ID:

dps_761

 Coordinate:

2:24018586-24018857 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.1 -15.1 -15.0 -14.9

Flybase annnotation

intron [Dpse\GA26297-in]; exon [Dpse\GA26297:2]; CDS [Dpse\GA26297-cds]; CDS [Dpse\GA26297-cds]; exon [Dpse\GA26297:1]; intron [Dpse\GA26297-in]

No Repeatable elements found

Sense Strand Reads

---------#########################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTATTCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTTGCAATTTCTCCTGCTAGTCGGCGGTTACATAACTGGGAGAGCGCACGACCTTCACTAATTTTCATTATCGCACACACATTGAAATCCCAGCGACCATATAGTAGAAATCTGTTCGCAGGTACCATTAAATGAAATAATTTTGATTATTCCGAGCAACCAGCTTGGACGCGTCTGATAACTGAGTGTTTGTGTGTGCGTGTGCGTGTTCGTGTGGATTGTGGATTGTGGAAAACTTTGCTAACACATCTATCCCTTCCCGTCTAGGGTCTCGTTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAAT
*******************************************************************************************************************************************************************************************************...........((.((..((..((((((.((........))))))))..))....))..))**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 SRR902010
ovaries
 M059
embryo
 GSM444067
head
 SRR902012
CNS imaginal disc
 M062
head
...........................................................................................................................................................................................................................................................................TGTGGATCGTGGATTGTGGAAA................................................................................... 22 1 1 5.00 5 3 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................................................................TGGATCGTGGATTGTGGAAAA.................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GGATCGTGGATTGTGGAAAA.................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................AGCCGGACTGGGTGATTTGGCCAGGC............. 26 0 1 2.00 2 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................GATTATTCCGAGCAACCAGC......................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...............AAACGATCTTCTTCTGGGCGCCCGTAT.......................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GGTGATTTGGCCAGGCCAGCGG....... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................CGGACTGGGTGATTTGGCCAGGCC............ 24 0 1 1.00 1 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................CGTGTGGATCGTGGATTGTGGAAAAA................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGA........................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................ATTTCTCCTGCTAGTTGGCGG.................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................................GGGTGATTTGGCCACGCCAACG........ 22 2 1 1.00 1 0 0 1 0 0 0 0 0
...................GATCTTCTTCTGGGCGCCC.............................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGACA.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTG......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TGGGGTCTCGTTGCAGCCGGACTGGGT.......................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAGTGTTTGTGTGTGCGTGTGC................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GGTGATTTGGCCAGGCCAGCGGACAC... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGAC..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........GTCCCAAAACGATCTTCTTC....................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGATTTG.................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGAT....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TCGTTGCAGCCGGACTGGGTG......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GTCTCGTTGCAGCCGGACTGGGT.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GCCGGACTGGGTGATTTGGCCAGGCC............ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATTTGGCCGGGCCAGCGG....... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TGGCCAGGCCAGCGGACACA.. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGACACA.. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................TATTTGGCCAGGCCAGCGGAC..... 21 1 1 1.00 1 0 0 0 0 1 0 0 0
........GGTCCCAAAACGATCTTCTTCTGG.................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGTGGATCGTGGATTGTGGAAATCTTTT............................................................................. 28 3 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGACAC... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................CTGGGTGATTTGGCCAGGCCAGCGGAC..... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GATCGTGGATTGTGAAAAA.................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TGTGGAAAGCTTTGCTAACA....................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGACAC... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TTGGCCAGGCCAGCGGACAC... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GATCGTGGATTGTGGAAAA.................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................ATTATCGCACACACATTGAA....................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GTCTGGGTGATTTAGGCAGG.............. 20 3 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGTGGATCGTGGATTGTGGAAAT.................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TGGATCGTGGATTGTGGAAA................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGGATTGTGGATTGTGGAA.................................................................................... 20 0 5 0.40 2 0 0 0 0 0 0 2 0
.............................................................................................................................................................................................................TCAGATCAACCAGCTAGGAC................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
.............CAATCAGATCTTCTTCTGGGC.................................................................................................................................................................................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TGTTTGTGTGTGCGTGTGC................................................................................................................ 19 0 7 0.14 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTGTTGAAAAGCTTGCTAAC........................................................................ 20 3 11 0.09 1 0 1 0 0 0 0 0 0
