ID:

dps_764

 Coordinate:

2:24024208-24024358 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9 -15.9 -15.8 -15.7

Flybase annnotation

exon [Dpse\GA21775:7]; five_prime_UTR [Dpse\GA21775-u5]; exon [Dpse\GA21775:6]; five_prime_UTR [Dpse\GA21775-u5]; intron [Dpse\GA21775-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------##########################################################################################################################################################################
GGGAAAAAGTGCCAGTGTCGTATTTTGAAGCCATAATTTTAGCTGCAAACGTAAGTTGAAAACATTGAAGTGGATTTTAATGGTAGAACAAGAGGTATGCAGAGCTAAATATCAACTTTTATTCGCCATTTCTTTTTTCGTCTATGCCATCGTGCTGCTATTGCTGTGACTTTGTGTTGCTCTGTGCTGTGCAATTGTGTTGGTCGATTCGATTGTGTGGGACGGTCGGACGACGTACATATATTTTTTCA
*****************************************************************************.....((...(((.(((((..(((((((...................................................))).))))....))))).))).))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 V112
male body		 GSM343916
embryo
 M059
embryo
 GSM444067
head
 M062
head
 SRR902010
ovaries
.............................................................................TAATGGTAGAACAAGAGGTATGCA...................................................................................................................................................... 24 0 1 8.00 8 8 0 0 0 0 0 0 0
................................................................................TGGTAGAACAAGAGGTATGCAGAGC.................................................................................................................................................. 25 0 1 7.00 7 7 0 0 0 0 0 0 0
.............................................................................TAATGGTAGAACAAGAGGTATGC....................................................................................................................................................... 23 0 1 7.00 7 6 0 0 0 0 0 0 1
.............................................................................TAATGGTAGAACAAGAGGTATGCAGAGC.................................................................................................................................................. 28 0 1 5.00 5 5 0 0 0 0 0 0 0
..........................................................................TTTTAATGGTAGAACAAGAGGTATGC....................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0 0 0
............................................................................TTAATGGTAGAACAAGAGGTATGCA...................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................TTAATGGTAGAACAAGAGGTATGC....................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0
...........................................................................TTTAATGGTAGAACAAGAGGTATGC....................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0
..........................................................................TTTTAATGGTAGAACAAGAGG............................................................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0
.............................................................................TAATGGTAGAACAAGAGGTATGCAGAG................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................TGAAGTGGATTTTAATGGTAGAACAA................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................................................TTGCTGTGACTTTGTGTTGC....................................................................... 20 0 1 2.00 2 0 1 1 0 0 0 0 0
......................................................................TGGATTTTAATGGTAGAACAAGAGG............................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0
........GTGCCAGTGTCGTATTTTGA............................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0
.........TGCCAGTGTCGTATTTTGAAGCC........................................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 0 2 0 0 0
.........................................................................AGTTTAATGGTAGAACAAC............................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................TTAATGGTAGAACAAGAGGTATGCAGAG................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................ATTGCTGTGACTTTGTGTTGC....................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...AAAAAGTGCCAGTGTCGTA..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.........TGCCAGTGTTGTATTTTGAAGC............................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................................GTCTATGCCATCGTGCTGCTATTGCTGT.................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
..........GCCAGTGTCGTATTTTGAAGCC........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
.....AAAGTGCCAGTGTCGTATTTTGAAGCC........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0
.............................................................................TAATGGTAGAACAAGAGGTATGCAGAA................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................TGGTAGAACAAGAGGTATGCAGAG................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
......AAGTGCCAGTGTCGTATTTTGA............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....AAAGTGCCAGTGTCGTATTTTGAAGTCAT......................................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................TAATGGTAGAACAAGAGGTATGCG...................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................TGCCATCGTGCTGCTATTGCT...................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....AAAGTGCCAGTGTCGTATTTTG................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................TTGAAGTGGATTTTAATGGTAGAACA................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGATTGTGTGGGACGGTCGGACGACGT............... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................TAATGGTAGAACAAGAGGTATGCAG..................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................ATTTTAATGGTAGAACAAGAG............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................ATAATTTTAGCTGCAAACGA....................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................TGGTAGAACAAGAGGTATGC....................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.....AAAGTGCCAGTGTCGTATTTTGAAGCCA.......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0
.GGAAAAAGTGCCAGTGTCGTAT.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................TAATGGTAGAACAAGAGGTATGCAGA.................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
........GTGCCAGTGTCGTATTTTGAAGCC........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................TGGATTTTAATGGTAGAACA................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................TTCTTTTTTCGTCTATGCCA...................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................TAATGGTAGAACAAGAGGAATGC....................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
........GTGCCAGTGTCGTATTTTGAAGC............................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................TTAATGGTAGAACAAGAGGT........................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.........TGCCAGTGTCGTATTTTGAAGCCA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................TAATGGTAGAACAAGAGGTA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........TGCCAGTGTCGTATTTTGAA.............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
....AAAAGTGCCAGTGTCGTATTTTGA............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................GTGGATTTTAATGGTAGAACC................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGTGTTGGTCGATTCGAT...................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................GTGTAGTTCAATGGTAGAAC.................................................................................................................................................................. 20 3 4 0.75 3 0 3 0 0 0 0 0 0
................................................................................................................................................................................................AATTCTGTGGGTCGATTCGCT...................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................GTGTATTTCAATGGTAGAATAA................................................................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGTACGGTCGGACATCGTAC............. 20 3 3 0.33 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................TAACGCTGTGACTTTGAGTT......................................................................... 20 3 7 0.29 2 0 2 0 0 0 0 0 0
..........................................................................GTTTAATGGTAGAACAACGG............................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0
