ID:

dps_77

 Coordinate:

Unknown_singleton_2928:829-885 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.9 -14.6

Flybase annnotation

ultra_scaffold [Unknown_singleton_2928]

No Repeatable elements found

mature
  1. Unknown_singleton_1492:39277-39300 -
  2. dps_69  Unknown_group_121:3571-3594 -
  3. dps_78  Unknown_singleton_1459:5840-5863 +
  4. dps_77  Unknown_singleton_2928:829-852 +
star
  1. dps_69  Unknown_group_121:3539-3564 -
  2. dps_78  Unknown_singleton_1459:5870-5895 +
  3. dps_77  Unknown_singleton_2928:859-884 +

Sense Strand Reads

CGAAGGAGATATGCCGGAAAGAACCATTGAGGTAATGCAAGTCTTGATAAAAGGTCAACAGAAAGATATGATGGTGGAGCTAGGTTCATTCGTGAAGACTTTGATCGAGGAAAATCTACGNNNACANNTAGGTAGGATGNACAATAGCTTCNNATAG
***********************************......(((((((..((((((..(((((.((.....((((...))))...)).))).))..)))))).)))))))...........************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 GSM343916
embryo
 SRR902011
testis
 M059
embryo
 GSM444067
head
..................................................AAGGTCAACAGAAAGATATGATGG................................................................................... 24 0 4 29.25 117 88 6 8 11 2 2 0
..................................................AAGGTCAACAGAAAGATATGATG.................................................................................... 23 0 4 10.50 42 29 6 4 2 0 0 1
.....................................................................................TCATTCGTGAAGACTTTGATCGAGG............................................... 25 0 3 10.00 30 30 0 0 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCGA................................................. 23 0 3 5.67 17 15 2 0 0 0 0 0
................................................................................TAGGTTCATTCGTGAAGACTTTGATC................................................... 26 0 3 4.67 14 4 7 3 0 0 0 0
.........TATGCCGGAAAGAACCATTGAGG............................................................................................................................. 23 0 4 3.25 13 3 9 0 1 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGT.................................................................................. 25 0 4 3.00 12 9 0 1 1 0 0 1
...................................................AGGTCAACAGAAAGATATGATGG................................................................................... 23 0 4 2.25 9 9 0 0 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCG.................................................. 22 0 3 2.00 6 6 0 0 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCGAG................................................ 24 0 3 2.00 6 5 0 0 0 1 0 0
..................................................AAGGTCAACAGAAAGATATGATGGTGG................................................................................ 27 0 4 1.75 7 7 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGAT..................................................................................... 22 0 4 1.50 6 2 3 0 1 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCGAGGA.............................................. 26 0 3 1.33 4 4 0 0 0 0 0 0
............................................................................................TGAAGACTTTGATCGAGGAAAATC......................................... 24 0 3 1.33 4 0 1 0 0 3 0 0
...........TGCCGGAAAGAACCATTGAGGTAATGC....................................................................................................................... 27 0 3 1.33 4 2 0 1 0 1 0 0
.............CCGGAAAGAACCATTGAGGTAATGC....................................................................................................................... 25 0 3 1.00 3 1 2 0 0 0 0 0
...................................................AGGTCAACAGAAAGATATGATG.................................................................................... 22 0 4 1.00 4 4 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGTG................................................................................. 26 0 4 1.00 4 2 0 0 0 2 0 0
......................................................TCAACAGAAAGATATGATGGTGGAGC............................................................................. 26 0 4 1.00 4 3 1 0 0 0 0 0
.....................................................................................TCGTTCGTGAAGACTTTGATCGAGG............................................... 25 1 3 1.00 3 3 0 0 0 0 0 0
...........TGCCGGAAAGAACCATTGAGGTAATG........................................................................................................................ 26 0 3 1.00 3 1 1 1 0 0 0 0
.GAAGGAGATATGCCGGAAAGAAC..................................................................................................................................... 23 0 4 0.75 3 0 3 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGC.................................................................................. 25 1 4 0.75 3 3 0 0 0 0 0 0
......................................................TCAACAGAAAGATATGATGGCGGAG.............................................................................. 25 1 4 0.75 3 3 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGTA................................................................................. 26 1 4 0.75 3 2 0 1 0 0 0 0
..........................................................................TGGAGCTAGGTTCATTCGTGAAGACTT........................................................ 27 0 4 0.75 3 3 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGCGG................................................................................ 27 1 4 0.75 3 2 0 1 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCGAGGAA............................................. 27 0 3 0.67 2 2 0 0 0 0 0 0
..................................................................................GGTTCATTCGTGAAGACTTTGATC................................................... 24 0 3 0.67 2 0 2 0 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCGAGA............................................... 25 1 3 0.67 2 2 0 0 0 0 0 0
.........TATGCCGGAAAGAACCATTGAGGTAATG........................................................................................................................ 28 0 3 0.67 2 0 2 0 0 0 0 0
.................................................................................AGGTTCATTCGTGAAGACTTTGATC................................................... 25 0 3 0.67 2 2 0 0 0 0 0 0
................................................................................TAGGTTCATTCGTGAAGACTTTGATCG.................................................. 27 0 3 0.67 2 0 2 0 0 0 0 0
.....................................................................................TCGTTCGTGAAGACTTTGATCGA................................................. 23 1 3 0.67 2 2 0 0 0 0 0 0
........................................................................................TTCGTGAAGACTTTGATCGAGGA.............................................. 23 0 3 0.67 2 2 0 0 0 0 0 0
....................................................GGTCAACAGAAAGATATGATGGT.................................................................................. 23 0 4 0.50 2 2 0 0 0 0 0 0
.............................................................AAAGATATGATGGTGGAGCTAGG......................................................................... 23 0 4 0.50 2 2 0 0 0 0 0 0
.......................................................................TGGCGGAGCTAGGTTCATTCGTGA.............................................................. 24 1 4 0.50 2 0 0 0 0 2 0 0
...........TGCCGGAAAGAACCATTGAGGTAAT......................................................................................................................... 25 0 4 0.50 2 1 0 1 0 0 0 0
...........................TGAGGTAATGCAAGTCTTGA.............................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0
...........TGCCGGAAAGAACCATTGAG.............................................................................................................................. 20 0 4 0.50 2 0 2 0 0 0 0 0
......................................................TCAACAGAAAGATATGATGGTG................................................................................. 22 0 4 0.50 2 2 0 0 0 0 0 0
...........TGCCGGAAAGAACCATTGAGGTAA.......................................................................................................................... 24 0 4 0.50 2 1 1 0 0 0 0 0
........................CATTGAGGTAATGCAAGTCTTGA.............................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0
........................CATTGAGGTAATGCAAGTCTTG............................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0
........ATATGCCGGAAAGAACCATTGAGG............................................................................................................................. 24 0 4 0.50 2 1 1 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGA...................................................................................... 21 0 4 0.50 2 0 2 0 0 0 0 0
..........................................................................TGGAGCTAGGTTCATTCGTGAAGACT......................................................... 26 0 4 0.50 2 1 0 1 0 0 0 0
....GGAGATATGCCGGAAAGAACCATTGAG.............................................................................................................................. 27 0 4 0.50 2 0 2 0 0 0 0 0
.........................................................................................TCGTGAAGACTTTGATCGAGGAA............................................. 23 0 3 0.33 1 1 0 0 0 0 0 0
................................................................................................GACTTTGATCGAGGAAAATCTAC...................................... 23 0 3 0.33 1 0 1 0 0 0 0 0
....................................................................................TTCATTCGTGAAGACTTTGATCGAG................................................ 25 0 3 0.33 1 1 0 0 0 0 0 0
