ID:

dps_76

 Coordinate:

XR_group6:5906923-5906995 -

 Confidence:

candidate

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGACAAGCACAGACCATCAGTCCCAAAAACAATAAGCAGAGAAGAATAAAGTTGCGGCTTTTGAGCATCGCATCACATAGTCAAGAAAAACTTGGCTGACACCTCAAAAGCGGTAGCAGCTTATTTTTCTTCCTTTTATTTTTGGAAGCGCGTGTTCGTCGAGTGCGGGTGA

***********************************....(((((((((((.(((((.(((((((((............((((((((.....))))))))....))))))))).)))))...))))))))))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 GSM444067

head

 M062

head

 M059

embryo

 V112

male body		 GSM343916

embryo

 SRR902010

ovaries

 SRR902012

CNS imaginal disc
..................................................AGTTGCGGCTTTTGAGCATC....................................................................................................... 20 0 1 3.00 3 0 2 1 0 0 0 0 0
.................................................AAGTTGCGGCTTTTGAGCAT........................................................................................................ 20 0 1 3.00 3 1 1 0 0 1 0 0 0
......................................................................................................CCTCAAAAGCGGTAGCAGCT................................................... 20 0 1 3.00 3 0 1 0 0 2 0 0 0
..GAACAGCCCAGACCATCAGT....................................................................................................................................................... 20 3 7 2.29 16 16 0 0 0 0 0 0 0
.........ACAGACCATCAGTCCCAAAAAC.............................................................................................................................................. 22 0 1 2.00 2 1 0 0 1 0 0 0 0
.................................................AAGTTGCGGCTTTTGAGCA......................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................AAGTTGCGGCTTTTGAGCATC....................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................AGCAGAGAAGAATAAAGTT....................................................................................................................... 19 0 1 2.00 2 1 0 0 0 0 0 0 1
..........................................................................................................AAAAGCGGTAGCAGCTTATTTTTCTTCCT...................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................GGAGCAGCTTATTTTTCTTCCTTC.................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................TGGCTGACACCTCAAAAGC............................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................AAAGTTGCGGCTTTTGAGCATCG...................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................CTTTTATTTTTGGAAGCGCGTGTTC............... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................AAAGTTGCGGCTTTTGAGCA......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................TTTGGAAGCGCGTGTTCGTCGAGT........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................GAAGAATAAAGTTGCGGCTTTTGAGCATC....................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
.................TCAGTCCCAAAAACAATAAGCAGAGA.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................GAGAAAAACTTGGCTGACACCT.................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................ATAGAAGAATAAAGTTGCGGCTTTTGAG........................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
.......GCACAGACCATCAGTCCCAA.................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................AGCAGAGAAGAATAAAGTTG...................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TATCACATAGTCAAGAAAAACTTGGCT........................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................TTTGGAAGCGCGTGTTCGTCGAGTG....... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................AGTTGCGGCTTTTGAGCATCG...................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................CAATAAGCAGAGAAGAATAAAGT........................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................AGTTCCGGCTTTTGAGCATC....................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................ACCTCAAAAGCGGTAGCAGCT................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
....CAAGCACAGACCATCAGTCCCAAA................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................ATGTTGCGGCTTTTGAGCATCGCATC.................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................ATTTTTGGAAGCGCGTGT................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................AAAGTTGCGGCTTTTTAGCATCGC..................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0
..............................................................................................................................................TTGGAAGCGCGTGTTCGT............. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................AGCTGCTTATTTTTCTTCC....................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................AAGAAAAACTTGGCTGACACCTCAA................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................TTGCGGCTTTTGAGCATC....................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................AAAGTTGCGGCTTTTGAGCATCGCC.................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................ACTTGGCTGACACCTCAAAAGCGG........................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0
...................................................GTTGCGGCTTTTTAGCATCGCAT................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................GCATCGCATCACATAGTCAA........................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................ACCTCAAAAGCGGTAGCAGCTT.................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................ATAAAGTTGCGGCTTTTGAGCATC....................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................TAAGCAGAGAAGAATAAAGTTGCGGCT................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................GAAGCGCGTGTTCGTCGAGTGCGGGTG. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................AGCATCGCATCACATAGTC.......................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
................................ATAAGCAGAGAAGAATAAAGTTGCGGC.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................AAAGTTGCGGCTTTTGAGCATCGCCT................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................GCAGCTTATTTTTCTTCCTTTTAT................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................TCGCATCACATAGTCAAGAA..................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................AGCTTGTTTTTCTTCCTTT.................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0
...AACAGCCCAGACCATCAGT....................................................................................................................................................... 19 3 20 0.45 9 9 0 0 0 0 0 0 0
................................................AAAGTTGCGGCTTTTTGGCAC........................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0 0 0
..................................................................................................GACACCTCCAAAGCCGTTGC....................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0
.................................TAAGCAGGGAAGCATATA.......................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGCTGTTCGTGTCTGGTAGTCAGGGTTTTTGTTATTCGTCTCTTCTTATTTCAACGCCGAAAACTCGTAGCGTAGTGTATCAGTTCTTTTTGAACCGACTGTGGAGTTTTCGCCATCGTCGAATAAAAAGAAGGAAAATAAAAACCTTCGCGCACAAGCAGCTCACGCCCACT

************************************....(((((((((((.(((((.(((((((((............((((((((.....))))))))....))))))))).)))))...))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 M062