.....................................................................GTGTATTTCAATGGTAGA.................................................................................................................................................................... 18 2 8 0.25 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................................TGTTGCTCCGTGCTGTGCA.......................................................... 19 1 6 0.17 1 0 1 0 0 0 0 0 0
.................................................................TCAAGTGGATTTTACTGGTAT..................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0
..........................................................................GTTTAATGGTAGAACAACG.............................................................................................................................................................. 19 3 20 0.15 3 0 3 0 0 0 0 0 0
...................................................................ACGTGTATTTCAATGGTAGA.................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0
...............................................................................................................................ACTTCTTTTTTCGACTCTGCC....................................................................................................... 21 3 10 0.10 1 0 0 0 0 1 0 0 0
................................ATAATTTTAGCTCCTAACGA....................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0
........................................................................TAGTTTAATGGTAGAACAAC............................................................................................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0
..............................................................................ATTGTTGGAACAAGAGGTAT......................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GTGGGAAGGTCGGTCGCC................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................AGTTCAATGGTAGAACAAC............................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
............TAGTGTGGTATTGTGAAGC............................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0
.......................................................................ATAGTTTAATGGTAGAACAA................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

CCCTTTTTCACGGTCACAGCATAAAACTTCGGTATTAAAATCGACGTTTGCATTCAACTTTTGTAACTTCACCTAAAATTACCATCTTGTTCTCCATACGTCTCGATTTATAGTTGAAAATAAGCGGTAAAGAAAAAAGCAGATACGGTAGCACGACGATAACGACACTGAAACACAACGAGACACGACACGTTAACACAACCAGCTAAGCTAACACACCCTGCCAGCCTGCTGCATGTATATAAAAAAGT
***********************************************************************.....((...(((.(((((..(((((((...................................................))).))))....))))).))).))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 M059
embryo
 SRR902011
testis
 GSM343916
embryo
......................................................................ACCTAAAATTACCATCTTGT................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0
..................................................................................................CGTCTCGATTTATAGTTGAAA.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................AAAAAAGCAGATACGGTA..................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.......TCACGGTCACAGCATAAAACT............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................TACGGTAGCACGACGATAACG....................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................CGACGTTTGCATTCAACTTTT............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..............................................................................................CATACGTCTCGATTTATAGT......................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
.......................................................................................................................................AAAGCAGATACGGTAGCAGG................................................................................................ 20 1 1 1.00 1 0 0 1 0 0
...................................................................................................................................GAAAAAAGCAGATACGGTAG.................................................................................................... 20 0 1 1.00 1 0 0 0 0 1
..................................................................................................CGTCTCGATTTATAGTTGAA..................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
..................................................................................................................................................GGTAGCACGACGATAACGACACTG................................................................................. 24 0 1 1.00 1 0 0 1 0 0
..........................................................................AAAATTACCATCTTGTTCTCC............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
........................................................................................GTTCTCCATACGTCTCGATTT.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
............................................................................................TCCATACGTCTCGATTTATA........................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
................................................................................................................GTTGAAGGTAAGCGGTAAAGA...................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................................ACATGTATATAAAAAAGT 18 1 14 0.07 1 0 0 0 0 1
..........................................................................................................TTTATAGTTCAAAATAATC.............................................................................................................................. 19 2 14 0.07 1 1 0 0 0 0
.......................AGACCTAGGTATTAAAATCG................................................................................................................................................................................................................ 20 3 15 0.07 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:24024158-24024408 - dps_764 GGGAA------AA-----AGTGCCAGTGTCGTATTTTGAAGCC---ATAATTTTAGCTGCAAACGTAAGTTGA---A-AAC--ATTGAAGTGGATT------------------TTAATGG-----------------------------TA-GAACAAGAGGTATGCAGAGCTAAATAT-CAAC-T-TT-TATTCGCCATTTCTTT----------------------TTTCG---TCTATGCCATCGTGCTGC-T------------------------------------------------ATTGCTGTGACTTTGTGTTGCTCTGTGCT----GTGCAATTGTGTTG------GTCGATTC------GATTGTGT-GGGACGGTCGGACG---------ACGTACATATAT--TTTTTCA
droPer2 scaffold_3:6802674-6802924 - GGGAA------AA-----AGTGCCAGTGTCGTATTTTGAAGCC---ATAATTTTAGCTGCAAACGTAAGTTGA---A-AAC--ATTCAAGTGGATT------------------TTAATGG-----------------------------TA-GAACAAGAGGTATGCAGAGCTAAATAT-CAAC-T-TT-TATTCGCCATTTCTTT----------------------TTTCG---TCTATGCCATCGTGCTGC-T------------------------------------------------ATTGCTGTGACTTTGTGTTGCTCTGTGCT----GTGCAATTGTGTTG------GTCGATTC------GATTGTGT-GGGACGGTCGGACG---------ACGTACATATAT--TTTTTCA
droWil2 scf2_1100000004943:16532382-16532596 + GACCA------AA-T-TGGGTGCCAGTGTATTGAAAATACTGC-ATAAA-TTACATCTGCAAACGTA------AGTCACAC----------------------------------------GTTG--TTAAGTAAGGA--GAAACACTGGAA-AAACT-GTA-ATTGCGTTTCTAATTCT-TACC-TATTTTTTTCGCCGTCTCTTTTTCT---CGATTTCAT------TTTCATTGCCTTCGCC-TCGTTATTT-T---------------------------------------------------------------------------CT----TTGTGCGTGTGTTCATATGTGTGAATTGT-----------------------------------------GT--------------G
droVir3 scaffold_12855:5716673-5716974 - GGCCT----GTAC-----GGTGTCAGTCCAGCGATAATTACGG---AGAACACAAGTTGAAAATGTA------AGTG-AAT--------------ATTTCGACAACTCTATTTTACAATGG-----------------------------TG-ATTCGTACA--CCTGGCTGTAAATTGGCAACG-TTTT-TAAACGCCATTTCTTTTTATTTCTTTT-------T---CCTCTTCGCCTGG----TGGCTTTGC-CCTCCTCCTCTTTCTTCTCTTTTGCCACTGTCATTGTCATCGTGCTGC-------------CCGTGCTGCTC--TGCC----ATGCAACTGTGTTG------GTTCTCTCGATGTCGATTTTGTCGGAACGAACGAACGG------------ACG-TCTG--T-CTACG
droMoj3 scaffold_6540:6039476-6039743 - GACCT----GTAC-----GGTGTC-----------------------------AAATCGTAAATGTA------AGTG-CCACATTTAA---------------AACATATTTATTTAATAG-----------------------------TA-TATCAAACG--TTTAGTTACACGTAGCGAACA-TTCC-TTAACGCCATTTCTTTTTTTCTGAATT-----------TTTCATCGCCTGG----TGGTGCTGC-CCTTCTTCCCCTCTTCTCCTTGCACGACTGTCATTGTCATCGTGCTGCTA---------------------CTGTGCC----GTGCAATTGTGTTG------GTTCTCTCGATGTCGATTTTGTCGGAACTACCGAACGG------------ACG-TCTG--T-CTACG
droGri2 scaffold_14906:8287020-8287332 + GGGAGGCCTGTAA-----AGTGTCAGCCAAGTTATAAATACGGGCCAA---TTTAGCTGGAAATGTA------AGTA-GAA--------------GCGGAGACAACTCGTTTTCACAGTGC-----------------------------CA-AAACAGGCG--TTTGGCTGCGAATTGA-CAACATTTG-TAATCGCCATTTCTTTTTTTTTTCATTTTCTTTTTCTTCTTCGTCGCCTGG----TGGCTCTGC-CCTCCTC------------TTCTACGACTGTCATTGTCATCGTGCTGC---------------GTG-----C--TGCC----ATGCAACTGTGTTG------GTTCTCTCGATTTCGATTTTGTTGGAACTAACGAACGGACGTACGGACGGACATCTATGCTTCTTCC
