dps_784

exon [Dpse\GA27485:11]; CDS [Dpse\GA27485-cds]; CDS [Dpse\GA27485-cds]; exon [Dpse\GA27485:12]; intron [Dpse\GA27485-in]

Name	Class	Family	Strand
Hopers2	DNA	hAT-hobo	+
DNAREP1_DYak	RC	Helitron	-

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAGTTGATGAGATACTCAAGGATATCGATAGGAATTATGATTACCTAAAGGTAAGTGAATGAATCAAATTAATCTGCTAATGTAAATTCACTTGATTGAAATGGACAGAAATGGCTCAATCGACTCGGCTATTGATGCTGATCGTAGGAGGGGTCGGATACGATTCCTTTTGGGTTTACAACAAATCTAATATACTCTTCGATTATTTTTTTCAGGACTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC ************************************************************************************************************....(((...(((.(((((.......))))))))...)))...**************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902012 CNS imaginal disc	V112 male body	GSM444067 head	SRR902010 ovaries	M059 embryo	GSM343916 embryo
............................................................GAATCAAACTCATCTGTTAATG.......................................................................................................................................................................................	22	3	1	2.00	2	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGAGAATGTTGTGCCCGCT........	19	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................ATGCTGATCGTAGGAGGGG................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
............................................CTAAAAGTAAGAGAATGAAT.........................................................................................................................................................................................................	20	2	2	0.50	1	0	0	1	0	0	0	0
.......................................................................................................................................TGCTGAACGTAGCGGGGGTC..............................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0	0
.................................TTTATGATTACCTAAAGCTCA...................................................................................................................................................................................................................	21	3	5	0.20	1	1	0	0	0	0	0	0
...............................................................................................................TGGCTCAATCGACTCGGCTATTG...................................................................................................................................	23	0	20	0.15	3	0	0	0	0	3	0	0
..............................................................................................................................................CGTAAGAGGTGTGGGATAC........................................................................................................	19	3	7	0.14	1	0	0	1	0	0	0	0
......................................................................................TTGACTTGGTTGAAATGGA................................................................................................................................................................	19	2	9	0.11	1	0	0	1	0	0	0	0
.....................................................................................................................AATCGACTCGGCTATTGATGC...............................................................................................................................	21	0	20	0.10	2	0	0	0	2	0	0	0
..............................................................ATCAAACTCATCTGTTAATG.......................................................................................................................................................................................	20	3	10	0.10	1	1	0	0	0	0	0	0
........................................................................................................................................................GTCGGATATGCTTCCTTTTGG............................................................................................	21	2	19	0.05	1	1	0	0	0	0	0	0
.......................................................................................TGACTTGGTTGAAATGGA................................................................................................................................................................	18	2	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................TGGCTCAATCGACTCGGCTA......................................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................TTTTAAGGACTATCATGGT......................................	19	3	20	0.05	1	0	0	0	0	0	0	1
..............................................................................................................ATGGCTCAATCGACTCGGCT.......................................................................................................................................	20	0	20	0.05	1	0	0	1	0	0	0	0
......................................................................................................................ATCGACTCGGCTATTGATGCTGA............................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0	0

GTCAACTACTCTATGAGTTCCTATAGCTATCCTTAATACTAATGGATTTCCATTCACTTACTTAGTTTAATTAGACGATTACATTTAAGTGAACTAACTTTACCTGTCTTTACCGAGTTAGCTGAGCCGATAACTACGACTAGCATCCTCCCCAGCCTATGCTAAGGAAAACCCAAATGTTGTTTAGATTATATGAGAAGCTAATAAAAAAAGTCCTGATAATACGACCGAAACGGTATCTCTTACAACACGGGCGAATGTATCG **************************************************************************************************************....(((...(((.(((((.......))))))))...)))...************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	GSM444067 head