head
...............................................................................................................................................CCCTTCGCGCACAAGCAGCTC......... 21 1 1 1.00 1 0 1 0
..............GGTAGTCAGGGTTTTTGTT............................................................................................................................................ 19 0 1 1.00 1 1 0 0
........CTGTCTGGTAGTCATTGTTT................................................................................................................................................. 20 3 10 0.40 4 1 0 3
..........GTCTGGTAGTCATTGTTT................................................................................................................................................. 18 2 12 0.25 3 2 0 1
.....................................................................................................................GTCTAAAAAAAAGAAGGAAAACA................................. 23 3 8 0.13 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XR_group6:5906873-5907045 - dps_76 candidate ACGACAAG-CACAGACCATCAGTCC---------------------------CAAAAACAAT-------------AAGCAGAGAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGCATCACATA--------GTCAAGAAAAAC----------------TTGGCTGACACCTCAAAAG------------------------------------CGGTAGCAGCTTATTT-TTCTTCCTTTTATTTTTGGAAGCGCGTGTTCGTCGAGTGC---------------------------------------GGG-------------TG---------A
droPer2 scaffold_47:407049-407221 - ACGACAAG-CACAGACCATCAGTCC---------------------------CAAAAACAAT-------------AAGCAGAGAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGCATCACATA--------GTCAAGAAAAAC----------------TTGGCTGACACCTCAAAAG------------------------------------CGGTAGCAGCTTATTT-TTCTTCCTTTTATTTTTGGAAGCGCGTGTTCGTCGAGTGC---------------------------------------GGG-------------TG---------A
droWil2 scf2_1100000004511:8565996-8566184 - ACATCGAA-TCCC--CTACCAGTCG------------CC-----CTCCTCATTAAGAACAAG-------------GCGTAGAATAA--CAAAAAGT-TGCGGCACCCGCCAGAGAAGAAGA------AG-----ACG---------------A---GAGGCAA-------------------------------------AACCAAAAGCGAAGAAAAAGTGTGTTTTAGCAGGATCCAACTTGAGTTTTCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGCGCGC-GTGTGT---------------------------------------GTG-------------TG---------A
droVir3 scaffold_13049:22945414-22945594 + ACCAATAAATTGAAAGTAG-----------------------------CAGCCGAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCAACCAACAGCAGACGAAAGTTT--------------------TGCCGCACTCC----GTCGACAAACATCAGGAGAGGT--TACTTTATTTATTCTTGCTTATATTTTTGGAAGCTCGAGTGTGTA-GGTGT---------------------------------------GTGTGCGCGT-TTGAGGA---------A
droMoj3 scaffold_6680:17557168-17557346 + GCCGATTAATTGAAAATAG-----------------------------CAACCAAA------AACTCAATTCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCAACCAGC---AGACGAAAGCTT--------------------TGCCGCACTCCGTGTACAAAAC---AGCAGGAGAGGG--TACTTTATTTATTCTTGCTTTTATTTTTGGAAGCTCGAGAGTGTA-GGTGT---------------------------------------GTGTGTACGT-TTGAGAT---------A
droGri2 scaffold_15110:18219182-18219362 + ATTACCAA-CACCAA---G-----------------------------CAACCAAA------AACACAAG---------------------------------CCCTTCG-------------------------------------------------ACCACAAAA------GA---AAAAAGATCCGAAGG----------------AGAAGAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTATTTATTCTTGCTTTTATTTTTGGAAGCTCGTC----------GGTAGCAGCAGCAGTGTGTGTGTGTGTTGTAGGTGGTGTGTGTGTGCGCGTTTTGAGGAAGTTGAAGTG
droAna3 scaffold_13337:19468698-19468820 + GCAGCAGC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCAGAAAAACTAGAACAGT-TGCGGCACTCGCA-------------------------CC---------------A---CCAGCAACAACA------AC---A---------------ACCGCCGCCAAAAGCAACCCAGGAGT------------------CGCTCG--CTACCCGCTTCGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396360:663103-663242 + GCAGCAGC-AGTTAAGCAG-----------------------------CAGCCGCG------GACCGACCACGAGAAGCAGTGAAAATAGAACAGT-TGCGGCACTCGCA-----------------CC-----ACC---------------A---GCAACAACAACA------AC---A---------------ACCGCCGCCAACAGCAACCCAGGAGT------------------CGCTCG--CTACCCGCTTCGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302391:694427-694570 + CGAGCGCA-GC-AG----ACACCCCGAAGAACAGCAGGG----------------------------------------AAACGGA--CAATTTGT-TGCGGCACTCGCATCCACACAACA------AC-----ACC---------------A---GCAGCAGCAACA------ACAACA---------------GCC----------------------T------------------T--TTGCTTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA---------CCAACAACTGA---------------------------------------GAG-------------TG---------A
droFic1 scf7180000454113:2518245-2518370 + CCCGAAGAA----------------------CAGCAGGGAAAAC---------------------------------------GGA--TATTTAGT-GGCGGCACTCGCAACCACACAACA------CC-----ACC---------------ACCAACAGCAACAACA------TC------------AGCAGCAGCC----------------------T------------------CGCTCG-CTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------ACTA---------------------------------------AAA-------------TA---------A
droEle1 scf7180000491193:4058037-4058110 - ACAGCAAC-AAC--------------------------------------------------------------------------------------------------------------------------------------------A---GCAGCAGCAACA------ACAACA---------------ACC----------------------T------------------CGCTCA-TTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAA--C-AT-----------AA---------------------------------------CAT-------------CC---------A
droRho1 scf7180000773422:143810-143865 + ACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------A---GCAGCAGCAACA------ACAACA---------------ACC----------------------T------------------CGCTCA-TTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------
droBia1 scf7180000302428:4369530-4369638 - ACAGCAG------------------------------GGCAGAC---------------------------------------GGA--TAACCAGTGTGCGGCACTCGCG-------------------------------------------------ACCACAACA------ACAGCA---------------GCC----------------------T------------------C-CTCGTTTTTCCCGCTTTTCCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAACAC---CCCGTAGCACAC---------------------------------------ACA-------------TA---------A
droTak1 scf7180000415254:487788-487886 + AGGGCAGA-CGGA---------------------------------------------------------------------------TAGC----------------CAACCACACA-CACAGCCAACGGCCGACC---------------A---GCAGCAGCAACA------ACAACA---------------GCC----------------------T------------------C----GTTTTTCCCGCTTTTCGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------CAC---------------------------------------ACA-------------TA---------A
droEug1 scf7180000409466:4208508-4208635 - CCGAAAAA-----------------------CAGCAGGGAAGAC---------------------------------------GGA--TAATTAGTGTGCGGCACTCACAACCACACA-CACA----A------ACC---------------T---CCAACAACAACA------TCAACA---------------GCC----------------------T------------------CGCTCGCTTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA--CTCATA----------AT---------------------------------------CAG-------------TT---------A
dm3 chr3L:12118005-12118117 - CCGAATAC-----------------------CAGCCGGGCAGAC-----------------------------------------------------------ACGA-----------ACA------AC-----ACCAGCAGCAGCAGCACCACCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------AGCATTTCCCGCTTTTCGTTTTCGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------A
droSim2 3l:11816688-11816835 - GCAGCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACCAACAGCAGCAGCAGC----------------------------------------------------------------AGCATTTCCCGCTTTTCGCTTTCGTCGTCGCCGAACAACAA--------------ATAACAAAACCACGACAAACGAT---------------GGCCGATGCCGCGGAGAGTAAGCCACTGGCC----GCCGAAC------------------------------------------------------------------AG---------------------------------------CAG-------------CA---------G
droSec2 scaffold_0:4302767-4302911 - GCAGCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACCAACAGCA---GC---A---------------GC----------------------------------------------AGCATTTCCCGCTTTTCGTTTTCGTCGTCGCCGAACAACAA--------------ATAACAAAACCACGACAAACGAT---------------GGCCGATGCCGCGGAGAGTAAGCCACTGGCC----GCCGAAC------------------------------------------------------------------AG---------------------------------------CAG-------------CA---------G
droYak3 3L:12165950-12166055 - CAGACACG-A------------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCAGCAGCACCA------ACAACAACATCATCAGCAGC----------------AGCATCAGGCT------------------CGCTAGCATTTCCCGCTTTTCGTTCTCG---TCGCTGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------C
droEre2 scaffold_4784:12107263-12107372 - CGGGCAGA-CACAA--------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCACCAGCACCA------ACAACAACATCGTCCGCAGC----------------AGCATCAGGCT------------------CGCTAGCATTTCCCGCTTTTCGTTTTCG---TCGCAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACGACAAG-CACAGACCATCAGTCC---------------------------CAAAAACAAT-------------AAGCAGAGAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGCATCACATA--------GTCAAGAAAAAC----------------TTGGCTGACACCTCAAAAG------------------------------------CGGTAGCAGCTTATTT-TTCTTCCTTTTATTTTTGGAAGCGCGTGTTCGTCGAGTGC---------------------------------------GGG-------------TG---------ASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................AGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC.................................................................................................................................................................................................................................2013.0030001020000
............................................................................................AAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT..................................................................................................................................................................................................................................2013.0030100011000
........................................................................................................................................................................................................................................................................................................................................................CCTCAAAAG------------------------------------CGGTAGCAGCT.................................................................................................................2013.0030000012000
..........ACAGACCATCAGTCC---------------------------CAAAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020110000000
............................................................................................AAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA...................................................................................................................................................................................................................................1912.0020200000000
............................................................................................AAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC.................................................................................................................................................................................................................................2112.0020200000000
............................................................................AGCAGAGAAG--AATAAAGT-T...............................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020100000001
............................................................................................................................................................................................................................................................................................................................................................AAAAG------------------------------------CGGTAGCAGCTTATTT-TTCTTCCT...................................................................................................2911.0010010000000
...............................................................................................................................................................................................................................................................................................................................................TGGCTGACACCTCAAAAG------------------------------------C...........................................................................................................................1911.0010001000000
...........................................................................................AAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCG................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATTTTTGGAAGCGCGTGTTC............................................................................2511.0010010000000
...........................................................................................AAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA...................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGCGCGTGTTCGTCGAGT.....................................................................2411.0010100000000
..................................................................................GAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC.................................................................................................................................................................................................................................2911.0010001000000
..................TCAGTCC---------------------------CAAAAACAAT-------------AAGCAGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......G-CACAGACCATCAGTCC---------------------------CAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
............................................................................AGCAGAGAAG--AATAAAGT-TG..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGCGCGTGTTCGTCGAGTG....................................................................2511.0010100000000
.............................................................................................AGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCG................................................................................................................................................................................................................................2111.0010000010000
..........................................................CAAT-------------AAGCAGAGAAG--AATAAAGT-................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
.......................................................................................................................................................................................................................................................................................................................................................ACCTCAAAAG------------------------------------CGGTAGCAGCT.................................................................................................................2111.0010000001000
....CAAG-CACAGACCATCAGTCC---------------------------CAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGAAGCGCGTGT..............................................................................1811.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGCGCGTGTTCGT..........................................................................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................AAGAAAAAC----------------TTGGCTGACACCTCAA...................................................................................................................................................................2511.0010100000000
...............................................................................................T-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC.................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................AAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGCC..............................................................................................................................................................................................................................2511.0010000010000
............................................................................................................................................................................................................................................................................................................................AC----------------TTGGCTGACACCTCAAAAG------------------------------------CGG.........................................................................................................................2411.0010000000100
.............................................................................................................G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGCATCACATA--------GTCAA..........................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................ACCTCAAAAG------------------------------------CGGTAGCAGCTT................................................................................................................2211.0010000001000
.........................................................................................ATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC.................................................................................................................................................................................................................................2411.0010010000000
.............................................................T-------------AAGCAGAGAAG--AATAAAGT-TGCGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCGTGTTCGTCGAGTGC---------------------------------------GGG-------------TG---------.2711.0010100000000
............................................................................................................AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGCATCACATA--------GTC............................................................................................................................................................................................................1911.0010100000000
............................................................AT-------------AAGCAGAGAAG--AATAAAGT-TGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTATTT-TTCTTCCTTTTAT..............................................................................................2411.0010001000000
..............................................................................................................................................................................................................................................................................................TCGCATCACATA--------GTCAAGAA.......................................................................................................................................................................................................2011.0010000010000
droPer2
ACGACAAG-CACAGACCATCAGTCC---------------------------CAAAAACAAT-------------AAGCAGAGAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGCATCACATA--------GTCAAGAAAAAC----------------TTGGCTGACACCTCAAAAG------------------------------------CGGTAGCAGCTTATTT-TTCTTCCTTTTATTTTTGGAAGCGCGTGTTCGTCGAGTGC---------------------------------------GGG-------------TG---------ASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................GT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTC.................................................................................................................................................................................................................................1916.006600000
.........................................................................................ATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT..................................................................................................................................................................................................................................2314.004400000
.........................................................................................ATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C....................................................................................................................................................................................................................................2112.002200000
..............................................................................................GT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGC...............................................................................................................................................................................................................................2112.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGAGTGC---------------------------------------GGG-------------TG---------A1912.002002000