droAna3 scaffold_13340:15418789-15419009 - AAAAG------GCGTTAAAGTGTCAGTGTCGTCGAGCTAACTT---TAATTTTTAGCTACAAACGTA------AGTA-TAG----------------------------------------AACCCATCAAAG---TC--CAAGAAGTGAAAATTTCA-CAA-TTTGCGACAC-AATTTC-CGTG-TATT-TTATCGCCATTTCCTT----------------------TTTCGTC------GCCATCGTGCTGC-T-------------TGA------------------------------------------CTTTGTGTTGCTCC--GCTGCGCCTGCAACTGTGTTG------GTCGGTTCT-----------------------------------------ACG-TTAT--TT-TTCG
droBip1 scf7180000396708:4611397-4611605 + ------------------AGTGTCAGTGTCGTCGAGCTAACTA---TATTTTATACCTGCAAACGTA------AGTA-GAT----------------------------------------CACCCATCAAAG---TC--CAATTAATGAAAATTCCA-TCA-TTTGCG-CGTCAATTTC-GGTG-TATT-TTATCGCCATTTCCTT----------------------TTTCGTC------GCCATCGTGCTGC-T-------------TGA------------------------------------------CTTTGTGTTGCTCC--GCAGCGCCTGCAACTGTGTTG------GTCGGTTCT-----------------------------------------ACG-TTAT--TT-TTCG
droKik1 scf7180000302387:453341-453566 - CGTAG------AA-----AGTGTCAGTGTCGTGGGCGAAACTT---AATTTTTTAACTTCTCACGTA------AGTA-GAC----------------------------------------T--G--CCCTGC-AGCC--GAAACATTGCGTTTTCCT-CCG-ATTGTGCTGCTAATTAT-TGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATTGCCTGCGCCATCGTGCTGC-TCTGCTCTGCTGCTTGA------------------------------------------CTTTGTG-------------CGACTGCAACTGTGTTG------GTTGGTTCT-----------------------------------------ACT-CTATTTTTCTTCG
droFic1 scf7180000454104:1443883-1444083 + CGTAG------AA-----AGTGCCAGTGTCGTGGGCGAAACGT---CATTTTTAAGCTGCAAACGTA------AGTA-CCC----------------------------------------AATG--CAGAGG---AGCTGAAGGACGTTAGTTAACA-TCA-CTGACCTTGCTAATTTC-AATG-TATT-TATTCGCCATTTCTTT----------------------TTTCGTCGCCTGCGCCATCGTGCTGTTT---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTCT
droEle1 scf7180000491047:243873-244071 + CGTAG------AA-----AGTGTCAGTGTCGTGGGAGAAACGC---CATTTTTAAGCTGCAAACGTA------AGTA-CCC----------------------------------------GATG--CAGCGG---TGATGGAGAAAACCAATTAATG-TCA-ACAGAGTTGCTAATTTC-CGTG-ATTT-TGTTCGCCATTTCTTT----------------------TTTCGTCGCCTGCGCCATCGTGCTGT-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTC-
droRho1 scf7180000777865:173472-173670 - CGTAG------AA-----AGTGTCAGTGTCGTGGGAGAAACGC---AATTTTTAAGCTGCAAACGTA------AGTA-CCC----------------------------------------AGTG--CAGAGG---AGATGGAGAAAGCCATTTTTTG-CCA-GTGGCGTTGCTAATTTT-CGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCGTCGCCTGCGCCATCGTGCTGT-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTCTTC-
droBia1 scf7180000302075:5414919-5415118 - CGTAG------AA-----GGTGTCAGTGTCGTGGGAGAAACGC---AATTTTCGAGCTGCAAACGTA------AGTA-CCC----------------------------------------GACG--CGGGGG---ACCTTCGAGAACGTGAATTTCG-CCA-ATGGCTATGCTAATTTC-CGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATCGCCTGCGCCATCGTGCTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-CTAT--TTTTTCT
droTak1 scf7180000415245:116542-116741 + CGTAG------AA-----AGTGTCAGTGTCGTGGGAGAAACGC---AATTTCCGAGCTGCTAACGTA------AGTA-CCC----------------------------------------GATG--CAGGGG---CACTAGAAGAAGCCCCATTTCG-CCC-ATGGCGATGCTAATTTC-CGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATCGCCTGCGCCATCGTGCTGT-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTCT
droEug1 scf7180000407136:288618-288817 + CGTAG------AA-----AGTGTCTGTGTCGTGGGAGAAACGC---AATTTTCCAACTGCAAACGTA------AGTA-CCA----------------------------------------TATG--CATAGA---TTTATGAAGAAGACAATTTTGG-GCA-ATTGCGATGCTAATTTC-CGTG-TATT-TTTACGCCATTTATTT----------------------TTTCATCGTCTGCGCCATCGTGCTGC-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTCT
dm3 chr3R:5403179-5403379 - CGTAG------AA-----AGTGTATGTGTCGTGGGAGAAACCC---GATTTACTTGCTAAAAACGTA------AGTA-TCC----------------------------------------TCTA--CCGAGG---ACCAAGAGAAACACTTTTTTCG-CCC-GTTGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCCTTT---------------------TTTCAATGCCTGCGCCATCGTGTTAT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTCG
droSim2 3r:15623448-15623647 + CGTAG------AA-----AGTGTGTGTGTCGTGGGAGAAACCC---AATTTACGAGCTAAAAACGTA------AGTA-TCC----------------------------------------GCTA--CCGAGG---ACCAAGAGAAACACTTTTTTCG-CCC-GTTGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCTTTT---------------------TTTCAATGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTC-
droSec2 scaffold_0:16493709-16493908 + CGTAG------AA-----AGTGTGTGTGTCGTGGGAGAAACCC---AATTTACGAGCTAAAAACGTA------AGTA-TCC----------------------------------------GCTA--CCGAGG---ACCAAGAGAAACACTTTTTTCG-CAC-GTTGCATTGCTAATTTT-ATTG-TATT-TTTTCGCCATTTCTTTT---------------------TTTCAATGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTC-
droYak3 3R:9454728-9454927 - CGTAG------AA-----AGTGTGTGTGTCGTGGGCGAAACCC---AATTTACGAGCTACAAACGTA------AGTA-CCC----------------------------------------GCCA--CCGAGC---ACAAAGAGAAACACTTTTTTCG-CCA-CTGGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATCGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGACTCT-----------------------------------------ACG-TTAT--TTTTTCT
droEre2 scaffold_4770:16197147-16197345 + CGTAG------AA-----AGTGTGTGTGTCGTGGGAGAAACCA---AATTTACGAACTACAAACGTA------AGTA-CCC----------------------------------------GCTA--CCGAGG---ACAAAGAAAAACCCTTTTTTCG-GCA-ATGGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCTT-----------------------TTTCATTGCCTGCGCCATCGTGCTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGGAA------AA-----AGTGCCAGTGTCGTATTTTGAAGCC---ATAATTTTAGCTGCAAACGTAAGTTGA---A-AAC--ATTGAAGTGGATT------------------TTAATGG-----------------------------TA-GAACAAGAGGTATGCAGAGCTAAATAT-CAAC-T-TT-TATTCGCCATTTCTTT----------------------TTTCG---TCTATGCCATCGTGCTGC-T------------------------------------------------ATTGCTGTGACTTTGTGTTGCTCTGTGCT----GTGCAATTGTGTTG------GTCGATTC------GATTGTGT-GGGACGGTCGGACG---------ACGTACATATAT--TTTTTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCA................................................................................................................................................................................................................................................................2418.0080000000080
......................................................................................................................TGG-----------------------------TA-GAACAAGAGGTATGCAGAGC............................................................................................................................................................................................................................................................2517.0070000000070
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGC.................................................................................................................................................................................................................................................................2317.0070000000160
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCAGAGC............................................................................................................................................................................................................................................................2815.0050000000050
..............................................................................................TT------------------TTAATGG-----------------------------TA-GAACAAGAGGTATGC.................................................................................................................................................................................................................................................................2615.0050000000050
..................................................................................................................TTAATGG-----------------------------TA-GAACAAGAGGTATGCA................................................................................................................................................................................................................................................................2513.0030000000030
..................................................................................................................TTAATGG-----------------------------TA-GAACAAGAGGTATGC.................................................................................................................................................................................................................................................................2413.0030000000030
...............................................................................................T------------------TTAATGG-----------------------------TA-GAACAAGAGGTATGC.................................................................................................................................................................................................................................................................2513.0030000000030