......................................................................................CATTCGTGAAGACTTTGATCGAG................................................ 23 0 3 0.33 1 1 0 0 0 0 0 0
......................................................................................CATTCGTGAAGACTTTGATCGAGG............................................... 24 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATC................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
................GAAAGAACCATTGAGGTAATGC....................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0
.............CCGGAAAGAACCATTGAGGTAATG........................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0 0
...........TGCCGGAAAGAACCATTTAGGTAATG........................................................................................................................ 26 1 3 0.33 1 1 0 0 0 0 0 0
................GAAAGAACCATTGAGGTAATGCAAG.................................................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0
......................................................................................CGTTCGTGAAGACTTTGATCGAGG............................................... 24 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................TTCGTGAAGACTTTGAACGAGGAA............................................. 24 1 3 0.33 1 1 0 0 0 0 0 0
................................................................................TAGGTTCGTTCGTGAAGACTTTGATC................................................... 26 1 3 0.33 1 0 0 0 0 1 0 0
................................................................................................GACTTTGATCGAGGAAAA........................................... 18 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................AAGACTTTGATCGAGGAAAATCTA....................................... 24 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................TCATTCGTGAAGACTTTGATCAA................................................. 23 1 3 0.33 1 1 0 0 0 0 0 0
............GCCGGAAAGAACCATTGAGGTAATGCAA..................................................................................................................... 28 0 3 0.33 1 0 0 0 0 1 0 0
..........................................................................................CGTGAAGACTTTGATCGAGG............................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................TTGTTCGTGAAGACTTTGATCGA................................................. 23 2 3 0.33 1 0 0 0 0 0 1 0
........................................................................................TTCGTGAAGACTTTGATCGAGGAAAATC......................................... 28 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................TTCATTCGTGAAGACTTTGATCGAGG............................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................TGAAGACTTTGATCGAGGAAA............................................ 21 0 3 0.33 1 0 1 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGTGGA............................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0
...................................................AGGTCAACAGAAAGATATGATGGGG................................................................................. 25 1 4 0.25 1 1 0 0 0 0 0 0
......................................................TCAACAGAAAGATATGATGGTGGAG.............................................................................. 25 0 4 0.25 1 0 0 1 0 0 0 0
.GAAGGAGATATGCCGGAAAGAAA..................................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0
......................................................TCAACAGAAAGATATGATGGT.................................................................................. 21 0 4 0.25 1 1 0 0 0 0 0 0
................................................................................TAGGTTCATTCGTGAAGACTTTG...................................................... 23 0 4 0.25 1 0 1 0 0 0 0 0
......................................................TCAACAGAAAGATATGATGGTGG................................................................................ 23 0 4 0.25 1 1 0 0 0 0 0 0
...............................................................AGATGTGCTGGTGGAGCTAG.......................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0
.........TATGCCGGAAAGAACCATTGAGGT............................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................TGGTGGAGCTAGGTTCATTCGTGA.............................................................. 24 0 4 0.25 1 1 0 0 0 0 0 0
...........TGCCGGAAAGAACCATTGAGG............................................................................................................................. 21 0 4 0.25 1 0 1 0 0 0 0 0
.........................................................ACAGAAAGATATGATGGCGG................................................................................ 20 1 4 0.25 1 1 0 0 0 0 0 0
..AAGGAGATATGCCGGAAAGAACCAT.................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0
................................................................................TAGGTTCATTCGTGAAGACT......................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................CAGAAAGATATGATGGCGGAGCTAG.......................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0
..........................................................CAGAAAGATATGATGGTGGAGCTA........................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATACGATG.................................................................................... 23 1 4 0.25 1 0 0 1 0 0 0 0
.................................................................................AGGTTCATTCGTGAAGACTTTGAT.................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGA.................................................................................. 25 1 4 0.25 1 0 0 0 1 0 0 0
.........TATGCCGGAAAGAACCATTGAGAA............................................................................................................................ 24 2 4 0.25 1 0 0 0 0 1 0 0
............................................................................GAGCTAGGTTCATTCGTGAAGAC.......................................................... 23 0 4 0.25 1 1 0 0 0 0 0 0
......................................................TCAACAGAAAGATATGATGGGG................................................................................. 22 1 4 0.25 1 1 0 0 0 0 0 0
................................................................................TAGGTTCATTCGTGAAGACTT........................................................ 21 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................CAACAGAAAGATATGATGGTGGAGC............................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGTAA................................................................................ 27 2 4 0.25 1 1 0 0 0 0 0 0
............................................................................GAGCTAGGTTCATTCGTGAAGA........................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCGACAGAAAGATATGATGGT.................................................................................. 25 1 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGGG................................................................................. 26 1 4 0.25 1 1 0 0 0 0 0 0
.GAAGGAGATATGCCGGAAAGAACCAT.................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AGGGTCAACAGAAAGATATGATGG................................................................................... 24 1 4 0.25 1 0 0 0 0 0 1 0
.............................................................AAAGATATGATGGTGGAGCTAGGTT....................................................................... 25 0 4 0.25 1 0 1 0 0 0 0 0
..................................................AAGGTCAACAGATAGATATGATGG................................................................................... 24 1 4 0.25 1 0 0 0 1 0 0 0
....................................................................TGATGGTGGAGCTAGGTTCATTCGT................................................................ 25 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................TCGTGAAGACTTTGA..................................................... 15 0 4 0.25 1 0 1 0 0 0 0 0
......................................................TCAACAGAAAGATATGAT..................................................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGA................................................................................... 24 1 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGCTGGT.................................................................................. 25 1 4 0.25 1 0 0 0 0 1 0 0
...................................................AGGTCAACAGAAAGATATGATGGTGG................................................................................ 26 0 4 0.25 1 1 0 0 0 0 0 0
....................................................GGTCAACAGAAAGATATGATGG................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
.GAAGGAGATATGCCGGAAAGAACC.................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATAC................................................................................... 24 2 4 0.25 1 0 0 0 0 0 1 0
.........TATGCCGGAAAGAACCATTGAGGTAA.......................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0
...................................................AGGTCAACAGAAAGATATGA...................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................CAGAAAGATATGATGGTGGAGCTAGG......................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