...................GGTCTTCTTCTGGGCGAC............................................................................................................................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................TTACGGGCAACCCGCTTGG..................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GTTTGTGTGTGCGTGGGCGAG............................................................................................................. 21 2 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGTGGATCGTGGATTGTGGATAA.................................................................................. 23 2 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................CGTGTGGATCGTGGATTGTGGAA.................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TTGTGGATCGTGGATTGTGGAA.................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGTGGATCGTGGATTGTGGAAAC.................................................................................. 23 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

GGATAAGTCCAGGGTTTTGCTAGAAGAAGACCCGCGGGCATAAGTTCACCCATTCAAACGTTAAAGAGGACGATCAGCCGCCAATGTATTGACCCTCTCGCGTGCTGGAAGTGATTAAAAGTAATAGCGTGTGTGTAACTTTAGGGTCGCTGGTATATCATCTTTAGACAAGCGTCCATGGTAATTTACTTTATTAAAACTAATAAGGCTCGTTGGTCGAACCTGCGCAGACTATTGACTCACAAACACACACGCACACGCACAAGCACACCTAACACCTAACACCTTTTGAAACGATTGTGTAGATAGGGAAGGGCAGATCCCAGAGCAACGTCGGCCTGACCCACTAAACCGGTCCGGTCGCCTGTGTTA
****************************************************************************************************************...........((.((..((..((((((.((........))))))))..))....))..))******************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M022
male body
.................................................................................................................................................................................................................................................................................CACACCTAACACCTTTTGGAA.............................................................................. 21 2 1 1.00 1 1 0 0
....................................................................................................................................GTGTAACTTTAGGGTCGCT............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................................................................................................................CCCCAGAGCAACGTCGGCCTGC.............................. 22 2 1 1.00 1 1 0 0
..........................................................................................................................................................................................................................................................................................CACCTTTTGGAACGATTGTGT..................................................................... 21 1 1 1.00 1 0 1 0
............AGTTCTGCTAGATGAAGACCC................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0
.........................................................................................................TGGCAGTGATTAGAAGTAA........................................................................................................................................................................................................................................................ 19 2 2 0.50 1 1 0 0
...................CTAGGCGGAGACCCGCGGGCA............................................................................................................................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 1 0
......GGCCACGGTTTTGCTAGA............................................................................................................................................................................................................................................................................................................................................................ 18 2 2 0.50 1 1 0 0
..................................................................................................CGCGTACTGCAAGTGACTA............................................................................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0
........................................................................................................................................................................................................................GCGAACATGCGCAGGCTAT......................................................................................................................................... 19 3 12 0.08 1 0 0 1
.......................................................................................................................................................................................................................................................................................................GATTGGGAAGATAGGGAA........................................................... 18 2 15 0.07 1 1 0 0
..................................................................................................CGCGTGCTGGCAGGGATAA............................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0
.........................................................................................................................................................................................TCACTTTTTTAACACTAATA....................................................................................................................................................................... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:24018536-24018907 - dps_761 CCTA------TTCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTT---GCAA--------------TTTCTCCTGCT---------------AGTCGGCGGTTACATAA-CTGGGAGAGCGC-ACGACCTTCACTAATTTTCATTATCGCACACACATTG---------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCA-------------------------------TTAAATGA-AATAATTTTGATTATTCCGAGCAACCA--------------------------------------------------------------------------------------GCTTGGACGCGTCTGATA---ACTG----------------------------------------------------------------AG-TGT--TTGTG------TG--------------------------------TGCGTGTGCGTGT---------TC---------GTGTGGATTG-----TGGA------------------------------T---TGTG---GA---------------------AAACTTTGCT----------------------AAC------------------------------ACATCTATCC----CTTCCCGTCTAGGGTCTCGTTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAAT
droPer2 scaffold_3:6797060-6797424 - dpe_1415 CCTA------TTCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTT---GCAA--------------TTCCTCCTGCT---------------ATTCGGCAGTTACATAA-CTGGGAGAGCGC-ACGACCTTCACTAATTTTCATTATCGCACACACATTG---------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCA-------------------------------TTAAATGA-AATAATTTTGATTATTCCGAGCAACCA--------------------------------------------------------------------------------------GCTTGGACGCGTCTGATA---ACTG----------------------------------------------------------------AG-TGT--TTGTG------TG--------------------------------TGCGTGTGCGTGT---------TC---------GTGTGGATTG-----TGGA----------------------------------------------------------------AAACTTTGCT----------------------AAC------------------------------ACATCTATCC----CTTCCCGTCTAGGGTCTCGTTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAAT
droWil2 scf2_1100000004902:4677526-4677934 - T----------CTAGGTCCCAAGACTATATTCTTCTGGGCACCTTTGTTTAAATGGGTACGT-----------------------------------------------------------TATATAATCTTTGACAGCTCCACGACCTTCGCTAATATTCATTATCGCATT----------------------------------------------------------TGATAT---AAAAATCTGTGTGTTAGTGTACGGCTGCTTCTGTGATTAAAAGCAACAACTTGCATTGTTTTTGCTTTTTTATGATTATTATT-TGTTTATTT-ATTTTGATCCAACTTGTTGGGAATCAAACTCAAACTGTGTTGGTTCTGGCGAGGCACACGAGCGTTGACTCTGATGACTGATAACGACTATGACTG--------GGC--------------------------------------------------------------------------------AGA--TTCCATTGACGTC------------------------------------------------------------------TATACCAT--------------------------------------------------------------------------AAAGATTGTT----------------------ATA------------------------------ATCTTCATTA----TTTTCATTGCAGGGACTTGTAATAGCTGGTCTAAGTGATTTAACCCGTCCTGCGGATACAAT
droVir3 scaffold_12855:5711237-5711587 - dvi_4084 T----------TTAGGTCCAAAAACGATTTTCTTCTGGGCACCAATTTTCAAATGGGTAAGTTA---CCTA--------------TCAGACA-GAC-TGA-CGGA--------CAGCCTGTTACATAA-TTTCGACTG--C-GTGACCTTCGCTAATTTTCATTATCTCTGTCT-GCTGC--T--GATATACA-AAATCT--AAT-----------------GA------CATTAATACAGATATCTGCGAGTGTGTG--------------CGA------------------------ATTGCT-TTTTATG---ATTATT-TGTTTATT-CGAGCAGAAT--------------------------------------------------------------------------------------A--------ATCTTGTTG---GGTGTTGTTTTAGACAGCTGCCCGTTTAGAGAGCGCACGCGATAAGTCTACATCAGGGTTTGTTAGTGTG-TGT--TTATG------TG--------------------------------TGTGTGTGTGTGG---------TT---------GTATG---TG-----TGGA----------------------------------------------------------------AATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATT
droMoj3 scaffold_6540:6034758-6034891 - ACTATT---CGATAGGTCCAAAAACCGTTTTCTTTTGGGCACCAATAATTAAATGGGTAAGTAA---ACGATA------------ACAGACA-GAT-TGA-CAGA--------CAGCCTGTTACATAA-TACAGAC--TGC-ATGACCTTCGCTATTTTTCATTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:8292177-8292672 + CCGCTTTGTTTTTAGGTCCCAAAACGATTTTCTTCTGGGCACCTATCTTCAAATGGGTAAGCTG---ACGG--------------ACAGACA-GAT-GGA-CGGATAATCTATCAGCCAGTTACATAA-TTTGGAC--TGC-ATGACCTTCGCTAATTTGCATTATCACTGTCT-ACGAC--T--GATAGACA-ATATTT-TAAT-----------------GAAGAATTAT---AAACAGAAATCCGAGAGAGTGTCGCCGTCTGCT----CAG------------------------ATTGCT-TTTTATG---ATTGCT-GGTTTATTT-GCGTACAATAAACTCGTTGAGAG---------------------------------------C----------------GTCAGCGTCAATACCTG--------CGC---------------------------------------------------------------------------------AC--TTATATATACGTATATACATATATACACATATATGCCCCTGTGTGTGTGTGTGCGTGTTGAGATTGTGT---------TTTTACA------------A-----------------------------------------T-----------TAACGATTGCAAATTCTGCT----------------------AATGTTAACTAATCAACAGAAATTTACAACTTGATATACATTGTTTATT-----TTTAGGGTCTCGTCGCAGCTGGACTCAGTGATTTGGCGCGTCCGGCGGACACAAT
droAna3 scaffold_13340:15414147-15414597 - CTT------TTGTAGGGCCCAAGACCATCTTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTGG---CCAG--------------ACAGTCGGGACAGGA-AGG--------------GATTACATAA-CTGGGACAGCGA-GCGACCTTCGCTGATTTTCATTATCGCACACATACTACCGC--CCGCACTGTCAATCC-AAGC-----------------AG------TAGTAT---ACAAATCTGTGCGCAGGTG--------------CTA-------------------------------TTAAACGA-AATTATT-TGATTATTTTGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACTG----------------------------------------------------------------CCGTGT--GTCCA------TA--------------------------------TGAGCGTACATAT---------TCCGAGCTCCACTGTGCTTTA-----TAGAATTTTAAACAACCTACCTCGGAAATATGTCT---C---GCAGAAAACCAGTTTAGAAAGCACTCAACTTCACAAACACCAAACAAAGCAAAACACTGAA------------------------------ATGTCTACCT----TT-----TTCAGGGTCTTGTCATTGCAGGATTAAGTGACTTGGCCCGTCCGGCCGACACAAT
droBip1 scf7180000396708:4616169-4616617 + TC--------CGTAGGACCCAAGACTATCTTCTTCTGGGCACCCTTCTTCAAATGGGTAAGTGA---CCAG--------------ACAGACGGGACAGGA-AGG--------------GATTACATAA-CTGGGACATAGC-GCGACCTTCGCTGATTTTCATTATCGCACACATACTCG--C--GCGCACCATCAATCC-AAGC-----------------AG------CAGTAT---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAACGA-AATTATT-TGATTATTTTGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACTG----------------------------------------------------------------CC--GT--GTCCA------TG--------------------------------TGAGTGTACATGT---------TCCGAGCTATACTGTGACTTTGTTTATCGAATTTTAAACAAGCTACGTCGGAAATATGTCT---C---GCAGAAAACCAGTTTTGAATGCCTCCAAACACTCCAACAGCAAACAAAGCAAAAT-CTTAA------------------------------ATATCTACCT----TT-----TTTAGGGTCTTGTCATCGCAGGATTAAGTGACTTGGCCCGTCCGGCTGACTCAAT
droKik1 scf7180000302387:448564-448816 - CCTC------CAAAGGTCCCAAGACGATCTTCTTTTGGGCGCCCGTCTTCAAATGGGTGAGTTG---ACAA------------------GCG-AAG-TGA-AGG--------------GATTACATAA-CTTGGACAGCGCGGCGACCTTCACTGATTTTCGTTATCGCACCAACACATT--C--GCACGCAATAAATCCGCAGC-----------------AA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATTTTGATTATTCCGAGCAACCT--------------------------------------------------------------------------------------G------CGCGCTTGATA---ACCG----------------------------------------------------------------TC-AGCTGGTTTG------TG--------------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454104:1448150-1448433 + TT--------TTTAGGTCCCAAAACTGTTTTCTTCTGGGCCCCCGTCTTCAAATGGGTAAGTTG---GCAATAAAAGGCAACAAAAAAGCCA-GAC-AGA-AGG--------------GATTACATAA-TTCGGACAGCGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACGTT--C--CTTCACAACAAATCCAAAAC-----------------GA------CGGTAG---ACAAATCTGAACGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACTG----------------------------------------------------------------GACTGC--GTTAG------TG--------------------------------TTTTTAAGCGGATTGTGATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491047:248203-248480 + T----------CCAGGTCCTAAGACGATATTCTTCTGGGCACCCGTGTTCAAATGGGTAAGTTG---ACAG--------------AAA-CCA------GA-AGG--------------GATTACATAA-CTCGGACGACGG-GCGACCTTCGCTAATTTTCATTATCGCACACACACATT--C--ATTCGCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TAATTACTTCGAGCGAACT--------------------------------------------------------------------------------------G--------CGCCTGATA---ACTG----------------------------------------------------------------CC-CGC--GTTCG------TG--------------------------------TATGTGAGGAGATTGCGTTTGTTA---------ATTTCAATCG-----TGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777865:168950-169233 - AT-------TTCCAGGTCCCAAGACTATATTCTTTTGGGCACCCGTTTTCAAGTGGGTAAGTTG---ACAG--------------AAA-CCA-GAC-GGA-A-G--------------GATTACATAA-CTCGGACAGCGG-GCGACCTTCGCTGATTTTCATTATCGCACACATACATT--C--GTTCGCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTCCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCCTGATA---ACTG----------------------------------------------------------------TT-CGC--GTTCG------TG--------------------------------TTTGTGAGCGGATTGCGATTGTTG---------GTTTCAATTA-----TGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302075:5410173-5410480 - CTTC------CGCAGGTCCCAAGACCGTCTTCTTCTGGGCACCCGTCTTCAAGTGGGTAAGTTG---G-GTTGATGG--------GCCACCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATAC--------GTTCGCCATAAATCCGAAATAACAGCCGTAGACGGTAGA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGG-AATTATTTTGATTATTCCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCCTGATA---AGTG----------------------------------------------------------------GACTGA--CGTTG------TG--------------------------------TTTGTGCGCCAATAGCTATTGTTT---------CTTTGAATTA-----TGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droTak1 scf7180000415245:120924-121213 + CTTATA---TTTCAGGTCCAAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTTT---ACCA--------------AAAAACA-GAC-GGAAGGG--------------GATTACATAA-CTCGGACAACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATAC--------GTTCGCTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATAA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATGATAAGTG----------------------------------------------------------------AC-TGC--TTTTG------TG--------------------------------TTTGTGCGCGAAAGGCGATTGTTA---------CTTTGAATTA-----TGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000407136:293038-293293 + GCAAT----TTCTAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTTG---ACGA---------------GTGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATAC--------GTTCACTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CTA-------------------------------TTAAATGA-AATTATT-TCATTATTCCGAACAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------TT-TGC--GTTCG------TG--------------------------------TTAGTGAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:5398727-5399020 - TGA------TTCCAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTAG---ACAG--------------AAAGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATAACAACCG----------------------------------------------------------------CA-TAC--GGTTG------TG--------------------------------TTCGTGAGCGGATTGC------------------CTTCTGTTG-----TGGA------------------------------ACCCTATG---AA---------------------AA------------------------------------------------------------------------------------------------------------------------------------------A
droSim2 3r:15627804-15628091 + dsi_15910 T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAG---ACAG--------------AAACCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GGTTG------TG--------------------------------TTCGTGAGCGGATTGC------------------CTTCTGTTA-----TGGA------------------------------ACCCTATG---AA---------------------AA------------------------------------------------------------------------------------------------------------------------------------------A
droSec2 scaffold_0:16498068-16498327 + T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAG---ACAG--------------AAACCTA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCGGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GGTTG------TG--------------------------------TTCGTGAGCGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:9450212-9450476 - GC-------TTCCAGGTCCCAAGACGATATTCTTCTGGGCTCCCGTTTTCAAGTGGGTAAGTAGGAGACAG--------------AAAGCCA-GAC-GAA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GGTTG------TG--------------------------------TTTGTGAGCGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:16201514-16201781 + TGA------TTCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAGTGGGTAAGTACTAGACAG--------------AAGGCCA-GAC-GAA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--ACTATTCACCATAAATCCGAAAC-----------------GG------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GATTG------TG--------------------------------TTGGTGAGCGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCTA------TTCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTT---GCAA--------------TTTCTCCTGCT---------------AGTCGGCGGTTACATAA-CTGGGAGAGCGC-ACGACCTTCACTAATTTTCATTATCGCACACACATTG---------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCA-------------------------------TTAAATGA-AATAATTTTGATTATTCCGAGCAACCA--------------------------------------------------------------------------------------GCTTGGACGCGTCTGATA---ACTG----------------------------------------------------------------AG-TGT--TTGTG------TG--------------------------------TGCGTGTGCGTGT---------TC---------GTGTGGATTG-----TGGA------------------------------T---TGTG---GA---------------------AAACTTTGCT----------------------AAC------------------------------ACATCTATCC----CTTCCCGTCTAGGGTCTCGTTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGACTGGGTGATTTGGCCAGGC.............2612.0020100000001
....................................................................................................................................................................................................................................................................................................................................GATTATTCCGAGCAACCA--------------------------------------------------------------------------------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.....................AAACGATCTTCTTCTGGGCGCCCGTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTTGGCCAGGCCAGCGG.......2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTGGGTGATTTGGCCAGGCC............2411.0010001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGA........................2011.0010000010000
.........................GATCTTCTTCTGGGCGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGACA....2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTG.........................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------AG-TGT--TTGTG------TG--------------------------------TGCGTGTGC........................................................................................................................................................................................................................................................2311.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTTGGCCAGGCCAGCGGACAC...2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGAC.....2111.0010100000000
...............GTCCCAAAACGATCTTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGATTTG....................2411.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGAT.......................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGCAGCCGGACTGGGTG.........................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGTTGCAGCCGGACTGGGT..........................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGACTGGGTGATTTGGCCAGGCC............2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGGCCAGCGGACACA..2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGACACA..2411.0010100000000
..............GGTCCCAAAACGATCTTCTTCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGACAC...2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGTGATTTGGCCAGGCCAGCGGAC.....2711.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGACAC...2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCAGGCCAGCGGACAC...2011.0010100000000