..............................................................................................TT------------------TTAATGG-----------------------------TA-GAACAAGAGG......................................................................................................................................................................................................................................................................2113.0030000000030
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCAGAG.............................................................................................................................................................................................................................................................2713.0030000000030
.....................................................................................TGAAGTGGATT------------------TTAATGG-----------------------------TA-GAACAA..........................................................................................................................................................................................................................................................................2612.0020000000020
..................................................................................................................................................................................................................................................................................................................TTGCTGTGACTTTGTGTTGC...................................................................................................2012.0020100001000
..........................................................................................TGGATT------------------TTAATGG-----------------------------TA-GAACAAGAGG......................................................................................................................................................................................................................................................................2512.0020000000020
...................GTGCCAGTGTCGTATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000200000
....................TGCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2312.0020020000000
..................................................................................................................TTAATGG-----------------------------TA-GAACAAGAGGTATGCAGAG.............................................................................................................................................................................................................................................................2811.0010000000010
.................................................................................................................................................................................................................................................................................................................ATTGCTGTGACTTTGTGTTGC...................................................................................................2111.0010000001000
...AA------AA-----AGTGCCAGTGTCGTA........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................G---TCTATGCCATCGTGCTGC-T------------------------------------------------ATTGCTGT................................................................................................................2811.0010100000000
.....................GCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...........AA-----AGTGCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCAGAA.............................................................................................................................................................................................................................................................2711.0010000000010
......................................................................................................................TGG-----------------------------TA-GAACAAGAGGTATGCAGAG.............................................................................................................................................................................................................................................................2411.0010000000010
............A-----AGTGCCAGTGTCGTATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCG................................................................................................................................................................................................................................................................2411.0010000000010
.................................................................................................................................................................................................................................................TGCCATCGTGCTGC-T------------------------------------------------ATTGCT..................................................................................................................2111.0010100000000
...........AA-----AGTGCCAGTGTCGTATTTTG...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
....................................................................................TTGAAGTGGATT------------------TTAATGG-----------------------------TA-GAACA...........................................................................................................................................................................................................................................................................2611.0010000000010
.............................................................................................................................................................................................................................................................................................................................................................................C------GATTGTGT-GGGACGGTCGGACG---------ACGT.................2711.0010000000010
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCAG...............................................................................................................................................................................................................................................................2511.0010000000010
.............................................................................................ATT------------------TTAATGG-----------------------------TA-GAACAAGAG.......................................................................................................................................................................................................................................................................2111.0010000000010
..............................................ATAATTTTAGCTGCAAACGA.......................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
......................................................................................................................TGG-----------------------------TA-GAACAAGAGGTATGC.................................................................................................................................................................................................................................................................2011.0010100000000
...........AA-----AGTGCCAGTGTCGTATTTTGAAGCC---A..........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010000
.GGAA------AA-----AGTGCCAGTGTCGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTATGCAGA..............................................................................................................................................................................................................................................................2611.0010000000010
...................GTGCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
..........................................................................................TGGATT------------------TTAATGG-----------------------------TA-GAACA...........................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................TTCTTT----------------------TTTCG---TCTATGCCA...................................................................................................................................................................................2011.0010000001000
...................GTGCCAGTGTCGTATTTTGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
..................................................................................................................TTAATGG-----------------------------TA-GAACAAGAGGT.....................................................................................................................................................................................................................................................................2011.0010000001000
....................TGCCAGTGTCGTATTTTGAAGCC---A..........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
