ID:

dps_775

 Coordinate:

2:24775383-24775663 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-48.9 -48.8 -48.7

Flybase annnotation

CDS [Dpse\GA22041-cds]; CDS [Dpse\GA22041-cds]; exon [Dpse\GA22041:8]; exon [Dpse\GA22041:7]; intron [Dpse\GA22041-in]

No Repeatable elements found

mature
  1. Unknown_group_684:12710-12730 -
  2. XL_group1e:8169667-8169687 -
  3. XL_group1e:11970289-11970309 -
  4. 3:4308768-4308788 +
  5. 3:6101324-6101344 +
  6. 3:16819776-16819796 -
  7. 2:5018911-5018931 -
  8. 2:10131117-10131137 +
  9. 2:23870069-23870089 +
  10. dps_775  2:24775503-24775523 -
  11. 2:26433181-26433201 -
  12. XR_group8:3518888-3518908 -
  13. XR_group8:3547384-3547404 +
  14. XR_group8:7988947-7988967 +
  15. 4_group3:2933480-2933500 +
  16. 4_group3:9996800-9996820 -
  17. 4_group4:5146529-5146549 -
  18. XR_group6:1550730-1550750 +
  19. XL_group1a:3149780-3149800 -
  20. Unknown_singleton_3919:1448-1468 -
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTGCACGACACCAATTCCAAGATATGTCGCAATTTGCATGAAACAAAAGGTTCGTTCCAGCCAGTGCCTGGTCGAGAGATCCAGCCAGGGACCCCTTCGGAGCCCTGGGAACCTTACGTTATTCACAATATTTCCTGTACGATCCGATCCGATCTGATCTCTTCTTGGCTTTTGTTTCACAAACCTTATGTTTTGTTGTTGTTGTTGTTGTATTTATCTACTTGTGTATAACGTATCGCTATTCCCCATTGATTTGTATTTGTTGCTACTTTCTTTCACCTTTTACCTTTTGCCCTCTTTCTATGTATTCTTTTGCACACGTAATCACAGTCGATATCGAAGCTTTAAAGCACGCTCCTAACGGCCAGGCCTGGGCGGGG
**************************************************....((..((((.(((((((((((....)).))))((((((..((....))..))))))......((((((((.(((((........(((((((.((((((((...((.....))))))..........(((((........)))))....))))..)))))))........))))).))))))))....................))))).))))..))..................................((((......)))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 V112
male body
......................................................................................................................................................................................................................................................................................................................................................................CTAACGGCCGGGCCTGGGCGG.. 21 1 1 1.00 1 0 1 0 0 0
.......................TATGTCGCAATTTGCATGAAACA............................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................................................CGAGTGATCTAGCCATGG.................................................................................................................................................................................................................................................................................................. 18 3 20 0.75 15 15 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................GCGCTCATAACGGTCAGGCC......... 20 3 2 0.50 1 1 0 0 0 0
.............AACTCCAAGATCTGTCGCAACTT......................................................................................................................................................................................................................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0
...........................................................................................................................TCACAATATGTACTGTACGC.............................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0
................................ATTAGGATGAAACAAAAGG.......................................................................................................................................................................................................................................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................ATATCGGCGCTTTAAAG.............................. 17 2 8 0.13 1 0 0 0 1 0
......................................................................................................................................................................................................................................................ACATTAATTTGTATGTGTTGC.................................................................................................................. 21 3 20 0.10 2 2 0 0 0 0
..............................................................................................................................................................................................GTTTTGTTGTTGTTGTTGTTG.......................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................TGTTGTTGTTGTTGTTGTA........................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0
.....................................................................TAGTCGAGTGATCCCGCC...................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1