.............................................CATTCAAGGTCAACAGAAAGATATGATG.................................................................................... 28 3 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGTCAACAGAAAGATATGATGGCGT................................................................................ 27 2 4 0.25 1 1 0 0 0 0 0 0
...................................................AGGTCAACAGAAAGATATGATGT................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0
..................................................AAGGCCAACAGAAAGTTATGATGG................................................................................... 24 2 5 0.20 1 0 0 0 1 0 0 0
..........................................................................................CTTCAAGACTTTGATCGAGCA.............................................. 21 3 6 0.17 1 1 0 0 0 0 0 0
............................................................GAAAGAAATGATCGAGGAGC............................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GCTTCCTCTATACGGCCTTTCTTGGTAACTCCATTACGTTCAGAACTATTTTCCAGTTGTCTTTCTATACTACCACCTCGATCCAAGTAAGCACTTCTGAAACTAGCTCCTTTTAGATGCNNNTGTNNATCCATCCTACNTGTTATCGAAGNNTATC
************************************......(((((((..((((((..(((((.((.....((((...))))...)).))).))..)))))).)))))))...........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
 SRR902011
testis
 GSM343916
embryo
 M062
head
.......................................................................ACCACCTCGATCCAAGTAAGCACT.............................................................. 24 0 4 19.75 79 78 0 1 0 0 0
.......CTATACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 27 0 4 15.75 63 41 15 6 0 0 1
..................................TACGTTCAGAACTATTTTCCAGTTGT................................................................................................. 26 0 2 15.00 30 10 14 0 5 1 0
...................................ACGTTCAGAACTATTTTCCAGTTGT................................................................................................. 25 0 2 14.50 29 21 6 0 2 0 0
...........ACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 23 0 4 14.25 57 55 1 1 0 0 0
...........ACGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 24 0 4 11.00 44 42 1 0 1 0 0
........................................................................CCACCTCGATCCAAGTAAGCACT.............................................................. 23 0 4 9.00 36 35 0 1 0 0 0
......................................................................TACCACCTCGATCCAAGTAAGCACT.............................................................. 25 0 4 8.75 35 29 6 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTAAGCACT.............................................................. 27 0 4 8.00 32 32 0 0 0 0 0
.....................................................................CTACCACCTCGATCCAAGTAAGCACT.............................................................. 26 0 4 7.25 29 22 1 6 0 0 0
.......................................................................................TAAGCACTTCTGAAACTAGCTCCTT............................................. 25 0 3 7.00 21 17 4 0 0 0 0
.......................................................................................TAAGCACTTCTGAAACTAGCTCCT.............................................. 24 0 3 6.00 18 15 1 1 1 0 0
.........ATACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 25 0 4 5.50 22 18 3 1 0 0 0
....................................CGTTCAGAACTATTTTCCAGTTGT................................................................................................. 24 0 2 5.50 11 8 3 0 0 0 0
..................................................................................CCAAGTAAGCACTTCTGAAACTAGCTCCT.............................................. 29 0 3 5.00 15 12 1 2 0 0 0
..............................................................................CGATCCAAGTAAGCACTTCTGAAACT..................................................... 26 0 4 4.25 17 5 11 1 0 0 0
.......................................................................ACCGCCTCGATCCAAGTAAGCACT.............................................................. 24 1 4 4.25 17 17 0 0 0 0 0
.CTTCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 25 0 4 3.75 15 12 2 0 0 1 0
............CGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 23 0 4 3.75 15 10 0 3 2 0 0
...TCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 23 0 4 3.25 13 13 0 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCACTT............................................................. 25 0 4 3.25 13 13 0 0 0 0 0
..............................................................................CGATCCAAGTAAGCACTTCTGAAA....................................................... 24 0 4 3.25 13 11 2 0 0 0 0
............CGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 22 0 4 3.00 12 9 0 3 0 0 0
.......CTATACGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 28 0 4 3.00 12 3 7 0 2 0 0
..........TACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 24 0 4 2.75 11 11 0 0 0 0 0
..................................................................................CCAAGTAAGCACTTCTGAAACTAGCT................................................. 26 0 3 2.67 8 8 0 0 0 0 0
..TTCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 24 0 4 2.50 10 9 1 0 0 0 0
........TATACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 26 0 4 2.00 8 6 2 0 0 0 0
...............................................ATTTTCCAGTTGTCTTTCTATACT...................................................................................... 24 0 4 2.00 8 0 8 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCACTTCT........................................................... 27 0 4 2.00 8 7 0 1 0 0 0
.........................................................................CACCTCGATCCAAGTAAGCACT.............................................................. 22 0 4 2.00 8 8 0 0 0 0 0
.............GGCCTTTCTTGGTAACTCCAT........................................................................................................................... 21 0 4 2.00 8 8 0 0 0 0 0
........................................................................CCGCCTCGATCCAAGTAAGCACT.............................................................. 23 1 4 1.75 7 5 0 2 0 0 0
.......................................................................................CAAGCACTTCTGAAACTAGCTCCTT............................................. 25 1 3 1.67 5 4 0 1 0 0 0
.............GGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 22 0 4 1.50 6 6 0 0 0 0 0
..................................................................................CCAAGTAAGCACTTCTGAAACTAGCTCC............................................... 28 0 3 1.33 4 2 2 0 0 0 0
GCTTCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 26 0 3 1.33 4 4 0 0 0 0 0
...............................................................................................TCTGAAACTAGCTCCTTTTAGAT....................................... 23 0 3 1.33 4 4 0 0 0 0 0
.....................................................................CTACCACCTCGATCCAAGTAAGCAC............................................................... 25 0 4 1.25 5 5 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTAAGCACTT............................................................. 28 0 4 1.25 5 1 3 1 0 0 0
.....................................................................CTACCACCTCGATCCAAGTAAGCACTT............................................................. 27 0 4 1.25 5 3 0 2 0 0 0
...TCCTCTATACGGCCTTTCTTGGTAACT............................................................................................................................... 27 0 4 1.25 5 4 1 0 0 0 0
........TATACGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 27 0 4 1.25 5 0 5 0 0 0 0
........................................................................CCACCTCGATCCAAGTAAGCACTTCT........................................................... 26 0 4 1.25 5 5 0 0 0 0 0
.........ATACGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 26 0 4 1.25 5 4 0 1 0 0 0
............................................ACTAATTTCCAGTTGTCTTTCTAT......................................................................................... 24 1 4 1.25 5 0 5 0 0 0 0
.......................................................................ACCGCCTCGATCCAAGTAAGCAC............................................................... 23 1 4 1.25 5 5 0 0 0 0 0
..................................TACGTTCAGAACTATTTTCCAGTTG.................................................................................................. 25 0 2 1.00 2 2 0 0 0 0 0
...................................................................TACTACCACCTCGATCCAAGTAAGCACT.............................................................. 28 0 4 1.00 4 3 0 1 0 0 0
....................................CGTTCAGAACTATTTTCCAGTTG.................................................................................................. 23 0 2 1.00 2 2 0 0 0 0 0
........................................................................CCACCTCGATCCAAGTAAGCAC............................................................... 22 0 4 1.00 4 4 0 0 0 0 0
....CCTCTATACGGCCTTTCTTGGTAACT............................................................................................................................... 26 0 4 0.75 3 3 0 0 0 0 0
..............................................................................CGATCCAAGTAAGCACTTCTGAA........................................................ 23 0 4 0.75 3 3 0 0 0 0 0
..........TACGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 25 0 4 0.75 3 1 1 0 0 1 0
.............................................................................TCGATCCAAGTAAGCACTTCTGAAA....................................................... 25 0 4 0.75 3 3 0 0 0 0 0
................................................................CTATACTACCACCTCGATCCAAGTAAG.................................................................. 27 0 4 0.75 3 3 0 0 0 0 0