...................................................................................................................TAATGG-----------------------------TA-GAACAAGAGGTA....................................................................................................................................................................................................................................................................2011.0010000000010
....................TGCCAGTGTCGTATTTTGAA.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
....A------AA-----AGTGCCAGTGTCGTATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
.........................................................................................GTGGATT------------------TTAATGG-----------------------------TA-GAACC...........................................................................................................................................................................................................................................................................2111.0010000000010
........................................................................................................................................................................................................................................................................................................................................................TTGTGTTG------GTCGATTC------GAT..................................................1911.0010100000000
droPer2
GGGAA------AA-----AGTGCCAGTGTCGTATTTTGAAGCC---ATAATTTTAGCTGCAAACGTAAGTTGA---A-AAC--ATTCAAGTGGATT------------------TTAATGG-----------------------------TA-GAACAAGAGGTATGCAGAGCTAAATAT-CAAC-T-TT-TATTCGCCATTTCTTT----------------------TTTCG---TCTATGCCATCGTGCTGC-T------------------------------------------------ATTGCTGTGACTTTGTGTTGCTCTGTGCT----GTGCAATTGTGTTG------GTCGATTC------GATTGTGT-GGGACGGTCGGACG---------ACGTACATATAT--TTTTTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................GTGCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2418.008800000
..........................................................................................................................................................................................................................................................................................................................................................................................GT-GGGACGGTCGGACG---------AC...................1813.003300000
.....................GCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
.......................CAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
.....................GCCAGTGTCGTATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
....................................................................................................................................................................................................................................................................................................................................................GCAATTGTGTTG------GTCGATTC------GATT.................................................2412.002000002
......................CCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................TGTGT-GGGACGGTCGGAC...............................1812.002200000
.......................CAGTGTCGTATTTTGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................TT----------------------TTTCG---TCTATGCCATCGTG..............................................................................................................................................................................2111.001010000
...................GTGCCAGTGTCGTATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................TGCCAGTGTCGTATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
....................TGCCAGTGTCGTATTTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................AGTGCCAGTGTCGTATTTTGAAGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................TTCAAGTGGATT------------------TTAATGG-----------------------------TA-................................................................................................................................................................................................................................................................................2111.001010000
....................................................TTAGCTGCAAACGTAAGTTGA---.............................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
GACCA------AA-T-TGGGTGCCAGTGTATTGAAAATACTGC-ATAAA-TTACATCTGCAAACGTA------AGTCACAC----------------------------------------GTTG--TTAAGTAAGGA--GAAACACTGGAA-AAACT-GTA-ATTGCGTTTCTAATTCT-TACC-TATTTTTTTCGCCGTCTCTTTTTCT---CGATTTCAT------TTTCATTGCCTTCGCC-TCGTTATTT-T---------------------------------------------------------------------------CT----TTGTGCGTGTGTTCATATGTGTGAATTGT-----------------------------------------GT--------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
GACCA------AA-T-TGGGTGCCAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................2113.00300030
.....................GCCAGTGTATTGAAAATA..................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
................................................................GTA------AGTCACAC----------------------------------------GTTG--TTAAGTAAGGA--G............................................................................................................................................................................................................................................................................................2711.00110000
...CA------AA-T-TGGGTGCCAGTGTATTG........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
..............T-TGGGTGCCAGTGTATTGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...CA------AA-T-TGGGTGCCAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................................................A-TTACATCTGCAAACGAG------................................................................................................................................................................................................................................................................................................................................................................1850.20100010
droVir3
GGCCT----GTAC-----GGTGTCAGTCCAGCGATAATTACGG---AGAACACAAGTTGAAAATGTA------AGTG-AAT--------------ATTTCGACAACTCTATTTTACAATGG-----------------------------TG-ATTCGTACA--CCTGGCTGTAAATTGGCAACG-TTTT-TAAACGCCATTTCTTTTTATTTCTTTT-------T---CCTCTTCGCCTGG----TGGCTTTGC-CCTCCTCCTCTTTCTTCTCTTTTGCCACTGTCATTGTCATCGTGCTGC-------------CCGTGCTGCTC--TGCC----ATGCAACTGTGTTG------GTTCTCTCGATGTCGATTTTGTCGGAACGAACGAACGG------------ACG-TCTG--T-CTACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................GG-----------------------------TG-ATTCGTACA--CCTGGCTGTAAATTGGCAACG-TTTT-TAAAC.....................................................................................................................................................................................................................................4311.001000000000000000000000000000000000000000000000000000000010000000
................................................................................................TTTCGACAACTCTATTTTACAATGG-----------------------------TG-A...............................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
..CCT----GTAC-----GGTGTCAGTCCAGCG........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................ACA--CCTGGCTGTAAATTGGCAACG-TTTT-TAAACGC...................................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000010000000000000000
...........AC-----GGTGTCAGTCCAGCGATA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
......................TCAGTCCAGCGATAATTACGG---...........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.............................AGCGATAATTACGG---AGAAC......................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
....T----GTAC-----GGTGTCAGTCCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
.............................AGCGATAATTACGG---AGAACA.....................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................TCGACAACTCTATTTTACAAT..................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................CA--CCTGGCTGTAAATTGGCAACG-TTTT-TAAACGCCATTTCTTTTTAT......................................................................................................................................................................................................................4711.001000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................TGTGTTG------GTTCTCTCGATGTCGATT.................................................2511.001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................C-CCTCCTCCTCTTTCTTCTCT.....................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.................................ATAATTACGG---AGAACACAAGT................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........GTAC-----GGTGTCAGTCCAGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