....................................................................................................................................................................................CAACCCTTATCTTTAGTTG...................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CAACGTGCTGTGGTTAAGGTTCTATACAGCGTTAAACGTACTTTGTTTTCCAAGCAAGGTCGGTCACGGACCAGCTCTCTAGGTCGGTCCCTGGGGAAGCCTCGGGACCCTTGGAATGCAATAAGTGTTATAAAGGACATGCTAGGCTAGGCTAGACTAGAGAAGAACCGAAAACAAAGTGTTTGGAATACAAAACAACAACAACAACAACATAAATAGATGAACACATATTGCATAGCGATAAGGGGTAACTAAACATAAACAACGATGAAAGAAAGTGGAAAATGGAAAACGGGAGAAAGATACATAAGAAAACGTGTGCATTAGTGTCAGCTATAGCTTCGAAATTTCGTGCGAGGATTGCCGGTCCGGACCCGCCCC
**************************************************....((..((((.(((((((((((....)).))))((((((..((....))..))))))......((((((((.(((((........(((((((.((((((((...((.....))))))..........(((((........)))))....))))..)))))))........))))).))))))))....................))))).))))..))..................................((((......)))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 SRR902010
ovaries
 M062
head
....................................................................................CGTTCCCTGGGGCAGCCTC...................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
.................GGTTCTAGACAGCGTTCATCG....................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................ACAACAACAACAACAACATAACAAGAT................................................................................................................................................................ 27 2 5 0.20 1 1 0 0 0 0
..............................................................................................................................................TAGGCTAGGCTAGACAAGAG........................................................................................................................................................................................................................... 20 1 6 0.17 1 1 0 0 0 0
.........................................................................................................................TGAGTGTAATAATGGACATG................................................................................................................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GTGCCATGATTGCCGGTTC........... 19 3 8 0.13 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CGAAATTTTGTACGAAGATT................... 20 3 9 0.11 1 1 0 0 0 0
....GTGCTGTGGTTAATCTACTA..................................................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0
................................................................................................................................................GGGTAGGCTAGACTCGAG........................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 1 0
........................................................................................................................................................................................................................................GCTTGGCAATAAGGGGTAA.................................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0
......................................................................................................................................................................................................CAACAACAACAAAACAAATAGA................................................................................................................................................................. 22 2 18 0.06 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:24775333-24775713 - dps_775 GTTGCACGACACCAATTCCAAGATATGTCGCAATTTGCATGAAACAAAAGGTTCGTTCCAGC------CAGTGC-------CTGGTCGAGAGATCCAGCCAGGGACCCCTTCGGA------------------------------------------------------------------------------------------------------------------------------------GCCCTGGG-----------AACC-T-TA------CGTTATTCACAATAT-TTCCTGTAC---------GATCCG------------------ATCCGATCTGATCTCTTCTTGGCTTTTGTTTCACAAACCTTATGTTTTGT-------------------------------------------------------------TGT-----------------------------------------------------------------------------------------TGTTGTTGTTGTATTTATCTAC--TTGTGTATAACGTA----------------------TCGCTA---T----------------TCCCCATTGATT----TGTATTTGTTGC------------------TACTTTCTTTCACCTTTTACCTTTTGCCCTCTTTCTATGTATTCT--TT------------------------TGCA--C-ACGTA----------------------A------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCTCCTAACGGCCAGGCCTGGGCGGGG
droPer2 scaffold_6:76234-76606 - GTTGCACGACACCAATTCCAAGATATGTCGCAATTTGCATGAAACAAAAGGTTCGTTCCAGC------CAGTGC-------CTGCTCGAGAGATCCAGCCAGGGACCCCTTCGGA------------------------------------------------------------------------------------------------------------------------------------GCCCTGGG-----------AACC-T-TA------CGTTATTCACAATAT-TTCCTGTAC---------GATCCG------------------A-----TCTGATCTCTTCTTGGCTTTTGTTTCACAAACCTTACGTTTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTGTTGTATTTATCTAC--TTGTGTATAACGTA----------------------TCGCTA---T----------------TCCCCATTGATT----TGTATTTGTTGC------------------TACTTTCTTTCACCTTTTACCTTTTGCCCTCTTTCTATGTATTCT--TT------------------------TGCA--C-ACGTA----------------------A------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCTCCTAACGGCCAGGCCTGGGCGGGG