..................................................................................................................................................................................................................................................................................................ATCACATA--------GTCAAGAAAAAC----------------TT.................................................................................................................................................................................2212.002200000
............................................................................................AAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C....................................................................................................................................................................................................................................1811.001000010
.............................................................................................AGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCG................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGCTTATTT-TTCTTCCT...................................................................................................2211.001100000
................................................................................GAGAAG--AATAAAGT-TGCGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................................AAGAAAAAC----------------TTGGCTGACACCTCAAAA.................................................................................................................................................................2711.001010000
..................................................................................GAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT..................................................................................................................................................................................................................................2811.001000001
.........................................................................................ATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT...................................................................................................................................................................................................................................2211.001100000
......................................................................................................CTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGCATCACATA--------...............................................................................................................................................................................................................2211.001001000
.................................................................................AGAAG--AATAAAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT...................................................................................................................................................................................................................................2811.001010000
.....................................................................................................................................................................................................................................................................................................................AAGAAAAAC----------------TTGGCTGACACCT......................................................................................................................................................................2211.001001000
..............................................................................................................................................................................................................................................................................................TCGCATCACATA--------GTCAAGAAA......................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCGTCGAGTGC---------------------------------------GGG-------------T...........1911.001000001
............................................................................................AAGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGCA..............................................................................................................................................................................................................................2411.001000001
.............................................................................................AGT-TGCGGCTTTTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT..................................................................................................................................................................................................................................1911.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGAGTGC---------------------------------------GGG-------------TG---------.1811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTTCGTCGAGTGC---------------------------------------G...........................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................CGGTAGCAGCTTATTT-TTCTTC.....................................................................................................2211.001100000
droWil2
ACATCGAA-TCCC--CTACCAGTCG------------CC-----CTCCTCATTAAGAACAAG-------------GCGTAGAATAA--CAAAAAGT-TGCGGCACCCGCCAGAGAAGAAGA------AG-----ACG---------------A---GAGGCAA-------------------------------------AACCAAAAGCGAAGAAAAAGTGTGTTTTAGCAGGATCCAACTTGAGTTTTCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGCGCGC-GTGTGT---------------------------------------GTG-------------TG---------ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................................................................................................................................................................................................GCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2215.00520030
...........................................................AAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................1914.00440000
.................................................................................................................................................................................................................................................................TTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................1814.00400040
......................................................AGAACAAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00440000
.............................................................................GTAGAATAA--CAAAAAGT-TGCGGCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................2614.00440000
.................................................................................................TGCGGCACCCGCCAGAGAAGAAGA------..................................................................................................................................................................................................................................................................................................................................................................................................2414.00400400
............................................................................................................................................................................................................................................................AGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2313.00300030
..................................................ATTAAGAACAAG-------------GCGTAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300210
.........................................................ACAAG-------------GCGTAGAATAA--CAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00330000
.................................................................................................................................................................................................................................TTTAGCAGGATCCAACTTGAGTTT........................................................................................................................................................................................................................................................................2413.00300030
.......................................................GAACAAG-------------GCGTAGAATAA--CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00320100
................................................................................................................................................................................................................................................................TTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................1913.00300030
.........................................................ACAAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000
..........................................................................................................................................................................................................................................................CTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2513.00301020
.................................................................................................................................................................................................................................TTTAGCAGGATCCAACTTGAGTTTTCT.....................................................................................................................................................................................................................................................................2712.00200110
................................................................................................................................................................................................................GCGAAGAAAAAGTGTGTTTT.............................................................................................................................................................................................................................................................................................2012.00200020
.........................................................................................................................................................................................................................AAGTGTGTTTTAGCAGGATCCAAC................................................................................................................................................................................................................................................................................2412.00200020
.......................................................GAACAAG-------------GCGTAGAATAA--C........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00210010
.................................................................................................................................................................................................................................TTTAGCAGGATCCAACTTGAGT..........................................................................................................................................................................................................................................................................2212.00201100
.................................................................................................TGCGGCACCCGCCAGAGAAGAAGA------AG-----A..........................................................................................................................................................................................................................................................................................................................................................................................2712.00200110
..................................................ATTAAGAACAAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00210100
.............................................................................GTAGAATAA--CAAAAAGT-TGCGGCACCC......................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000
..................................................................................ATAA--CAAAAAGT-TGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................1812.00210010
.................................................CATTAAGAACAAG-------------GCGTAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
.........................................................................................................................................................................................................................................................TCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2612.00200200
......................................................AGAACAAG-------------GCGTAGAATAA--CAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00220000
..........................................................................................................................................................................................................................................................CTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--T...................................................................................2011.00100100
.................................................CATTAAGAACAAG-------------GCGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..........................................................................................................................................................................................................................................................CTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TA..................................................................................2111.00100010
...............................................................................................................................................................................................................................GTTTTAGCAGGATCCAACTTGAGTTT........................................................................................................................................................................................................................................................................2611.00100010
.................................................................................................................................................................AA-------------------------------------AACCAAAAGCGAAGAAAAAGT....................................................................................................................................................................................................................................................................................................2311.00100010
..............................................................................................................................................................................................................................................................CTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2111.00100010
............................................................................................................................................................................................................AAAAGCGAAGAAAAAGTGTGT................................................................................................................................................................................................................................................................................................2111.00100010
...........................................................................................................GCCAGAGAAGAAGA------AG-----ACG---------------A---GAGG.................................................................................................................................................................................................................................................................................................................................................................2411.00101000
................................................................................................................AGAAGAAGA------AG-----ACG---------------A---GAG..................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................AAAGCGAAGAAAAAGTGTG.................................................................................................................................................................................................................................................................................................1911.00100100
..............................................................................................................AGAGAAGAAGA------AG-----ACG---------------A---GA...................................................................................................................................................................................................................................................................................................................................................................1911.00100100
..............................................................................................................................................................................................................AAGCGAAGAAAAAGTGTGTTTT.............................................................................................................................................................................................................................................................................................2211.00100010
........................................................................................................................................................................................................................................GGATCCAACTTGAGTTTTCTAG...................................................................................................................................................................................................................................................................2211.00101000
....................................................................................................................GAAGA------AG-----ACG---------------A---GAGGCAA-------------------------------------.........................................................................................................................................................................................................................................................................................................................1811.00100010
............................................................................................................................................................................................................................................CCAACTTGAGTTTTCTAG...................................................................................................................................................................................................................................................................1811.00100001
.........................................................ACAAG-------------GCGTAGAATAA--CAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
....................AGTCG------------CC-----CTCCTCATTAAGAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
................................................................................................................................................................................................................................................................TTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGCGC............................................................................2111.00100010
.......................................................................................................................................................................................................................................AGGATCCAACTTGAGTTTTC......................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................AGAAGA------AG-----ACG---------------A---GAGGCAA-------------------------------------A........................................................................................................................................................................................................................................................................................................................2011.00101000