.......................................................................................................................................................................................................GCTAATGAGAAAAGTCCTAAT.............................................	21	3	3	0.33	1	1	0
..........................................................................................................TCTTTACCGAGTTAGCTGAGC..........................................................................................................................................	21	0	5	0.20	1	1	0
.............................................................................................................TTACCGAGTTAGCTGAGCCGATA.....................................................................................................................................	23	0	5	0.20	1	1	0
.....................................................................................................................TTAGCTGAGCCGATAACTACGAC.............................................................................................................................	23	0	20	0.15	3	3	0
.............................................................................................................TTACCGAGTTAGCTGAGCTGA.......................................................................................................................................	21	1	11	0.09	1	1	0
..........................................................................................................................TGAGCCGATAACTACGACTAG..........................................................................................................................	21	0	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
dp5	2:25398106-25398370 +	dps_784	CAGTTGATGAGATACTCAAGGATATCGATAGGAATTATGATTACCTAAAGGTAAGTGAA-TGA---------A--------------------------------TCAAATTAATCTGCTAA-------TGTAAATTCACTTG---ATTGAA-----ATGGACAGAA--ATGGCTCAATCGACTCGGCTATTGATGCT------------------GATCGTAGGA-------------GG----------GGTCGGATACGATTCCTTTTG-----------------GGTTTACAACAAATCTAATATACTCT-------TC---------------------GATTATTTTTTTCAGGACTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC
droPer2	scaffold_6:726899-727173 +	dpe_1873	CAGTTGATGAGATACTCAAGGATATCGATAGGAATTATGATTACCTAAAGGTAAGTGAA-TGA---------A--------------------------------TCAAATTAATCTGCAGA-------TGTAAATTCACTTG---ATTGAA-----ATGGACAGAA--ATGGCTCAATCGACTCGGCTATTGATGCT------------------GATCGTAGGG-------------AGGGTCGGAATGGGGCGGAAACGATTCCTTGTG-----------------GGTTTACAACAAATCTAATATAATCT-------TC---------------------GATTATTTTGTTCAGGATTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC
droWil2	scf2_1100000004943:15730482-15730646 +		CTGTTGATGAGATACTCAAGGATATTGATCGAAACTACGACTATCTGAAGGTAAGTTCT-ATTAATAATCTAAACGAA--------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------GTTTTTACTAA-----TTTAATCT-------TA-------------ATT-GC-------TATTACACAGGATTATTATGCCGGATTTGCCATTGAGAATGTTGTGCCCGCTTATATAGC
droVir3	scaffold_12936:519844-520062 +		AGGATATCGA------------------TATCGATTTTTATC----------GATTTCT-TGG---------AAACGGAGTAAATTATCGATTATC------------------------------------GAAAATAAACGGACATGGAC-----ATGGACGGAC--ATGGCTAGATCGACTCGGCTATTGATGCT------------------GATCAAGAATATATATACTTTATGG----------GGTCGGAGATGTTTCCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATACAATATACCCT-------TA---------------------TACCC-------------------------------------------------ATTTT-----T
droMoj3	scaffold_6540:20784212-20784292 -		T-------------------------GATATAATCCACGCGCATCTCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGGATTACTATGCAGGCTTTGCCATAGAGAATGTTGTGCCTGCTTATATAGC
droGri2	scaffold_14906:434408-434568 -		CAGTTGACGAAATACTTAAGGATATTGACAGGAACTATGATTATCTCAAGGTAAAATTTGTGA---------AATG-G--------------------------------T----CT--TA--------------------------------------------------------------TTATCTA-----------------------------------------------------------------------------------------------------------------------------A-ATTC---CCAACTCACAAACACT----------CTCGTTAAAGGATTACTATGCTGGCTTTGCTATAGAGAACGTTGTACCCGCCTACATAGC
droAna3	scaffold_13335:3064978-3065097 -		TTAATACAGA----------------------------------------------------------------------------------------------------------------------------------------------------CAGACGGAA--ATGGCTATATTGACTCGGCTGTTGATGCT------------------GATCAAGAGTATATATG------GG----------GGTCGGAATTGATTCCTCTTTGCTGT-GTATAC-------ATACACACGAATACAATATA--------------------------------------------------------------------------------------------------C
droBip1	scf7180000396714:709133-709290 +		CTGTTGATGAGATACTCAAGGATATAGACAGGAACTACGACTACTTGAAGGTTGTGC----TA---------AATATT--------------------------------A-----------TTTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------TTAAACATGAT--AAAAAT-CAGGATT-TTTCTTTCAGGATTACTATGCTGGCTTTGCCATTGAGAACGTGGTGCCGGCCTATATAGC
droKik1	scf7180000302461:401195-401356 +		CGGTCGATGAGATCCTTAAGGACATTGACAGGAACTACGATTATCTCAAGGTGAAGCTG-TGA---------AAGGAA--------------------------------A------------------------G---------------------------------CTTTTTAAGTAAGATTATCTAA------------------------------------------------------------------------------------------------------------TAA-----TTTA------------------------------AT-----T-GCATTTCCAGGACTACTATGCTGGCTTTGCCATAGAAAATGTGGTGCCTGCCTATATAGC
