ID:

dps_770

 Coordinate:

2:24221771-24221921 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.1

Flybase annnotation

exon [Dpse\GA27462:1]; CDS [Dpse\GA27462-cds]; intron [Dpse\GA27462-in]

No Repeatable elements found

mature
  1. Unknown_group_85:35216-35236 +
  2. Unknown_singleton_3986:1997-2017 +
  3. XL_group1e:2082515-2082535 +
  4. XL_group1e:9870019-9870039 +
  5. dps_3784  Unknown_group_17:54376-54396 +
  6. Unknown_group_25:30364-30384 +
  7. 3:4969628-4969648 +
  8. 3:15948196-15948216 +
  9. 2:12746763-12746783 +
  10. 2:23585055-23585075 +
  11. dps_770  2:24221791-24221811 +
  12. Unknown_group_253:7260-7280 +
  13. Unknown_group_456:3242-3262 +
  14. dps_3465  Unknown_group_9:11382-11402 +
  15. Unknown_group_171:7169-7189 +
  16. XL_group1a:460690-460710 +
  17. XL_group1a:4660015-4660035 +
  18. dps_3661  Unknown_group_252:7975-7995 +
  19. Unknown_singleton_371:933-953 +
  20. Unknown_singleton_599:396-416 +
  21. Unknown_group_12:50313-50333 +
  22. XL_group1e:10348912-10348932 +
  23. 3:12087889-12087909 +
  24. 2:6258385-6258405 +
  25. 4_group4:4152105-4152125 +
  26. XR_group6:645449-645469 +
  27. XL_group1a:572167-572187 +
  28. Unknown_singleton_1758:105-125 +
  29. 4_group1:2489480-2489500 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATTCAAAAGATATTAGATTGCCAATTTGAAATATTCGGTATTGTGCAAGGTGAGCTAAAGCACTAACCATACAGTATATAGATGTGCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
**************************************************..........((((....................)))).................................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 M059
embryo
 M062
head
......................................................................TACAGTATATAGATGTGCCAG................................................................................................................................................................ 21 0 20 1.45 29 26 3 0 0
................................................................TAACCATACAGTATATAGATGTGC................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
.....................................................................ATACAGTATATAGATGTGCCA................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0
.....................................................................ATACAGTATATAGATGTGC................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1
................................................................TAACCATACAGTATATAGATG...................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
......................................................................TGCAGTATATAGATGTGCC.................................................................................................................................................................. 19 1 20 0.05 1 0 0 1 0
...........................................................AGCACTAACCATACAGTATATA.......................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
.........................................................................AGTATATAGATGTGCCAG................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0
....................................................................CATACAGTATATAGATGTGCCC................................................................................................................................................................. 22 1 20 0.05 1 0 0 1 0

Anti-sense strand reads

CTAAGTTTTCTATAATCTAACGGTTAAACTTTATAAGCCATAACACGTTCCACTCGATTTCGTGATTGGTATGTCATATATCTACACGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
**************************************************..........((((....................)))).................................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
....................................................................GTATGTCATATATCTACACGG.................................................................................................................................................................. 21 0 20 0.25 5 5 0
..........................................................TTCGTGATTGGTATGTCATATAT.......................................................................................................................................................................... 23 0 9 0.11 1 0 1
...............................................................GATTGGTATGTCATATATCTACACGGT................................................................................................................................................................. 27 0 20 0.10 2 0 2
................................................................ATTGGTATGTCATATATCTAC...................................................................................................................................................................... 21 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:24221721-24221971 + dps_770 GATTCAAAAGATATTAGATTGCCAATTTGAAATATTCGGTATTGTGCAAGGTGAGCTAAAGCACTAACCATACAGTATATAGATGTGCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
droPer2 scaffold_3:6991601-6991662 + GATTCAAAAGATATTAGATTGCCAATTTGAAATATTCGGTATTGTGCAAGGTGAGCTAAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GATTCAAAAGATATTAGATTGCCAATTTGAAATATTCGGTATTGTGCAAGGTGAGCTAAAGCACTAACCATACAGTATATAGATGTGCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................TACAGTATATAGATGTGCCAG................................................................................................................................................................21201.452902600000030
................................................................TAACCATACAGTATATAGATGTGC...................................................................................................................................................................24200.1020200000000
.....................................................................ATACAGTATATAGATGTGCCA.................................................................................................................................................................21200.1020200000000
.....................................................................ATACAGTATATAGATGTGC...................................................................................................................................................................19200.0510001000000
................................................................TAACCATACAGTATATAGATG......................................................................................................................................................................21200.0510100000000
...........................................................AGCACTAACCATACAGTATATA..........................................................................................................................................................................22200.0510100000000
.........................................................................AGTATATAGATGTGCCAG................................................................................................................................................................18200.0510100000000
....................................................................CATACAGTATATAGATGTGCCC.................................................................................................................................................................22200.0510010000000
droPer2
GATTCAAAAGATATTAGATTGCCAATTTGAAATATTCGGTATTGTGCAAGGTGAGCTAAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/17/2015 at 11:17 PM