--CAGTGATAACCTCGC--A-------------------------GSizeHit CountTotal NormTotal
No Reads
dm3
CAGCTAAAAGCAGCAACATGACAGCACTGGGATTAGTTCTGCTATCGATGATGGGTAAGTGC---------------------------------------------------CGGGTGTTAGGGTGC-TTTTCCT--------------------------------TATCGCCATGCCCCTGAGAACTTACC---------AATTGT-GCAGATAGCA---------------------------------------------CCCGGTATG-GGAAT--GTGGGGCTATAAGATCGG-----GTT-----TTT--T-TTTTGAATTCCTGAGCGCCCAGCA-----AGTG-CAATCTGCGTCAGC-TGAGCGCACTGATAGCCCAGA--GATAA----T----------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................CT--------------------------------TATCGCCATGCCCCTGAG.........................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTACC---------AATTGT-GCAGATAGCA---------------------------------------------A.........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................TAGCA---------------------------------------------CCCGGTATG-GGAAT--GTG......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACATGACAGCACTGGGATTAGTTCT...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................TAAGTGC---------------------------------------------------CGGGTGTTAGGGTG....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATGGGTAAGTGC---------------------------------------------------CGGGTG............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TGC---------------------------------------------------CGGGTGTTAGGGTGC-..................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................TTTCCT--------------------------------TATCGCCATGCCCCTG...........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCACTGGGATTAGTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CAGC-TGAGCGCACTGATAGCCC................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................GC-TTTTCCT--------------------------------TATCGCCATGCC...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGC-TTTTCCT--------------------------------TATCGCCATGCCCC.............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTGGGATTAGTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................T-GCAGATAGCA---------------------------------------------CCCGGTATG-G...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTGT-GCAGATAGCA---------------------------------------------CCCGGTATG-GGAA............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................GCA---------------------------------------------CCCGGTATG-GGAAT--GTGG.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAGTTCTGCTATCGATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGTTCTGCTATCGATGATG..............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CAGCACTGGGATTAGTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ATGATGGGTAAGTGC---------------------------------------------------CGGGTG............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTCTGCTATCGATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TAAGTGC---------------------------------------------------CGGGTGTTAGGGT.....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....TAAAAGCAGCAACATGACAGCACTGGGA...................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTTCCT--------------------------------TATCGCCATGCCCCT............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGCAACATGACAGCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TCCTGAGCGCCCAGCA-----AGTG-CAA..............................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GAATTCCTGAGCGCCCAGCA-----AGTG-CAAT.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T--GTGGGGCTATAAGATCGG-----GTT-----TT........................................................................................................2411.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AAGTGC---------------------------------------------------CGGGTGTTAGGGTGC-..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GAAT--GTGGGGCTATAAGATCGG-----G.................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
-------------CAACATGACAGCACTGGGATTAGTTCTGCTATCGATGATGGGTGAGTGC---------------------------------------------------CGGGTGTTAGGGAGC-TTTTCCT--------------------------------TATCGCCATGCCCCTGGGAACCAACC---------AATTGT-GCAGATAGCA---------------------------------------------CCCGGAATG-GGAAT--GTGGTGCTATAAGATCGA-----GTTTTTT-TTT--T-TTTTGAATTCCTGAGCGCCCAGCA-----AGTG-CAATCTGCGTCAGC-TGAGCGCACTGATAGCCCAGA--GATAA----T-----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................TT-TTT--T-TTTTGAATTCCTGAGC...................................................................................2211.00101000000000000000
..............................................GATGATGGGTGAGTG......................................................................................................................................................................................................................................................................................................................................................................15200.15300000000003000000
droSec2
AAGCA-------GCAACATGACAGCACTGGGATTAGTTCTGCTATCGATAATGGGTGAGTGC---------------------------------------------------CGGGTGTTAGGGAGC-TTTTCCT--------------------------------TATCGCCATGCCCCTGAGAACCAACC---------AATTGT-GCAGATAACA---------------------------------------------CCCGGAATG-GGAAT--GTGGTGCTATAAGATCGA-----GT-------TT--T-TTTTGAATTCCTGAGCGCCCAGCA-----AGTG-CAATCTGCGTCAGC-CGAGCGCACTGATAGCCCAGA--GATA-----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................A-----AGTG-CAATCTGCGTCAGC-CG................................................2112.0020200
...............ACATGACAGCACTGGGATTAGTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.................................................................................................................................................................................................................................................................................................................GT-------TT--T-TTTTGAATTCCTGAGC...................................................................................2111.0010010
..............AACATGACAGCACTGGGATT.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......................GCACTGGGATTAGTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............................ATTAGTTCTGCTATCGATAATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.........................ACTGGGATTAGTTCTGCTATCG....................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................................................................................................................................................................................AGATAACA---------------------------------------------CCCGGAATG-GGAAT--GTGGT....................................................................................................................................2711.0010010
.....................CAGCACTGGGATTAGTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................................AGTTCTGCTATCGATAATGGG............................................................................................................................................................................................................................................................................................................................................................................2111.0010010
........................CACTGGGATTAGTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................AGTTCTGCTATCGATAATGGGTGA.........................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.......................GCACTGGGATTAGTTCTGCTATC.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
............GCAACATGACAGCACTGGG....................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.....................CAGCACTGGGATTAGTTC............................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................................................................................................................TTCCT--------------------------------TATCGCCATGCCCCTGAGA........................................................................................................................................................................................................................................2411.0010010
....A-------GCAACATGACAGCACTGGGA...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
droYak3
AAGCA-------GCAACATGACAGCACTGGGATTAATTCTGCTATCGATGATGGGTGAGTGC---------------------------------------------------CGGGTGTTAGGGAGTCTTTTCCT--------------------------------TATCGCCAAGGTCCTGAGAAC--ACT---------AAATGT-GCAGATAGCA---------------------------------------------GCCGGAATGCGGAAT--GTGGGGCTATTCGATCGATTC--GTTTTTT-TTT--T-TTTTGAATTCCTGAGCGCCAAGCA-----ACTG-CAATCTGCGCCAGC-TGAG--CACTGATAGCCCAGA--GATAA----TATAT-------GCAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................GATTAATTCTGCTATCGATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............AACATGACAGCACTGGGATT.................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................................ATCGATGATGGGTGAGTGC---------------------------------------------------CGGGTGTTA.........................................................................................................................................................................................................................................................................................................2811.00100000010000
......................................................GTGAGTGC---------------------------------------------------CGGGTGTTAGGGAG....................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................ATAGCA---------------------------------------------GCCGGAATGCGGAAT--.........................................................................................................................................2111.00110000000000
................................................................................................................................................................................................................................................................................................................................................GCCAAGCA-----ACTG-CAATCTGCGCCA.....................................................2411.00101000000000
...................GACAGCACTGGGATTAATTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................TT-TTT--T-TTTTGAATTCCTGAGC...................................................................................2211.00110000000000
........................CACTGGGATTAATTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
......................AGCACTGGGATTAATTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...............................ATTAATTCTGCTATCGATGATGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................GCACTGGGATTAATTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEre2
CA----------GCAACATGACAGCACTGGGATTAGTTCTGCTATCGATGATGGGTGAGTGC----------------------------------------------------GGGTGTTAGGGAGTCTTTTCCT--------------------------------TATCGCCATGCCCCTGAAAAC--ACT---------AAATGT-TCAGATAGTA---------------------------------------------CCCGGAATTCGGAAT--GTGGGGCTATTAGAATGG--------------TT--T-CTTTGAATTCCTGAGCGCCAAGCA-----ACTG-CAATCTGCGTCAGC-TGAG--CACTGATAGCCCAGA--GATAA----T-----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.A----------GCAACATGACAGCACTGGGATTA................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...................GACAGCACTGGGATTAGTT.............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................AGCACTGGGATTAGTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........................ACTGGGATTAGTTCTGCTAT......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
........................CACTGGGATTAGTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000
......................................................GTGAGTGC----------------------------------------------------GGGTGTTAGGGA.....................................................................................................................................................................................................................................................................................................2011.0010000100
.................ATGACAGCACTGGGATTAGTTC............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.......................................................TGAGTGC----------------------------------------------------GGGTGTTAGGG......................................................................................................................................................................................................................................................................................................1811.0011000000
.......................GCACTGGGATTAGTTCTGCTATCGAT..................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..............AACATGACAGCACTGGGATTAGTTC............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..............AACATGACAGCACTGGGATTAGC..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
...............ACATGACAGCACTGGGATTAGTT.............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..............AACATGACAGCACTGGGATTA................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................GTTCTGCTATCGATGATGGGCT..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................ATGACAGCACTGGGATTAGTT.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
............GCAACATGACAGCACTGGGATTAGTTC............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.A----------GCAACATGACAGCACTGGGAT..................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
............................GGGATTAGTTCTGCTATCGATGAT...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000100

Generated: 05/17/2015 at 11:17 PM