droFic1	scf7180000453488:95936-95991 +		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGGATTACTATGCTGGCTTTGCCATTGAAAACGTTGTGCCCGCCTACATAGC
droEle1	scf7180000491080:1960094-1960253 +		CCGTCGATGAAATTCTAAAGGATATCGACAGGAACTACGATTATCTAAAGGTGATTTCC-TTA---------AACCTT--------------------------------A-----------CTCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TGGT---TCTTTTAAAACATATTTT----A---CGGTTTTTAGGATTATTATGCCGGCTTTGCCATAGAAAACGTGGTGCCCGCCTACATAGC
droRho1	scf7180000767930:65062-65221 -		CCGTTGATGAAATACTAAAGGATATCGACAGGAACTACGATTATCTAAAGGTGGTTTCT-TTA---------AAGTTA--------------------------------A-----------CTTCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----ATTATTTTACCAAATATTTAT-------TGTATTTTAGGATTATTATGCCGGCTTTGCCATTGAAAACGTGGTGCCCGCCTACATAGC
droBia1	scf7180000302411:522122-522345 +		AAAAA----------------------------------------------TAAATAAA-TGA---------G-------------------AATCTGGAAAAAATCA---------------------AGTGAATACAATTGAATA-TGAG-----ACAGACGGACAGACGGCTAAATCGACTCGGCTACTGATCCT------------------GAGCAAGAATATATATACTTTATGG----------GGTCGGAAACGCTTCCTTTAACCTGTTACATAC-------TTTCTGACGAATCTAGTATACCCT-------TT---------------------TA---CTTTACGAATAACGAGTATACAAATTCTACAATGACAACTGT------------------
droTak1	scf7180000413281:44526-44686 -		CCGTCGATGAGATTCTAAAGGATATCGACAGGAACTACGATTATCTCAAGGTGGTTTCT-TTA---------AAATAG--------------------------------A-----------ATCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ATCC---TTATTTAACTTATATTT-T--TG---CCTTTTTTAGGATTACTATGCCGGCTTTGCCATAGAGAACGTTGTCCCCGCCTACATAGC
droEug1	scf7180000409797:1371220-1371376 -		CAGTCGATGAGATTCTCAAGGATATCGACAGGAACTACGATTATCTGAAGGTGGGTTCT-TTA---------AATCTC--------------------------------A-----------ATCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TGTATTCTGATTAATTAT-GT-------TTTTGTTTAGGATTACTATGCTGGCTTTGCCATTGAGAATGTGGTTCCCGCTTACATAGC
dm3	chr3R:7720721-7720880 -		CAGTTGATGAGATACTCAAGGATATCGACAGGAACTACGATTATCTAAAGGTAAATCCT-TTA---------AACTTC--------------------------------C-----------TTTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATG---TATTTCAACAAACATT-GC-------TTTCTTTCAGGACTACTACGCTGGTTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC
droSim2	node_90918:16029-16173 +		GAT-------------------------------------------------------------------------------------------------------------------------------------------------CGAG-----ACAGAAGGAC--ATGGCTAGATCGACTCGGCTATTGATCCT------------------GATCAA------------------T----------GGTCGGAAACGCTTCCTTCTGCCAGTAATACAC-------TTTTCAACAAATCTAGTATACCCT-------TA---------------------TACTCTACGAGTAACGGTTATTATAATGGCTTT--------------------------------
droSec2	scaffold_0:14248972-14249131 +		CAGTTGATGAGATTCTCAAGGATATCGACAGAAACTACGATTATCTAAAGGTAATTCAT-TTA---------AACTTC--------------------------------G-----------TTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATG---TATTTTAACTAACATT-GC-------TTTATTTCAGGATTACTACGCTGGTTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC
droYak3	3R:16699515-16699785 +	dya_1058	CAGTTGATGAGATTCTTAAAGATATCGACAGGAACTACGATTATCTTAAGGTAATTTCT-TTA---------AACTTA--------------------------------ATGTTCT--TAA-------TGTTATTATACCCG---TTACTCGTAGAGTAAAAGGGT--ATAG-TAGATTCGTTCTATTCGTCACTATGCTTAGTGACGGGTATCAGATAGTCGGG-------------AGTCT------------------------------------------------------CGACTATAGCATACTCT-------CTTATTTTAACTAACATT-AA-------TTTATTTTAGGACTACTATGCTGGCTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC
droEre2	scaffold_4770:13899956-13900118 +		CAGTTGATGAGATTCTCAAGGATATCGACAGAAACTACGATTATCTAAAGGTAATTCCT-TAA---------AACTTG--------------------------------A-----------TTTCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTTATTTTTACTGACATT-GT-------TTTATTTCAGGACTACTATGCTGGCTTAGCCATAGAGAACGTTGTGCCCGCCTACATAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

CAGTTGATGAGATACTCAAGGATATCGATAGGAATTATGATTACCTAAAGGTAAGTGAA-TGA---------A--------------------------------TCAAATTAATCTGCTAA-------TGTAAATTCACTTG---ATTGAA-----ATGGACAGAA--ATGGCTCAATCGACTCGGCTATTGATGCT------------------GATCGTAGGA-------------GG----------GGTCGGATACGATTCCTTTTG-----------------GGTTTACAACAAATCTAATATACTCT-------TC---------------------GATTATTTTTTTCAGGACTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................AGAGAATGTTGTGCCCGCT........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGCT------------------GATCGTAGGA-------------GG----------GG.............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................TGGCTCAATCGACTCGGCTATTG.........................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
................................................................................................................................................................................AATCGACTCGGCTATTGATGC.....................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................TGGCTCAATCGACTCGGCTA............................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................ATGGCTCAATCGACTCGGCT.............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................ATCGACTCGGCTATTGATGCT------------------GA................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGTTGATGAGATACTCAAGGATATCGATAGGAATTATGATTACCTAAAGGTAAGTGAA-TGA---------A--------------------------------TCAAATTAATCTGCAGA-------TGTAAATTCACTTG---ATTGAA-----ATGGACAGAA--ATGGCTCAATCGACTCGGCTATTGATGCT------------------GATCGTAGGG-------------AGGGTCGGAATGGGGCGGAAACGATTCCTTGTG-----------------GGTTTACAACAAATCTAATATAATCT-------TC---------------------GATTATTTTGTTCAGGATTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................CTCAATCGACTCGGCTATTG.........................................................................................................................................................................................................................	20	20	0.45	9	0	9	0	0	0	0