............................CAGCGATAATTACGG---AGAACA.....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
....T----GTAC-----GGTGTCAGTCCAGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...CT----GTAC-----GGTGTCAGTCCAGCGAT......................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................GTACA--CCTGGCTGTAAATTG......................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
..........TAC-----GGTGTCAGTCCAGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GTCATTGTCATCGTGCTGC-------------............................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GAACGAACGAACGG------------ACG-T............1811.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTGTCGGAACGAACGAACGG------------.................2111.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................TGTCATCGTGCTGC-------------CCGT........................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
................................GATAATTACGG---AGAACACAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GTCGATTTTGTCGGAACGAAC...................................2111.001000000100000000000000000000000000000000000000000000000000000000
................................GATAATTACGG---AGAACACAAGTTGA.............................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................GTCCAGCGATAATTACGG---A..........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
GACCT----GTAC-----GGTGTC-----------------------------AAATCGTAAATGTA------AGTG-CCACATTTAA---------------AACATATTTATTTAATAG-----------------------------TA-TATCAAACG--TTTAGTTACACGTAGCGAACA-TTCC-TTAACGCCATTTCTTTTTTTCTGAATT-----------TTTCATCGCCTGG----TGGTGCTGC-CCTTCTTCCCCTCTTCTCCTTGCACGACTGTCATTGTCATCGTGCTGCTA---------------------CTGTGCC----GTGCAATTGTGTTG------GTTCTCTCGATGTCGATTTTGTCGGAACTACCGAACGG------------ACG-TCTG--T-CTACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................GTAGCGAACA-TTCC-TTAACGC...................................................................................................................................................................................................................................2111.001100000
GACCT----GTAC-----GGTGTC-----------------------------AAATCGT.............................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................AACTACCGAACGG------------ACG-TCTG--.......2011.001000100
.......................................................................................................................................................................................................................................................................................................................................CTGTGCC----GTGCAATTGTGTT..........................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................AACTACCGAACGG------------ACG-TCTG--T-C....2211.001000010
droGri2
GGGAGGCCTGTAA-----AGTGTCAGCCAAGTTATAAATACGGGCCAA---TTTAGCTGGAAATGTA------AGTA-GAA--------------GCGGAGACAACTCGTTTTCACAGTGC-----------------------------CA-AAACAGGCG--TTTGGCTGCGAATTGA-CAACATTTG-TAATCGCCATTTCTTTTTTTTTTCATTTTCTTTTTCTTCTTCGTCGCCTGG----TGGCTCTGC-CCTCCTC------------TTCTACGACTGTCATTGTCATCGTGCTGC---------------GTG-----C--TGCC----ATGCAACTGTGTTG------GTTCTCTCGATTTCGATTTTGTTGGAACTAACGAACGGACGTACGGACGGACATCTATGCTTCTTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................AAGTTATAAATACGGGCCAA---TTTA..................................................................................................................................................................................................................................................................................................................................................................................2411.00110
droAna3
AAAAG------GCGTTAAAGTGTCAGTGTCGTCGAGCTAACTT---TAATTTTTAGCTACAAACGTA------AGTA-TAG----------------------------------------AACCCATCAAAG---TC--CAAGAAGTGAAAATTTCA-CAA-TTTGCGACAC-AATTTC-CGTG-TATT-TTATCGCCATTTCCTT----------------------TTTCGTC------GCCATCGTGCTGC-T-------------TGA------------------------------------------CTTTGTGTTGCTCC--GCTGCGCCTGCAACTGTGTTG------GTCGGTTCT-----------------------------------------ACG-TTAT--TT-TTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............GTTAAAGTGTCAGTGTCGTC........................................................................................................................................................................................................................................................................................................................................................................................................2012.002010010
.............GTTAAAGTGTCAGTGTCGTCGAGCT...................................................................................................................................................................................................................................................................................................................................................................................................2512.002100010
................AAAGTGTCAGTGTCGTCGAGC....................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................AACTT---TAATTTTTAGCTACAAA..........................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............TAAAGTGTCAGTGTCGTCGAGCTAAC................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................AAGTGTCAGTGTCGTCGAGCTA..................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...........................GTCGTCGAGCTAACTT---TAATTTTTAG.................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..AAG------GCGTTAAAGTGTCAGTGTCGTC........................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................TGTCAGTGTCGTCGAGCT...................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...................GTGTCAGTGTCGTCGAGCTAACT...............................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.............GTTAAAGTGTCAGTGTCGTCGA......................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
------------------AGTGTCAGTGTCGTCGAGCTAACTA---TATTTTATACCTGCAAACGTA------AGTA-GAT----------------------------------------CACCCATCAAAG---TC--CAATTAATGAAAATTCCA-TCA-TTTGCG-CGTCAATTTC-GGTG-TATT-TTATCGCCATTTCCTT----------------------TTTCGTC------GCCATCGTGCTGC-T-------------TGA------------------------------------------CTTTGTGTTGCTCC--GCAGCGCCTGCAACTGTGTTG------GTCGGTTCT-----------------------------------------ACG-TTAT--TT-TTCGSizeHit CountTotal NormTotal
No Reads
droKik1
CGTAG------AA-----AGTGTCAGTGTCGTGGGCGAAACTT---AATTTTTTAACTTCTCACGTA------AGTA-GAC----------------------------------------T--G--CCCTGC-AGCC--GAAACATTGCGTTTTCCT-CCG-ATTGTGCTGCTAATTAT-TGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATTGCCTGCGCCATCGTGCTGC-TCTGCTCTGCTGCTTGA------------------------------------------CTTTGTG-------------CGACTGCAACTGTGTTG------GTTGGTTCT-----------------------------------------ACT-CTATTTTTCTTCGSizeHit CountTotal NormTotal
No Reads
droFic1
CGTAG------AA-----AGTGCCAGTGTCGTGGGCGAAACGT---CATTTTTAAGCTGCAAACGTA------AGTA-CCC----------------------------------------AATG--CAGAGG---AGCTGAAGGACGTTAGTTAACA-TCA-CTGACCTTGCTAATTTC-AATG-TATT-TATTCGCCATTTCTTT----------------------TTTCGTCGCCTGCGCCATCGTGCTGTTT---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTCTSizeHit CountTotal NormTotal
No Reads
droEle1
CGTAG------AA-----AGTGTCAGTGTCGTGGGAGAAACGC---CATTTTTAAGCTGCAAACGTA------AGTA-CCC----------------------------------------GATG--CAGCGG---TGATGGAGAAAACCAATTAATG-TCA-ACAGAGTTGCTAATTTC-CGTG-ATTT-TGTTCGCCATTTCTTT----------------------TTTCGTCGCCTGCGCCATCGTGCTGT-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTC-SizeHit CountTotal NormTotal
No Reads
droRho1
CGTAG------AA-----AGTGTCAGTGTCGTGGGAGAAACGC---AATTTTTAAGCTGCAAACGTA------AGTA-CCC----------------------------------------AGTG--CAGAGG---AGATGGAGAAAGCCATTTTTTG-CCA-GTGGCGTTGCTAATTTT-CGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCGTCGCCTGCGCCATCGTGCTGT-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTCTTC-SizeHit CountTotal NormTotal
No Reads
droBia1
CGTAG------AA-----GGTGTCAGTGTCGTGGGAGAAACGC---AATTTTCGAGCTGCAAACGTA------AGTA-CCC----------------------------------------GACG--CGGGGG---ACCTTCGAGAACGTGAATTTCG-CCA-ATGGCTATGCTAATTTC-CGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATCGCCTGCGCCATCGTGCTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-CTAT--TTTTTCTSizeHit CountTotal NormTotal
No Reads
droTak1