droWil2 scf2_1100000004902:2074241-2074695 - ATTGCATGAAACTAATTCCAAGATTTGTCGTAATCTGCATGACACTAAAGGTGTGTGT-------------------GT--------G----------------------------------TGTGTTGACGGGGCCCAAATATCATGTATTCATGGCGAAGAAGAGTCAGTAGTTTTTTTTTTTTGGTTGGGTTTTTTCAACTTCTTTCCTCGAGTAACTATTGACTCTGTCCATTAATT-TATAAACGTTGTAAATTGTAATGAAGATGATC-------TTTAGG---CTATGT-------------------------------------------G--------------TCCATGGCTATTATTTAATTGACTTTTCGTAT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---T--TTT------ACACGCTC---T----------------TTCCAATTGGTTTGTTCGTATATGTTGCGATTTTTCTTTTCTTT-------------CTTGTACATTTATG-CCTTATTTCTATGTATTTT--GTTTTTCTTTTGGCACACA------C------------TC----------------ACACAA--ACACACACGCAATACACAAC--ACACAGTCGATATTGAAGCTTTAAAGCAC---------------GCTCCCAATGGCCAGCCCTGGGCTGGG
droVir3 scaffold_13047:8230497-8230638 - TTTGTTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGTTGT-----------------GTATTTTCGTTTACCTTT-----GTT-TCGCCTATCTAT-----CT--TT---------TACACACA------CTGCACACTACGTAA----------------ATACAAAC---------------AC-AC--ACCCAGTCGATATCGAAGCTTTGAAGCAC---------------GCTCCCAATGGCCAGCCCTGGGC----
droMoj3 scaffold_6540:8912770-8912940 - TTGTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTGTTGCCTTTGATTGC--TTTTGTTT----TATTT------TATTTATTTTATTTTGCTT---T----------------TTTTTTTTT-------TTTTTTTTT----------------------------------TTTTTTTTTTTGGTGCGCTGTTT--GCATTTT--GTTTAACATTTGATACACA------C------------AC----------------ACACAA--A--------------------------CAAAACATAAACGCAGGAAGACAC---------------GTCGCTAA-------------------
droGri2 scaffold_15074:1379796-1380218 + ATTGCACGAAACGAACTCCAAGATCTGTCGCAACTTGCATGAGACGAAAGGTGCGTGTGAGG------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATATATACACATCTATATCTGATATCTGTATATATGTATATATATGAACGTATATCAAAATCCTTATGTAATATTGTAAATCAAATTCTGTATTGTGTAATATTGAATACCTTCCTACGACTCTCTTTT-------------------------------------GGCTCTCGTTGTTTGCAATTAT--TGTTGTTT----AA----A---C--TTT------ACACGCTCTTCTCGATTATGTAATTTATTATCTATCTGTTA-TTATTGTTTGTTGT-----------------GTATTTTC-------------TTTTCATCTGTTTTTCGCCTAC--TATCT-------TTTACACACACACACACTGCA--C-ACGTAAATATATACACACACACACACAC------------------------ACACAGTCGATATCGAAGCTTTGAAGCAC---------------GCTCCCAGTGGCCAGCTTTGG------
droAna3 scaffold_13340:11156697-11156967 + dan_3025 ACTGCACGACACCAATTCCAGGATCTGTCAAAACCTGCACGAAACAAAAGGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCACAAAGTCCTCCC-TAA---------GAACCT------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTCATTTCTGCTTAGCGACTATAGAGCTTCTGAAGTC---------------------------------------TTAAAGA-TACTTGTATT-ACCTGCTA---T----------------TATC-ATTGATT----TTTATCTATTAC------------------CACC-----------------CGA--TCCTCTTTCTATGTATT-T--GT------------------------TGCA--C-CCGTAA----------------ACACAAAC----------------------ACACAGTCGATATTGAAGCCTTAAAGCAC---------------GCTCCTTTTGGTCATCCCTGGACG---
droBip1 scf7180000396691:69339-69612 + ACTGCACGACACCAATTCCAGGATCTGTCAGAATCTGCACGAAACTAAAGGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCCACG---TCCTCCT-TACCAACCTATGT-----------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTATTTCTGCTTAGCGACTACAGAGCTTCCGAATTC---------------------------------------TTTAAGA-TATTTGTATT-TCCTGCTA---T----------------TATCGATTGATT---TTTTATCTATTAC------------------CACC-----------------CGA--TCCTCTTTCTATGTATT-T--GT------------------------TGCA--C-CCGTAA----------------TCACAAAC----------------------ACACAGTCGATATTGAAGCCTTAAAGCAC---------------GCTCCCTTTGGTCAGCCCTGGGCG---
droKik1 scf7180000302778:516435-516625 - TCTCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CT--------------------------------------------------------------------------------CCCGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------T------TATTTGTGTT-TATTGCTA---T----------------TACCAATTAATT---TAGTCTCT-TT-------------------------------GTTGTCCACTCTTGGCCTTCTTTCTATGTATTCTATAT------------------------TGCACAC-TCGTAA----------------ACACTA---------------------CAATCACAGTCGATATCGAAGCTTTAAAGCACCCAGCAGCAGCAGCAGCTGCCAGCAGCCAGGTTTGGACGGGG
droFic1 scf7180000454096:1276609-1276916 + ATTGCATGACACCAACTCCAAGATCTGTCGCAATCTGCATGAAACAAAAGGTTC--------------------GTTGTTCTTGG---TG-----------------------------------------------------------------------------------------------------------------------------------------------------------AGGTCTTGTA-----------AAACGATT-------TGTTGGTCACCATTC-TTCCG-TTT---------AAATGT------------------GTCCTTTCCATT--ACAACTGGCCTTAGTTACACCGACCTATCGTATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---A--CAT------ACTTGCTA---C-------------TACTACCTACTTACT---TAGTATCTGTTGC------------------CGCT-----------------TATT-ACATCTTTCTATGTACTCT--CT------------------------TGCA--C-CCGTAA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCTCCCACTGGCCAGCTCTGGGCGGGG