....CCTCTATACGGCCTTTCTTGGT................................................................................................................................... 22 0 4 0.75 3 3 0 0 0 0 0
................................................................CTATACTACCACCTCGATCCAAGT..................................................................... 24 0 4 0.75 3 1 2 0 0 0 0
......................................................................TACCACCTCGATCCAAGTAAGCAC............................................................... 24 0 4 0.75 3 3 0 0 0 0 0
.....................................................................CTACCGCCTCGATCCAAGTAAGCACT.............................................................. 26 1 4 0.75 3 3 0 0 0 0 0
...................................................................TACTACCACCTCGATCCAAGTAAG.................................................................. 24 0 4 0.75 3 1 0 2 0 0 0
..................................................................ATACTACCACCTCGATCCAAGTAAGCACT.............................................................. 29 0 4 0.75 3 3 0 0 0 0 0
.........................................................................................AGCACTTCTGAAACTAGCTCCT.............................................. 22 0 3 0.67 2 1 1 0 0 0 0
.......................................................................................CAAGCACTTCTGAAACTAGCTCCT.............................................. 24 1 3 0.67 2 2 0 0 0 0 0
..................................................................................CCAAGTAAGCACTTCTGAAACTAGCTC................................................ 27 0 3 0.67 2 2 0 0 0 0 0
.........................................................................................AGCACTTCTGAAACTAGCTCCTTTT........................................... 25 0 3 0.67 2 0 2 0 0 0 0
......................................................................................GTAAGCACTTCTGAAACTAGCTCCTT............................................. 26 0 3 0.67 2 2 0 0 0 0 0
.......................................................................ACCCCCTCGATCCAAGTAAGCACT.............................................................. 24 1 4 0.50 2 2 0 0 0 0 0
.........................................................................CGCCTCGATCCAAGTAAGCACT.............................................................. 22 1 4 0.50 2 2 0 0 0 0 0
...................................GCGTTCAGAACCATTTTCCAGTTGT................................................................................................. 25 2 2 0.50 1 0 1 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCAC............................................................... 23 0 4 0.50 2 2 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTAAGCAC............................................................... 26 0 4 0.50 2 2 0 0 0 0 0
.....CTCTATACGGCCTTTCTTGGT................................................................................................................................... 21 0 4 0.50 2 2 0 0 0 0 0
......................................TTCAGAACTATTTTCCAGTTGT................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0
............CGGCCTTTCTTGGTAACTCCA............................................................................................................................ 21 0 4 0.50 2 2 0 0 0 0 0
..............................................................................CGATCCAAGTAAGCACTTCTGAAAC...................................................... 25 0 4 0.50 2 2 0 0 0 0 0
.....................................GTTCAGAACTATTTTCCAGTTGT................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0
.......................................TCAGAACTATTTTCCAGTTGTCTTT............................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
................................ATTACGTTCAGAACTATTTTCCAGTTGT................................................................................................. 28 0 2 0.50 1 1 0 0 0 0 0
...........................................................................CCTCGATCCAAGTAAGCACT.............................................................. 20 0 4 0.50 2 2 0 0 0 0 0
...........ACGGCCTTTCTTGGTAACTCCATTC......................................................................................................................... 25 1 4 0.50 2 2 0 0 0 0 0
..............GCCTTTCTTGGTAACTCCAT........................................................................................................................... 20 0 4 0.50 2 2 0 0 0 0 0
..............GCCTTTCTTGGTAACTCCATT.......................................................................................................................... 21 0 4 0.50 2 2 0 0 0 0 0
..TTCCTCTATACGGCCTTTCT....................................................................................................................................... 20 0 4 0.50 2 2 0 0 0 0 0
......................................................................TACCACCTCGATCCAAGTAAGCACTTCT........................................................... 28 0 4 0.50 2 2 0 0 0 0 0
...........ACGGTCTTTCTTGGTAACTCCATT.......................................................................................................................... 24 1 4 0.50 2 2 0 0 0 0 0
.........................................................................CACCTCGATCCAAGTAAGCACTTCT........................................................... 25 0 4 0.50 2 1 0 1 0 0 0
......TCTATACGGCCTTTCTTGGTAACT............................................................................................................................... 24 0 4 0.50 2 1 0 1 0 0 0
............CGGTCTTTCTTGGTAACTCCAT........................................................................................................................... 22 1 4 0.50 2 2 0 0 0 0 0
..........................AACTCCATTACGTTCAGAACTATTTTC........................................................................................................ 27 0 2 0.50 1 0 0 0 1 0 0
.....CTCTATACGGCCTTTCTTGGTAACT............................................................................................................................... 25 0 4 0.50 2 1 1 0 0 0 0
.....................................GTTCAGAACTATTTTCCAGTTGTC................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
.............GGCCTTTCTTGGTAACTCCA............................................................................................................................ 20 0 4 0.50 2 2 0 0 0 0 0
...........ACGGCCTTTCTTGGTAACTCCA............................................................................................................................ 22 0 4 0.50 2 2 0 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCA................................................................ 22 0 4 0.50 2 2 0 0 0 0 0
........................................CAGAACTATTTTCCAGTTGTCTTT............................................................................................. 24 0 2 0.50 1 0 0 0 1 0 0
...............................AAAAACGTTCAGAACTATTTTCCAGTTGT................................................................................................. 29 3 2 0.50 1 1 0 0 0 0 0
.......................................TCAGAACTATTTTCCAGTTGT................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
..........................................................................GCCTCGATCCAAGTAAGCACT.............................................................. 21 1 4 0.50 2 2 0 0 0 0 0
.......ATATACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 27 1 4 0.50 2 1 0 0 1 0 0
......................................................................TACCACCTCGATCCAAGTAAGCACTT............................................................. 26 0 4 0.50 2 2 0 0 0 0 0
.......................GGTAACTCCATTACGTTCAGAACT.............................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0
...........................................................................CCTCGATCCAAGTAAGCACTTC............................................................ 22 0 4 0.50 2 2 0 0 0 0 0
........................................................................................AAGCACTTCTGAAACTAGCTCCT.............................................. 23 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................TTCTGAAACTAGCTCCTTTTAGAT....................................... 24 0 3 0.33 1 1 0 0 0 0 0
...........ACTGCCTTTCTTGGTAACTCCATTACGT...................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0 0
..................................................................................CCAAGTAAGCACTTCTGAAACTAG................................................... 24 0 3 0.33 1 1 0 0 0 0 0
..................................................................................CCAAGTAAGCACTTCTGAAACTAGC.................................................. 25 0 3 0.33 1 1 0 0 0 0 0
...................................................................................CAAGTAAGCACTTCTGAAACTAGCTC................................................ 26 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................TAAGCACTTCTGAAACTAGCTCCTTG............................................ 26 1 3 0.33 1 1 0 0 0 0 0
........................................................................................AAGCACTTCTGAAACTAGCTCCTTTT........................................... 26 0 3 0.33 1 1 0 0 0 0 0