CGTAG------AA-----AGTGTCAGTGTCGTGGGAGAAACGC---AATTTCCGAGCTGCTAACGTA------AGTA-CCC----------------------------------------GATG--CAGGGG---CACTAGAAGAAGCCCCATTTCG-CCC-ATGGCGATGCTAATTTC-CGTG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATCGCCTGCGCCATCGTGCTGT-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTCTSizeHit CountTotal NormTotal
No Reads
droEug1
CGTAG------AA-----AGTGTCTGTGTCGTGGGAGAAACGC---AATTTTCCAACTGCAAACGTA------AGTA-CCA----------------------------------------TATG--CATAGA---TTTATGAAGAAGACAATTTTGG-GCA-ATTGCGATGCTAATTTC-CGTG-TATT-TTTACGCCATTTATTT----------------------TTTCATCGTCTGCGCCATCGTGCTGC-T---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTGT-----------------------------------------ACG-TTAT--TTTTTCTSizeHit CountTotal NormTotal
No Reads
dm3
CGTAG------AA-----AGTGTATGTGTCGTGGGAGAAACCC---GATTTACTTGCTAAAAACGTA------AGTA-TCC----------------------------------------TCTA--CCGAGG---ACCAAGAGAAACACTTTTTTCG-CCC-GTTGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCCTTT---------------------TTTCAATGCCTGCGCCATCGTGTTAT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................ATGTGTCGTGGGAGAAACCC---GATTT......................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................AGTGTATGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000100000000000000000001000000000000000
......................TATGTGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000001000000000000000000000000000000000000
.....................GTATGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000
..............................................GATTTACTTGCTAAAAAC.........................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTGTATGTGTCGTGGGAGAA..................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTAT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GT.................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTATGTGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................AGTGTATGTGTCGTGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATGTGTCGTGGGAGAAACCC---GATT.......................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000
.......................ATGTGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............A-----AGTGTATGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GTGTATGTGTCGTGGGAGAAA.................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000
........................................................................................................................................................................................................................................CAATGCCTGCGCCATCGTGTT............................................................................................................................................................................2112.0020000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AA-----AGTGTATGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GTGTCGTGGGAGAAACCC---GATTT......................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTATGTGTCGTGGGAGAAACCC---G..........................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GAAACCC---GATTTACTTGCTAAAAACGA.......................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CATCGTGTTAT-G---------------------------------------------------------------------------------CTGCAACTG..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GTGTATGTGTCGTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GTTAT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGAT.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTGTATGTGTCGTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....G------AA-----AGTGTATGTGTCGTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AG------AA-----AGTGTATGTGTCGTGGG......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................TGTCGTGGGAGAAACCC---GATTTACTTGC................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGTGTCGTGGGAGAAACCC---GATTTAC....................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTA------AGTA-TCC----------------------------------------TCTA--CCGAGG---ACCAAGAG.........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GAAACCC---GATTTACTTGCTAAA............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTATGTGTCGTGGGAGAAACCC---GAT........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................AACCC---GATTTACTTGCTAAAAACGA.......................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GTGTATGTGTCGTGGGAGAAACCC---GATT.......................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TAT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTC................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................ATGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CATCGTGTTAT-G---------------------------------------------------------------------------------CTGCAACTGTGT...........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................CTA--CCGAGG---ACCAAGAG.........................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGTGGGAGAAACCC---GATTTACTTGC................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................GTGTATGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................AAACACTTTTTTCG-CCC-G.....................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................GTGTATGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................T-CATG-TATT-TTTTCGCCATTTCCT...........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTGTATGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CGTGTTAT-G---------------------------------------------------------------------------------CTGCAACTGTG............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................GTGGGAGAAACCC---GATTTACTTGC................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTATGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTATGTGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATGCCTGCGCCATCGTGTTAT-G---------------------------------------------------------------------------------C......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................AGTGTATGTGTCGTGGGAGAAA.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGTGTCGTGGGAGAAAC................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTAG------AA-----AGTGTATGTGTCGTG........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................TATGTGTCGTGGGAGAAACCC---G..........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTAG------AA-----AGTGTATGTGTCGTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................GTGGGAGAAACCC---GATTT......................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................T---------------------TTTCAATGCCTGCGCCA...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTAT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------...................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................AGTGTATGTGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTAG------AA-----AGTGTATGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
CGTAG------AA-----AGTGTATGTGTCGTGGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GTGTCGTGGGAGAAACCC---GATTTACT...................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGTAG------AA-----AGTGTATGTGTCGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AA-----AGTGTATGTGTCGTGGGAGAAA.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GAGAAACCC---GATTTACTTGC................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.GTAG------AA-----AGTGTATGTGTC...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.GTAG------AA-----AGTGTATGTGTCGTGGG......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................TGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........................TGTGTCGTGGGAGAAACCC---GATT.......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AG------AA-----AGTGTATGTGTCGTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGTGTCGTGGGAGAAACCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTCAATGCCTGCGCCATCGTGTTAT-G---------------------------------------------------------------------------------C......................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
CGTAG------AA-----AGTGTGTGTGTCGTGGGAGAAACCC---AATTTACGAGCTAAAAACGTA------AGTA-TCC----------------------------------------GCTA--CCGAGG---ACCAAGAGAAACACTTTTTTCG-CCC-GTTGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCTTTT---------------------TTTCAATGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTC-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........AA-----AGTGTGTGTGTCGTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
..................AGTGTGTGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.........................................................................................................................................................................................................................................AATGCCTGCGCCATCGTGTTG...........................................................................................................................................................................2111.00100000000001000000