droEle1 scf7180000491104:1891811-1892170 + ACTGCACGACACCAATTCCAAGATCTGCCGCAATTTGCACGAAACAAAAGGTGGGTTG--GCTTGTTT------GTTGTTT------GTGGGATCAGGA-------------GCAGCTCTGGA-------------------------------------------------------------------------------------------------------ATCT----ATTTACA-TACAAGCCCTGTA-----------AAACAACTC------CGTTGGTCACCATGT-TTCCT-TAT------ATGTAACTT------------------GTATTCTCGATTTGCTAAATGGCTTTAGTTACACAAATTTCTCGTATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---A--CCT------ACTTGCTA---C------------CTACTACCTATTAATTT-TTAGTATCTGTTGC------------------TATC-----------------CGTT-GCCTCTTTCTATGTACTCT--GT------------------------TGCA--C-TCGTAA----------------ACACAA------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCCCCAAATGGCCAGCCCTGGTCGGCG
droRho1 scf7180000779219:18963-19300 - ACTGCACGACACGAATTCCAAGATCTGCCGGAATTTGCACGAAACAAAAGGTTT--------------------GTTGTTT------GAGGGATCAAAA-------------GCAGCACTGGA-------------------------------------------------------------------------------------------------------ATCT----GTGTATATTACAGGCCTTGTA-----------AAATGACT-------CATTGGTCACCATGT-TTCCT-TAT---------AAACTT------------------GTCTTCTCGAATTGCTAAATGGCTTTAGTTACACAAATTTCTCGTATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---A--CCT------ACTTGCTA---T----------------TACCTATTAATT---TAGTATCTGTTGC------------------CACC-----------------CATT-ACCTCTTTCTATGTACT-T--CT------------------------TGCA--C-TCGTAA----------------TCACAA------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCTCCCAATGGCCAGCCTTGGGCCGGG
droBia1 scf7180000302098:322795-323119 - GTTGCATGACACCAATTCGAAGATCTGCCGTAACTTGCATGAAGCAAAAGGTTT--------------------GTTGTTT------GTCATATCGAGT-------------GCAGCTCTCGG-------------------------------------------------------------------------------------------------------ATAT----GTGTTCACTATAGTCCTTTTA-----------AAAAGACTTATCGAGTTTTACTCACG----------------------------A------------------GTCCTTTCCACCCAAAAAATGGCTTTAGTTACAAAATATATATATATATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT---A--CCT------AATTGCTA---T----------------ATCCTTTTAATT---TAGAATCAGCTGT------------------CACT-----------------CATT-ATCTTTTTCTACGAACACT--CT------------------------TGCA--C-TTGTAA----------------ACACAT------------------------TCACAGTTGAAATCGAAACTTTAAAGCAC---------------GTCTCTAGTGGCCACCCTTGGGC----
droTak1 scf7180000414202:18387-18692 + ATTGCACGACACCAATTCCAAGATCTGCCGTAATTTGCACGAAACGAAAGGTTT---------------------------------GTAGGATTAGCT-------------T------------------------------------------------------------------------------------------------------------------------------------A--TCTAGCT-----------AAATTACT-------CATCAGTCACGATAA-TGCCT-TTC--------GAAACTT------------------ATTCTGTCCAATTGAAACTTGGTTTTATTTACACAAATCTCCCGTGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGA---A--CTT------ACTTGCTA---T----------------TATCCAATAATT---TAGAATATGTTGC------------------CACT-----------------CATT-ACCTCTTTCTATGTACTCT--CT------------------------TGCA--C-TCGTAA----------------ACACAC------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCTCCTAGTGGCCACCTTTGGGCGGGG
droEug1 scf7180000409008:775930-776057 - TTTGCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCCATTGTTTATGCTTAAAATTGTATTTAACATA----------------------TTTACT---TTAAAAT------------------------------TGTGTTTT-----TCCTTTTTTCCC-TTATTTTTTTTAGTTTTTTTTTTTTGCCTGCTCTCTGCGCATTTT--TC------------------------TG---------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:149837-150108 + ATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATAATACAAAAGGTGT--------------------GTGGTTT------GTAGGATTGTGT-------------CCAGTTTAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGATGC-TTCCC-AAA---------------TTACGACA-----------------------------------AAATTACACAAATCTCTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT------TACTTGTACTCGTATGCTA------------------------------AT---TAGAATGTGTTGC------------------CACC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------TGCA--C-TTGCAA----------------ACACAA------------------------TCATAGTTGATATCGAAGCTTTAAAGCAC---------------TCCCCTAATAGCCAGCACTGGGCAGGT
droSim2 3r:133260-133521 + dsi_26890 ATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATGATACGAAAGGTGT--------------------GTTGTTC------GTAGGATTAAGT-------------CCAGTTTTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAC-------------------------------------------------------------------------AAATTACACAAATCTCTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT------TACTTGTACTCGTATGCTA---A----------------TACCTATTAAAT---TAGAATGTGTTGC------------------CACC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------CGCA--C-TTGCAA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCCCCTAACAGCCAGCCCTGGGCAGGT
droSec2 scaffold_6:268798-269077 + ATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATGATACGAAAGGTGT--------------------GTTGTTC------GTAGGATTAAGT-------------CCAGTTTTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGATGC-ATCCC-AAA---------------ATACGACA-----------------------------------AAATTACACAAATCTCTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT------TACTTGTACTCGTATGCTA---A----------------TACCTATTAAAT---TAGAATGTGTTGC------------------CACC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------CGCA--C-TTGCAA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCCCCTAACAGCCAGCCCTGGGCA---