.................................................................................................................................................................ATTATCGCACACACATTG---------------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTG-----TGGA------------------------------T---TGTG---GA---------------------A............................................................................................................................................2050.4020000000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--TTGTG------TG--------------------------------TGCGTGTGC........................................................................................................................................................................................................................................................1970.1410000001000
droPer2
CCTA------TTCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTT---GCAA--------------TTCCTCCTGCT---------------ATTCGGCAGTTACATAA-CTGGGAGAGCGC-ACGACCTTCACTAATTTTCATTATCGCACACACATTG---------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCA-------------------------------TTAAATGA-AATAATTTTGATTATTCCGAGCAACCA--------------------------------------------------------------------------------------GCTTGGACGCGTCTGATA---ACTG----------------------------------------------------------------AG-TGT--TTGTG------TG--------------------------------TGCGTGTGCGTGT---------TC---------GTGTGGATTG-----TGGA----------------------------------------------------------------AAACTTTGCT----------------------AAC------------------------------ACATCTATCC----CTTCCCGTCTAGGGTCTCGTTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................AAACGATCTTCTTCTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....................AAACGATCTTCTTCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTG.........................1912.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGAC.....2112.002100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGAC.....2011.001100000
........................................................................................................................................................................................................................................ATATAGTAGAAATCTGTTCGCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................ACGATCTTCTTCTGGGCGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGACGCGTCTGATA---ACTG----------------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGA........................2011.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTGGCCAGGCCAGCGGACA....2411.001100000
....................AAAACGATCTTCTTCTGGGCGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................CAAAACGATCTTCTTCTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGTTGCAGCCGGACTGGGTGA........................2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------TC---------GTGTGGATTG-----TGGA----------------------------------------------------------------.............................................................................................................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGTTGCAGCCGGACT..............................1911.001010000
.....................AAACGATCTTCTTCTGGGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droWil2
T----------CTAGGTCCCAAGACTATATTCTTCTGGGCACCTTTGTTTAAATGGGTACGT-----------------------------------------------------------TATATAATCTTTGACAGCTCCACGACCTTCGCTAATATTCATTATCGCATT----------------------------------------------------------TGATAT---AAAAATCTGTGTGTTAGTGTACGGCTGCTTCTGTGATTAAAAGCAACAACTTGCATTGTTTTTGCTTTTTTATGATTATTATT-TGTTTATTT-ATTTTGATCCAACTTGTTGGGAATCAAACTCAAACTGTGTTGGTTCTGGCGAGGCACACGAGCGTTGACTCTGATGACTGATAACGACTATGACTG--------GGC--------------------------------------------------------------------------------AGA--TTCCATTGACGTC------------------------------------------------------------------TATACCAT--------------------------------------------------------------------------AAAGATTGTT----------------------ATA------------------------------ATCTTCATTA----TTTTCATTGCAGGGACTTGTAATAGCTGGTCTAAGTGATTTAACCCGTCCTGCGGATACAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................AT---AAAAATCTGTGTGTTAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCGTCCTGCGGAT.....1812.00220000
...................CAAGACTATATTCTTCTGGGCACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
...........................................................................................................................TATAATCTTTGACAGCTCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................GTGTTAGTGTACGGCTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGGACTTGTAATAGCA...................................2111.00101000
...........................TATTCTTCTGGGCACCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.........................TATATTCTTCTGGGCACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................AAACTGTGTTGGTTCTGGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAGCTGGTCTAAGT..........................1811.00100100
droVir3
T----------TTAGGTCCAAAAACGATTTTCTTCTGGGCACCAATTTTCAAATGGGTAAGTTA---CCTA--------------TCAGACA-GAC-TGA-CGGA--------CAGCCTGTTACATAA-TTTCGACTG--C-GTGACCTTCGCTAATTTTCATTATCTCTGTCT-GCTGC--T--GATATACA-AAATCT--AAT-----------------GA------CATTAATACAGATATCTGCGAGTGTGTG--------------CGA------------------------ATTGCT-TTTTATG---ATTATT-TGTTTATT-CGAGCAGAAT--------------------------------------------------------------------------------------A--------ATCTTGTTG---GGTGTTGTTTTAGACAGCTGCCCGTTTAGAGAGCGCACGCGATAAGTCTACATCAGGGTTTGTTAGTGTG-TGT--TTATG------TG--------------------------------TGTGTGTGTGTGG---------TT---------GTATG---TG-----TGGA----------------------------------------------------------------AATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................TTCTTCTGGGCACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1513.003000000000000000000000000000000000000000000000000010000000200000
.............................TTCTTCTGGGCACCAATTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AGCAGAAT--------------------------------------------------------------------------------------A--------ATCTTGTTG---GGT.......................................................................................................................................................................................................................................................................................................................................................................................2112.002000000020000000000000000000000000000000000000000000000000000000
.....................AAACGATTTTCTTCTGGGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000100000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATATCTGCGAGTGTGTG--------------CGA------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
............................TTTCTTCTGGGCACCAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCAGGGTTTGTTAGTGTG-TG.................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................AAAACGATTTTCTTCTGGGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................TTCTGGGCACCAATTTTCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGTTAGTGTG-TGT--TTATA------...................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
.........................................................TAAGTTA---CCTA--------------TCAGACA-GAC-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATACAGATATCTGCGAGTGTGTG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
...............................................................A---CCTA--------------TCAGACA-GAC-TGA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGG---------TT---------GTATG---TG-----TGG..............................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................CCAAAAACGATTTTCTTCTGGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................AC-TGA-CGGA--------CAGCCTGTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTACATCAGGGTTTGTTAGTG......................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
............................TTTCTTCTGGGCACCAATTTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTAGAGAGCGCACGC..................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
........................CGATTTTCTTCTGGGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCGTTTAGAGAGCG.......................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................TAA-TTTCGACTG--C-GTGACCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............GGTCCAAAAACGATTTTCTTCTGGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GATATCTGCGAGTGTGTG--------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCCCGTTTAGAGAGCG.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.....................AAACGATTTTCTTCTGGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAGTGTG-TGT--TTATG------TG--------------------------------.................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................GACA-GAC-TGA-CGGA--------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGG---------TT---------GTATG---TG-----.................................................................................................................................................................................................................1940.502000000020000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------TGTGTGTGTGTGG---------TT---------GTATG---........................................................................................................................................................................................................................2140.502000000000000000000000000000000000000000000000000000000000002000
droMoj3
ACTATT---CGATAGGTCCAAAAACCGTTTTCTTTTGGGCACCAATAATTAAATGGGTAAGTAA---ACGATA------------ACAGACA-GAT-TGA-CAGA--------CAGCCTGTTACATAA-TACAGAC--TGC-ATGACCTTCGCTATTTTTCATTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................CCAAAAACCGTTTTCTTTTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
CCGCTTTGTTTTTAGGTCCCAAAACGATTTTCTTCTGGGCACCTATCTTCAAATGGGTAAGCTG---ACGG--------------ACAGACA-GAT-GGA-CGGATAATCTATCAGCCAGTTACATAA-TTTGGAC--TGC-ATGACCTTCGCTAATTTGCATTATCACTGTCT-ACGAC--T--GATAGACA-ATATTT-TAAT-----------------GAAGAATTAT---AAACAGAAATCCGAGAGAGTGTCGCCGTCTGCT----CAG------------------------ATTGCT-TTTTATG---ATTGCT-GGTTTATTT-GCGTACAATAAACTCGTTGAGAG---------------------------------------C----------------GTCAGCGTCAATACCTG--------CGC---------------------------------------------------------------------------------AC--TTATATATACGTATATACATATATACACATATATGCCCCTGTGTGTGTGTGTGCGTGTTGAGATTGTGT---------TTTTACA------------A-----------------------------------------T-----------TAACGATTGCAAATTCTGCT----------------------AATGTTAACTAATCAACAGAAATTTACAACTTGATATACATTGTTTATT-----TTTAGGGTCTCGTCGCAGCTGGACTCAGTGATTTGGCGCGTCCGGCGGACACAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGCGTCCGGCGGA......2011.00101
droAna3
CTT------TTGTAGGGCCCAAGACCATCTTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTGG---CCAG--------------ACAGTCGGGACAGGA-AGG--------------GATTACATAA-CTGGGACAGCGA-GCGACCTTCGCTGATTTTCATTATCGCACACATACTACCGC--CCGCACTGTCAATCC-AAGC-----------------AG------TAGTAT---ACAAATCTGTGCGCAGGTG--------------CTA-------------------------------TTAAACGA-AATTATT-TGATTATTTTGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACTG----------------------------------------------------------------CCGTGT--GTCCA------TA--------------------------------TGAGCGTACATAT---------TCCGAGCTCCACTGTGCTTTA-----TAGAATTTTAAACAACCTACCTCGGAAATATGTCT---C---GCAGAAAACCAGTTTAGAAAGCACTCAACTTCACAAACACCAAACAAAGCAAAACACTGAA------------------------------ATGTCTACCT----TT-----TTCAGGGTCTTGTCATTGCAGGATTAAGTGACTTGGCCCGTCCGGCCGACACAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGTGACTTGGCCCGTCCGGC.........2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---C---GCAGAAAACCAGTTTAGAAAGC.................................................................................................................................................2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAAGTGACTTGGCCCGTCC............2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGACTTGGCCCGTCCG...........2011.001100000
...................CAAGACCATCTTCTTTTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................CCATCTTCTTTTGGGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGCCCGTCCGGCCGACACA..2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTGACTTGGCCCGTCC............2011.001000010
...........................................CGTCTTCAAATGGGTAAGTGG---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGATTAAGTGACTTG....................1911.001000010
droBip1
TC--------CGTAGGACCCAAGACTATCTTCTTCTGGGCACCCTTCTTCAAATGGGTAAGTGA---CCAG--------------ACAGACGGGACAGGA-AGG--------------GATTACATAA-CTGGGACATAGC-GCGACCTTCGCTGATTTTCATTATCGCACACATACTCG--C--GCGCACCATCAATCC-AAGC-----------------AG------CAGTAT---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAACGA-AATTATT-TGATTATTTTGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACTG----------------------------------------------------------------CC--GT--GTCCA------TG--------------------------------TGAGTGTACATGT---------TCCGAGCTATACTGTGACTTTGTTTATCGAATTTTAAACAAGCTACGTCGGAAATATGTCT---C---GCAGAAAACCAGTTTTGAATGCCTCCAAACACTCCAACAGCAAACAAAGCAAAAT-CTTAA------------------------------ATATCTACCT----TT-----TTTAGGGTCTTGTCATCGCAGGATTAAGTGACTTGGCCCGTCCGGCTGACTCAATSizeHit CountTotal NormTotal
No Reads
droKik1
CCTC------CAAAGGTCCCAAGACGATCTTCTTTTGGGCGCCCGTCTTCAAATGGGTGAGTTG---ACAA------------------GCG-AAG-TGA-AGG--------------GATTACATAA-CTTGGACAGCGCGGCGACCTTCACTGATTTTCGTTATCGCACCAACACATT--C--GCACGCAATAAATCCGCAGC-----------------AA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATTTTGATTATTCCGAGCAACCT--------------------------------------------------------------------------------------G------CGCGCTTGATA---ACCG----------------------------------------------------------------TC-AGCTGGTTTG------TG--------------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TT--------TTTAGGTCCCAAAACTGTTTTCTTCTGGGCCCCCGTCTTCAAATGGGTAAGTTG---GCAATAAAAGGCAACAAAAAAGCCA-GAC-AGA-AGG--------------GATTACATAA-TTCGGACAGCGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACGTT--C--CTTCACAACAAATCCAAAAC-----------------GA------CGGTAG---ACAAATCTGAACGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACTG----------------------------------------------------------------GACTGC--GTTAG------TG--------------------------------TTTTTAAGCGGATTGTGATTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T----------CCAGGTCCTAAGACGATATTCTTCTGGGCACCCGTGTTCAAATGGGTAAGTTG---ACAG--------------AAA-CCA------GA-AGG--------------GATTACATAA-CTCGGACGACGG-GCGACCTTCGCTAATTTTCATTATCGCACACACACATT--C--ATTCGCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TAATTACTTCGAGCGAACT--------------------------------------------------------------------------------------G--------CGCCTGATA---ACTG----------------------------------------------------------------CC-CGC--GTTCG------TG--------------------------------TATGTGAGGAGATTGCGTTTGTTA---------ATTTCAATCG-----TGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AT-------TTCCAGGTCCCAAGACTATATTCTTTTGGGCACCCGTTTTCAAGTGGGTAAGTTG---ACAG--------------AAA-CCA-GAC-GGA-A-G--------------GATTACATAA-CTCGGACAGCGG-GCGACCTTCGCTGATTTTCATTATCGCACACATACATT--C--GTTCGCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTCCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCCTGATA---ACTG----------------------------------------------------------------TT-CGC--GTTCG------TG--------------------------------TTTGTGAGCGGATTGCGATTGTTG---------GTTTCAATTA-----TGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTTC------CGCAGGTCCCAAGACCGTCTTCTTCTGGGCACCCGTCTTCAAGTGGGTAAGTTG---G-GTTGATGG--------GCCACCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATAC--------GTTCGCCATAAATCCGAAATAACAGCCGTAGACGGTAGA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGG-AATTATTTTGATTATTCCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCCTGATA---AGTG----------------------------------------------------------------GACTGA--CGTTG------TG--------------------------------TTTGTGCGCCAATAGCTATTGTTT---------CTTTGAATTA-----TGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
CTTATA---TTTCAGGTCCAAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTTT---ACCA--------------AAAAACA-GAC-GGAAGGG--------------GATTACATAA-CTCGGACAACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATAC--------GTTCGCTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATAA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATGATAAGTG----------------------------------------------------------------AC-TGC--TTTTG------TG--------------------------------TTTGTGCGCGAAAGGCGATTGTTA---------CTTTGAATTA-----TGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCAAT----TTCTAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTTG---ACGA---------------GTGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATAC--------GTTCACTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CTA-------------------------------TTAAATGA-AATTATT-TCATTATTCCGAACAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------TT-TGC--GTTCG------TG--------------------------------TTAGTGAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGA------TTCCAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTAG---ACAG--------------AAAGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATAACAACCG----------------------------------------------------------------CA-TAC--GGTTG------TG--------------------------------TTCGTGAGCGGATTGC------------------CTTCTGTTG-----TGGA------------------------------ACCCTATG---AA---------------------AA------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................AGACGATATTCTTTTGGGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACGATATTCTTTTGGGCACCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................CAAATCTGAGCGCAGGTG--------------CCA-------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000
...............................................TTCAAATGGGTAAGTAG---ACAG--------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GA------TTCCAGGTCCCAAGACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................GACGATATTCTTTTGGGCACCCGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATCGCACACATACTAT--A--GTTCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGGATTGC------------------CTTCTGTTG-----T................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AAATCTGAGCGCAGGTG--------------CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GTAAGTAG---ACAG--------------AAAGCCA-GAC-GGA-TGG--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AG--------------AAAGCCA-GAC-GGA-TGG--------------GATTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AAATCTGAGCGCAGGTG--------------CCA-------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAACCG----------------------------------------------------------------CA-TAC--GGT...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------TTCGTGAGCGGATTGC------------------CTTCTG.........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................GACGATATTCTTTTGGGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CTTCAAATGGGTAAGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCT..................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATATTCTTTTGGGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AAGCCA-GAC-GGA-TGG--------------GAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACGATATTCTTTTGGGCACCCGTCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................TCTTTTGGGCACCCGTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTTGGGCACCCGTCTTCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGACGATATTCTTTTGGGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCT..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................TTCACCATAAATCCGAAAC-----------------GA------CGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC------------------CTTCTGTTG-----TGGA------------------------------ACCCTATG---A...................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CA-GAC-GGA-TGG--------------GATTACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTGAGCGGATTGC------------------CTT............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATAACAACC.......