..........................................................................................................................................................................................................TCTTTT---------------------TTTCAATGCCTG........................................................................................................................................................................................1811.00110000000000000000
.............................CGTGGGAGAAACCC---AATTTACGAG.................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
............A-----AGTGTGTGTGTCGTGGGAGAAACCC---AA.........................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000100000
...........................................................................................................................................................TCG-CCC-GTTGCATTGCTA..........................................................................................................................................................................................................................................................1811.00100000001000000000
........................TGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................................................................................................CTTTTTTCG-CCC-GTTGCATTGC............................................................................................................................................................................................................................................................2211.00100001000000000000
........................................................................................................................................................TTTTCG-CCC-GTTGCATTGCTA..........................................................................................................................................................................................................................................................2111.00100001000000000000
...........AA-----AGTGTGTGTGTCGTGGGAGAAA.................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
...................GTGTGTGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
............................TCGTGGGAGAAACCC---AAT........................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.....................GTGTGTGTCGTGGGAGAA..................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...........AA-----AGTGTGTGTGTCGTGGGAGT...................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
......................TGTGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................TTCAATGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CT.....................................................................................2811.00100010000000000000
.....................GTGTGTGTCGTGGGAGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
droSec2
CGTAG------AA-----AGTGTGTGTGTCGTGGGAGAAACCC---AATTTACGAGCTAAAAACGTA------AGTA-TCC----------------------------------------GCTA--CCGAGG---ACCAAGAGAAACACTTTTTTCG-CAC-GTTGCATTGCTAATTTT-ATTG-TATT-TTTTCGCCATTTCTTTT---------------------TTTCAATGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTC-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...AG------AA-----AGTGTGTGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2212.0020011
...................GTGTGTGTGTCGTGGGAGAAACCC---A..........................................................................................................................................................................................................................................................................................................................................................................................2512.0020200
.......................GTGTGTCGTGGGAGAAACCC---A..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................GTGTGTGTCGTGGGAGAAAC................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................GTGTGTGTGTCGTGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.....................GTGTGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................TGTGTGTGTCGTGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
.........................................................................................................................GCTA--CCGAGG---ACCAAGAGAAAC.....................................................................................................................................................................................................................................................................................2211.0010001
droYak3
CGTAG------AA-----AGTGTGTGTGTCGTGGGCGAAACCC---AATTTACGAGCTACAAACGTA------AGTA-CCC----------------------------------------GCCA--CCGAGC---ACAAAGAGAAACACTTTTTTCG-CCA-CTGGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCTTT----------------------TTTCATCGCCTGCGCCATCGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGACTCT-----------------------------------------ACG-TTAT--TTTTTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................GTGTGTGTCGTGGGCGAAACCC---A..........................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
....G------AA-----AGTGTGTGTGTCGTGGGCG....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................AGTGTGTGTGTCGTGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
....G------AA-----AGTGTGTGTGTCGTGGGCGAA..................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...AG------AA-----AGTGTGTGTGTCGTG........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.......................................................................................................................................................................................................................................................CGTGTTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTC................................................................2611.00100000010000
..................AGTGTGTGTGTCGTGGGCGA...................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................GTGTGTGTCGTGGGCGAAACCC---...........................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................GTGTGTCGTGGGCGAAACCC---A..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
......................................AACCC---AATTTACGAGCTACAAAC.........................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
..............................................AATTTACGAGCTACAAACGAG------G...............................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
droEre2
CGTAG------AA-----AGTGTGTGTGTCGTGGGAGAAACCA---AATTTACGAACTACAAACGTA------AGTA-CCC----------------------------------------GCTA--CCGAGG---ACAAAGAAAAACCCTTTTTTCG-GCA-ATGGCATTGCTAATTTT-CATG-TATT-TTTTCGCCATTTCTT-----------------------TTTCATTGCCTGCGCCATCGTGCTGT-G---------------------------------------------------------------------------------CTGCAACTGTGTTG------GTCGATTCT-----------------------------------------ACG-TTAT--TTTTTCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...AG------AA-----AGTGTGTGTGTCGTGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000020
...........AA-----AGTGTGTGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2012.0020001100
.....................GTGTGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
....G------AA-----AGTGTGTGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
........................................................................................................................................................................................................................................................GTGCTGT-G---------------------------------------------------------------------------------CTGCAACTGT.............................................................................1811.0011000000
.GTAG------AA-----AGTGTGTGTGTC...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
..................AGTGTGTGTGTCGTGGGAGAAACCA---...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
...................GTGTGTGTGTCGTGGGAGAAAC................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........AA-----AGTGTGTGTGTCGTGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..................AGTGTGTGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
............A-----AGTGTGTGTGTCGTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.............................CGTGGGAGAAACCA---AATTTAC....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..................AGTGTGTGTGTCGTGGGAGAAACC...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...AG------AA-----AGTGTGTGTGTCGTGGGAGAA..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100

Generated: 05/17/2015 at 11:12 PM