droYak3 3R:511945-512242 + ATTGCACGACACCAACTCCAAGATCTGCCGGAATTTGCATGATACAAAAGGTAT--------------------GTTGTAC------GTAGGATTAAGT-------------TAAGTTTTCGT-------------------------------------------------------------------------------------------------------TCCT----GTCTGC-------------------------------------------------------------T-ATA---------------ATATAATAGTATTTATAT----------ATTGTTCAACGTCTTAATTTACACAAATCTGGGATTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---T--CTT------GTATGCTA---A----------------TTTCTATTATAT---AATAATATGTTGC------------------CTCT-----------------CATT-TCCTCTTTCTATGTACTCT--CT------------------------TGCA--C-TTGCGA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCCCCTAATAGCCAGCCCTGGGCAGG-
droEre2 scaffold_4770:504141-504279 + ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACT------CTT---A----------------TTTCTACTATAT---TAGAAT-TGTTGC------------------CCCT-----------------CATT-TCCTCTTTCTATGTACTCT--GT------------------------TGCA--C-TTGCAA----------------ACCAAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCTCCTAATAGCCAGCCCTGGGCAGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTTGCACGACACCAATTCCAAGATATGTCGCAATTTGCATGAAACAAAAGGTTCGTTCCAGC------CAGTGC-------CTGGTCGAGAGATCCAGCCAGGGACCCCTTCGGA------------------------------------------------------------------------------------------------------------------------------------GCCCTGGG-----------AACC-T-TA------CGTTATTCACAATAT-TTCCTGTAC---------GATCCG------------------ATCCGATCTGATCTCTTCTTGGCTTTTGTTTCACAAACCTTATGTTTTGT-------------------------------------------------------------TGT-----------------------------------------------------------------------------------------TGTTGTTGTTGTATTTATCTAC--TTGTGTATAACGTA----------------------TCGCTA---T----------------TCCCCATTGATT----TGTATTTGTTGC------------------TACTTTCTTTCACCTTTTACCTTTTGCCCTCTTTCTATGTATTCT--TT------------------------TGCA--C-ACGTA----------------------A------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCTCCTAACGGCCAGGCCTGGGCGGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................TATGTCGCAATTTGCATGAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTTTGT-------------------------------------------------------------TGT-----------------------------------------------------------------------------------------TGTTGTTGTTG.....................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------------------------------------TGT-----------------------------------------------------------------------------------------TGTTGTTGTTGTA...................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
GTTGCACGACACCAATTCCAAGATATGTCGCAATTTGCATGAAACAAAAGGTTCGTTCCAGC------CAGTGC-------CTGCTCGAGAGATCCAGCCAGGGACCCCTTCGGA------------------------------------------------------------------------------------------------------------------------------------GCCCTGGG-----------AACC-T-TA------CGTTATTCACAATAT-TTCCTGTAC---------GATCCG------------------A-----TCTGATCTCTTCTTGGCTTTTGTTTCACAAACCTTACGTTTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTGTTGTATTTATCTAC--TTGTGTATAACGTA----------------------TCGCTA---T----------------TCCCCATTGATT----TGTATTTGTTGC------------------TACTTTCTTTCACCTTTTACCTTTTGCCCTCTTTCTATGTATTCT--TT------------------------TGCA--C-ACGTA----------------------A------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCTCCTAACGGCCAGGCCTGGGCGGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATTGCATGAAACTAATTCCAAGATTTGTCGTAATCTGCATGACACTAAAGGTGTGTGT-------------------GT--------G----------------------------------TGTGTTGACGGGGCCCAAATATCATGTATTCATGGCGAAGAAGAGTCAGTAGTTTTTTTTTTTTGGTTGGGTTTTTTCAACTTCTTTCCTCGAGTAACTATTGACTCTGTCCATTAATT-TATAAACGTTGTAAATTGTAATGAAGATGATC-------TTTAGG---CTATGT-------------------------------------------G--------------TCCATGGCTATTATTTAATTGACTTTTCGTAT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---T--TTT------ACACGCTC---T----------------TTCCAATTGGTTTGTTCGTATATGTTGCGATTTTTCTTTTCTTT-------------CTTGTACATTTATG-CCTTATTTCTATGTATTTT--GTTTTTCTTTTGGCACACA------C------------TC----------------ACACAA--ACACACACGCAATACACAAC--ACACAGTCGATATTGAAGCTTTAAAGCAC---------------GCTCCCAATGGCCAGCCCTGGGCTGGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................TTCCTCGAGTAACTATTGACTCTGTCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00220000
............................CGTAATCTGCATGACACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TTTGTTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGTTGT-----------------GTATTTTCGTTTACCTTT-----GTT-TCGCCTATCTAT-----CT--TT---------TACACACA------CTGCACACTACGTAA----------------ATACAAAC---------------AC-AC--ACCCAGTCGATATCGAAGCTTTGAAGCAC---------------GCTCCCAATGGCCAGCCCTGGGC----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACACTACGTAA----------------ATACA................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------GTATTTTCGTTTACCTTT-----GT....................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
TTGTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTGTTGCCTTTGATTGC--TTTTGTTT----TATTT------TATTTATTTTATTTTGCTT---T----------------TTTTTTTTT-------TTTTTTTTT----------------------------------TTTTTTTTTTTGGTGCGCTGTTT--GCATTTT--GTTTAACATTTGATACACA------C------------AC----------------ACACAA--A--------------------------CAAAACATAAACGCAGGAAGACAC---------------GTCGCTAA-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATTGCACGAAACGAACTCCAAGATCTGTCGCAACTTGCATGAGACGAAAGGTGCGTGTGAGG------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATATATACACATCTATATCTGATATCTGTATATATGTATATATATGAACGTATATCAAAATCCTTATGTAATATTGTAAATCAAATTCTGTATTGTGTAATATTGAATACCTTCCTACGACTCTCTTTT-------------------------------------GGCTCTCGTTGTTTGCAATTAT--TGTTGTTT----AA----A---C--TTT------ACACGCTCTTCTCGATTATGTAATTTATTATCTATCTGTTA-TTATTGTTTGTTGT-----------------GTATTTTC-------------TTTTCATCTGTTTTTCGCCTAC--TATCT-------TTTACACACACACACACTGCA--C-ACGTAAATATATACACACACACACACAC------------------------ACACAGTCGATATCGAAGCTTTGAAGCAC---------------GCTCCCAGTGGCCAGCTTTGG------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................CCAAGATCTGTCGCAACTTGCATGAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110
droAna3
ACTGCACGACACCAATTCCAGGATCTGTCAAAACCTGCACGAAACAAAAGGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCACAAAGTCCTCCC-TAA---------GAACCT------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTCATTTCTGCTTAGCGACTATAGAGCTTCTGAAGTC---------------------------------------TTAAAGA-TACTTGTATT-ACCTGCTA---T----------------TATC-ATTGATT----TTTATCTATTAC------------------CACC-----------------CGA--TCCTCTTTCTATGTATT-T--GT------------------------TGCA--C-CCGTAA----------------ACACAAAC----------------------ACACAGTCGATATTGAAGCCTTAAAGCAC---------------GCTCCTTTTGGTCATCCCTGGACG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T----------------TATC-ATTGATT----TTTAT.....................................................................................................................................................................................................................................1811.001000100
.................CCAGGATCTGTCAAAACCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
ACTGCACGACACCAATTCCAGGATCTGTCAGAATCTGCACGAAACTAAAGGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCCACG---TCCTCCT-TACCAACCTATGT-----------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTATTTCTGCTTAGCGACTACAGAGCTTCCGAATTC---------------------------------------TTTAAGA-TATTTGTATT-TCCTGCTA---T----------------TATCGATTGATT---TTTTATCTATTAC------------------CACC-----------------CGA--TCCTCTTTCTATGTATT-T--GT------------------------TGCA--C-CCGTAA----------------TCACAAAC----------------------ACACAGTCGATATTGAAGCCTTAAAGCAC---------------GCTCCCTTTGGTCAGCCCTGGGCG---SizeHit CountTotal NormTotal
No Reads
droKik1
TCTCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CT--------------------------------------------------------------------------------CCCGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------T------TATTTGTGTT-TATTGCTA---T----------------TACCAATTAATT---TAGTCTCT-TT-------------------------------GTTGTCCACTCTTGGCCTTCTTTCTATGTATTCTATAT------------------------TGCACAC-TCGTAA----------------ACACTA---------------------CAATCACAGTCGATATCGAAGCTTTAAAGCACCCAGCAGCAGCAGCAGCTGCCAGCAGCCAGGTTTGGACGGGGSizeHit CountTotal NormTotal
No Reads
droFic1
ATTGCATGACACCAACTCCAAGATCTGTCGCAATCTGCATGAAACAAAAGGTTC--------------------GTTGTTCTTGG---TG-----------------------------------------------------------------------------------------------------------------------------------------------------------AGGTCTTGTA-----------AAACGATT-------TGTTGGTCACCATTC-TTCCG-TTT---------AAATGT------------------GTCCTTTCCATT--ACAACTGGCCTTAGTTACACCGACCTATCGTATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---A--CAT------ACTTGCTA---C-------------TACTACCTACTTACT---TAGTATCTGTTGC------------------CGCT-----------------TATT-ACATCTTTCTATGTACTCT--CT------------------------TGCA--C-CCGTAA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCTCCCACTGGCCAGCTCTGGGCGGGGSizeHit CountTotal NormTotal
No Reads
droEle1
ACTGCACGACACCAATTCCAAGATCTGCCGCAATTTGCACGAAACAAAAGGTGGGTTG--GCTTGTTT------GTTGTTT------GTGGGATCAGGA-------------GCAGCTCTGGA-------------------------------------------------------------------------------------------------------ATCT----ATTTACA-TACAAGCCCTGTA-----------AAACAACTC------CGTTGGTCACCATGT-TTCCT-TAT------ATGTAACTT------------------GTATTCTCGATTTGCTAAATGGCTTTAGTTACACAAATTTCTCGTATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---A--CCT------ACTTGCTA---C------------CTACTACCTATTAATTT-TTAGTATCTGTTGC------------------TATC-----------------CGTT-GCCTCTTTCTATGTACTCT--GT------------------------TGCA--C-TCGTAA----------------ACACAA------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCCCCAAATGGCCAGCCCTGGTCGGCGSizeHit CountTotal NormTotal