.................................................................................................................................................................................ATCGACTCGGCTATTGATGCT------------------..................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	4

droWil2

CTGTTGATGAGATACTCAAGGATATTGATCGAAACTACGACTATCTGAAGGTAAGTTCT-ATTAATAATCTAAACGAA--------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------GTTTTTACTAA-----TTTAATCT-------TA-------------ATT-GC-------TATTACACAGGATTATTATGCCGGATTTGCCATTGAGAATGTTGTGCCCGCTTATATAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AGGATATCGA------------------TATCGATTTTTATC----------GATTTCT-TGG---------AAACGGAGTAAATTATCGATTATC------------------------------------GAAAATAAACGGACATGGAC-----ATGGACGGAC--ATGGCTAGATCGACTCGGCTATTGATGCT------------------GATCAAGAATATATATACTTTATGG----------GGTCGGAGATGTTTCCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATACAATATACCCT-------TA---------------------TACCC-------------------------------------------------ATTTT-----T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................CAAGAATATATATACTTTATGG----------G..............................................................................................................................................................	23	20	2.65	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAAT...........................................................................................................	22	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	4	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCAAGAATATATATACTTTATGG----------GG.............................................................................................................................................................	25	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATA..........................................................................................................	23	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	6	0	3	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAA.......................................................................................................	26	20	0.85	17	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATAC.........................................................................................................	24	20	0.50	10	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAA.............................................................................................................	20	20	0.40	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGG---------AAACGGAGTAAATTATCGATTAT...........................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AAGAATATATATACTTTATGG----------GGTC...........................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CAAGAATATATATACTTTATGG----------GGTCG..........................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGG---------AAACGGAGTAAATTATCGATT.............................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCAC...............................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AAACGGAGTAAATTATCGATT.............................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TACATACATTTGGATTTCGCACAAAT...........................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAAT......................................................................................................	27	20	0.10	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AATATATATACTTTATGG----------GGT............................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TC----------GATTTCT-TGG---------AAACGGAGT.........................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TGTTACATACATTTGGATTTCGCACA..............................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CTGTTACATACATTTGGATTTCGC.................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTATC----------GATTTCT-TGG---------AAACGGAGT.........................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGAATATATATACTTTATGG----------GGTCGG.........................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AACGGAGTAAATTATCGATTATC------------------------------------G.....................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGCT------------------GATCAAGAATATATATACTTT.............................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GATCAAGAATATATATACTTTATGG----------G..............................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTTTATC----------GATTTCT-TGG---------AAAC..............................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AACGGAGTAAATTATCGATTA............................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACA........................