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TCTGAGCGCAGGTG--------------CCA-------------------------------TTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GGTAG---ACAAATCTGAGCGCAGGTG--------------CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................GACGATATTCTTTTGGGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGGGTAAGTAG---ACAG--------------AAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACGATATTCTTTTGGGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------------------CTTCTGTTG-----TGGA------------------------------ACCCTATG---....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCT..................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................CAG--------------AAAGCCA-GAC-GGA-TGG--------------GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................G---ACAG--------------AAAGCCA-GAC-GGA-TGG--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................GAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------CA-TAC--GGTTG------TG--------------------------------TTCGTGAGCGGATTG..................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................GACGATATTCTTTTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAG---ACAG--------------AAACCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GGTTG------TG--------------------------------TTCGTGAGCGGATTGC------------------CTTCTGTTA-----TGGA------------------------------ACCCTATG---AA---------------------AA------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................TACATAA-CTCGGACGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.....................................................................................................................................................................................................................................................................................................................................ATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------......................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............GGTCCCAAGACGATATTCTTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...............GTCCCAAGACGATATTCTTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GGTTG------TG--------------------------------TTCGTGAGCGGATT...................................................................................................................................................................................................................................................2211.00110000000000000000
................................................TCAAATGGGTAAGTAG---ACAG--------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
..........................................................................................................................................................................................................AAC-----------------GA------CGGTAG---ACAAATCTGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
droSec2
T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAG---ACAG--------------AAACCTA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCGGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GGTTG------TG--------------------------------TTCGTGAGCGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................CGATATTCTTCTGGGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
GC-------TTCCAGGTCCCAAGACGATATTCTTCTGGGCTCCCGTTTTCAAGTGGGTAAGTAGGAGACAG--------------AAAGCCA-GAC-GAA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--A--GTTCACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GGTTG------TG--------------------------------TTTGTGAGCGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................GGTAAGTAGGAGACAG--------------AAAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................AAGACGATATTCTTCTGGGCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................CTGGGCTCCCGTTTTCAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................GACGATATTCTTCTGGGCTCCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000100000
......................GACGATATTCTTCTGGGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................GATATTCTTCTGGGCTCCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............GTCCCAAGACGATATTCTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................GACGATATTCTTCTGGGCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................ACGATATTCTTCTGGGCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................ATTCTTCTGGGCTCCCGTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................GGTAG---ACAAATCTGTGCGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..........................................................................................................................................................................................................................................AG---ACAAATCTGTGCGCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.........................GATATTCTTCTGGGCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
droEre2
TGA------TTCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAGTGGGTAAGTACTAGACAG--------------AAGGCCA-GAC-GAA-TGG--------------GATTACATAA-CTCGGACGACGC-ACGACCTTCGCTGATTTTCATTATCGCACACATACTAT--ACTATTCACCATAAATCCGAAAC-----------------GG------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AATTATT-TGATTATTTCGAGCAACCT--------------------------------------------------------------------------------------G--------CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GATTG------TG--------------------------------TTGGTGAGCGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTGATA---ACCG----------------------------------------------------------------CA-TGC--GATTG------...................................................................................................................................................................................................................................................................................................2311.0011000000
.........................................................TAAGTACTAGACAG--------------AAGGCCA-GAC-GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
............................................................GTACTAGACAG--------------AAGGCCA-GAC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........................CGATATTCTTCTGGGCACCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
....................................................................................................................................................................................................................................................TCTGTGCGCAGGTG--------------CCA-------------------------------TTAAATGA-AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000

Generated: 05/17/2015 at 11:12 PM