No Reads
droRho1
ACTGCACGACACGAATTCCAAGATCTGCCGGAATTTGCACGAAACAAAAGGTTT--------------------GTTGTTT------GAGGGATCAAAA-------------GCAGCACTGGA-------------------------------------------------------------------------------------------------------ATCT----GTGTATATTACAGGCCTTGTA-----------AAATGACT-------CATTGGTCACCATGT-TTCCT-TAT---------AAACTT------------------GTCTTCTCGAATTGCTAAATGGCTTTAGTTACACAAATTTCTCGTATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---A--CCT------ACTTGCTA---T----------------TACCTATTAATT---TAGTATCTGTTGC------------------CACC-----------------CATT-ACCTCTTTCTATGTACT-T--CT------------------------TGCA--C-TCGTAA----------------TCACAA------------------------TCACAGTCGATATCGAAGCTTTAAAGCAC---------------GCTCCCAATGGCCAGCCTTGGGCCGGGSizeHit CountTotal NormTotal
No Reads
droBia1
GTTGCATGACACCAATTCGAAGATCTGCCGTAACTTGCATGAAGCAAAAGGTTT--------------------GTTGTTT------GTCATATCGAGT-------------GCAGCTCTCGG-------------------------------------------------------------------------------------------------------ATAT----GTGTTCACTATAGTCCTTTTA-----------AAAAGACTTATCGAGTTTTACTCACG----------------------------A------------------GTCCTTTCCACCCAAAAAATGGCTTTAGTTACAAAATATATATATATATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT---A--CCT------AATTGCTA---T----------------ATCCTTTTAATT---TAGAATCAGCTGT------------------CACT-----------------CATT-ATCTTTTTCTACGAACACT--CT------------------------TGCA--C-TTGTAA----------------ACACAT------------------------TCACAGTTGAAATCGAAACTTTAAAGCAC---------------GTCTCTAGTGGCCACCCTTGGGC----SizeHit CountTotal NormTotal
No Reads
droTak1
ATTGCACGACACCAATTCCAAGATCTGCCGTAATTTGCACGAAACGAAAGGTTT---------------------------------GTAGGATTAGCT-------------T------------------------------------------------------------------------------------------------------------------------------------A--TCTAGCT-----------AAATTACT-------CATCAGTCACGATAA-TGCCT-TTC--------GAAACTT------------------ATTCTGTCCAATTGAAACTTGGTTTTATTTACACAAATCTCCCGTGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGA---A--CTT------ACTTGCTA---T----------------TATCCAATAATT---TAGAATATGTTGC------------------CACT-----------------CATT-ACCTCTTTCTATGTACTCT--CT------------------------TGCA--C-TCGTAA----------------ACACAC------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCTCCTAGTGGCCACCTTTGGGCGGGGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTGCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCCATTGTTTATGCTTAAAATTGTATTTAACATA----------------------TTTACT---TTAAAAT------------------------------TGTGTTTT-----TCCTTTTTTCCC-TTATTTTTTTTAGTTTTTTTTTTTTGCCTGCTCTCTGCGCATTTT--TC------------------------TG---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATAATACAAAAGGTGT--------------------GTGGTTT------GTAGGATTGTGT-------------CCAGTTTAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGATGC-TTCCC-AAA---------------TTACGACA-----------------------------------AAATTACACAAATCTCTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT------TACTTGTACTCGTATGCTA------------------------------AT---TAGAATGTGTTGC------------------CACC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------TGCA--C-TTGCAA----------------ACACAA------------------------TCATAGTTGATATCGAAGCTTTAAAGCAC---------------TCCCCTAATAGCCAGCACTGGGCAGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............AATTCCAAGATCTGCCGGAATTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAGATCTGCCGGAATTTGCATAATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCTGCCGGAATTTGCATAATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATCTGCCGGAATTTGCATAATACAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTCCAAGATCTGCCGGAATTTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................T-------------CCAGTTTAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
.........................TGCCGGAATTTGCATAATACAAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................TGCCGGAATTTGCATAATACAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGT--------------------GTGGTTT------GTAGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAGATCTGCCGGAATTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................AGATCTGCCGGAATTTGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCAAGATCTGCCGGAATTTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAAGCTTTAAAGCAC---------------TCCCC......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GATCTGCCGGAATTTGCATAATACAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATCGAAGCTTTAAAGCAC---------------T..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCCAAGATCTGCCGGAATTTGCATAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAGATCTGCCGGAATTTGCATAATACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCTA------------------------------AT---TAGAATGTGTTGC------------------............