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AAACGGAGTAAATTATCGATTA............................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGG---------AAACGGAGTAAATTATCGATTATC------------------------------------......................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TATATATACTTTATGG----------GGTCGGAGA......................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TATATACTTTATGG----------GGTCGGA........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TACATACATTTGGATTTCGCACAA.............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................T-TGG---------AAACGGAGTAAATTATCGATT.............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATACATTTGGATTTCGCACAAATACA........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TGTTACATACATTTGGATTTCGC.................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AAACGGAGTAAATTATCGATTATC------------------------------------......................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ATACTTTATGG----------GGTCGGAGATG....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTATGG----------GGTCGGAGATGTTTCCTTC............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TCTGCCTGTTACATACATTTG.........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ACGGAC--ATGGCTAGATCGACTCG................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CATACATTTGGATTTCGCACAAATACAA.......................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTATGG----------GGTCGGAGATGTTTC................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................TTTATGG----------GGTCGGAGATGTTTCCT..............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GATCAAGAATATATATACTTTATGG----------GG.............................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGACTCGGCTATTGATGCT------------------G.................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CT-TGG---------AAACGGAGTAAATTATCGATT.............................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAATA.....................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATACATTTGGATTTCGCACAAATACAA.......................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................T------------------GATCAAGAATATATATACTTTATGG----------...............................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTATGG----------GGTCGGAGATGTTTCCTT.............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTGATGCT------------------GATCAAGAATATATATACTT..............................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TTATC----------GATTTCT-TGG---------AAACGGAGT.........................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGG---------AAACGGAGTAAATTATCGA...............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................C--ATGGCTAGATCGACTCGGCT.............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATG......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CAAGAATATATATACTTTATGG----------GGTCGG.........................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGG----------GGTCGGAGATGTTTCCTTCTGCC........................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTAGATCGACTCGGCTATTGATGCT------------------..................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGCTATTGATGCT------------------GATCAAGAAT........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GATCGACTCGGCTATTGATGC.....................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................TTTGGATTTCGCACAAATA..........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATACA.............................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TATCGA------------------TATCGATTTTTATC----------GATT..................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ACATTTGGATTTCGCACAAATACAA.......................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGCT------------------GATCAAGAATATATATACTTTA............................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTTGGATTTCGCACAAATACAATA.....................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTGATGCT------------------GATCAAGAATATATATACT...............................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTATGG----------GGTCGGAGATGTTTCCTTC............................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAG.......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TATATATACTTTATGG----------GGTCGG.........................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TACATTTGGATTTCGCACA..............................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTACATACATTTGGATTTCGCACAA.............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGAATATATATACTTTATGG----------GG.............................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ATATACTTTATGG----------GGTCGGAG.......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-------------------------GATATAATCCACGCGCATCTCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGGATTACTATGCAGGCTTTGCCATAGAGAATGTTGTGCCTGCTTATATAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................GATTACTATGCAGGCTTTGCCATA..........................	24	1	1.00	1	0	0	0	0	1	0

droGri2