........................................................................................................................................................................................................................AAAGTGTGTTTTAGCAGGATCCAACTT..............................................................................................................................................................................................................................................................................2711.00100010
.......A-TCCC--CTACCAGTCG------------CC-----CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................................................................GAAAAAGTGTGTTTTAGCAGGATCC...................................................................................................................................................................................................................................................................................2511.00100010
...........................................................................GCGTAGAATAA--CAAAAAGT-................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................................TTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGCGCGC-GTG......................................................................2511.00101000
........................................................................................................................................................................................................AACCAAAAGCGAAGAAAAAG.....................................................................................................................................................................................................................................................................................................2011.00100010
..............................................................................................................................................................................................................AAGCGAAGAAAAAGTGTGTTT..............................................................................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................GTTTTAGCAGGATCCAACTTG.............................................................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................GTTTTAGCAGGATCCAACTTGAGT..........................................................................................................................................................................................................................................................................2411.00100010
..........................................................CAAG-------------GCGTAGAATAA--CAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..................................................................................ATAA--CAAAAAGT-TGCGGCACCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.......................................................GAACAAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
..........................................................................................................................................................................................................................................ATCCAACTTGAGTTTTCTAGC..................................................................................................................................................................................................................................................................2111.00100010
............................................................................................AAGT-TGCGGCACCCGCCAGA................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................................................TTAGCAGGATCCAACTTGAGT..........................................................................................................................................................................................................................................................................2111.00100100
...............................................................................................................................................................................................................................GTTTTAGCAGGATCCAACTT..............................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................................................................AA-------------------------------------AACCAAAAGCGAAGAA.........................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................GTTTTAGCAGGATCCAAC................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................TTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2011.00100100
........................................................AACAAG-------------GCGTAGAATAA--C........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................GTAGAATAA--CAAAAAGT-TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.............................................................................................................................................................................................................AAAGCGAAGAAAAAGTGT..................................................................................................................................................................................................................................................................................................1811.00100010
.................................................CATTAAGAACAAG-------------GCGTAGAATAA--C........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...............................................................................................................................................................................................................................GTTTTAGCAGGATCCAACTTGAGTTTT.......................................................................................................................................................................................................................................................................2711.00100010
.....................................................................................................................................................................................................................................................GTTTTCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------T..........................................................................................2011.00100010
.................................................................................AATAA--CAAAAAGT-TGCGGCACCC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.....................................................AAGAACAAG-------------GCGTAGAATAA--C........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.....................................................................................................................................................................................................................GAAAAAGTGTGTTTTAGCA.........................................................................................................................................................................................................................................................................................1911.00100100
........................................................AACAAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
..........................................................CAAG-------------GCGTAGAATAA--CAAAAAGT-TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...............................................................................................................GAGAAGAAGA------AG-----ACG---------------A---GAGGCA...............................................................................................................................................................................................................................................................................................................................................................2211.00101000
...........................................................................................AAAGT-TGCGGCACCCGCCAGA................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................TAGAATAA--CAAAAAGT-TGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
..................................................................................................................................................................................................................GAAGAAAAAGTGTGTTTTAGCAGGATC....................................................................................................................................................................................................................................................................................2711.00100100
..............................................................................................................AGAGAAGAAGA------AG-----ACG---------------A---GAGG.................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.................................................................................................................................................................AA-------------------------------------AACCAAAAGCGAAGAAAAAGTGT..................................................................................................................................................................................................................................................................................................2511.00100010
...........................................................................................................GCCAGAGAAGAAGA------AG-----ACG---------------.........................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................AAAAGT-TGCGGCACCCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................AAGTGTGTTTTAGCAGGATCC...................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................................................................GA------AG-----ACG---------------A---GAGGCAA-------------------------------------AACC.....................................................................................................................................................................................................................................................................................................................1911.00100010
...............................................................................................................................................................................................................................................................TTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGCGC............................................................................2211.00100010
..........................................................CAAG-------------GCGTAGAATAA--CAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
...........................................................AAG-------------GCGTAGAATAA--CAAAAAGT-TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
......................................................AGAACAAG-------------GCGTAGAATAA--CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.................................................................................................................................................................................................................................TTTAGCAGGATCCAACTTGA............................................................................................................................................................................................................................................................................2011.00101000
......AA-TCCC--CTACCAGTCG------------CC-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................................................................................................................GAAGAAGA------AG-----ACG---------------A---GAGG.................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................................................................................................................GTTTTCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--T...................................................................................2511.00100010
..........................................................................................................................................................................................................................AGTGTGTTTTAGCAGGATCCAACTTGA............................................................................................................................................................................................................................................................................2711.00100010
........................................................................................................................................................................................................................................................TTCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGC..............................................................................2711.00100010
..................CCAGTCG------------CC-----CTCCTCATTAAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
............................................................................................................................................................................................................................................................AGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGA..............................................................................2311.00110000
......................................................................................................................................................................................................................................................................TT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--TAGAGCGCGC-GT.......................................................................1911.00100010
.....................................................................................................................................................................................................................................GCAGGATCCAACTTGAGT..........................................................................................................................................................................................................................................................................1811.00100010
...........................................................................................AAAGT-TGCGGCACCCGCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.......................................................................................................................................................................................................................AAAAGTGTGTTTTAGCAGGATCCA..................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................................................................................................................................TCTAGCTTTTCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGG--T...................................................................................2111.00100010
.........................................................ACAAG-------------GCGTAGAATAA--CAAAAAGT-................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
...........................................................................................................GCCAGAGAAGAAGA------AG-----ACG---------------A---GAGGCA...............................................................................................................................................................................................................................................................................................................................................................2611.00100010
....................................................................................................................................................................................................................................AGCAGGATCCAACTTGAGTTTT.......................................................................................................................................................................................................................................................................2211.00100010
droVir3
ACCAATAAATTGAAAGTAG-----------------------------CAGCCGAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCAACCAACAGCAGACGAAAGTTT--------------------TGCCGCACTCC----GTCGACAAACATCAGGAGAGGT--TACTTTATTTATTCTTGCTTATATTTTTGGAAGCTCGAGTGTGTA-GGTGT---------------------------------------GTGTGCGCGT-TTGAGGA---------ASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................GAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC..................................................................................................................................................................................................................2313.0030011000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................A-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................1813.0030000000000000000000000000000000000001001000000000000000000000000000001000000000
.........TTGAAAGTAG-----------------------------CAGCCGAA------AACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030010000000000010000000000000000000000000000000000000000000000010000000000000000
........................................................................AAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2113.0030001000000000001000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GACGAAAGTTT--------------------TGCCGCACTCC----GTC...........................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000020000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AACATCAGGAGAGGT--TACT..................................................................................................................1912.0020000000000000001000000000000000000010000000000000000000000000000000000000000000
..........................................................................GA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................1912.0020001000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGCTCGAGTGTGT..........................................................................1912.0020000020000000000000000000000000000000000000000000000000000000000000000000000000
............AAAGTAG-----------------------------CAGCCGAA------AACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020010000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTTTATTTATTCTTGCTTATATTT............................................................................................2412.0020000000000000000000000000000000002000000000000000000000000000000000000000000000
............AAAGTAG-----------------------------CAGCCGAA------AACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020010000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGTGTGTA-GGTGT---------------------------------------G...........................1912.0020010000000000000000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAGTTGCGGCAACCAACAGC.............................................................................................................................................................................................2112.0020000000000000010000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACAAACATCAGGAGAGGT--TAC...................................................................................................................2112.0020000000000000000010010000000000000000000000000000000000000000000000000000000000
.CCAATAAATTGAAAGTAG-----------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020001000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGCTCGAGTGTGTA-GG......................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................GAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA.....................................................................................................................................................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAACATCAGGAGAGGT--TACTTTATTTATTCTTGCTTATATTTT...........................................................................................4311.0010000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................T--------------------TGCCGCACTCC----GTCGACA.......................................................................................................................................1911.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGGT--TACTTTATTTATTCTTGCT...................................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGCTTATATTTTTGGA.......................................................................................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GCACTCC----GTCGACAAACATC.................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...AATAAATTGAAAGTAG-----------------------------CAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------------------GTGTGCGCGT-TTGAGGA---------A2011.0010000000000100000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2811.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAAATTGAAAGTAG-----------------------------CAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTGTA-GGTGT---------------------------------------GTGTGCGCGT-T................2611.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CGACAAACATCAGGAGAGGT--TACTTTATTTATTCTTGCTTATATTTT...........................................................................................4711.0010000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTTATATTTTTGGAA......................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTCTTGCTTATATTTTTG.........................................................................................2311.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...AATAAATTGAAAGTAG-----------------------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
..................G-----------------------------CAGCCGAA------AACTCAAGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.........TTGAAAGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..........TGAAAGTAG-----------------------------CAGCCGAA------AACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................T--------------------TGCCGCACTCC----GTCGACAAACATC.................................................................................................................................2511.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCGAGTGTGTA-GGTGT---------------------------------------GTGT........................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...AATAAATTGAAAGTAG-----------------------------CAGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTTTGGAAGCTCGAGT..............................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTT--------------------TGCCGCACTCC----GTCGACAAACA...................................................................................................................................2511.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ACTCC----GTCGACAAACATCAGG..............................................................................................................................2111.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
......AAATTGAAAGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------------------GTGTGCGCGT-TTGAGG...........1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGAAAGTAG-----------------------------CAGCCGAA------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT---------------------------------------GTGTGCGCGT-TTGAG............1811.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
..........TGAAAGTAG-----------------------------CAGCCGAA------AACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA...................................................................................................................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTCC----GTCGACAAACATCAG...............................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GGTGT---------------------------------------GTGTGCGCGT-TTGAGGA---------.2411.0010000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................................................A-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCAACC...................................................................................................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGTAG-----------------------------CAGCCGAA------AACTCAAGCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AACAGCAGACGAAAGTTT--------------------TGCC.........................................................................................................................................................2211.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
...........GAAAGTAG-----------------------------CAGCCGAA------AACTCAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------------------------------------GTGTGCGCGT-TTGAGGG---------.2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------------------GTGTGCGCGT-TTGAGGA---------.1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............AAAGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGTGTGTA-GGTGT---------------------------------------............................1811.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
..........TGAAAGTAG-----------------------------CAGCCGAA------AACTCAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGAAGCTCGAGTGTGT..........................................................................2011.0010000000010000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAGTTT--------------------TGCCGCACTCC----GTCGACA.......................................................................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...................................................................AAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCGAGTGTGTA-GGC.....................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GAGGT--TACTTTATTTATT.........................................................................................................1811.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCTTGCTTATATTTTTGGAAGCT...................................................................................2711.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CAGCAGACGAAAGTTT--------------------TGC..........................................................................................................................................................1911.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
..............AGTAG-----------------------------CAGCCGAA------AACTCAAGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
........ATTGAAAGTAG-----------------------------CAGCCGAA------AAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
...........GAAAGTAG-----------------------------CAGCCGAA------AACTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GTTT--------------------TGCCGCACTCC----GTCGACAAA.....................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGAAGCTCGAGTGTGT..........................................................................2111.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
........ATTGAAAGTAG-----------------------------CAGCCGAA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATTTATTCTTGCTTATATTTT...........................................................................................2711.0010000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ACATCAGGAGAGGT--TACTTT................................................................................................................2011.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGAGGT--TACTTTATTTATTCTTGCTTATATTTT...........................................................................................3311.0010000000000000000000000000000000000000000001000000000000000000000000000000000000
...AATAAATTGAAAGTAG-----------------------------CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................C----GTCGACAAACATCAGGAGA...........................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....ATAAATTGAAAGTAG-----------------------------CAGCCGAA------AACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2511.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..................G-----------------------------CAGCCGAA------AACTCAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTGGAAGCTCGAGTGTGTA-........................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGTGTGTA-GGTGT---------------------------------------GT..........................2011.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
...........GAAAGTAG-----------------------------CAGCCGAA------AACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTTTGGAAGCTCGAGTGT............................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GCACTCC----GTCGACAAACAT..................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................A------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC..................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CCGAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AACATCAGGAGAGGT--TACTTTAT..............................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................GA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCA......................................................................................................................................................................................................2011.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................T--------------------TGCCGCACTCC----GTCGACAA......................................................................................................................................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..........TGAAAGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGAAAGTTT--------------------TGCCGCACTCC----GTCGAC........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCGAGTGTGTA-GGT.....................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCAACC...................................................................................................................................................................................................2511.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTCC----GTCGACAAACATCAGGAG............................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TT--------------------TGCCGCACTCC----GTCGACAA......................................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAGTTGCGGCAACCAACA...............................................................................................................................................................................................1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGCTCGAGTGTGTA-GGT.....................................................................2311.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CACTCC----GTCGACAAACATCAGGA.............................................................................................................................2311.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCGAGTGTGTA-GGTGT---------------------------------------GTGT........................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........GAAAGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTCC----GTCGACAAACATCAGGA.............................................................................................................................2111.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ACGAAAGTTT--------------------TGCCGCAC.....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
....ATAAATTGAAAGTAG-----------------------------CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTTTGGAAGCTCGAGTGT............................................................................2311.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
..CAATAAATTGAAAGTAG-----------------------------CAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGAAGCTCGAGTGTGTA-GG......................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGAAAGTAG-----------------------------CAGCCGAA------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGCTTATATTTTTGGA.......................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTAG-----------------------------CAGCCGAA------AACTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
........ATTGAAAGTAG-----------------------------CAGCCGAA------AACTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGCTCGAGTGTGT..........................................................................1811.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTGTGTA-GGTGT---------------------------------------GTGTG.......................2111.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................GAA------AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAA................................................................................................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAGTTGCGGCAACCAACAGCAGAC.........................................................................................................................................................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AGCAGACGAAAGTTT--------------------TGCCGCACTC...................................................................................................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CGCACTCC----GTCGACAAACATCAGG..............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................GCAGACGAAAGTTT--------------------TGCCGCACTCC----GTC...........................................................................................................................................2811.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAACATCAGGAGAGGT--TACTTTAT..............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................GCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GCCGAA------AACTCAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GAAAGTTT--------------------TGCCGCACTCC----GTC...........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................AACTCAAGCCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC..................................................................................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTGTA-GGTGT---------------------------------------GTGT........................1920.5010000000000000000000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTGTA-GGTGT---------------------------------------GTGTGC......................2120.5010000000000010000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGTA-GGTGT---------------------------------------GTGTG.......................1870.1410000000000100000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTA-GGTGT---------------------------------------GTGTGCG.....................1990.1110000000010000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
GCCGATTAATTGAAAATAG-----------------------------CAACCAAA------AACTCAATTCAAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGCAACCAGC---AGACGAAAGCTT--------------------TGCCGCACTCCGTGTACAAAAC---AGCAGGAGAGGG--TACTTTATTTATTCTTGCTTTTATTTTTGGAAGCTCGAGAGTGTA-GGTGT---------------------------------------GTGTGTACGT-TTGAGAT---------ASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTGGAAGCTCGAGAGT............................................................................2211.001000010
..........................................................................................................................................................................................................................................................................................................................................................................ACTCCGTGTACAAAAC---AGCA................................................................................................................................2011.001000010
...GATTAATTGAAAATAG-----------------------------CAACCAAA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-GGTGT---------------------------------------GTGTGTACGT-T................1911.001100000
..............AATAG-----------------------------CAACCAAA------AACTCAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......TAATTGAAAATAG-----------------------------CAACCAAA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................AAGTTGCGGCAACCAGC---AGAC.........................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................GTACAAAAC---AGCAGGAGAGGG--TACT..................................................................................................................2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................ACAAAAC---AGCAGGAGAGGG--TACTTTATT.............................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTATTTATTCTTGCTTTTATTTTT..........................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................ACAAAGTTGCGGCAACCAGC---AGACGA.......................................................................................................................................................................................2611.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAGTGTA-GGTGT---------------------------------------GTGT........................1921.002000002
............................................................................................................................................................................................................................................................................................................AACAAAGTTGCGGCAACCAGC---AGA..........................................................................................................................................................................................2411.001000001
....................................................................................................................................................................................................................................................................................................................TGCGGCAACCAGC---AGACGAAAGCTT--------------------.............................................................................................................................................................2511.001000001
...GATTAATTGAAAATAG-----------------------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTTTTGGAAGCTCGAGAGT............................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................CTT--------------------TGCCGCACTCCGTGTAC............................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTCTTGCTTTTATTTTT..........................................................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................CGAAAGCTT--------------------TGCCGCACTCCGT................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................AAAGTTGCGGCAACCAGC---.............................................................................................................................................................................................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGCTTTTATTTTTGGAAGCT...................................................................................2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGCTCGAGAGTGTA-GGTGT---------------------------------------............................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-GGTGT---------------------------------------GTGTGTACGT-.................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-GGTGT---------------------------------------GTGTGTACGT-TTGAG............2311.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................AAC---AGCAGGAGAGGG--TACTTT................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................AAAGTTGCGGCAACCAGC---AGACGAA......................................................................................................................................................................................2511.001100000
........................................................................AAGA-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAGTTGCGGC.......................................................................................................................................................................................................2111.001100000
droGri2
ATTACCAA-CACCAA---G-----------------------------CAACCAAA------AACACAAG---------------------------------CCCTTCG-------------------------------------------------ACCACAAAA------GA---AAAAAGATCCGAAGG----------------AGAAGAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTATTTATTCTTGCTTTTATTTTTGGAAGCTCGTC----------GGTAGCAGCAGCAGTGTGTGTGTGTGTTGTAGGTGGTGTGTGTGTGCGCGTTTTGAGGAAGTTGAAGTGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGCTCGTC----------GGTAGCA..............................................................2011.00101
.....................................................AAA------AACACAAG---------------------------------CCCTTCG-------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................1811.00110
......................................................................................................................................................................................AAGATCCGAAGG----------------AGAAGA.........................................................................................................................................................................................................................................................................................................1811.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGGTGGTGTGTGTG.........................2011.00101
.........CACCAA---G-----------------------------CAACCAAA------AACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTGTGTGTGTGTG...........................................1950.20101
droAna3
GCAGCAGC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCAGAAAAACTAGAACAGT-TGCGGCACTCGCA-------------------------CC---------------A---CCAGCAACAACA------AC---A---------------ACCGCCGCCAAAAGCAACCCAGGAGT------------------CGCTCG--CTACCCGCTTCGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................................................................................................AACCCAGGAGT------------------CGCTCG--CTACCCGC..................................................................................................................................................................................................................................................................2513.003120000
......GC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002
..................................................................................................................................................................................................................AACCCAGGAGT------------------CGCTCG--CT........................................................................................................................................................................................................................................................................1912.002000011
................................................................................................................................................................................................................GCAACCCAGGAGT------------------CGCTCG--CTACC.....................................................................................................................................................................................................................................................................2412.002200000
......GC-CGCGG-------------------------------------------------ACCGACCACGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
...GCAGC-CGCGG-------------------------------------------------ACCGACCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
....................................................................................................................................................................................................................CCCAGGAGT------------------CGCTCG--CTACCCGCT.................................................................................................................................................................................................................................................................2412.002000002
..AGCAGC-CGCGG-------------------------------------------------ACCGACCACGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002101000
...............................................................................................................................................................................................................AGCAACCCAGGAGT------------------CGCTCG--CTACCC....................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................T-TGCGGCACTCGCA-------------------------CC---------------A---CCAGCAAC.............................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................CCAGGAGT------------------CGCTCG--CTACC.....................................................................................................................................................................................................................................................................1911.001000001
..................................................................GACCACGAGAAGCAGAAAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............................................................................................................................................................................................................AGCAACCCAGGAGT------------------CGCTCG--C.........................................................................................................................................................................................................................................................................2111.001100000
.....AGC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................ACAACA------AC---A---------------ACCGCCGCCAAA..................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................AACTAGAACAGT-TGCGGCACTCGCA-------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..........GCGG-------------------------------------------------ACCGACCACGAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................CAACCCAGGAGT------------------CGCTCG--CT........................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................ACTAGAACAGT-TGCGGCACTCGCA-------------------------CC---------------A---.....................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.CAGCAGC-CGCGG-------------------------------------------------ACCGACCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................CTAGAACAGT-TGCGGCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......GC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................GAACAGT-TGCGGCACTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................AGAAAAACTAGAACAGT-TGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........GCGG-------------------------------------------------ACCGACCACGAGAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................AAACTAGAACAGT-TGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....CAGC-CGCGG-------------------------------------------------ACCGACCACGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................AAAGCAACCCAGGAGT------------------CGCC..............................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................ACCCAGGAGT------------------CGCTCG--CTACCC....................................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................ACA------AC---A---------------ACCGCCGCCAAAAGCAACCC..........................................................................................................................................................................................................................................................................................................2611.001010000
...GCAGC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................AACCCAGGAGT------------------CGCTCG--CTAC......................................................................................................................................................................................................................................................................2111.001000001
..........GCGG-------------------------------------------------ACCGACCACGAGAAGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................................................................................................................................................GCAACCCAGGAGT------------------CGCTCG--C.........................................................................................................................................................................................................................................................................2011.001010000
.......C-CGCGG-------------------------------------------------ACCGACCACGAGAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....AGC-CGCGG-------------------------------------------------ACCGACCACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................CCGCCAAAAGCAACCCAGGAGT------------------CG................................................................................................................................................................................................................................................................................2411.001000001
......GC-CGCGG-------------------------------------------------ACCGACCACGAGAAGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
........................................................................................................................................................................................................................GGAGT------------------CGCTCG--CTACCCGCT.................................................................................................................................................................................................................................................................2011.001000001
...................................................................................AAACTAGAACAGT-TGCGGCACTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..............................................................................................................................................................AGCAACAACA------AC---A---------------ACCGCCG.......................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................ACGAGAAGCAGAAAAACTAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........CGCGG-------------------------------------------------ACCGACCACGAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................AGAACAGT-TGCGGCACTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...........................................................................................................................................................................................................CAAAAGCAACCCAGGAGT------------------CGC...............................................................................................................................................................................................................................................................................2111.001000010
......................................................................................................CACTCGCA-------------------------CC---------------A---CCAGCAAC.............................................................................................................................................................................................................................................................................................................................................................1920.501001000
droBip1
GCAGCAGC-AGTTAAGCAG-----------------------------CAGCCGCG------GACCGACCACGAGAAGCAGTGAAAATAGAACAGT-TGCGGCACTCGCA-----------------CC-----ACC---------------A---GCAACAACAACA------AC---A---------------ACCGCCGCCAACAGCAACCCAGGAGT------------------CGCTCG--CTACCCGCTTCGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGAGCGCA-GC-AG----ACACCCCGAAGAACAGCAGGG----------------------------------------AAACGGA--CAATTTGT-TGCGGCACTCGCATCCACACAACA------AC-----ACC---------------A---GCAGCAGCAACA------ACAACA---------------GCC----------------------T------------------T--TTGCTTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA---------CCAACAACTGA---------------------------------------GAG-------------TG---------ASizeHit CountTotal NormTotal
No Reads
droFic1
CCCGAAGAA----------------------CAGCAGGGAAAAC---------------------------------------GGA--TATTTAGT-GGCGGCACTCGCAACCACACAACA------CC-----ACC---------------ACCAACAGCAACAACA------TC------------AGCAGCAGCC----------------------T------------------CGCTCG-CTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------ACTA---------------------------------------AAA-------------TA---------ASizeHit CountTotal NormTotal
No Reads
droEle1
ACAGCAAC-AAC--------------------------------------------------------------------------------------------------------------------------------------------A---GCAGCAGCAACA------ACAACA---------------ACC----------------------T------------------CGCTCA-TTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAA--C-AT-----------AA---------------------------------------CAT-------------CC---------ASizeHit CountTotal NormTotal
No Reads
droRho1
ACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------A---GCAGCAGCAACA------ACAACA---------------ACC----------------------T------------------CGCTCA-TTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAGCAG------------------------------GGCAGAC---------------------------------------GGA--TAACCAGTGTGCGGCACTCGCG-------------------------------------------------ACCACAACA------ACAGCA---------------GCC----------------------T------------------C-CTCGTTTTTCCCGCTTTTCCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAACAC---CCCGTAGCACAC---------------------------------------ACA-------------TA---------ASizeHit CountTotal NormTotal
No Reads
droTak1
AGGGCAGA-CGGA---------------------------------------------------------------------------TAGC----------------CAACCACACA-CACAGCCAACGGCCGACC---------------A---GCAGCAGCAACA------ACAACA---------------GCC----------------------T------------------C----GTTTTTCCCGCTTTTCGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------CAC---------------------------------------ACA-------------TA---------ASizeHit CountTotal NormTotal
No Reads
droEug1
CCGAAAAA-----------------------CAGCAGGGAAGAC---------------------------------------GGA--TAATTAGTGTGCGGCACTCACAACCACACA-CACA----A------ACC---------------T---CCAACAACAACA------TCAACA---------------GCC----------------------T------------------CGCTCGCTTTTCCCGCTTTTCGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA--CTCATA----------AT---------------------------------------CAG-------------TT---------ASizeHit CountTotal NormTotal
No Reads
dm3
CCGAATAC-----------------------CAGCCGGGCAGAC-----------------------------------------------------------ACGA-----------ACA------AC-----ACCAGCAGCAGCAGCACCACCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------AGCATTTCCCGCTTTTCGTTTTCGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------ASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
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............................................................................................................................................................................................................................................................CGCTTTTCGTTTTCGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTTTCGTTTTCGTCGTCGCCG.............................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGTTTTCGTC....................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GTTTTCGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AATAC-----------------------CAGCCGGGCAGAC-----------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGCACCACCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------..............................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTCGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------............2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ATCAACAGCA---GC---A---------------GC----------------------------------------------AGCATT........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................GGCAGAC-----------------------------------------------------------ACGA-----------ACA------AC-----ACC........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................CACCACCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------AG............................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CCCGCTTTTCGTTTTCGTCGTCGCC..............................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TCCCGCTTTTCGTTTTCGTCGTCGC...............................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CGGGCAGAC-----------------------------------------------------------ACGA-----------ACA------AC-----ACCA.......................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGAC-----------------------------------------------------------ACGA-----------ACA------AC-----ACCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................CCGCTTTTCGTTTTCGTCGTCGCC..............................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GCACCACCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------..............................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................GCTTTTCGTTTTCGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------A....................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................CAGAC-----------------------------------------------------------ACGA-----------ACA------AC-----ACCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................CACCACCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------..............................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................CGA-----------ACA------AC-----ACCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................C-----------------------------------------------------------ACGA-----------ACA------AC-----ACCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGCACCACCA---TCATCAACA.........................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCAGCAGCACCACCA---TCATC.............................................................................................................................................................................................................................................................................................................................................................2040.502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CAGCACCACCA---TCATCAA...........................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GCAGCACCACCA---TCATCAACA.........................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CACCACCA---TCATCAACAGA.......................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A---TCATCAACAGCA---GC---A---------------GC----------------------------------------------AGC...........................................................................................................................................................................................................................................................................2140.502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------............1820.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CGTCGTCGCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CA..........................1820.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCAGCAGCACCACCA---TCATCAA...........................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CCA---TCATCAACAGCA---GC---A---------------GC----------------------------------------------AG............................................................................................................................................................................................................................................................................2220.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................AGCAGCACCACCA---TCATC.............................................................................................................................................................................................................................................................................................................................................................1850.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACCAGCAGCAGCAGCACCACCA---..................................................................................................................................................................................................................................................................................................................................................................2240.251000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACCAGCAGCAGCAGCACCACC......................................................................................................................................................................................................................................................................................................................................................................2140.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................AGCAGCAGCACCACCA---TC................................................................................................................................................................................................................................................................................................................................................................1850.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ACA------AC-----ACCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................18130.152000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................A-----------ACA------AC-----ACCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................C-----ACCAGCAGCAGCAGCACCA........................................................................................................................................................................................................................................................................................................................................................................2070.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................CA------AC-----ACCAGCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................A------AC-----ACCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................A-----------ACA------AC-----ACCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................19120.081000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CATCAACAGCA---GC---A---------------GC----------------------------------------------AGCA..........................................................................................................................................................................................................................................................................20170.061000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................CATCAACAGCA---GC---A---------------GC----------------------------------------------AGC...........................................................................................................................................................................................................................................................................19180.061000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ATCAACAGCA---GC---A---------------GC----------------------------------------------AGC...........................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AGCAGCAGCAGCACCACCA---..................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CA------AC-----ACCAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................................................................................................ATCAACAGCA---GC---A---------------GC----------------------------------------------AGCA..........................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droSim2
GCAGCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACCAACAGCAGCAGCAGC----------------------------------------------------------------AGCATTTCCCGCTTTTCGCTTTCGTCGTCGCCGAACAACAA--------------ATAACAAAACCACGACAAACGAT---------------GGCCGATGCCGCGGAGAGTAAGCCACTGGCC----GCCGAAC------------------------------------------------------------------AG---------------------------------------CAG-------------CA---------GSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................................................................................................................................CCGCTTTTCGCTTTCGTCGTC.................................................................................................................................................................................................................................................2114.00400000000000004000
................................................................................................................................................................................................................................................................TTTCGCTTTCGTCGTCGCC..............................................................................................................................................................................................................................................1912.00210010000000000000
....................................................................................................................................................................................................................................................................GCTTTCGTCGTCGCCGAA...........................................................................................................................................................................................................................................1812.00220000000000000000
.........................................................................................................................................................................................................................................................TCCCGCTTTTCGCTTTCGTCGTC.................................................................................................................................................................................................................................................2312.00200000000000020000
............................................................................................................................................................................................................................................................CGCTTTTCGCTTTCGTCGTCGCC..............................................................................................................................................................................................................................................2312.00200200000000000000
..........................................................................................................................................................................................................................................................CCCGCTTTTCGCTTTCGTCGTCGCC..............................................................................................................................................................................................................................................2512.00200200000000000000
.........................................................................................................................................................................CAGCAGCAGC----------------------------------------------------------------AGCATTTCCCGC..................................................................................................................................................................................................................................................................2211.00100001000000000000
........................................................................................................................................................................GCAGCAGCAGC----------------------------------------------------------------AGCATTTCC.....................................................................................................................................................................................................................................................................2021.00200000200000000000
....................................................................................................................................................................................................................................................................................................................................................GATGCCGCGGAGAGTAAGCC.........................................................................................................................................................2011.00110000000000000000
..............................................................................................................................................................................GCAGC----------------------------------------------------------------AGCATTTCCCGCTTTTC.............................................................................................................................................................................................................................................................2211.00100000001000000000
.............................................................................................................................................................................................................................................................................GTCGCCGAACAACAA--------------ATAACAAAA..............................................................................................................................................................................................................2411.00100100000000000000
.............................................................................................................................................................................................................................................................GCTTTTCGCTTTCGTCGTCGC...............................................................................................................................................................................................................................................2111.00100000000000001000
................................................................................................................................................................................................................................................................TTTCGCTTTCGTCGTCGCCGAA...........................................................................................................................................................................................................................................2211.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................CGCGGAGAGTAAGCCACTGGCC----GCCGA.........................................................................................................................................2711.00100010000000000000
...................................................................................................................................................................................................................................................................CGCTTTCGTCGTCGCCGAA...........................................................................................................................................................................................................................................1911.00100001000000000000
............................................................................................................................................................................................................................................................CGCTTTTCGCTTTCGTCGTCG................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................TCCCGCTTTTCGCTTTCGTCGTCGCCG.............................................................................................................................................................................................................................................2711.00100100000000000000
.......................................................................................................................................................................................................................................................TTTCCCGCTTTTCGCTTTCGTCGTC.................................................................................................................................................................................................................................................2511.00100010000000000000
.................................................................................................................................................................................................................................................................................................................AACCACGACAAACGAT---------------GGCCGATGCCGC.....................................................................................................................................................................2811.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................GATGCCGCGGAGAGTAAGCCACT......................................................................................................................................................2311.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................TGCCGCGGAGAGTAAGCCACTGGC...................................................................................................................................................2411.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................ATGCCGCGGAGAGTAAGCCACTGGC...................................................................................................................................................2511.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................GTAAGCCACTGGCC----GCCGAAC------------------------------------------------------------------AG---------------------------------------CA..........................2511.00100000000000010000
............................................................................................................................................................................CAGCAGC----------------------------------------------------------------AGCATTTCCCGC..................................................................................................................................................................................................................................................................1911.00100001000000000000
........................................................................................................................................................................................................................................................................................................................ACAAACGAT---------------GGCCGATGCCGCGGA..................................................................................................................................................................2411.00100010000000000000
...................................................................................................................................................................................................................................................................CGCTTTCGTCGTCGCCGAACAACAA--------------A......................................................................................................................................................................................................................2611.00100010000000000000
.............................................................................................................................................................................................................................................................................GTCGCCGAACAACAA--------------ATAACAAAACCAC..........................................................................................................................................................................................................2811.00100010000000000000
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGCTTTCGTCGT..................................................................................................................................................................................................................................................2511.00100100000000000000
.............................................................................................................................................................................AGCAGC----------------------------------------------------------------AGCATTTCCCGC..................................................................................................................................................................................................................................................................1811.00100001000000000000
...............................................................................................................................................................................................................................................................................CGCCGAACAACAA--------------ATAACAAAACCAC..........................................................................................................................................................................................................2611.00100010000000000000
...................................................................................................................................................................................................................................................................CGCTTTCGTCGTCGCCGAAC..........................................................................................................................................................................................................................................2011.00100100000000000000
.........................................................................................................................................................CCA---TCACCAACAGCAGCA...................................................................................................................................................................................................................................................................................................................................................1821.00200002000000000000
.........................................................................................................................................................................................................................................................................CGTCGTCGCCGAACAA........................................................................................................................................................................................................................................1620.50100000001000000000
..AGCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TC................................................................................................................................................................................................................................................................................................................................................................1830.33100000000001000000
...GCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACC.............................................................................................................................................................................................................................................................................................................................................................2030.33100000000001000000
droSec2
GCAGCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACCAACAGCA---GC---A---------------GC----------------------------------------------AGCATTTCCCGCTTTTCGTTTTCGTCGTCGCCGAACAACAA--------------ATAACAAAACCACGACAAACGAT---------------GGCCGATGCCGCGGAGAGTAAGCCACTGGCC----GCCGAAC------------------------------------------------------------------AG---------------------------------------CAG-------------CA---------GSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGTTTTCGT.....................................................................................................................................................................................................................................................2211.0010100
.............................................................................................................................................................................................................................................................................................................................CGAT---------------GGCCGATGCCGCGGAG.................................................................................................................................................................2011.0010010
GCAGCAGC-AGCA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACCAACA.........................................................................................................................................................................................................................................................................................................................................................2711.0011000
.....................................................................................................................................................................................................................................................................................................................ACGACAAACGAT---------------GGCCGATGCCGCGGA..................................................................................................................................................................2711.0010010
...........CA--------------------------------------------------------------------------------------------------------------------------CC---------------ACCA---TCACCAACAGCA---GC---..............................................................................................................................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................CGCTTTTCGTTTTCGTCGTCGCC..............................................................................................................................................................................................................................................2311.0010010
droYak3
CAGACACG-A------------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCAGCAGCACCA------ACAACAACATCATCAGCAGC----------------AGCATCAGGCT------------------CGCTAGCATTTCCCGCTTTTCGTTCTCG---TCGCTGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------CSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................................................CA------ACAACAACATCATCAGCAGC----------------AGCAT..........................................................................................................................................................................................................................................................................................................27110.0010000000000010
............................................................................................................................................................................................................................................................CGCTTTTCGTTCTCG---TCGCT..............................................................................................................................................................................................................................................2019.00900000000009
..........................................................................................................................................................................................................................................................CCCGCTTTTCGTTCTCG---TCGCT..............................................................................................................................................................................................................................................2212.00200000000002
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGTTCTC.......................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................AGCAGC----------------AGCATCAGGCT------------------CGCT..............................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGTTCTCG---TC.................................................................................................................................................................................................................................................2311.00110000000000
...ACACG-A------------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCAGCA...............................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................GCATCAGGCT------------------CGCTAGCATTTCCC....................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGTTCT........................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................................................................AGGCT------------------CGCTAGCATTTCCC....................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................CCGCTTTTCGTTCTCG---TC.................................................................................................................................................................................................................................................1811.00110000000000
..............................................................................................................................................................................ACAACAACATCATCAGCAGC----------------AGCAT..........................................................................................................................................................................................................................................................................................................2511.00100000010000
...............................................................................................................................................................................CAACAACATCATCAGCAGC----------------A..............................................................................................................................................................................................................................................................................................................2020.50100000010000
................................................................................................................................................................................AACAACATCATCAGCAGC----------------AG.............................................................................................................................................................................................................................................................................................................2020.50101000000000
.......................................................................................................................................................................A------ACAACAACATCATCAGCAGC----------------A..............................................................................................................................................................................................................................................................................................................2220.50100000010000
.............................................................................................................................................................................................................................................................GCTTTTCGTTCTCG---TCGAC..............................................................................................................................................................................................................................................1940.25110000000000
droEre2
CGGGCAGA-CACAA--------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCACCAGCACCA------ACAACAACATCGTCCGCAGC----------------AGCATCAGGCT------------------CGCTAGCATTTCCCGCTTTTCGTTTTCG---TCGCAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------ASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................................................................................................................................................................CTTTTCGTTTTCG---TCGCAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................2214.0040000004
.....................................................................................................................................................................CCA------ACAACAACATCGTCCGCAGC----------------...............................................................................................................................................................................................................................................................................................................2312.0020200000
...............................................................................................................................................................................CAACAACATCGTCCGCAGC----------------AGCA...........................................................................................................................................................................................................................................................................................................2311.0010100000
.....................................................................................................................................................................................................................................................................TTTTCG---TCGCAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------CAA-------------AT---------.2211.0010000100
....................................................................................................................................................................................................................................................GCATTTCCCGCTTTTCGTTTTCG---T..................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................CGCTAGCATTTCCCGCTTTTCGTT..........................................................................................................................................................................................................................................................2411.0011000000
.....AGA-CACAA--------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCACCAGCACC..........................................................................................................................................................................................................................................................................................................................................................2811.0010000010
.....................................................................................................................................................................................................................ATCAGGCT------------------CGCTAGCATTTCCCG...................................................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................................................................AACATCGTCCGCAGC----------------AGCATCA........................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................AGCACCA------ACAACAACATCGTCCGCA.................................................................................................................................................................................................................................................................................................................................2511.0011000000
.....AGA-CACAA--------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCAC.................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..................................................................................................................................................................................................................AGCATCAGGCT------------------CGCTAGCAT.........................................................................................................................................................................................................................................................................2011.0010001000
.................................................................................................................................................................................ACAACATCGTCCGCAGC----------------AGC............................................................................................................................................................................................................................................................................................................2011.0010001000
..............................................................................................................................................................................ACAACAACATCGTCCGCAGC----------------AGC............................................................................................................................................................................................................................................................................................................2311.0010100000
....................................................................................................................................................................................ACATCGTCCGCAGC----------------AGCATC.........................................................................................................................................................................................................................................................................................................2011.0010000100
.............................................................................................................................................................................................................................................................GCTTTTCGTTTTCG---TCGCAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------A....................................................................2411.0011000000
..................................................................................................................................................................GCACCA------ACAACAACATCGTCCGCA.................................................................................................................................................................................................................................................................................................................................2411.0010100000
..................................................................................................................................................................GCACCA------ACAACAACATCGTCCGCAGC----------------AGC............................................................................................................................................................................................................................................................................................................2911.0011000000
......................................................................................................................................................................CA------ACAACAACATCGTCCGCAGC----------------AGC............................................................................................................................................................................................................................................................................................................2511.0010100000
............................................................................................................................................................................................CGCAGC----------------AGCATCAGGCT------------------C.................................................................................................................................................................................................................................................................................1811.0011000000
.................................................................................................................................................................AGCACCA------ACAACAACATCGTCC....................................................................................................................................................................................................................................................................................................................................2211.0011000000
....................................................................................................................................................................................................................................................GCATTTCCCGCTTTTCGTTTTCG---TC.................................................................................................................................................................................................................................................2511.0010100000
............AA--------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCACCAGCACC..........................................................................................................................................................................................................................................................................................................................................................2211.0010100000
......................................................................................................................................................................................................................................................ATTTCCCGCTTTTCGTTTTCG---TC.................................................................................................................................................................................................................................................2311.0011000000
................................................................................................................................................................................................GC----------------AGCATCAGGCT------------------CGCTAGCATTTCC.....................................................................................................................................................................................................................................................................2611.0011000000
.................................................................................................................................................................AGCACCA------ACAACAACATCGTCCGCAG................................................................................................................................................................................................................................................................................................................................2611.0011000000
...............................................................................................................................................................................CAACAACATCGTCCGCAGC----------------AGC............................................................................................................................................................................................................................................................................................................2211.0010100000
.............................................................................................................................................................................................................................................................GCTTTTCGTTTTCG---TCGCA..............................................................................................................................................................................................................................................1911.0010000100
................................................................................................................................................................................................................................................................TTTCGTTTTCG---TCGCAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------C...........................2311.0010100000
...................................................................................................................................................................................AACATCGTCCGCAGC----------------AGCATC.........................................................................................................................................................................................................................................................................................................2111.0010000010
......GA-CACAA--------------------------------------------------------------------------------------------------------ACA------AC-----ACC---------------A---GCACCAGC.............................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.........................................................................................................................................................................................GTCCGCAGC----------------AGCATCAGGCT------------------CGCTAGCA..........................................................................................................................................................................................................................................................................2811.0010000100
........................................................................................................................A------AC-----ACC---------------A---GCACCAGCACCA------AC.................................................................................................................................................................................................................................................................................................................................................2120.5011000000

Generated: 10/20/2015 at 07:10 PM