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGCCAGCACTGGGCAG..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATCGAAGCTTTAAAG.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATCGAAGCTTTAAAGCAC---------------TCCCC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTTCTATGTACTCC--CT------------------------TA.................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GTCACGATGC-TTCCC-AAA---------------TTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCAATTCCAAGATCTGCCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAGATCTGCCGGAATTTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................TGCCGGAATTTGCATAATACAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................GATCTGCCGGAATTTGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------TCCCCTAATAGCCAGCACTG.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAGATCTGCCGGAATTTGCATAATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCAC---------------TCCCCTAATAGCCAGCACT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAC---------------TCCCCTAATAGCCAGCAC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAAGCTTTAAAGCAC---------------T..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCAGCACTGGGCAGGT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------TG.................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATGATACGAAAGGTGT--------------------GTTGTTC------GTAGGATTAAGT-------------CCAGTTTTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAC-------------------------------------------------------------------------AAATTACACAAATCTCTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT------TACTTGTACTCGTATGCTA---A----------------TACCTATTAAAT---TAGAATGTGTTGC------------------CACC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------CGCA--C-TTGCAA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCCCCTAACAGCCAGCCCTGGGCAGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............TTCCAAGATCTGCCGGAATTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
..............ATTCCAAGATCTGCCGGAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTTTCTATGTACTCC--CT------------------------...................................................................................................................................2111.00110000000000000000
..............................................AAAGGTGT--------------------GTTGTTC------GTAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
.........................TGCCGGAATTTGCATGATACGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
................................ATTTGCATGATACGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
..........ACCAATTCCAAGATCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
droSec2
ATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATGATACGAAAGGTGT--------------------GTTGTTC------GTAGGATTAAGT-------------CCAGTTTTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGATGC-ATCCC-AAA---------------ATACGACA-----------------------------------AAATTACACAAATCTCTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT------TACTTGTACTCGTATGCTA---A----------------TACCTATTAAAT---TAGAATGTGTTGC------------------CACC-----------------CATT-TCCTCTTTCTATGTACTCC--CT------------------------CGCA--C-TTGCAA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCCCCTAACAGCCAGCCCTGGGCA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCTATGTACTCC--CT------------------------CGC................................................................................................................................2111.0011000
.................CCAAGATCTGCCGGAATTTGCATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
droYak3
ATTGCACGACACCAACTCCAAGATCTGCCGGAATTTGCATGATACAAAAGGTAT--------------------GTTGTAC------GTAGGATTAAGT-------------TAAGTTTTCGT-------------------------------------------------------------------------------------------------------TCCT----GTCTGC-------------------------------------------------------------T-ATA---------------ATATAATAGTATTTATAT----------ATTGTTCAACGTCTTAATTTACACAAATCTGGGATTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---T--CTT------GTATGCTA---A----------------TTTCTATTATAT---AATAATATGTTGC------------------CTCT-----------------CATT-TCCTCTTTCTATGTACTCT--CT------------------------TGCA--C-TTGCGA----------------ACACAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCCCCTAATAGCCAGCCCTGGGCAGG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACT------CTT---A----------------TTTCTACTATAT---TAGAAT-TGTTGC------------------CCCT-----------------CATT-TCCTCTTTCTATGTACTCT--GT------------------------TGCA--C-TTGCAA----------------ACCAAA------------------------TCACAGTTGATATCGAAGCTTTAAAGCAC---------------GCTCCTAATAGCCAGCCCTGGGCAGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA--C-TTGCAA----------------ACCAAA------------------------TCACA..................................................................2211.0011000000

Generated: 05/17/2015 at 11:21 PM