CAGTTGACGAAATACTTAAGGATATTGACAGGAACTATGATTATCTCAAGGTAAAATTTGTGA---------AATG-G--------------------------------T----CT--TA--------------------------------------------------------------TTATCTA-----------------------------------------------------------------------------------------------------------------------------A-ATTC---CCAACTCACAAACACT----------CTCGTTAAAGGATTACTATGCTGGCTTTGCTATAGAGAACGTTGTACCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTTTGCTATAGAG.......................	18	1	1.00	1	1	0

droAna3

TTAATACAGA----------------------------------------------------------------------------------------------------------------------------------------------------CAGACGGAA--ATGGCTATATTGACTCGGCTGTTGATGCT------------------GATCAAGAGTATATATG------GG----------GGTCGGAATTGATTCCTCTTTGCTGT-GTATAC-------ATACACACGAATACAATATA--------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CTGTTGATGAGATACTCAAGGATATAGACAGGAACTACGACTACTTGAAGGTTGTGC----TA---------AATATT--------------------------------A-----------TTTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------TTAAACATGAT--AAAAAT-CAGGATT-TTTCTTTCAGGATTACTATGCTGGCTTTGCCATTGAGAACGTGGTGCCGGCCTATATAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGTCGATGAGATCCTTAAGGACATTGACAGGAACTACGATTATCTCAAGGTGAAGCTG-TGA---------AAGGAA--------------------------------A------------------------G---------------------------------CTTTTTAAGTAAGATTATCTAA------------------------------------------------------------------------------------------------------------TAA-----TTTA------------------------------AT-----T-GCATTTCCAGGACTACTATGCTGGCTTTGCCATAGAAAATGTGGTGCCTGCCTATATAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGGATTACTATGCTGGCTTTGCCATTGAAAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCGTCGATGAAATTCTAAAGGATATCGACAGGAACTACGATTATCTAAAGGTGATTTCC-TTA---------AACCTT--------------------------------A-----------CTCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TGGT---TCTTTTAAAACATATTTT----A---CGGTTTTTAGGATTATTATGCCGGCTTTGCCATAGAAAACGTGGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCGTTGATGAAATACTAAAGGATATCGACAGGAACTACGATTATCTAAAGGTGGTTTCT-TTA---------AAGTTA--------------------------------A-----------CTTCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----ATTATTTTACCAAATATTTAT-------TGTATTTTAGGATTATTATGCCGGCTTTGCCATTGAAAACGTGGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAAA----------------------------------------------TAAATAAA-TGA---------G-------------------AATCTGGAAAAAATCA---------------------AGTGAATACAATTGAATA-TGAG-----ACAGACGGACAGACGGCTAAATCGACTCGGCTACTGATCCT------------------GAGCAAGAATATATATACTTTATGG----------GGTCGGAAACGCTTCCTTTAACCTGTTACATAC-------TTTCTGACGAATCTAGTATACCCT-------TT---------------------TA---CTTTACGAATAACGAGTATACAAATTCTACAATGACAACTGT------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGTCGATGAGATTCTAAAGGATATCGACAGGAACTACGATTATCTCAAGGTGGTTTCT-TTA---------AAATAG--------------------------------A-----------ATCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ATCC---TTATTTAACTTATATTT-T--TG---CCTTTTTTAGGATTACTATGCCGGCTTTGCCATAGAGAACGTTGTCCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAGTCGATGAGATTCTCAAGGATATCGACAGGAACTACGATTATCTGAAGGTGGGTTCT-TTA---------AATCTC--------------------------------A-----------ATCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TGTATTCTGATTAATTAT-GT-------TTTTGTTTAGGATTACTATGCTGGCTTTGCCATTGAGAATGTGGTTCCCGCTTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGTTGATGAGATACTCAAGGATATCGACAGGAACTACGATTATCTAAAGGTAAATCCT-TTA---------AACTTC--------------------------------C-----------TTTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATG---TATTTCAACAAACATT-GC-------TTTCTTTCAGGACTACTACGCTGGTTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................TTTGCCATAGAGAACGTTGTGCCCG..........	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GAGAACGTTGTGCCCGCCTACATAGC	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATATCGACAGGAACTACGA..................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
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....................GATATCGACAGGAACTACGAT.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TAGAGAACGTTGTGCCCGCCTACATAG.	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................GAACTACGATTATCTAAAGGACT....................................................................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTTCAGGACTACTACGCTGGT...................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCCCGCCTACATA..	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCCATAGAGAACGTTGTGC.............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAGGATATCGACAGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAT-------------------------------------------------------------------------------------------------------------------------------------------------CGAG-----ACAGAAGGAC--ATGGCTAGATCGACTCGGCTATTGATCCT------------------GATCAA------------------T----------GGTCGGAAACGCTTCCTTCTGCCAGTAATACAC-------TTTTCAACAAATCTAGTATACCCT-------TA---------------------TACTCTACGAGTAACGGTTATTATAATGGCTTT--------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................GATCGACTCGGCTATTGATCCT------------------G.................................................................................................................................................................................................	23	20	5.90	118	0	0	0	0	0	0	0	0	0	0	118	0	0	0	0	0	0