GCTTCCTCTATACGGCCTTTCTT...................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................GCACTTCTGAAACTAGCTCCTT............................................. 22 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................TTCTGAAACTAGCTCCTTTTA.......................................... 21 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................TAAGCACTTCTGAAACTAGCTCC............................................... 23 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................CACTTCTGAAACTAGCTCCTTTTAGAT....................................... 27 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................TAAGCACTTCTGAAACTAGCTCCTTTT........................................... 27 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................GCACTTCTGAAACTAGCTCCT.............................................. 21 0 3 0.33 1 1 0 0 0 0 0
...................................................................................AAAGTAAGCACTTCTGAAACTAGCTCC............................................... 27 1 3 0.33 1 1 0 0 0 0 0
...................................................................................CAAGTAAGCACTTCTGAAACTAGCTCC............................................... 27 0 3 0.33 1 1 0 0 0 0 0
.................................................................................................TGAAACTAGCTCCTTTTAGAT....................................... 21 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................AGCACTTCTGAAACTAGCTCCTT............................................. 23 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................TAAGCACTTCTGAAACTAGCTC................................................ 22 0 3 0.33 1 1 0 0 0 0 0
......................................................................................ATAAGCACTTCTGAAACTAGCTCCT.............................................. 25 1 3 0.33 1 1 0 0 0 0 0
......................................................................................GTAAGCACTTCTGAAACTAGCTCCT.............................................. 25 0 3 0.33 1 0 0 0 0 1 0
....................................................................................AAGTAAGCACTTCTGAAACTAGCTCCT.............................................. 27 0 3 0.33 1 1 0 0 0 0 0
.............................................................................................CTTCTGAAACTAGCTCCTTTTAGAT....................................... 25 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................CACTTCTGAAACTAGCTCCTTTTAGA........................................ 26 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................TCTGAAACTAGCTCCTTTTAGATG...................................... 24 0 3 0.33 1 1 0 0 0 0 0
......................................................................................GTAAGCACTTCTGAAACTAGCTCCTTTT........................................... 28 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................AAAGCACTTCTGAAACTAGCTCCTT............................................. 25 1 3 0.33 1 1 0 0 0 0 0
...................................ACGTTCTGAACTAATTTCCAGTTGT................................................................................................. 25 2 3 0.33 1 1 0 0 0 0 0
........AATACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
.........................................................................CACCTCGATCCAAGCAAGCACTT............................................................. 23 1 4 0.25 1 1 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTAAGCA................................................................ 25 0 4 0.25 1 1 0 0 0 0 0
.ATTCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
.......CTATACGGCCTTTCTTGGTAACTCCGT........................................................................................................................... 27 1 4 0.25 1 0 0 1 0 0 0
.........................................................................CACCTCGATCCGAGTAAGCACTTCTG.......................................................... 26 1 4 0.25 1 1 0 0 0 0 0
......TCTATACGGCCTTTCTTGGTAACTCCAT........................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0
..TTCCTCTATACGGCCTTTCTTGGTAACT............................................................................................................................... 28 0 4 0.25 1 0 0 0 0 1 0
.......CTATACGGCCTTTCTTGGTAAC................................................................................................................................ 22 0 4 0.25 1 1 0 0 0 0 0
...TCCTCTATACGGTCTTTCTTGGT................................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
.......CTATACGGCCTTTCTTGGTCACTCAAT........................................................................................................................... 27 2 4 0.25 1 0 0 1 0 0 0
............AGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
..TTCCTCTATACGGCCTTTCTT...................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0
...........................................AACTATTTTCCAGTTGTCTTTCTAT......................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0
.........................................................................CCCCTCGATCCAAGTAAGCACTT............................................................. 23 1 4 0.25 1 1 0 0 0 0 0
..................................................................ATACTACCACCTCGATCCAAGTAAGCAC............................................................... 28 0 4 0.25 1 1 0 0 0 0 0
.........................................................................CACCTCGATCCAAGTAAGCACTTCTGAAA....................................................... 29 0 4 0.25 1 1 0 0 0 0 0
..TTCCTCTATACGGCCTTTCTTGTT................................................................................................................................... 24 1 4 0.25 1 0 0 1 0 0 0
............CAGCCTTGCTTGGTAACTCCATT.......................................................................................................................... 23 2 4 0.25 1 0 0 1 0 0 0
..........................................................................ACCTCGATCCAAGCAAGCACTT............................................................. 22 1 4 0.25 1 0 0 0 1 0 0
.......CTATACGGCCTTCCTTGGTAACTCCAT........................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTAAG.................................................................. 23 0 4 0.25 1 1 0 0 0 0 0
......................................................................TACCACCTCGATCCAAGTAAGC................................................................. 22 0 4 0.25 1 1 0 0 0 0 0
......................................................................TACCACCTCGATCCCAGTAAGCACT.............................................................. 25 1 4 0.25 1 0 0 1 0 0 0
......................................................................TACCACCTCGATCCAAGTAAGTACT.............................................................. 25 1 4 0.25 1 0 1 0 0 0 0
....................................................................ACTCCCACCTCGATCCAAGTAAGCACT.............................................................. 27 1 4 0.25 1 1 0 0 0 0 0
................................................................CTATACTACCACCTCGATCCAAGTAA................................................................... 26 0 4 0.25 1 1 0 0 0 0 0
................................................................CTATACTACCACCTCGATCCAAG...................................................................... 23 0 4 0.25 1 0 0 1 0 0 0
......TCTATACGGCCTTTCTTGGT................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0
........TATACGGTCTTTCTTGGTAACTCCAT........................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
..................................................................ATACTACCACCTCGATCCAAGT..................................................................... 22 0 4 0.25 1 1 0 0 0 0 0
............................................................CTTTCTATACTACCACCTCGAT........................................................................... 22 0 4 0.25 1 1 0 0 0 0 0
...........ACGGCCTTTCTTGGTAACTCCATTA......................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0
...........................................................CCTTTCTATACTACCACCTCGATCCAAG...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
ACTTCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
.............................................................TTTCTATACTACCACCTCGATCCAAGT..................................................................... 27 0 4 0.25 1 1 0 0 0 0 0
...TCCTCTATACGGCCTTTCTTG..................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0
...CCCTCTATACGGCCTTTCTTGGT................................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
..................................................................ATACTACCACCTCGATCCAAGTAAG.................................................................. 25 0 4 0.25 1 1 0 0 0 0 0
.........................................................................CACCTCGATCCAAGTAAGTACT.............................................................. 22 1 4 0.25 1 0 0 1 0 0 0
...............................................................................GATCCAAGTAAGCACTTCTGAAA....................................................... 23 0 4 0.25 1 1 0 0 0 0 0
.......................................................................ACCCCCTCGATCCAAGTAAGCACTTCT........................................................... 27 1 4 0.25 1 1 0 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCACTTC............................................................ 26 0 4 0.25 1 1 0 0 0 0 0
......TCTATACGGCCTTTCTTGGTAACTCCATT.......................................................................................................................... 29 0 4 0.25 1 0 1 0 0 0 0
.......CTATACGGCCTTTCTTGGTAACTCCA............................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0 0
.......CTATACGGCCTTTCTTGGTAACT............................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0
..............................................................................CGATCCAAGTAAGCACTT............................................................. 18 0 4 0.25 1 0 1 0 0 0 0
....CCTCTATACGGCCTTTCTTGGTAA................................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0 0
...................................................................AACTACCACCTCGATCCAAGTAAGCACT.............................................................. 28 1 4 0.25 1 1 0 0 0 0 0
...........ACGGCCTTTCTTGGTAACTC.............................................................................................................................. 20 0 4 0.25 1 1 0 0 0 0 0
..................................................TTCCAGTTGTCTTTCTATACTACCACCT............................................................................... 28 0 4 0.25 1 1 0 0 0 0 0
...................................................................TACTACCACCTCGATCCAAGTAAGCAC............................................................... 27 0 4 0.25 1 1 0 0 0 0 0
......................................................................CACCGCCTCGATCCAAGTAAGCACT.............................................................. 25 2 4 0.25 1 1 0 0 0 0 0
.......CTATACGGCCTTTCTTGGTAACCCCATT.......................................................................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
..............................................................TTCTATACTACCACCTCGATCCAAGT..................................................................... 26 0 4 0.25 1 1 0 0 0 0 0
.............................................................................TCGATCCAAGTAAGCACTTCT........................................................... 21 0 4 0.25 1 1 0 0 0 0 0
...........ACGGCCTTTCCTGGTAACTCCATT.......................................................................................................................... 24 1 4 0.25 1 1 0 0 0 0 0
.........................................................................CCCCTCGATCCAAGTAAGCACT.............................................................. 22 1 4 0.25 1 1 0 0 0 0 0
.....CTCTATACGGCCCTTCTTGGTAACT............................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
.......................................................................ACCACCTCGATCCAAGCAAGCACT.............................................................. 24 1 4 0.25 1 1 0 0 0 0 0
.......................................................................ACCGCCTCGATCCAAGTAAGCACTTC............................................................ 26 1 4 0.25 1 1 0 0 0 0 0
............CGGCCTTTCTTGGTAACTCCAGT.......................................................................................................................... 23 1 4 0.25 1 0 0 1 0 0 0
..........TACGGCCTTTCTTGGTAACTCCA............................................................................................................................ 23 0 4 0.25 1 1 0 0 0 0 0
...............................................................TCTATACTACCACCTCGATCCAAG...................................................................... 24 0 4 0.25 1 1 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGCAAGCACT.............................................................. 27 1 4 0.25 1 1 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTAAGC................................................................. 24 0 4 0.25 1 1 0 0 0 0 0
.....................................................................CTACCCCCTCGATCCAAGTAAGCACT.............................................................. 26 1 4 0.25 1 1 0 0 0 0 0
.....................................................................CTACCACATCGATCCAAGTAAG.................................................................. 22 1 4 0.25 1 0 0 1 0 0 0
.........................................................................CACCTCGATCCAAGTAAGCACTTCTG.......................................................... 26 0 4 0.25 1 1 0 0 0 0 0
.....................................................................CTACCACCTCGATCCAAGTAAGCACTTCT........................................................... 29 0 4 0.25 1 0 0 1 0 0 0
.......................................................................ACCACCTCGATCCAAGCAAGCACTT............................................................. 25 1 4 0.25 1 1 0 0 0 0 0
.................................................................TATACTACCGCCTCGATCCAAGTAA................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
.....CTCTATACGGCCTTTCTTGGTAACTT.............................................................................................................................. 26 1 4 0.25 1 1 0 0 0 0 0
.......CTATACTGCCTTTCTTGGTAACTCCAT........................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0
...................................................................TACTACCGCCTCGATCCAAGTAAGC................................................................. 25 1 4 0.25 1 1 0 0 0 0 0
........TATACGGCCTTCCTTGGTAACTCCAT........................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
..........................................................................ACCTCGATCCAAGCAAGCACTTCT........................................................... 24 1 4 0.25 1 1 0 0 0 0 0
............................................................................CTCGATCCAAGTAAGCACTTCTGAA........................................................ 25 0 4 0.25 1 0 0 0 1 0 0
......................................................................TACCACCTCGATCCAAGTAAGCA................................................................ 23 0 4 0.25 1 0 1 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCACTG............................................................. 25 1 4 0.25 1 1 0 0 0 0 0
........................................................................CCCCCTCGATCCAAGTAAGCACT.............................................................. 23 1 4 0.25 1 1 0 0 0 0 0
....................................................................ACTACCGCCTCGATCCAAGTAAGC................................................................. 24 1 4 0.25 1 1 0 0 0 0 0
...............................................................TCTATACTACCCCCTCGATCCAAGTAA................................................................... 27 1 4 0.25 1 1 0 0 0 0 0
.................................................................AATACTACCACCTCGATCCAAGTAA................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
...........ACGGTCTTTCTTGGTAACTCCAT........................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
...............................................................TCTATACTACCACCTCGATCCAAGT..................................................................... 25 0 4 0.25 1 1 0 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAGCACC.............................................................. 24 1 4 0.25 1 1 0 0 0 0 0
...TCCTCTATACGGTCTTTCTTGGTAACT............................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0
.........................................................TGTCTTTCTATACTACCACCTCGAT........................................................................... 25 0 4 0.25 1 1 0 0 0 0 0
..........................................................................ACCTCGATCCAAGTAAGCACTT............................................................. 22 0 4 0.25 1 1 0 0 0 0 0
.......................................................................ACCACCTCGATCCAAGTAAG.................................................................. 20 0 4 0.25 1 1 0 0 0 0 0
.........................................................................CACCTCGATCCAAGTAAGCACTTC............................................................ 24 0 4 0.25 1 1 0 0 0 0 0
.......CTATACGGCCTTTCTTGGTAACTC.............................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0 0
....................................................................ACTACCACCTCGATCCAAGTA.................................................................... 21 0 4 0.25 1 1 0 0 0 0 0
........................................................................CCACCTCGATCCAAGTAAGCACTCCT........................................................... 26 1 4 0.25 1 0 0 1 0 0 0
...........................................................................CCTCGATCCAAGTAAGCACTTCTGA......................................................... 25 0 4 0.25 1 1 0 0 0 0 0
.....CTCTATACGGCCTTTCTTGGTAA................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0
....CCTCTATACGGCCTTTCTTGGTAAC................................................................................................................................ 25 0 4 0.25 1 1 0 0 0 0 0
.............AGCCTTTCTTGGTAACTCCAT........................................................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
......................................................................GACCACCTCGATCCAAGTAAGCACTTCT........................................................... 28 1 4 0.25 1 1 0 0 0 0 0
.............AAACTTTCTTGGTAACTCCAT........................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_2928:779-935 + dps_77 CGAA----GGAGATATGCCGGAAAGAACCATTGAGGTAATGCAAGTCTTGATAAAAGGTCAACAGAAAGATATGATGGTGGAGCTAGGTTCATTCGTGAAGACTTTGATCGAGGAAAATCTACGNNNACANNTAGGTAGGATGNACAATAGCTTCNNATAG
droPer2 scaffold_10:194388-194543 + CGAA----GGAGATATGCCGGAAAGAACCATTGAGGTAATGCAAGCCTTGATAAAAGGTCAACAGAAAGACATGATGGTGGAGCTAGGTTCATTCGTGAAGACTTTGATCGAGGAAAATCTACGCGAACAATTAGGTAGGATG-ACAATAGCTTCAGATAG
droVir3 scaffold_5965:3987-3989 + GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12394:6744-6785 + CGAGATCAGAAAATATTGTAGAGAGAGGCA---AGGTAGTGCAAG--------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453079:10580-10727 + AGAA----GGAGATGAGAGCGAGAATACTTCAAACGTTATCCATGCTATTATAAAAAGCCAGCAAAAAGACATGATGACAGAACTTAGTTCGTTCGTAAAAAGGACTATAGAAGAGAGTCTTAGAGCACAACTAGGAAGACTT-ACATTAGCT--------
droRho1 scf7180000760612:805-939 + AGAA----GGAGATGAGAGCGAGAATACTTCAAACGTTATCCATGCTATTATAAAAAGCCAGCAAAAAGACATGATGACAGAACTTAGTTCATTCGTAAAAAGGACTATAGAAGAGAGTCTTAGAGCACAACTAGGAAG----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGAA----GGAGATATGCCGGAAAGAACCATTGAGGTAATGCAAGTCTTGATAAAAGGTCAACAGAAAGATATGATGGTGGAGCTAGGTTCATTCGTGAAGACTTTGATCGAGGAAAATCTACGNNNACANNTAGGTAGGATGNACAATAGCTTCNNATAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................AAGGTCAACAGAAAGATATGATGG...................................................................................24429.25117088201108620
......................................................AAGGTCAACAGAAAGATATGATG....................................................................................23410.504202900214600
.........................................................................................TCATTCGTGAAGACTTTGATCGAGG...............................................25310.003003000000000
.........................................................................................TCATTCGTGAAGACTTTGATCGA.................................................2335.671701500000200
....................................................................................TAGGTTCATTCGTGAAGACTTTGATC...................................................2634.67140400003700
.............TATGCCGGAAAGAACCATTGAGG.............................................................................................................................2343.25130300100900
......................................................AAGGTCAACAGAAAGATATGATGGT..................................................................................2543.00120900111000
.......................................................AGGTCAACAGAAAGATATGATGG...................................................................................2342.2590900000000
.........................................................................................TCATTCGTGAAGACTTTGATCG..................................................2232.0060600000000
.........................................................................................TCATTCGTGAAGACTTTGATCGAG................................................2432.0060500000010
......................................................AAGGTCAACAGAAAGATATGATGGTGG................................................................................2741.7570700000000
......................................................AAGGTCAACAGAAAGATATGAT.....................................................................................2241.5060200100300
.........................................................................................TCATTCGTGAAGACTTTGATCGAGGA..............................................2631.3340400000000
................................................................................................TGAAGACTTTGATCGAGGAAAATC.........................................2431.3340000000130
...............TGCCGGAAAGAACCATTGAGGTAATGC.......................................................................................................................2731.3340200001010
.................CCGGAAAGAACCATTGAGGTAATGC.......................................................................................................................2531.0030100000200
.......................................................AGGTCAACAGAAAGATATGATG....................................................................................2241.0040400000000
......................................................AAGGTCAACAGAAAGATATGATGGTG.................................................................................2641.0040200000020
..........................................................TCAACAGAAAGATATGATGGTGGAGC.............................................................................2641.0040300000100
...............TGCCGGAAAGAACCATTGAGGTAATG........................................................................................................................2631.0030100001100
.GAA----GGAGATATGCCGGAAAGAAC.....................................................................................................................................2340.7530000000300
......................................................AAGGTCAACAGAAAGATATGATGGC..................................................................................2540.7530300000000
......................................................AAGGTCAACAGAAAGATATGATGGTA.................................................................................2640.7530200001000
..............................................................................TGGAGCTAGGTTCATTCGTGAAGACTT........................................................2740.7530300000000
.........................................................................................TCATTCGTGAAGACTTTGATCGAGGAA.............................................2730.6720200000000
......................................................................................GGTTCATTCGTGAAGACTTTGATC...................................................2430.6720000000200
.........................................................................................TCATTCGTGAAGACTTTGATCGAGA...............................................2530.6720200000000
.............TATGCCGGAAAGAACCATTGAGGTAATG........................................................................................................................2830.6720000000200
.....................................................................................AGGTTCATTCGTGAAGACTTTGATC...................................................2530.6720200000000
....................................................................................TAGGTTCATTCGTGAAGACTTTGATCG..................................................2730.6720000000200
............................................................................................TTCGTGAAGACTTTGATCGAGGA..............................................2330.6720200000000
........................................................GGTCAACAGAAAGATATGATGGT..................................................................................2340.5020200000000
.................................................................AAAGATATGATGGTGGAGCTAGG.........................................................................2340.5020200000000
...............TGCCGGAAAGAACCATTGAGGTAAT.........................................................................................................................2540.5020100001000
...............................TGAGGTAATGCAAGTCTTGA..............................................................................................................2020.5010100000000
...............TGCCGGAAAGAACCATTGAG..............................................................................................................................2040.5020000000200
..........................................................TCAACAGAAAGATATGATGGTG.................................................................................2240.5020200000000
...............TGCCGGAAAGAACCATTGAGGTAA..........................................................................................................................2440.5020100000100
............................CATTGAGGTAATGCAAGTCTTGA..............................................................................................................2320.5010100000000
............................CATTGAGGTAATGCAAGTCTTG...............................................................................................................2220.5010100000000
............ATATGCCGGAAAGAACCATTGAGG.............................................................................................................................2440.5020100000100
......................................................AAGGTCAACAGAAAGATATGA......................................................................................2140.5020000000200
..............................................................................TGGAGCTAGGTTCATTCGTGAAGACT.........................................................2640.5020100001000
........GGAGATATGCCGGAAAGAACCATTGAG..............................................................................................................................2740.5020000000200
.............................................................................................TCGTGAAGACTTTGATCGAGGAA.............................................2330.3310100000000
....................................................................................................GACTTTGATCGAGGAAAATCTAC......................................2330.3310000000100
........................................................................................TTCATTCGTGAAGACTTTGATCGAG................................................2530.3310100000000
..........................................................................................CATTCGTGAAGACTTTGATCGAG................................................2330.3310100000000
..........................................................................................CATTCGTGAAGACTTTGATCGAGG...............................................2430.3310100000000
.........................................................................................TCATTCGTGAAGACTTTGATC...................................................2130.3310100000000
....................GAAAGAACCATTGAGGTAATGC.......................................................................................................................2230.3310100000000
.................CCGGAAAGAACCATTGAGGTAATG........................................................................................................................2430.3310100000000
....................GAAAGAACCATTGAGGTAATGCAAG....................................................................................................................2530.3310000000010
....................................................................................................GACTTTGATCGAGGAAAA...........................................1830.3310100000000
..................................................................................................AAGACTTTGATCGAGGAAAATCTA.......................................2430.3310100000000
................GCCGGAAAGAACCATTGAGGTAATGCAA.....................................................................................................................2830.3310000000010
..............................................................................................CGTGAAGACTTTGATCGAGG...............................................2030.3310100000000
............................................................................................TTCGTGAAGACTTTGATCGAGGAAAATC.........................................2830.3310100000000
........................................................................................TTCATTCGTGAAGACTTTGATCGAGG...............................................2630.3310100000000
................................................................................................TGAAGACTTTGATCGAGGAAA............................................2130.3310000000100
......................................................AAGGTCAACAGAAAGATATGATGGTGGA...............................................................................2840.2510100000000
..........................................................TCAACAGAAAGATATGATGGTGGAG..............................................................................2540.2510000001000
.GAA----GGAGATATGCCGGAAAGAAA.....................................................................................................................................2340.2510100000000
..........................................................TCAACAGAAAGATATGATGGT..................................................................................2140.2510100000000
....................................................................................TAGGTTCATTCGTGAAGACTTTG......................................................2340.2510000000100
..........................................................TCAACAGAAAGATATGATGGTGG................................................................................2340.2510100000000
.............TATGCCGGAAAGAACCATTGAGGT............................................................................................................................2440.2510100000000
...........................................................................TGGTGGAGCTAGGTTCATTCGTGA..............................................................2440.2510100000000
...............TGCCGGAAAGAACCATTGAGG.............................................................................................................................2140.2510000000100
..AA----GGAGATATGCCGGAAAGAACCAT..................................................................................................................................2540.2510100000000
....................................................................................TAGGTTCATTCGTGAAGACT.........................................................2040.2510100000000
..............................................................CAGAAAGATATGATGGTGGAGCTA...........................................................................2440.2510100000000
.....................................................................................AGGTTCATTCGTGAAGACTTTGAT....................................................2440.2510100000000
......................................................AAGGTCAACAGAAAGATATGATGGA..................................................................................2540.2510000100000
.............TATGCCGGAAAGAACCATTGAGAA............................................................................................................................2440.2510000000010
................................................................................GAGCTAGGTTCATTCGTGAAGAC..........................................................2340.2510100000000
....................................................................................TAGGTTCATTCGTGAAGACTT........................................................2140.2510100000000
...........................................................CAACAGAAAGATATGATGGTGGAGC.............................................................................2540.2510100000000
......................................................AAGGTCAACAGAAAGATATGATGGTAA................................................................................2740.2510100000000
................................................................................GAGCTAGGTTCATTCGTGAAGA...........................................................2240.2510100000000
.GAA----GGAGATATGCCGGAAAGAACCAT..................................................................................................................................2640.2510100000000
.................................................................AAAGATATGATGGTGGAGCTAGGTT.......................................................................2540.2510000000100
........................................................................TGATGGTGGAGCTAGGTTCATTCGT................................................................2540.2510100000000
.............................................................................................TCGTGAAGACTTTGA.....................................................1540.2510000000100
..........................................................TCAACAGAAAGATATGAT.....................................................................................1840.2510100000000
......................................................AAGGTCAACAGAAAGATATGATGA...................................................................................2440.2510100000000
.......................................................AGGTCAACAGAAAGATATGATGGTGG................................................................................2640.2510100000000
........................................................GGTCAACAGAAAGATATGATGG...................................................................................2240.2510100000000
.GAA----GGAGATATGCCGGAAAGAACC....................................................................................................................................2440.2510100000000
......................................................AAGGTCAACAGAAAGATATGATAC...................................................................................2440.2510010000000
.............TATGCCGGAAAGAACCATTGAGGTAA..........................................................................................................................2640.2510000000100
.......................................................AGGTCAACAGAAAGATATGA......................................................................................2040.2510100000000
..............................................................CAGAAAGATATGATGGTGGAGCTAGG.........................................................................2640.2510100000000
.......................................................AGGTCAACAGAAAGATATGATGT...................................................................................2340.2510100000000
droPer2
CGAA----GGAGATATGCCGGAAAGAACCATTGAGGTAATGCAAGCCTTGATAAAAGGTCAACAGAAAGACATGATGGTGGAGCTAGGTTCATTCGTGAAGACTTTGATCGAGGAAAATCTACGCGAACAATTAGGTAGGATG-ACAATAGCTTCAGATAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................TCAACAGAAAGACATGATGGTGGA...............................................................................2440.251010000
..................................................................................GCTAGGTTCATTCGTGAAGACTTTG......................................................25160.193020001
..........................ACCATTGAGGTAATGCAAGCCTTGATA............................................................................................................2780.131010000
.........................................................................GATGGTGGAGCTAGGTTCATTC..................................................................22160.132000002
........................................................................................................................TACGCGAACAATTAGGTAGGATG-ACA..............26110.091010000
.GAA----GGAGATATGCCGGAAAGAAC.....................................................................................................................................23110.091010000
...............TGCCGGAAAGAACCATTGAGGTAATGC.......................................................................................................................27110.091010000
..................................................................................GCTAGGTTCATTCGTGAAGACTTT.......................................................24160.061000001
..................................................................................................AAGACTTTGATCGAGGAAAATCTA.......................................24170.061010000
droVir3
GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droAna3
CGAGATCAGAAAATATTGTAGAGAGAGGCA---AGGTAGTGCAAG--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droFic1
AGAA----GGAGATGAGAGCGAGAATACTTCAAACGTTATCCATGCTATTATAAAAAGCCAGCAAAAAGACATGATGACAGAACTTAGTTCGTTCGTAAAAAGGACTATAGAAGAGAGTCTTAGAGCACAACTAGGAAGACTT-ACATTAGCT--------SizeHit CountTotal NormTotal
No Reads
droRho1
AGAA----GGAGATGAGAGCGAGAATACTTCAAACGTTATCCATGCTATTATAAAAAGCCAGCAAAAAGACATGATGACAGAACTTAGTTCATTCGTAAAAAGGACTATAGAAGAGAGTCTTAGAGCACAACTAGGAAG----------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:30 PM