ID:

dps_765

 Coordinate:

2:24101357-24101507 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.6 -40.6 -40.6

Flybase annnotation

exon [Dpse\GA27458:4]; CDS [Dpse\GA27458-cds]; intron [Dpse\GA27458-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
mature
  1. Unknown_group_330:6005-6027 +
  2. Unknown_group_10:71745-71767 +
  3. XL_group1e:1622667-1622689 +
  4. Unknown_group_35:37711-37733 +
  5. Unknown_group_48:28637-28659 +
  6. 2:11799751-11799773 +
  7. dps_765  2:24101479-24101501 +
  8. XL_group3a:2122104-2122126 +
  9. 4_group1:107953-107975 +
  10. 4_group1:1874913-1874935 +
  11. Unknown_group_602:10485-10507 +
  12. Unknown_group_115:9192-9214 +
  13. 4_group4:1150690-1150712 +
  14. Unknown_singleton_1692:1064-1086 +
  15. Unknown_group_399:1385-1407 +
  16. Unknown_group_197:3292-3314 +
  17. Unknown_singleton_3475:1749-1771 +
  18. Unknown_singleton_3287:840-862 +
  19. Unknown_singleton_175:1265-1287 +
  20. Unknown_singleton_1550:2397-2419 +
  21. Unknown_group_144:53034-53056 +
  22. Unknown_group_8:194219-194241 +
  23. Unknown_group_46:6705-6727 +
  24. 3:1879848-1879870 +
  25. 2:4411417-4411439 +
  26. 2:9063292-9063314 +
  27. 2:23940003-23940025 +
  28. XL_group3a:1825054-1825076 +
  29. 4_group3:10618322-10618344 +
  30. Unknown_group_282:9807-9829 +
  31. Unknown_group_845:429-451 +
  32. XR_group6:4048110-4048132 +
  33. Unknown_singleton_727:1226-1248 +
  34. Unknown_group_76:11131-11153 +
  35. Unknown_group_556:2286-2308 +
  36. Unknown_singleton_624:248-270 +
  37. Unknown_singleton_3571:2154-2176 +
  38. Unknown_singleton_1046:720-742 +
  39. Unknown_singleton_1980:65-87 +
  40. Unknown_group_87:645-667 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAGCGGCAAGAGCAGTCTCTCCGAGGACTACGACAACAACAGTGTCATGGTGAGTACTCCACTAACCGCTGAGATGAACCCGAACTACGGGGTCAATGGCAAAGGCTCTGACAATCGCATCATTAGCACAATTTCCAGTCTCGACGCGAGCTTTTATTTTTATACCCGATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATAGTTTCCGACC
**************************************************(((((.(((.........(((((((((..((((.....))))((((..(((....))).)))).....)))).))))).........)))))).))...........((..(((((((((((((((...)))))))).)))))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 GSM343916
embryo
 V112
male body		 M059
embryo
 GSM444067
head
 SRR902012
CNS imaginal disc
 SRR902010
ovaries
 M062
head
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTG............................ 23 0 20 61.30 1226 1226 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGT............................. 22 0 20 1.65 33 0 0 33 0 0 0 0 0 0
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGAT................................. 18 0 20 1.45 29 0 29 0 0 0 0 0 0 0
..................................................GTGAGTACTTAACTACCCG...................................................................................................................................................................................... 19 3 9 1.44 13 0 13 0 0 0 0 0 0 0
...................CTCCGAGGACTACGACAACA.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......CAAGAGCAGTCTCTCCGAGGACTACGAC........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................CTACGACAACAACAGTGTCATGAGC...................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................ACTACGACAACAACAGTGT............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........AGCAGTCTCTCCGAGGACT............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................CTCTCCGAGGACTACGACAACAACAGTGT............................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............GCAGTCTCTCCGAGGACTACGAC........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTAA......................... 26 0 20 0.90 18 0 0 0 18 0 0 0 0 0
............................................................................................................................................................................................................TGGTAAAAGTGGATGTGTG............................ 19 0 20 0.90 18 18 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTAACG....................... 27 0 20 0.65 13 0 13 0 0 0 0 0 0 0
.........................................................................GATGAACCAGCACTACGGG............................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGT........................... 22 0 20 0.50 10 0 0 0 10 0 0 0 0 0
......................................................................................TACGGGGTCGATGGCCAAG.................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGATTTGTGGTAAAAGTGGAT................................. 21 0 20 0.45 9 0 9 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGT..................................... 21 0 20 0.40 8 0 0 0 8 0 0 0 0 0
..........................................................................................................................................................................................................TGTGGTAAAAGTGGATGT............................... 18 0 20 0.35 7 0 7 0 0 0 0 0 0 0
...................................................................................................GTAAAGGTACTGACAATCGC.................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................AAAAGTGGATGTGTGTAACG....................... 20 0 20 0.30 6 0 0 0 6 0 0 0 0 0
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGT........................... 24 0 20 0.25 5 0 0 5 0 0 0 0 0 0
...................................................................................................................................................................................................................AGTGGATGTGTGTAACGTCC.................... 20 0 20 0.20 4 0 0 0 0 0 4 0 0 0
..............................................................................................................................................................................................................GTAAAAGTGGATGTGTGTAAC........................ 21 0 20 0.20 4 0 0 0 4 0 0 0 0 0
.........................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTAACGT...................... 28 0 20 0.20 4 0 0 0 4 0 0 0 0 0
....................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGG................................... 20 0 20 0.15 3 0 3 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGGA.................................. 21 0 20 0.15 3 0 0 0 0 0 0 3 0 0
...................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATG................................ 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGGA.......................... 25 1 20 0.15 3 0 0 0 0 0 0 0 3 0
........................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG................................ 19 0 20 0.15 3 0 0 0 0 3 0 0 0 0
.....................................................................................TTACGGGGTCGATGGCCAAG.................................................................................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTCCAGAAGGAATAGTTTCCG... 21 0 9 0.11 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................CTCAAAATGAGTATTGGGGTATA........................................................ 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................................TTATACCCGATACTCAAAAT....................................................................... 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACG....................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGA............................. 20 1 20 0.10 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGTGGATGTGTGTAACGTCCA................... 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAGATTTGTGGTAAAAGTG.................................... 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................TTATTTTTATACCCGATACT............................................................................. 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0
........................................................................CGATGAACCAGCACTACGG................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................GGTAAAAGTGGATGGGTGTA.......................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GTATTGGGGTATATTAGATTTGTGGTA.......................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAACGTCCAGAAGGAAAAGTT....... 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................GATGTGTGTAACGTCCAGAAGG.............. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TACTCAAAATGAGTATTGGGGT........................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACGT...................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................TTTTATACCCGATACTCAAAATG...................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ATGTGTGTAACGTCTAGAAGGAATA.......... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................GATTTGTGGTAAAAGTGGAT................................. 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACG....................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................TTATTGTTATACCCGATACTCAAAA........................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGG.............. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGTCGCCGTTCTCGTCAGAGAGGCTCCTGATGCTGTTGTTGTCACAGTACCACTCATGAGGTGATTGGCGACTCTACTTGGGCTTGATGCCCCAGTTACCGTTTCCGAGACTGTTAGCGTAGTAATCGTGTTAAAGGTCAGAGCTGCGCTCGAAAATAAAAATATGGGCTATGAGTTTTACTCATAACCCCATATAATCTAAACACCATTTTCACCTACACACATTGCAGGTCTTCCTTATCAAAGGCTGG
**************************************************(((((.(((.........(((((((((..((((.....))))((((..(((....))).)))).....)))).))))).........)))))).))...........((..(((((((((((((((...)))))))).)))))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902011
testis
 SRR902010
ovaries
 GSM444067
head
...................................................................................................................................................................ATGGGCTATGAGTTTTACT..................................................................... 19 0 20 0.60 12 12 0 0 0 0
..........................................................................................................................................................................................................................CACACATTGCAGGTCTTCCTTATC......... 24 0 10 0.60 6 1 5 0 0 0
...........................................................................................................................................................ATAAAAATATGGGCTATGAGTT.......................................................................... 22 0 20 0.50 10 10 0 0 0 0
.................................................................................................................................................................................................................................TGCAGGTCTTCCTTATCAAAGGCT.. 24 0 9 0.33 3 3 0 0 0 0
........................................................................................................................................................AAAATAAAAATATGGGCTATGAGT........................................................................... 24 0 6 0.33 2 2 0 0 0 0
.....................................................................................................................................................................................TCATAACCCCATATAATCTAAACACCAT.......................................... 28 0 20 0.25 5 5 0 0 0 0
...................................................................................................................................................................................................................TCACCTACACACATTGCAGGTCTTCCTT............ 28 0 20 0.25 5 0 0 0 5 0
..............................................................................................................................................................................GTTTTACTCATAACCCCATAT........................................................ 21 0 20 0.25 5 5 0 0 0 0
.....................................................................................GATGCCCCTCTTACGGTTTCC................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1
.......................................................................................................................................................GAAATTAAAAATATGGGCTATGAGT........................................................................... 25 1 11 0.18 2 0 0 2 0 0
........................................................................................................................................................AAAATAAAAATATGGGCTATGAGTT.......................................................................... 25 0 6 0.17 1 1 0 0 0 0
.........................................................................................................................................................AAATAAAAATATGGGCTATGAGTT.......................................................................... 24 0 18 0.17 3 3 0 0 0 0
.........................................................................................................................................................AAATAAAAATATGGGCTATGAGT........................................................................... 23 0 18 0.11 2 2 0 0 0 0
...................................................................................................................................................................................................................................CAGGTCTTCCTTATCAAAGGC... 21 0 9 0.11 1 0 1 0 0 0
...............................................................................................................................................................................................................................ATTGCAGGTCTTCCTTATCAAAGGCT.. 26 0 9 0.11 1 0 0 1 0 0
......................................................................................................................................................CGAAAACAAAAATATGGGCTATGAGTT.......................................................................... 27 1 9 0.11 1 0 1 0 0 0
.........................................................................................................................................................................................AACCCCATATAATCTAAACACCATTTT....................................... 27 0 20 0.10 2 0 0 0 2 0
.........................................................................................................................................................................................................................ACACACATTGCAGGTCTTCCTTATC......... 25 0 10 0.10 1 0 1 0 0 0
...........................................................................................................................................................................................................................ACACATTGCAGGTCTTCCTTATC......... 23 0 10 0.10 1 0 1 0 0 0
.......................................................................................................................................................................................................................CTACACACATTGCAGGTCTTCCTTATC......... 27 0 10 0.10 1 0 1 0 0 0
....................................................................................................................................................................TGGGCTATGAGTTTTACTC.................................................................... 19 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................................................AAAAATATGGGCTATGAGTTTTACT..................................................................... 25 0 20 0.10 2 0 0 2 0 0
........................................................................................................................................................................................................................TACACACATTGCAGGTCTTCCTTATC......... 26 0 10 0.10 1 0 1 0 0 0
....................................................................................................................................AAAGTTCAGAGTTGCGCTTG................................................................................................... 20 3 11 0.09 1 1 0 0 0 0
...........................................................................................................................................................................................................................AGACATTGCAGGTCTTCCTTATC......... 23 1 12 0.08 1 0 1 0 0 0
...........................................................................................................................................................................................................................ACACATTGCAGGTGTTCCTTATC......... 23 1 15 0.07 1 0 1 0 0 0
..........................................................................................................................................................................................................................AACACATTGCAGGTCTTCCTTATC......... 24 1 15 0.07 1 0 1 0 0 0
.........................................................................................................................................................................................................................ACACACATTGCAGGTCTTCCTTATA......... 25 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................TCACCTACACACATTGCAGGT................... 21 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................................ACACATTGCAGGTCTTCCTT............ 20 0 20 0.05 1 0 0 0 0 1
.............................................................................................................................................................................................CCATATAATCTAAACACCATTTTCAC.................................... 26 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:24101307-24101557 + dps_765 CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAACCGCTGAGATGAACCCGAACTA--CG-G------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCCA---------GTCTC----------------------------------------------------------GACGCGAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATAGTTTCCGACC
droPer2 scaffold_3:6877739-6877988 + dpe_1416 CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAGCCGCTGAGATGAGCCCAAAACA--CGGG------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCTA---------GTTTC----------------------------------------------------------GACGCTAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATCGTTTCCGA--
droWil2 scf2_1100000004911:17740-17938 - TCAAC----AGCAGGAGCAATATTTTACCTCACGAGGA----GACAAC-------TCAGAGTTAGTCCC-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACCACA--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------AGGACACCGT--T------AATTTTTATACCC--TTGCA--------------------------------AAAAGGGTATATTAATTTTGGTCAG-------AAG-TGTGCAACG-CATAGAAGGAAGCATTTCCGACC
droVir3 scaffold_13324:2182367-2182576 + GTGAT----T--------------------------------------------------------TCT----------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAGCAGCTAATGCATATTTTAGTTT--CA-G------TGTTTCAGTTAAAGGCTCTA---------------------------------------------AC---------------------------------------------------TGCT----TAAAACTTTTTAAACGTGCACAAC------------------------------------------------------TTTGTTAA---------------GCCGTTTGCT---T------GTTTTTTATACCCTG-AACCCATTAA-----------------AAATGGGT-ATAAGGGTATATTGTATTTGTGCAAAACCAAAATG-TATGTAACA-GGCAGAAGGAAGCATCTCCGACC
droMoj3 scaffold_6540:1604696-1604935 - dmo_1768 CCAGC----GGTAAAAGCAGCTTATC------GGAGGACTATGAGAACAATAGTGTTATGGTGAGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------GAA--------------------------------------------------------TA---------------------------------------------ATAAT---------TGAA----------------------------------------------------TAATA--TACATGTATATTA---------ATATT------------------GATATCATCTATCTAAAA-ATAAAATTGAAATAGTAT-----TCTAATTT---ATCTTTCTTTTTTCATACCCTG-AACCCATTGA-----------------AAATGGGAAATCTGGGTATAATGGTTTTG-TGAA-------AAA-AATGTAACG-GGCAGAAGGATTCATCGCAGACC
droGri2 scaffold_9652:249-411 + GTTGA----GATGA--GC----TG----------------------------------------------------------------------------------------------------------------------------------GCTGGGCAATGAAG-----------TATA----A---------------A--------------------------------GACAAAAACCTTTT-A-------------------------G---------------------------------------------GCAATGGGTTCAGA---------------------------------------------------------------GCTTGAATTTTTC---------GTCTC----------------------------------------------------------TTTTTTTTTTT--T------TAATTTTATACCCAT-T-GA-----------------------AAATGTGT-GAAAAGGTATA--------------------------ATGTAACAAAGCACTAGAAAGCAACTCCGATC
droAna3 scaffold_13337:12003580-12003754 + ACAAC----AACAA---------------------------------------TGTGTTGATGACTTCA----------------------------------------------------------------------------------------------------------------------------------------------------CCCCAAACCTCAAA-ATATACG------------------------------------------------------AAAAAAAAAGTTGTCTGGCGAACGTGAGGA------------GA---------------------------------------------------------------GTTT-------TA---------TTTT-------------------------------------------------------------CGAAAATTT--G------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAGACATCTCCGACC
droBip1 scf7180000395045:18065-18215 - ACCA--------------------------------------------------------------------------------------------------------------------------------------ACTGCAAAAA--------------------------------------------------------------------------------T-----AAAACAAAAATGTATA-A------GGTAAAGAATAAAGGCTTT------------------------------------------------------------------------------------------------------------------------------TCAATTTACA---------GACTA----------------------------------------------------------A---ACAAAAT--A------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTAAAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAAACATCTCCGACC
droKik1 scf7180000300685:1556-1776 - CA-GC----AGAAACGACAACATCTG------CA--------------------------------------------------------------------------------TTAAA-----------------GACAACGACAG-CAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------ACAGC--AGC---GATTACAAATAAATCTGCAACAACAACTACAGCGGCAGTGACGACAGCAGC-GA-CG-ACCGAGGACAAGGAGCAGCTAAGTCTAATTAC-AA------AATTTTTATACCC--TTGC------------------------------------AGGGTATTATAATTTCAGTCAG-------AAG-TTTGCAACG-CAGTGAAGGAAACGTTTCCGACC
droFic1 scf7180000453903:127342-127476 + CCAGC----GGCAAGAGCAGCCTGTC------CGAGGACTACGACAATAACAGTGTAATGGTGAGTACG---------------------------------------------------------------------------------------------------------AAAAC------------AAGGTTCCTCAGAA--------------------------------CCCAGAAC---CAGG------GGTCAATGTA-------GTG---------------------------------------------GCAAT---------GACA----------------------------------------------------TAATT--AGCACGGTTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCC
droEle1 scf7180000491024:414398-414531 + ACCAC----TGGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCCAAATTG--CG----------------------------------------------------------------------------------------------------------------------------------------------------------GAAC------------------------------------------------------AACGATAA---------------TGGCC--TTGC--T------TATTTTTACAAACGT-TACTCTTAGA-----------------------GT-AAAAGGGGGTATTGTATTCGTTAAA-------ATG-TATGTGACA-GGTAGAAGGAAGCGTTTCCGACC
droRho1 scf7180000780057:53824-54090 + CCAAA----AACAACAACAGCA-----------ATGGTCGACAGCAACAGCAGTACCAA------C----------------------------------------------------------------------AACACAATGGT-TAGTTAT-------CG---------------------------------------------------------------------------------------------------------------AAG---------------------------------TAAATGTGG---TAAAG---------TAAATTATTTGCCCAACGGCTAATGACAATGGCATTGGCAACTACA----------ACAGC--AAC---AATTCCA---------GCAACAACAACAGCAGTGGCAATAA---------C-AA-CATGGCC------------------AGCACTCACATAT------CCTTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTCAGTCAA-------AAG-TTTGCAACG-CAGTGAAGGAGACATTTCCGACC
droBia1 scf7180000301256:66505-66685 - AGCGTTAGTGTGG------GCGTGGCACCCCGCTGA--------------------------------------------------------------------------AACAGA---CTTGCGCTGCGACGGCA-----------------------G-------------------------------------CCCAGAAATCCGCA-----------------------------------------TGCCAAGTCA------------------------------------------------------------------------------------------------------------------------------------------AAT---AATTCTA---------GCTTT----------------------------------------------------------TATATAATTAT--A------TATTTTTGTACCC--TTACA----------------------------------GAGGGTATAATGATTTCAATCAG-------AAG-TTTGCAACG-CAGTGAAGGAGACGTTTCTGACC
droTak1 scf7180000415741:78865-79097 - ACAAC----AGCAGCAGCAACATCTC-----GCGGAGGCCGCGGCGGCAGCCGG-----AATGGATGCC---------------------------------------------------------------------------------------------------------AATTC------------A------------------------------------------------------------------------------GCGCTCTGGCATCCGCTTTTCGGAAGGTGAGGATTGTATTATAAAAGTGATAA------------G-TGATTT----------------------------------------------------ATT--TGC---------A---------GACAG-------------------------T--------------------------------TTATTTAAAGT--T------TTTTATTATACCCGT-TACTCGTAGA-----------------------GT-AATAGGGTATATTGCATTAGTGCAA-------AAG-TATGTAACG-GGGAGAAGGAAGCGTTTCCGATA
droEug1 scf7180000409094:4152-4339 - TCCT-------------------------------------------------------GATGCCTACT---CCTTT---------------------------------TACTTAAAT-----------------TAATCTAAGAT-AAGTTAATAAAAGATT---------------------------------------------------------------------------------------------------------------GGG---------------------------------------------AAAAA---------TACATAATTAAAACAATAATTAT--------------------CGG-------------------------------------------------------------------------------------------------------AAAAAGACAT--T------TGTAATTATACCCGC-CACTCGTAGA-----------------------GT-AAAAGGCTATATTAGATTCGTTGAA-------AAGTTATGTAACA-GGTAGAAGGAAGCTTTTCCGACC
dm3 chr3RHet:2437336-2437516 - ATATT----GAGG------GCCCGTC------CGTCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCGAAAAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------AAAAT---------TTAA----------------------------------------------------TGATT--TTAATAGTTT-----------------------------------------------------------------------------TCTTGCCA---AT--AGCTTTCGACATACCCAA-TGCCCA--------------------------------AAAGATATAACAGATTCGTTGAA-------AAG-TATGTAACA-GGTAGAATGAAGAGTTTCCGACC
droSim2 4:857843-858059 - AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACACTTCCG----------AAAAA--AAT---GATTTT------------------------------------------------------------------------------AATTTT--G------------TATT-CCTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAAC
droSec2 scaffold_40:119529-119741 - AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACAC----GAAAA------AAATT--A-------T------------------------------------------------------------------------------TTTAATTTT--G------TATTT-------CTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAAC
droYak3 X:20732823-20732992 - GTTGA----ACTTA--A------------------------------------------------------------------------------------------------------CCTGAAATACAATTGCA-----------------------A-------------------------------------TCTTACATACCGCAATTTCTCTTCT---------------------------C-ACTC----------------------------------------------------------GATGTGAGTG------------AA---------------------------------------------------------------GCTTAA-----------------------------------------------------------------------------------A--CTTC--T------TATATTTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTATACTAGATTCGTTGAA-------AAG-TATGTAACA-GACAGAAGGAAGCGTTTCCGACC
droEre2 scaffold_4929:3559233-3559444 + ACAAC----GACT---------------------------------------GCGTTAAGATGAGTTCTACTCCATTACTACTAAATGGAATTAATCGTACACACATGGTGA---------------------------------------------------------GTGTACA--CAAGATGAGTTCATATGTTCCTTATCA--------------------------------CCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------ATACC----------------------------------------------------------ATCTTTAACTT--T------TATTATTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTAAACTAGATTCGTTGAA-------AAA-TATGTAACA-GGCAGAAG-AAACCTTTCCGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAACCGCTGAGATGAACCCGAACTA--CG-G------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCCA---------GTCTC----------------------------------------------------------GACGCGAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATAGTTTCCGACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGTG.............................232061.3012260000000012260
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGT..............................22201.653300003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAT...................................18201.452902900000000
.......................CTC------CGAGGACTACGACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........CAAGAGCAGTCTCTC------CGAGGACTACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
......................................CTACGACAACAACAGTGTCATGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................ACTACGACAACAACAGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............AGCAGTCTCTC------CGAGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................CTCTC------CGAGGACTACGACAACAACAGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
................GCAGTCTCTC------CGAGGACTACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGTGTAA..........................26200.901800000018000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATG-TGTG.............................19200.901800000000180
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATG-TGTGTAACG-.......................27200.651301300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATG-TGTGT............................22200.501000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAAAGTGGAT...................................21200.4590900000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGT.......................................21200.4080000008000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATG-T................................18200.3570700000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGGATG-TGTGTAACG-.......................20200.3060000006000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGTGT............................24200.2550000500000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATG-TGTGTAACG-TCC....................20200.2040000040000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATG-TGTGTAAC.........................21200.2040000004000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATG-TGTGTAACG-T......................28200.2040000004000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGG.....................................20200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGGA....................................21200.1530000000003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATG-.................................24200.1530000000030
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-.................................19200.1530030000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCCAGAAGGAATAGTTTCCG...2190.1110000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---------------------AAATGAGT-ATTGGGGTATA..........................................................23200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCGA-TACTCA---------------------AAAT..........................................................................20200.1020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATG-TGTGTAACG-.......................24200.1020000000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATG-TGA..............................20200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATG-TGTGTAACG-TCCA...................21200.1020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTG......................................19200.1020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TATTTTTATACCCGA-TACT.....................................................................................................20200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-ATTGGGGTATATTAGATTTGTGGTA............................................27200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG-TGTGTAACG-TCCAGAAGG..............22200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCA---------------------AAATGAGT-ATTGGGGT.............................................................22200.0510000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATG-TGTGTAACG-T......................22200.0510000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATACCCGA-TACTCA---------------------AAATG.........................................................................23200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGAT...................................20200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATG-TGTGTAACG-.......................21200.0510000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TGTGTAACG-TCCAGAAGG..............20200.0510001000000
droPer2
CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAGCCGCTGAGATGAGCCCAAAACA--CGGG------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCTA---------GTTTC----------------------------------------------------------GACGCTAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATCGTTTCCGA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................CTCTC------CGAGGACTACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
...GC----GGCAAGAGCAGTCTCTC------CGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................CTCTC------CGAGGACTACGACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGTGTAACG-TCCAGAAGGAA............21201.00200000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATG-T................................21200.306000006
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG-TCCAGAAGGAATCGTTTCC....22200.153000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATG-TGTGTAA..........................23200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGT-ATTGGGGTATATT........................................................18200.102020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGT-ATTGGGGTATATTAGATTTG.................................................24200.051010000
droWil2
TCAAC----AGCAGGAGCAATATTTTACCTCACGAGGA----GACAAC-------TCAGAGTTAGTCCC-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACCACA--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------AGGACACCGT--T------AATTTTTATACCC--TTGCA--------------------------------AAAAGGGTATATTAATTTTGGTCAG-------AAG-TGTGCAACG-CATAGAAGGAAGCATTTCCGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-C....................................................................................................................................................................24200.25504010
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................23200.20403010
....................................................................C-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20404000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-.....................................................................................................................................................................23200.15303000
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-.....................................................................................................................................................................26200.15302010
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-C....................................................................................................................................................................27200.15302010
..........................................................................................................................................................................................................ACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------AGGACACCGT--................................................................................................................................24200.15303000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAA.................................................................................................................................................................27200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-CAAATCG------------------AGGACACCGT--T------AATT.....................................................................................................................24200.10202000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CA...................................................................................................................................................................25200.10202000
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-C.......................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................CAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAA..................................................................................................................................................................21200.05100010
...............................................................................................................................................................................A--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-C.......................................................................................................................................................................27200.05100010
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................22200.05101000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAAT................................................................................................................................................................28200.05101000
..................................................................................................................................................................................CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CA...................................................................................................................................................................29200.05101000
............................................................................................................................................................................................TCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------A...........................................................................................................................................29200.05101000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAA..................................................................................................................................................................26200.05101000
....................................................................................................................................................................................ACA----ATCGCAGGAGCCTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
...............................................................................................................................................................................A--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-........................................................................................................................................................................26200.05101000
....................................................................C-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.............................................................................................................................................................................................CGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-C....................................................................................................................................................................21200.05100010
..................................................................................................................................................................................CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-.....................................................................................................................................................................27200.05101000
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CA...................................................................................................................................................................28200.05101000
droVir3
GTGAT----T--------------------------------------------------------TCT----------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAGCAGCTAATGCATATTTTAGTTT--CA-G------TGTTTCAGTTAAAGGCTCTA---------------------------------------------AC---------------------------------------------------TGCT----TAAAACTTTTTAAACGTGCACAAC------------------------------------------------------TTTGTTAA---------------GCCGTTTGCT---T------GTTTTTTATACCCTG-AACCCATTAA-----------------AAATGGGT-ATAAGGGTATATTGTATTTGTGCAAAACCAAAATG-TATGTAACA-GGCAGAAGGAAGCATCTCCGACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATATTG.......................................................26204.25850000800000000000000000000770000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATAT.........................................................24202.755500000000390000000000000000000000000016000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATATT........................................................25202.20440000000000000000000000000043000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATATTGT......................................................27200.65130000000000000000000000000013000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGCATC.......25200.6012009000030000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATGTAACA-GGCAGAAGGAAGCA.........24200.357000000000000000000000000000007000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-GGCAGAAGGAA............18200.204000000000000000000000000400000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----------------AAATGGGT-ATAAGGGTATATTGTA.....................................................27200.153000000000000000000000000002000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGCAGAAGGAAGCATCTCCGA..26200.102002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGCATCTC.....27200.102000000000000000000000000000020000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCG...19200.102000000000000000000000000000000000200000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACC19200.051000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GGCAGAAGGAAGCATCTCCGACC24200.051000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA-GGCAGAAGGAAGCATCTC.....26200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA-GGCAGAAGGAAGCATC.......24200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATGTAACA-GGCAGAAGGAA............21200.051000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TATGTAACA-GGCAGAAGGA.............21200.051000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCC....19200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACA-GGCAGAAGGAAGC..........19200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGT-ATAAGGGTATATTGTATT...................................................23200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGC..........22200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCATCTCCGACC20200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGCAT........24200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-ATAAGGGTATATTGTATT...................................................21200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG-TATGTAACA-GGCAGAAGGAA............24200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGACC22200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGAC.21200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
CCAGC----GGTAAAAGCAGCTTATC------GGAGGACTATGAGAACAATAGTGTTATGGTGAGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------GAA--------------------------------------------------------TA---------------------------------------------ATAAT---------TGAA----------------------------------------------------TAATA--TACATGTATATTA---------ATATT------------------GATATCATCTATCTAAAA-ATAAAATTGAAATAGTAT-----TCTAATTT---ATCTTTCTTTTTTCATACCCTG-AACCCATTGA-----------------AAATGGGAAATCTGGGTATAATGGTTTTG-TGAA-------AAA-AATGTAACG-GGCAGAAGGATTCATCGCAGACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................C------GGAGGACTATGAGAACAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................GGACTATGAGAACAATAGTGTTATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........GTAAAAGCAGCTTATC------GGAGGACTATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...GC----GGTAAAAGCAGCTTATC------GGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........GGTAAAAGCAGCTTATC------GGAGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..............AAGCAGCTTATC------GGAGGACTATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........GGTAAAAGCAGCTTATC------GGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................CTTATC------GGAGGACTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTT....................................................23200.357600001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTTTTG-................................................26200.306600000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTTT...................................................24200.204400000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACCCTG-AACCCATTGA-----------------AAA...........................................................................22170.061100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTA....................................................23200.051000001
droGri2
GTTGA----GATGA--GC----TG----------------------------------------------------------------------------------------------------------------------------------GCTGGGCAATGAAG-----------TATA----A---------------A--------------------------------GACAAAAACCTTTT-A-------------------------G---------------------------------------------GCAATGGGTTCAGA---------------------------------------------------------------GCTTGAATTTTTC---------GTCTC----------------------------------------------------------TTTTTTTTTTT--T------TAATTTTATACCCAT-T-GA-----------------------AAATGTGT-GAAAAGGTATA--------------------------ATGTAACAAAGCACTAGAAAGCAACTCCGATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ACAAC----AACAA---------------------------------------TGTGTTGATGACTTCA----------------------------------------------------------------------------------------------------------------------------------------------------CCCCAAACCTCAAA-ATATACG------------------------------------------------------AAAAAAAAAGTTGTCTGGCGAACGTGAGGA------------GA---------------------------------------------------------------GTTT-------TA---------TTTT-------------------------------------------------------------CGAAAATTT--G------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAGACATCTCCGACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TGTGCAACG-CAGTGAAGG..............22200.408800000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAA-------AAG-TGTGCAACG-CAGTGAAGGA.............27200.153030000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCAA-------AAG-TGTGCAACG-CAGT...................24200.153000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA-------AAG-TGTGCAACG-CAGTGAAG...............24200.153003000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG-CAGTGAAGGAGACA.........18200.153000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTTGGTCAA-------AAG-.................................21200.102020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------AAG-TGTGCAACG-CAGTGAAGG..............24200.102000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG-CAGTGAAGGAGACATCT......21200.102002000
droBip1
ACCA--------------------------------------------------------------------------------------------------------------------------------------ACTGCAAAAA--------------------------------------------------------------------------------T-----AAAACAAAAATGTATA-A------GGTAAAGAATAAAGGCTTT------------------------------------------------------------------------------------------------------------------------------TCAATTTACA---------GACTA----------------------------------------------------------A---ACAAAAT--A------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTAAAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAAACATCTCCGACCSizeHit CountTotal NormTotal
No Reads
droKik1
CA-GC----AGAAACGACAACATCTG------CA--------------------------------------------------------------------------------TTAAA-----------------GACAACGACAG-CAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------ACAGC--AGC---GATTACAAATAAATCTGCAACAACAACTACAGCGGCAGTGACGACAGCAGC-GA-CG-ACCGAGGACAAGGAGCAGCTAAGTCTAATTAC-AA------AATTTTTATACCC--TTGC------------------------------------AGGGTATTATAATTTCAGTCAG-------AAG-TTTGCAACG-CAGTGAAGGAAACGTTTCCGACCSizeHit CountTotal NormTotal
No Reads
droFic1
CCAGC----GGCAAGAGCAGCCTGTC------CGAGGACTACGACAATAACAGTGTAATGGTGAGTACG---------------------------------------------------------------------------------------------------------AAAAC------------AAGGTTCCTCAGAA--------------------------------CCCAGAAC---CAGG------GGTCAATGTA-------GTG---------------------------------------------GCAAT---------GACA----------------------------------------------------TAATT--AGCACGGTTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCSizeHit CountTotal NormTotal
No Reads
droEle1
ACCAC----TGGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCCAAATTG--CG----------------------------------------------------------------------------------------------------------------------------------------------------------GAAC------------------------------------------------------AACGATAA---------------TGGCC--TTGC--T------TATTTTTACAAACGT-TACTCTTAGA-----------------------GT-AAAAGGGGGTATTGTATTCGTTAAA-------ATG-TATGTGACA-GGTAGAAGGAAGCGTTTCCGACCSizeHit CountTotal NormTotal
No Reads
droRho1
CCAAA----AACAACAACAGCA-----------ATGGTCGACAGCAACAGCAGTACCAA------C----------------------------------------------------------------------AACACAATGGT-TAGTTAT-------CG---------------------------------------------------------------------------------------------------------------AAG---------------------------------TAAATGTGG---TAAAG---------TAAATTATTTGCCCAACGGCTAATGACAATGGCATTGGCAACTACA----------ACAGC--AAC---AATTCCA---------GCAACAACAACAGCAGTGGCAATAA---------C-AA-CATGGCC------------------AGCACTCACATAT------CCTTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTCAGTCAA-------AAG-TTTGCAACG-CAGTGAAGGAGACATTTCCGACCSizeHit CountTotal NormTotal
No Reads
droBia1
AGCGTTAGTGTGG------GCGTGGCACCCCGCTGA--------------------------------------------------------------------------AACAGA---CTTGCGCTGCGACGGCA-----------------------G-------------------------------------CCCAGAAATCCGCA-----------------------------------------TGCCAAGTCA------------------------------------------------------------------------------------------------------------------------------------------AAT---AATTCTA---------GCTTT----------------------------------------------------------TATATAATTAT--A------TATTTTTGTACCC--TTACA----------------------------------GAGGGTATAATGATTTCAATCAG-------AAG-TTTGCAACG-CAGTGAAGGAGACGTTTCTGACCSizeHit CountTotal NormTotal
No Reads
droTak1
ACAAC----AGCAGCAGCAACATCTC-----GCGGAGGCCGCGGCGGCAGCCGG-----AATGGATGCC---------------------------------------------------------------------------------------------------------AATTC------------A------------------------------------------------------------------------------GCGCTCTGGCATCCGCTTTTCGGAAGGTGAGGATTGTATTATAAAAGTGATAA------------G-TGATTT----------------------------------------------------ATT--TGC---------A---------GACAG-------------------------T--------------------------------TTATTTAAAGT--T------TTTTATTATACCCGT-TACTCGTAGA-----------------------GT-AATAGGGTATATTGCATTAGTGCAA-------AAG-TATGTAACG-GGGAGAAGGAAGCGTTTCCGATASizeHit CountTotal NormTotal
No Reads
droEug1
TCCT-------------------------------------------------------GATGCCTACT---CCTTT---------------------------------TACTTAAAT-----------------TAATCTAAGAT-AAGTTAATAAAAGATT---------------------------------------------------------------------------------------------------------------GGG---------------------------------------------AAAAA---------TACATAATTAAAACAATAATTAT--------------------CGG-------------------------------------------------------------------------------------------------------AAAAAGACAT--T------TGTAATTATACCCGC-CACTCGTAGA-----------------------GT-AAAAGGCTATATTAGATTCGTTGAA-------AAGTTATGTAACA-GGTAGAAGGAAGCTTTTCCGACCSizeHit CountTotal NormTotal
No Reads
dm3
ATATT----GAGG------GCCCGTC------CGTCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCGAAAAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------AAAAT---------TTAA----------------------------------------------------TGATT--TTAATAGTTT-----------------------------------------------------------------------------TCTTGCCA---AT--AGCTTTCGACATACCCAA-TGCCCA--------------------------------AAAGATATAACAGATTCGTTGAA-------AAG-TATGTAACA-GGTAGAATGAAGAGTTTCCGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGA.................26205.60112000000000000000000000010000000000000000001001000203010000100000000000000000000000000001000000000000000000000000000000000000000000000000000000010301300001600000000000000000000100000000000000010000300000000700020000010003050311000000000010000000000000000000000000000000000000000000000000200000416100000001934000000000000003032000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGAA................27203.6573000000000000000000000010000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010202211010040000000000000000000000000000000000000000000000000300000000000003031301000001000000000000000000000000000000000000000000000000000000000000111110000002213000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTAGA.................27202.354700000000000000000000000000000000000000000000000000001000000100000000000000000000001000000000000000000000000000000000000000000000000000000001000080200000000000000000000000000000000000000000000000030000000210000000000100010021000000000000000000000000000000000000000000000000000000000000004000001001000000501000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAATGAAGAG.........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGTAGAATGAAGAGTT.......2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GGTAGAATGAAGAGTTTCCGAC.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................CGAAAAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------A..............................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GGTAGAATGAAGAGTTTC.....2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000
....................................CACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTTTCCGAC.2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................AAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------AAAAT---------T................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-TAT..............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAA................24201.553100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000040000000000000101209000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGAAT...............2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTA...................24201.102200000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203000000000000000000000000000000000000020020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------------------------------------------------------------------TCTTGCCA---AT--AGCTTTCG....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-GGTAGAATGAAGAGTTTCCG...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AT--AGCTTTCGACATACCCAA-T........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-T................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.TATT----GAGG------GCCCGTC------CGTCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCA--------------------------------AAAGATATAACAGATTCGT................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................CCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCA--------------------------------AAAGATATAACAGATTCG.................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-GGTAGAATGAAGAGTTTCC....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CCACTGT--------------------------------------------------------------------GACGCATAC-----------------AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAACAGATTCGTTGAA-------AAG-TATGT............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-TATGT............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GGTAGAATGAAGAGTTTCCGACC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAA-TGCCCA--------------------------------AAAGATATAACAGA.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TATGTAACA-GGTAGAATGAAGAG.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGATTCGTTGAA-------AAG-TAT..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTTTCT....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGTAGAATGAAGAGTTTC.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGAATGAAGA..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
ATATT----GAGG------GCCCGTC------CGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA-GGTAGAATGAAGAGTTTC.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATGAA............2821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TC------CGTCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCCGTC------CGTCCACTGT--------------------------------------------------------------------GACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------AAAGATATAACAGATTCGT................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGT........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TT----GAGG------GCCCGTC------CGTCCACTGT--------------------------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAATGAAGAGT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAATGAAGA..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTTTC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTA...................25200.90180000000000000000000000000000000000000000000000001000100000000000000000000000000000200000000000001000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000005000000000003000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTAGAA................28190.63120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000141000000200000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAG..................25200.55110000000000000000000000000000000000000000000000000000000000200000000000000000000000200000000000000000000000000000000000000000000000000000000000003000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATGA.............2720.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATG..............2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGAATGAAG...........2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------AAG-TATGTAACA-GGTAGA.................21200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010060000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GG.....................23200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGT....................24200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGAAT...............2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGAC................27200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGA.................23200.3060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTAG..................26200.2550000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATGAT............2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATGTAACA-GGTAGAATGAA............2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAG-TATGTAACA-GGTAGAA................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGTAGAATGAA............2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTCGTTGAA-------AAG-TATGTAACA-GG.....................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAG-TATGTAACA-GGTAGA.................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGC.................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAG..................22200.1020000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAA-------AAG-TATGTAACA-GGTAGA.................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAG-TATGTAACA-GGT....................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGT.................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTA...................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-G......................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GG.....................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGAA-------AAG-TATGTAACA-GGTA...................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGA.................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAC..................25200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAA................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTT...................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACA-GGTAGA.................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGT....................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACACTTCCG----------AAAAA--AAT---GATTTT------------------------------------------------------------------------------AATTTT--G------------TATT-CCTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACT-TGTAGGACGTCGCGT........2417.00700000007000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACT-TGTAGGACGTCGCGT........2915.00500000022100000000
................................................................................................................................................AAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--C.........................................................................................................................................................................................................................................................................................................................................................................................2313.00300300000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACT-TGTAGGACGTCGCGTT.......2513.00300000001110000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACT-TGTAGGACGTCGC..........2711.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACT-TGTAGGACGT.............2411.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTA...........................17200.05100000000001000000
droSec2
AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACAC----GAAAA------AAATT--A-------T------------------------------------------------------------------------------TTTAATTTT--G------TATTT-------CTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TATGTAACT-TGTAGGACGTCG...........2311.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCACACTAGCTTCGTTGAA-------AA...................................2611.0010100
droYak3
GTTGA----ACTTA--A------------------------------------------------------------------------------------------------------CCTGAAATACAATTGCA-----------------------A-------------------------------------TCTTACATACCGCAATTTCTCTTCT---------------------------C-ACTC----------------------------------------------------------GATGTGAGTG------------AA---------------------------------------------------------------GCTTAA-----------------------------------------------------------------------------------A--CTTC--T------TATATTTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTATACTAGATTCGTTGAA-------AAG-TATGTAACA-GACAGAAGGAAGCGTTTCCGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................TTACATACCGCAATTTCTCTTCT---------------------------C-A......................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA-------AAG-TATGTAACA-GACAGAAGGAAG...........28200.10200000000002
droEre2
ACAAC----GACT---------------------------------------GCGTTAAGATGAGTTCTACTCCATTACTACTAAATGGAATTAATCGTACACACATGGTGA---------------------------------------------------------GTGTACA--CAAGATGAGTTCATATGTTCCTTATCA--------------------------------CCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------ATACC----------------------------------------------------------ATCTTTAACTT--T------TATTATTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTAAACTAGATTCGTTGAA-------AAA-TATGTAACA-GGCAGAAG-AAACCTTTCCGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAA-------AAA-TATGTAAC.........................2680.1311000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGT-TACTCGTAGA-----------------------GT-AAAAGG...............................................................25200.0511000000

Generated: 05/17/2015 at 11:16 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:24101307-24101557 + dps_765 CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAACCGCTGAGATGAACCCGAACTA--CG-G------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCCA---------GTCTC----------------------------------------------------------GACGCGAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATAGTTTCCGACC
droPer2 scaffold_3:6877739-6877988 + dpe_1416 CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAGCCGCTGAGATGAGCCCAAAACA--CGGG------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCTA---------GTTTC----------------------------------------------------------GACGCTAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATCGTTTCCGA--
droWil2 scf2_1100000004911:17740-17938 - TCAAC----AGCAGGAGCAATATTTTACCTCACGAGGA----GACAAC-------TCAGAGTTAGTCCC-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACCACA--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------AGGACACCGT--T------AATTTTTATACCC--TTGCA--------------------------------AAAAGGGTATATTAATTTTGGTCAG-------AAG-TGTGCAACG-CATAGAAGGAAGCATTTCCGACC
droVir3 scaffold_13324:2182367-2182576 + GTGAT----T--------------------------------------------------------TCT----------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAGCAGCTAATGCATATTTTAGTTT--CA-G------TGTTTCAGTTAAAGGCTCTA---------------------------------------------AC---------------------------------------------------TGCT----TAAAACTTTTTAAACGTGCACAAC------------------------------------------------------TTTGTTAA---------------GCCGTTTGCT---T------GTTTTTTATACCCTG-AACCCATTAA-----------------AAATGGGT-ATAAGGGTATATTGTATTTGTGCAAAACCAAAATG-TATGTAACA-GGCAGAAGGAAGCATCTCCGACC
droMoj3 scaffold_6540:1604696-1604935 - dmo_1768 CCAGC----GGTAAAAGCAGCTTATC------GGAGGACTATGAGAACAATAGTGTTATGGTGAGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------GAA--------------------------------------------------------TA---------------------------------------------ATAAT---------TGAA----------------------------------------------------TAATA--TACATGTATATTA---------ATATT------------------GATATCATCTATCTAAAA-ATAAAATTGAAATAGTAT-----TCTAATTT---ATCTTTCTTTTTTCATACCCTG-AACCCATTGA-----------------AAATGGGAAATCTGGGTATAATGGTTTTG-TGAA-------AAA-AATGTAACG-GGCAGAAGGATTCATCGCAGACC
droGri2 scaffold_9652:249-411 + GTTGA----GATGA--GC----TG----------------------------------------------------------------------------------------------------------------------------------GCTGGGCAATGAAG-----------TATA----A---------------A--------------------------------GACAAAAACCTTTT-A-------------------------G---------------------------------------------GCAATGGGTTCAGA---------------------------------------------------------------GCTTGAATTTTTC---------GTCTC----------------------------------------------------------TTTTTTTTTTT--T------TAATTTTATACCCAT-T-GA-----------------------AAATGTGT-GAAAAGGTATA--------------------------ATGTAACAAAGCACTAGAAAGCAACTCCGATC
droAna3 scaffold_13337:12003580-12003754 + ACAAC----AACAA---------------------------------------TGTGTTGATGACTTCA----------------------------------------------------------------------------------------------------------------------------------------------------CCCCAAACCTCAAA-ATATACG------------------------------------------------------AAAAAAAAAGTTGTCTGGCGAACGTGAGGA------------GA---------------------------------------------------------------GTTT-------TA---------TTTT-------------------------------------------------------------CGAAAATTT--G------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAGACATCTCCGACC
droBip1 scf7180000395045:18065-18215 - ACCA--------------------------------------------------------------------------------------------------------------------------------------ACTGCAAAAA--------------------------------------------------------------------------------T-----AAAACAAAAATGTATA-A------GGTAAAGAATAAAGGCTTT------------------------------------------------------------------------------------------------------------------------------TCAATTTACA---------GACTA----------------------------------------------------------A---ACAAAAT--A------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTAAAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAAACATCTCCGACC
droKik1 scf7180000300685:1556-1776 - CA-GC----AGAAACGACAACATCTG------CA--------------------------------------------------------------------------------TTAAA-----------------GACAACGACAG-CAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------ACAGC--AGC---GATTACAAATAAATCTGCAACAACAACTACAGCGGCAGTGACGACAGCAGC-GA-CG-ACCGAGGACAAGGAGCAGCTAAGTCTAATTAC-AA------AATTTTTATACCC--TTGC------------------------------------AGGGTATTATAATTTCAGTCAG-------AAG-TTTGCAACG-CAGTGAAGGAAACGTTTCCGACC
droFic1 scf7180000453903:127342-127476 + CCAGC----GGCAAGAGCAGCCTGTC------CGAGGACTACGACAATAACAGTGTAATGGTGAGTACG---------------------------------------------------------------------------------------------------------AAAAC------------AAGGTTCCTCAGAA--------------------------------CCCAGAAC---CAGG------GGTCAATGTA-------GTG---------------------------------------------GCAAT---------GACA----------------------------------------------------TAATT--AGCACGGTTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCC
droEle1 scf7180000491024:414398-414531 + ACCAC----TGGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCCAAATTG--CG----------------------------------------------------------------------------------------------------------------------------------------------------------GAAC------------------------------------------------------AACGATAA---------------TGGCC--TTGC--T------TATTTTTACAAACGT-TACTCTTAGA-----------------------GT-AAAAGGGGGTATTGTATTCGTTAAA-------ATG-TATGTGACA-GGTAGAAGGAAGCGTTTCCGACC
droRho1 scf7180000780057:53824-54090 + CCAAA----AACAACAACAGCA-----------ATGGTCGACAGCAACAGCAGTACCAA------C----------------------------------------------------------------------AACACAATGGT-TAGTTAT-------CG---------------------------------------------------------------------------------------------------------------AAG---------------------------------TAAATGTGG---TAAAG---------TAAATTATTTGCCCAACGGCTAATGACAATGGCATTGGCAACTACA----------ACAGC--AAC---AATTCCA---------GCAACAACAACAGCAGTGGCAATAA---------C-AA-CATGGCC------------------AGCACTCACATAT------CCTTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTCAGTCAA-------AAG-TTTGCAACG-CAGTGAAGGAGACATTTCCGACC
droBia1 scf7180000301256:66505-66685 - AGCGTTAGTGTGG------GCGTGGCACCCCGCTGA--------------------------------------------------------------------------AACAGA---CTTGCGCTGCGACGGCA-----------------------G-------------------------------------CCCAGAAATCCGCA-----------------------------------------TGCCAAGTCA------------------------------------------------------------------------------------------------------------------------------------------AAT---AATTCTA---------GCTTT----------------------------------------------------------TATATAATTAT--A------TATTTTTGTACCC--TTACA----------------------------------GAGGGTATAATGATTTCAATCAG-------AAG-TTTGCAACG-CAGTGAAGGAGACGTTTCTGACC
droTak1 scf7180000415741:78865-79097 - ACAAC----AGCAGCAGCAACATCTC-----GCGGAGGCCGCGGCGGCAGCCGG-----AATGGATGCC---------------------------------------------------------------------------------------------------------AATTC------------A------------------------------------------------------------------------------GCGCTCTGGCATCCGCTTTTCGGAAGGTGAGGATTGTATTATAAAAGTGATAA------------G-TGATTT----------------------------------------------------ATT--TGC---------A---------GACAG-------------------------T--------------------------------TTATTTAAAGT--T------TTTTATTATACCCGT-TACTCGTAGA-----------------------GT-AATAGGGTATATTGCATTAGTGCAA-------AAG-TATGTAACG-GGGAGAAGGAAGCGTTTCCGATA
droEug1 scf7180000409094:4152-4339 - TCCT-------------------------------------------------------GATGCCTACT---CCTTT---------------------------------TACTTAAAT-----------------TAATCTAAGAT-AAGTTAATAAAAGATT---------------------------------------------------------------------------------------------------------------GGG---------------------------------------------AAAAA---------TACATAATTAAAACAATAATTAT--------------------CGG-------------------------------------------------------------------------------------------------------AAAAAGACAT--T------TGTAATTATACCCGC-CACTCGTAGA-----------------------GT-AAAAGGCTATATTAGATTCGTTGAA-------AAGTTATGTAACA-GGTAGAAGGAAGCTTTTCCGACC
dm3 chr3RHet:2437336-2437516 - ATATT----GAGG------GCCCGTC------CGTCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCGAAAAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------AAAAT---------TTAA----------------------------------------------------TGATT--TTAATAGTTT-----------------------------------------------------------------------------TCTTGCCA---AT--AGCTTTCGACATACCCAA-TGCCCA--------------------------------AAAGATATAACAGATTCGTTGAA-------AAG-TATGTAACA-GGTAGAATGAAGAGTTTCCGACC
droSim2 4:857843-858059 - AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACACTTCCG----------AAAAA--AAT---GATTTT------------------------------------------------------------------------------AATTTT--G------------TATT-CCTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAAC
droSec2 scaffold_40:119529-119741 - AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACAC----GAAAA------AAATT--A-------T------------------------------------------------------------------------------TTTAATTTT--G------TATTT-------CTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAAC
droYak3 X:20732823-20732992 - GTTGA----ACTTA--A------------------------------------------------------------------------------------------------------CCTGAAATACAATTGCA-----------------------A-------------------------------------TCTTACATACCGCAATTTCTCTTCT---------------------------C-ACTC----------------------------------------------------------GATGTGAGTG------------AA---------------------------------------------------------------GCTTAA-----------------------------------------------------------------------------------A--CTTC--T------TATATTTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTATACTAGATTCGTTGAA-------AAG-TATGTAACA-GACAGAAGGAAGCGTTTCCGACC
droEre2 scaffold_4929:3559233-3559444 + ACAAC----GACT---------------------------------------GCGTTAAGATGAGTTCTACTCCATTACTACTAAATGGAATTAATCGTACACACATGGTGA---------------------------------------------------------GTGTACA--CAAGATGAGTTCATATGTTCCTTATCA--------------------------------CCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------ATACC----------------------------------------------------------ATCTTTAACTT--T------TATTATTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTAAACTAGATTCGTTGAA-------AAA-TATGTAACA-GGCAGAAG-AAACCTTTCCGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAACCGCTGAGATGAACCCGAACTA--CG-G------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCCA---------GTCTC----------------------------------------------------------GACGCGAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATAGTTTCCGACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGTG.............................232061.3012260000000012260
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGT..............................22201.653300003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAT...................................18201.452902900000000
.......................CTC------CGAGGACTACGACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........CAAGAGCAGTCTCTC------CGAGGACTACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
......................................CTACGACAACAACAGTGTCATGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................ACTACGACAACAACAGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............AGCAGTCTCTC------CGAGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................CTCTC------CGAGGACTACGACAACAACAGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
................GCAGTCTCTC------CGAGGACTACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGTGTAA..........................26200.901800000018000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATG-TGTG.............................19200.901800000000180
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATG-TGTGTAACG-.......................27200.651301300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATG-TGTGT............................22200.501000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAAAGTGGAT...................................21200.4590900000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGT.......................................21200.4080000008000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATG-T................................18200.3570700000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGGATG-TGTGTAACG-.......................20200.3060000006000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-TGTGT............................24200.2550000500000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATG-TGTGTAACG-TCC....................20200.2040000040000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATG-TGTGTAAC.........................21200.2040000004000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATG-TGTGTAACG-T......................28200.2040000004000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGG.....................................20200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGGA....................................21200.1530000000003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATG-.................................24200.1530000000030
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG-.................................19200.1530030000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCCAGAAGGAATAGTTTCCG...2190.1110000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---------------------AAATGAGT-ATTGGGGTATA..........................................................23200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCGA-TACTCA---------------------AAAT..........................................................................20200.1020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATG-TGTGTAACG-.......................24200.1020000000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATG-TGA..............................20200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATG-TGTGTAACG-TCCA...................21200.1020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTG......................................19200.1020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TATTTTTATACCCGA-TACT.....................................................................................................20200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-ATTGGGGTATATTAGATTTGTGGTA............................................27200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG-TGTGTAACG-TCCAGAAGG..............22200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCA---------------------AAATGAGT-ATTGGGGT.............................................................22200.0510000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATG-TGTGTAACG-T......................22200.0510000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATACCCGA-TACTCA---------------------AAATG.........................................................................23200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGAT...................................20200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATG-TGTGTAACG-.......................21200.0510000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TGTGTAACG-TCCAGAAGG..............20200.0510001000000
droPer2
CCAGC----GGCAAGAGCAGTCTCTC------CGAGGACTACGACAACAACAGTGTCATGGTGAGTACT----------------------------------------------------------------------------------------------------------------------------------------------------CCACTAGCCGCTGAGATGAGCCCAAAACA--CGGG------GGTCAATGGCAAAGGCTCTG---------------------------------------------ACAAT---------CGCA----------------------------------------------------TCATT--AGCACAATTTCTA---------GTTTC----------------------------------------------------------GACGCTAGCTT--T------TATTTTTATACCCGA-TACTCA---------------------AAATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATG-TGTGTAACG-TCCAGAAGGAATCGTTTCCGA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................CTCTC------CGAGGACTACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
...GC----GGCAAGAGCAGTCTCTC------CGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................CTCTC------CGAGGACTACGACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGTGTAACG-TCCAGAAGGAA............21201.00200000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATG-T................................21200.306000006
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG-TCCAGAAGGAATCGTTTCC....22200.153000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATG-TGTGTAA..........................23200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGT-ATTGGGGTATATT........................................................18200.102020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGT-ATTGGGGTATATTAGATTTG.................................................24200.051010000
droWil2
TCAAC----AGCAGGAGCAATATTTTACCTCACGAGGA----GACAAC-------TCAGAGTTAGTCCC-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACCACA--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------AGGACACCGT--T------AATTTTTATACCC--TTGCA--------------------------------AAAAGGGTATATTAATTTTGGTCAG-------AAG-TGTGCAACG-CATAGAAGGAAGCATTTCCGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-C....................................................................................................................................................................24200.25504010
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................23200.20403010
....................................................................C-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20404000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-.....................................................................................................................................................................23200.15303000
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-.....................................................................................................................................................................26200.15302010
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-C....................................................................................................................................................................27200.15302010
..........................................................................................................................................................................................................ACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------AGGACACCGT--................................................................................................................................24200.15303000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAA.................................................................................................................................................................27200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-CAAATCG------------------AGGACACCGT--T------AATT.....................................................................................................................24200.10202000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CA...................................................................................................................................................................25200.10202000
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-C.......................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................CAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAA..................................................................................................................................................................21200.05100010
...............................................................................................................................................................................A--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-C.......................................................................................................................................................................27200.05100010
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................22200.05101000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAAT................................................................................................................................................................28200.05101000
..................................................................................................................................................................................CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CA...................................................................................................................................................................29200.05101000
............................................................................................................................................................................................TCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAAATCG------------------A...........................................................................................................................................29200.05101000
......................................................................................................................................................................................A----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CAA..................................................................................................................................................................26200.05101000
....................................................................................................................................................................................ACA----ATCGCAGGAGCCTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
...............................................................................................................................................................................A--CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-........................................................................................................................................................................26200.05101000
....................................................................C-------------------------------------------------------------------------------------ACAGAACAAAGAGGAAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.............................................................................................................................................................................................CGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-C....................................................................................................................................................................21200.05100010
..................................................................................................................................................................................CCACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-.....................................................................................................................................................................27200.05101000
...................................................................................................................................................................................CACA----ATCGCAGGAGCCTCAACA-------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------C-CA-CA...................................................................................................................................................................28200.05101000
droVir3
GTGAT----T--------------------------------------------------------TCT----------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAGCAGCTAATGCATATTTTAGTTT--CA-G------TGTTTCAGTTAAAGGCTCTA---------------------------------------------AC---------------------------------------------------TGCT----TAAAACTTTTTAAACGTGCACAAC------------------------------------------------------TTTGTTAA---------------GCCGTTTGCT---T------GTTTTTTATACCCTG-AACCCATTAA-----------------AAATGGGT-ATAAGGGTATATTGTATTTGTGCAAAACCAAAATG-TATGTAACA-GGCAGAAGGAAGCATCTCCGACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATATTG.......................................................26204.25850000800000000000000000000770000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATAT.........................................................24202.755500000000390000000000000000000000000016000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATATT........................................................25202.20440000000000000000000000000043000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------AAATGGGT-ATAAGGGTATATTGT......................................................27200.65130000000000000000000000000013000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGCATC.......25200.6012009000030000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATGTAACA-GGCAGAAGGAAGCA.........24200.357000000000000000000000000000007000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-GGCAGAAGGAA............18200.204000000000000000000000000400000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----------------AAATGGGT-ATAAGGGTATATTGTA.....................................................27200.153000000000000000000000000002000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGCAGAAGGAAGCATCTCCGA..26200.102002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGCATCTC.....27200.102000000000000000000000000000020000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCG...19200.102000000000000000000000000000000000200000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACC19200.051000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GGCAGAAGGAAGCATCTCCGACC24200.051000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA-GGCAGAAGGAAGCATCTC.....26200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA-GGCAGAAGGAAGCATC.......24200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATGTAACA-GGCAGAAGGAA............21200.051000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TATGTAACA-GGCAGAAGGA.............21200.051000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCC....19200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACA-GGCAGAAGGAAGC..........19200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGT-ATAAGGGTATATTGTATT...................................................23200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGC..........22200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCATCTCCGACC20200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAAGCAT........24200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-ATAAGGGTATATTGTATT...................................................21200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG-TATGTAACA-GGCAGAAGGAA............24200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGACC22200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGAC.21200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
CCAGC----GGTAAAAGCAGCTTATC------GGAGGACTATGAGAACAATAGTGTTATGGTGAGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------GAA--------------------------------------------------------TA---------------------------------------------ATAAT---------TGAA----------------------------------------------------TAATA--TACATGTATATTA---------ATATT------------------GATATCATCTATCTAAAA-ATAAAATTGAAATAGTAT-----TCTAATTT---ATCTTTCTTTTTTCATACCCTG-AACCCATTGA-----------------AAATGGGAAATCTGGGTATAATGGTTTTG-TGAA-------AAA-AATGTAACG-GGCAGAAGGATTCATCGCAGACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................C------GGAGGACTATGAGAACAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................GGACTATGAGAACAATAGTGTTATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........GTAAAAGCAGCTTATC------GGAGGACTATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...GC----GGTAAAAGCAGCTTATC------GGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........GGTAAAAGCAGCTTATC------GGAGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..............AAGCAGCTTATC------GGAGGACTATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........GGTAAAAGCAGCTTATC------GGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................CTTATC------GGAGGACTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTT....................................................23200.357600001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTTTTG-................................................26200.306600000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTTT...................................................24200.204400000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACCCTG-AACCCATTGA-----------------AAA...........................................................................22170.061100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCTGGGTATAATGGTA....................................................23200.051000001
droGri2
GTTGA----GATGA--GC----TG----------------------------------------------------------------------------------------------------------------------------------GCTGGGCAATGAAG-----------TATA----A---------------A--------------------------------GACAAAAACCTTTT-A-------------------------G---------------------------------------------GCAATGGGTTCAGA---------------------------------------------------------------GCTTGAATTTTTC---------GTCTC----------------------------------------------------------TTTTTTTTTTT--T------TAATTTTATACCCAT-T-GA-----------------------AAATGTGT-GAAAAGGTATA--------------------------ATGTAACAAAGCACTAGAAAGCAACTCCGATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ACAAC----AACAA---------------------------------------TGTGTTGATGACTTCA----------------------------------------------------------------------------------------------------------------------------------------------------CCCCAAACCTCAAA-ATATACG------------------------------------------------------AAAAAAAAAGTTGTCTGGCGAACGTGAGGA------------GA---------------------------------------------------------------GTTT-------TA---------TTTT-------------------------------------------------------------CGAAAATTT--G------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAGACATCTCCGACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TGTGCAACG-CAGTGAAGG..............22200.408800000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAA-------AAG-TGTGCAACG-CAGTGAAGGA.............27200.153030000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCAA-------AAG-TGTGCAACG-CAGT...................24200.153000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA-------AAG-TGTGCAACG-CAGTGAAG...............24200.153003000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG-CAGTGAAGGAGACA.........18200.153000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTTGGTCAA-------AAG-.................................21200.102020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------AAG-TGTGCAACG-CAGTGAAGG..............24200.102000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG-CAGTGAAGGAGACATCT......21200.102002000
droBip1
ACCA--------------------------------------------------------------------------------------------------------------------------------------ACTGCAAAAA--------------------------------------------------------------------------------T-----AAAACAAAAATGTATA-A------GGTAAAGAATAAAGGCTTT------------------------------------------------------------------------------------------------------------------------------TCAATTTACA---------GACTA----------------------------------------------------------A---ACAAAAT--A------TATTTTTATACCC--TTGCA----------------------------------GAGGGTATTAAAATTTTGGTCAA-------AAG-TGTGCAACG-CAGTGAAGGAAACATCTCCGACCSizeHit CountTotal NormTotal
No Reads
droKik1
CA-GC----AGAAACGACAACATCTG------CA--------------------------------------------------------------------------------TTAAA-----------------GACAACGACAG-CAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------ACAGC--AGC---GATTACAAATAAATCTGCAACAACAACTACAGCGGCAGTGACGACAGCAGC-GA-CG-ACCGAGGACAAGGAGCAGCTAAGTCTAATTAC-AA------AATTTTTATACCC--TTGC------------------------------------AGGGTATTATAATTTCAGTCAG-------AAG-TTTGCAACG-CAGTGAAGGAAACGTTTCCGACCSizeHit CountTotal NormTotal
No Reads
droFic1
CCAGC----GGCAAGAGCAGCCTGTC------CGAGGACTACGACAATAACAGTGTAATGGTGAGTACG---------------------------------------------------------------------------------------------------------AAAAC------------AAGGTTCCTCAGAA--------------------------------CCCAGAAC---CAGG------GGTCAATGTA-------GTG---------------------------------------------GCAAT---------GACA----------------------------------------------------TAATT--AGCACGGTTTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCSizeHit CountTotal NormTotal
No Reads
droEle1
ACCAC----TGGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCCAAATTG--CG----------------------------------------------------------------------------------------------------------------------------------------------------------GAAC------------------------------------------------------AACGATAA---------------TGGCC--TTGC--T------TATTTTTACAAACGT-TACTCTTAGA-----------------------GT-AAAAGGGGGTATTGTATTCGTTAAA-------ATG-TATGTGACA-GGTAGAAGGAAGCGTTTCCGACCSizeHit CountTotal NormTotal
No Reads
droRho1
CCAAA----AACAACAACAGCA-----------ATGGTCGACAGCAACAGCAGTACCAA------C----------------------------------------------------------------------AACACAATGGT-TAGTTAT-------CG---------------------------------------------------------------------------------------------------------------AAG---------------------------------TAAATGTGG---TAAAG---------TAAATTATTTGCCCAACGGCTAATGACAATGGCATTGGCAACTACA----------ACAGC--AAC---AATTCCA---------GCAACAACAACAGCAGTGGCAATAA---------C-AA-CATGGCC------------------AGCACTCACATAT------CCTTTTTATACCC--TTGCA----------------------------------GAGGGTATTATAATTTCAGTCAA-------AAG-TTTGCAACG-CAGTGAAGGAGACATTTCCGACCSizeHit CountTotal NormTotal
No Reads
droBia1
AGCGTTAGTGTGG------GCGTGGCACCCCGCTGA--------------------------------------------------------------------------AACAGA---CTTGCGCTGCGACGGCA-----------------------G-------------------------------------CCCAGAAATCCGCA-----------------------------------------TGCCAAGTCA------------------------------------------------------------------------------------------------------------------------------------------AAT---AATTCTA---------GCTTT----------------------------------------------------------TATATAATTAT--A------TATTTTTGTACCC--TTACA----------------------------------GAGGGTATAATGATTTCAATCAG-------AAG-TTTGCAACG-CAGTGAAGGAGACGTTTCTGACCSizeHit CountTotal NormTotal
No Reads
droTak1
ACAAC----AGCAGCAGCAACATCTC-----GCGGAGGCCGCGGCGGCAGCCGG-----AATGGATGCC---------------------------------------------------------------------------------------------------------AATTC------------A------------------------------------------------------------------------------GCGCTCTGGCATCCGCTTTTCGGAAGGTGAGGATTGTATTATAAAAGTGATAA------------G-TGATTT----------------------------------------------------ATT--TGC---------A---------GACAG-------------------------T--------------------------------TTATTTAAAGT--T------TTTTATTATACCCGT-TACTCGTAGA-----------------------GT-AATAGGGTATATTGCATTAGTGCAA-------AAG-TATGTAACG-GGGAGAAGGAAGCGTTTCCGATASizeHit CountTotal NormTotal
No Reads
droEug1
TCCT-------------------------------------------------------GATGCCTACT---CCTTT---------------------------------TACTTAAAT-----------------TAATCTAAGAT-AAGTTAATAAAAGATT---------------------------------------------------------------------------------------------------------------GGG---------------------------------------------AAAAA---------TACATAATTAAAACAATAATTAT--------------------CGG-------------------------------------------------------------------------------------------------------AAAAAGACAT--T------TGTAATTATACCCGC-CACTCGTAGA-----------------------GT-AAAAGGCTATATTAGATTCGTTGAA-------AAGTTATGTAACA-GGTAGAAGGAAGCTTTTCCGACCSizeHit CountTotal NormTotal
No Reads
dm3
ATATT----GAGG------GCCCGTC------CGTCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCGAAAAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------AAAAT---------TTAA----------------------------------------------------TGATT--TTAATAGTTT-----------------------------------------------------------------------------TCTTGCCA---AT--AGCTTTCGACATACCCAA-TGCCCA--------------------------------AAAGATATAACAGATTCGTTGAA-------AAG-TATGTAACA-GGTAGAATGAAGAGTTTCCGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGA.................26205.60112000000000000000000000010000000000000000001001000203010000100000000000000000000000000001000000000000000000000000000000000000000000000000000000010301300001600000000000000000000100000000000000010000300000000700020000010003050311000000000010000000000000000000000000000000000000000000000000200000416100000001934000000000000003032000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGAA................27203.6573000000000000000000000010000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010202211010040000000000000000000000000000000000000000000000000300000000000003031301000001000000000000000000000000000000000000000000000000000000000000111110000002213000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTAGA.................27202.354700000000000000000000000000000000000000000000000000001000000100000000000000000000001000000000000000000000000000000000000000000000000000000001000080200000000000000000000000000000000000000000000000030000000210000000000100010021000000000000000000000000000000000000000000000000000000000000004000001001000000501000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAATGAAGAG.........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGTAGAATGAAGAGTT.......2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GGTAGAATGAAGAGTTTCCGAC.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................CGAAAAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------A..............................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GGTAGAATGAAGAGTTTC.....2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000
....................................CACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTTTCCGAC.2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................AAA-AGGTGTCCAAAAGTTT---------------------------------------------------------------------------------------------------------------TAA---------------------------------------------AAAAT---------T................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-TAT..............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAA................24201.553100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000040000000000000101209000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGAAT...............2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTA...................24201.102200000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203000000000000000000000000000000000000020020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------------------------------------------------------------------TCTTGCCA---AT--AGCTTTCG....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-GGTAGAATGAAGAGTTTCCG...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AT--AGCTTTCGACATACCCAA-T........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-T................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.TATT----GAGG------GCCCGTC------CGTCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCA--------------------------------AAAGATATAACAGATTCGT................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................CCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCA--------------------------------AAAGATATAACAGATTCG.................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-GGTAGAATGAAGAGTTTCC....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CCACTGT--------------------------------------------------------------------GACGCATAC-----------------AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAACAGATTCGTTGAA-------AAG-TATGT............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGATTCGTTGAA-------AAG-TATGT............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GGTAGAATGAAGAGTTTCCGACC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAA-TGCCCA--------------------------------AAAGATATAACAGA.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TATGTAACA-GGTAGAATGAAGAG.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGATTCGTTGAA-------AAG-TAT..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTTTCT....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGTAGAATGAAGAGTTTC.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGAATGAAGA..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
ATATT----GAGG------GCCCGTC------CGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACA-GGTAGAATGAAGAGTTTC.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATGAA............2821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TC------CGTCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCCGTC------CGTCCACTGT--------------------------------------------------------------------GACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------AAAGATATAACAGATTCGT................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGT........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TT----GAGG------GCCCGTC------CGTCCACTGT--------------------------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAATGAAGAGT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAATGAAGA..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-GGTAGAATGAAGAGTTTC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TCCACTGT--------------------------------------------------------------------GACGCATAC-----------------AAACCGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTA...................25200.90180000000000000000000000000000000000000000000000001000100000000000000000000000000000200000000000001000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000005000000000003000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTAGAA................28190.63120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000141000000200000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAG..................25200.55110000000000000000000000000000000000000000000000000000000000200000000000000000000000200000000000000000000000000000000000000000000000000000000000003000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATGA.............2720.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATG..............2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGAATGAAG...........2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------AAG-TATGTAACA-GGTAGA.................21200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010060000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GG.....................23200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGT....................24200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGAAT...............2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGAC................27200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGA.................23200.3060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAG-TATGTAACA-GGTAG..................26200.2550000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAGAATGAT............2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATGTAACA-GGTAGAATGAA............2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAG-TATGTAACA-GGTAGAA................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACA-GGTAGAATGAA............2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTCGTTGAA-------AAG-TATGTAACA-GG.....................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAG-TATGTAACA-GGTAGA.................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGC.................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTAG..................22200.1020000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAA-------AAG-TATGTAACA-GGTAGA.................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAG-TATGTAACA-GGT....................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAGT.................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA-------AAG-TATGTAACA-GGTA...................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-G......................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GG.....................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGAA-------AAG-TATGTAACA-GGTA...................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAG-TATGTAACA-GGTAGA.................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTAC..................25200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-TATGTAACA-GGTAGAA................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGTT...................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACA-GGTAGA.................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTAACA-GGT....................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACACTTCCG----------AAAAA--AAT---GATTTT------------------------------------------------------------------------------AATTTT--G------------TATT-CCTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACT-TGTAGGACGTCGCGT........2417.00700000007000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACT-TGTAGGACGTCGCGT........2915.00500000022100000000
................................................................................................................................................AAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--C.........................................................................................................................................................................................................................................................................................................................................................................................2313.00300300000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACT-TGTAGGACGTCGCGTT.......2513.00300000001110000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACT-TGTAGGACGTCGC..........2711.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAG-TATGTAACT-TGTAGGACGT.............2411.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAG-TATGTA...........................17200.05100000000001000000
droSec2
AACGC----TG--------------------------------------------TTATTTTTGGTACT----------------------------------------------ATAC-----------------TAACTGGAAAGT--------------------------------------------------------------------------------TGAGATGAGCATGAACTT--CA-----------------------------------------------------------------------------------------------TGTTACTACGGCTAA--AAAGTGGCCCTAACAC----GAAAA------AAATT--A-------T------------------------------------------------------------------------------TTTAATTTT--G------TATTT-------CTT-TACTTAAAAAGTAATATAGGTTAATAGTAATGATT-GATGCTGCACACTAGCTTCGTTGAA-------AAG-TATGTAACT-TGTAGGACGTCGCGTTTCCGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TATGTAACT-TGTAGGACGTCG...........2311.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCACACTAGCTTCGTTGAA-------AA...................................2611.0010100
droYak3
GTTGA----ACTTA--A------------------------------------------------------------------------------------------------------CCTGAAATACAATTGCA-----------------------A-------------------------------------TCTTACATACCGCAATTTCTCTTCT---------------------------C-ACTC----------------------------------------------------------GATGTGAGTG------------AA---------------------------------------------------------------GCTTAA-----------------------------------------------------------------------------------A--CTTC--T------TATATTTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTATACTAGATTCGTTGAA-------AAG-TATGTAACA-GACAGAAGGAAGCGTTTCCGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................TTACATACCGCAATTTCTCTTCT---------------------------C-A......................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA-------AAG-TATGTAACA-GACAGAAGGAAG...........28200.10200000000002
droEre2
ACAAC----GACT---------------------------------------GCGTTAAGATGAGTTCTACTCCATTACTACTAAATGGAATTAATCGTACACACATGGTGA---------------------------------------------------------GTGTACA--CAAGATGAGTTCATATGTTCCTTATCA--------------------------------CCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------ATACC----------------------------------------------------------ATCTTTAACTT--T------TATTATTATACCCGT-TACTCGTAGA-----------------------GT-AAAAGGGTAAACTAGATTCGTTGAA-------AAA-TATGTAACA-GGCAGAAG-AAACCTTTCCGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAA-------AAA-TATGTAAC.........................2680.1311000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGT-TACTCGTAGA-----------------------GT-AAAAGG...............................................................25200.0511000000

Generated: 05/17/2015 at 11:16 PM