................................................................................................................................................................................GATCGACTCGGCTATTGATCCT------------------GATC..............................................................................................................................................................................................	26	20	2.90	58	0	0	0	21	0	0	0	0	0	0	37	0	0	0	0	0	0
..................................................................................................................................................................................TCGACTCGGCTATTGATCCT------------------GATCAA------------------T----------...............................................................................................................................................................	27	9	1.33	12	0	0	0	0	0	0	3	8	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................GATCGACTCGGCTATTGATCCT------------------..................................................................................................................................................................................................	22	20	0.70	14	0	0	0	0	0	0	0	0	0	0	12	0	0	2	0	0	0
..................................................................................................................................................................................TCGACTCGGCTATTGATCCT------------------GAT...............................................................................................................................................................................................	23	20	0.65	13	0	0	0	0	0	0	1	0	1	10	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TACCCT-------TA---------------------TACTCTACGAGTAACGG................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGA........................................................................................................................................................................................................................	24	20	0.40	8	0	0	0	0	0	0	2	0	3	0	0	0	3	0	0	0	0
..................................................................................................................................................................................TCGACTCGGCTATTGATCCT------------------GATCAA------------------..........................................................................................................................................................................	26	20	0.35	7	0	0	4	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TCGACTCGGCTATTGATCCT------------------GA................................................................................................................................................................................................	22	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
............................................................................................................................................................................................................................AA------------------T----------GGTCGGAAACGCTTCCTTCTGC.........................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTAT...........................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGAT.......................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.............................................................................................................................................................................CTAGATCGACTCGGCTATTGATCCT------------------..................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0
...............................................................................................................................................................................AGATCGACTCGGCTATTGATCCT------------------GA................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGG...............................................................................................................................................................................................................................	17	20	0.20	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
................................................................................................................................................................................GATCGACTCGGCTATTGATCCT------------------GATCA.............................................................................................................................................................................................	27	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATT..........................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATCC.....................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGACTCGGCTATTGATCCT------------------GATCAA------------------T----------...............................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GCTAGATCGACTCGGCTATTGATCC.....................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................TCGGCTATTGATCCT------------------GAT...............................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................TCGACTCGGCTATTGATCCT------------------..................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................................................................GGCTAGATCGACTCGGCTATT..........................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.................................................................................................................................................................................ATCGACTCGGCTATTGATCCT------------------..................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATTGATCCT------------------..................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................GGCTATTGATCCT------------------GAT...............................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATTGATCCT------------------GA................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................GAC--ATGGCTAGATCGACTCGG...............................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................CTAGATCGACTCGGCTATTGATCCT------------------G.................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ACTCGGCTATTGATCCT------------------GATCAA------------------T----------...............................................................................................................................................................	24	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCGGCTATTGATCCT------------------GATCAA------------------T----------...............................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATTGATCCT------------------GATCAA------------------T----------...............................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................AGATCGACTCGGCTATTGAT.......................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................TCGACTCGGCTATTGATCCT------------------GATCA.............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATTGATCCT------------------GAT...............................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................AC--ATGGCTAGATCGACTCGGCT.............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATC......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTG.........................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATCCT------------------G.................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTAGATCGACTCGGCTATTGATCCT------------------GC................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CTCGGCTATTGATCCT------------------GATCAA------------------..........................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTAGATCGACTCGGCTATTGA........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................GGAC--ATGGCTAGATCGACTCGG...............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................GATCGACTCGGCTATTGATCCT------------------GA................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGACTCGGCTATTGATCC.....................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATTGAT.......................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................GGAC--ATGGCTAGATCGACTCGGCTA............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATTGATCCT------------------G.................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................GGAC--ATGGCTAGATCGACTCGGCT.............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATTGATC......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................GGCTAGATCGACTCGGCTATTGAT.......................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................ATGGCTAGATCGACTCGGCT.............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................TAGATCGACTCGGCTATT..........................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................TCGGCTATTGATCCT------------------GATCAA------------------..........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

CAGTTGATGAGATTCTCAAGGATATCGACAGAAACTACGATTATCTAAAGGTAATTCAT-TTA---------AACTTC--------------------------------G-----------TTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATG---TATTTTAACTAACATT-GC-------TTTATTTCAGGATTACTACGCTGGTTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CAGTTGATGAGATTCTTAAAGATATCGACAGGAACTACGATTATCTTAAGGTAATTTCT-TTA---------AACTTA--------------------------------ATGTTCT--TAA-------TGTTATTATACCCG---TTACTCGTAGAGTAAAAGGGT--ATAG-TAGATTCGTTCTATTCGTCACTATGCTTAGTGACGGGTATCAGATAGTCGGG-------------AGTCT------------------------------------------------------CGACTATAGCATACTCT-------CTTATTTTAACTAACATT-AA-------TTTATTTTAGGACTACTATGCTGGCTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................CACTATGCTTAGTGACGGGT......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................CGTAGAGTAAAAGGGT--ATAG-TAGA........................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TCGTAGAGTAAAAGGGT--ATAG-TAGA........................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TCGTAGAGTAAAAGGGT--ATAG-T...........................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CAGTTGATGAGATTCTCAAGGATATCGACAGAAACTACGATTATCTAAAGGTAATTCCT-TAA---------AACTTG--------------------------------A-----------TTTCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTTATTTTTACTGACATT-GT-------TTTATTTCAGGACTACTATGCTGGCTTAGCCATAGAGAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dps_784

2:25398156-25398320 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads