ID:

dps_706

 Coordinate:

2:22179651-22179710 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.1 -8.8 -8.8

Flybase annnotation

intron [Dpse\GA30193-in]; CDS [Dpse\GA30193-cds]; CDS [Dpse\GA30193-cds]

No Repeatable elements found

Sense Strand Reads

AATATCTCCTGTCCGATCCCAACCTGGATGCCATGGAGAAGACAGAGAAGGTGAGTGTTGATGCCAAATGAACCCGCAAATAAGAGTTCTAATTGTGGATATACTCGTAGATTGAGCAACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCTGGA

**************************************************.(((((((.....(((...((((............))))......)))..)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 M040

female body

 GSM343916

embryo

 SRR902012

CNS imaginal disc

 V112

male body		 SRR902011

testis

 SRR902010

ovaries

 GSM444067

head
..................................................GTGAGTGTTGATGCCAAATGAACC...................................................................................... 24 0 1 34.00 34 9 1 11 9 2 2 0 0
..........................................................................................AATTGTGGATATACTCGTAG.................................................. 20 0 1 8.00 8 1 1 0 0 1 3 2 0
..................................................GGGAGTGTTGATGCCAAATGAACC...................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................GTGAGTGTTGATGCCAAATGAACCC..................................................................................... 25 0 1 2.00 2 1 0 0 0 1 0 0 0
...........................................................................................ATTGTGGATATACTCGTAG.................................................. 19 0 1 2.00 2 0 1 1 0 0 0 0 0
..................................................GTGAGTGTTGATGCCAAATGAAC....................................................................................... 23 0 1 2.00 2 1 0 0 0 1 0 0 0
.........................................................................................TAATTGTGGATATACTCGTAGA................................................. 22 0 1 2.00 2 0 0 0 1 0 0 1 0
............................................GAGAAGGTGAGTGTTGATGC................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................TCGACGGCTGTCCCATAGC............... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................AAGGTGAGTGTTGATGGCA.............................................................................................. 19 1 1 1.00 1 0 0 0 0 1 0 0 0
..................CCAACCTGGATGCCATGGAGAAGA...................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................TGGATGCCATGGAAAAGACAGAG................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GTGAGTTTTGATGCCAAATGAACC...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GGGTGTGTTGATGCCAAATGAACC...................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GTGAGTGTTGATGCCAAATGAACCCGC................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GTGAGTGTTGATGCCAAATGA......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................ATTGAGCAACTGGATCTCGACGGCT......................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.................CCCAACCTGGATGCCATGGA........................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................GTCCCATAGCCGATTTGGGGCTGGA 25 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................TGTCCCATAGCCGATTTGG....... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GCGAGTGTTGATGCCAAATGAACC...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GTGAGTGTTGATGCCAAATG.......................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1
.........................................................................................TAATTGTGGATATACTCGTA................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................GGGAGTGTTGATGCCAAATGACC....................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................AAGATTGAGCAACTGGATCTCG............................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................GGATGCCATGGAGAAGACAGAG................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........GTCCGATCCCAACCTGGA.................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................CCCATAGCCGATTTGGGGCTGG. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GTCAGTGTTGATGCCAAATGAACC...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCT... 40 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................AAGGTGAGTGTTGATGGC............................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0
....................AACTTGGATGCCATGGAGAAGA...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................TCTAATTGTGGATATACTCGTAG.................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................AATTGTGGATATACTCGT.................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0
..................................................GTGAGTGTTGATGCCAAA............................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1
..........................................................................................AATTGTGGATATAATCGTAG.................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................TAATTGTGGATATACTCGTAGT................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................TTGATGCCAAATGAACCCGCA.................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GTGAGTGTTGATGCCAAATGAACCCG.................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................TAATTGTGGATATACTCGTAG.................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................AAGAGAACCCGCTAATAAGA........................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0
............................................................ATGCCCGATGAACCCGCATA................................................................................ 20 3 5 0.20 1 0 0 1 0 0 0 0 0
..........................GATGCCCTGGTGAAGACAGT.................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0
...........................ATGCCCTGGTGAAGACAGT.................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTATAGAGGACAGGCTAGGGTTGGACCTACGGTACCTCTTCTGTCTCTTCCACTCACAACTACGGTTTACTTGGGCGTTTATTCTCAAGATTAACACCTATATGAGCATCTAACTCGTTGACCTAGAGCTGCCGACAGGGTATCGGCTAAACCCCGACCT

**************************************************.(((((((.....(((...((((............))))......)))..)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 2:22179601-22179760 + dps_706 confident AATATCTCCTGTCCGATCCCAACCTGGATGCCATGGAGAAGACAGAGAAGGTGAGTG---TTGATGCCAAATGAACCCGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TAAG------AG-----TTC--------TA-----------------------A--------TTGTGGAT----------ATACTCGTAGATTGAGCAACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCTGGA
droPer2 scaffold_3:4960716-4960875 + dpe_2493 candidate AATATCTCCTGTCCGATCCCAACCTGGATGCCATGGAGAAGACAGAGAAGGTGAGTG---TTGATGCCAAATGAACCCGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TAAG------AG-----TTC--------TA-----------------------A--------TTTTGGAT----------ATACTCGTAGATTGAGCAACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCTCGA
droWil2 scf2_1100000004943:15077084-15077253 + AATATATTTTCGCTGATCCAAATATTGATGCCATGGAGAAGACCGAAAAGGTAAGAGACG--------A------C----A---------------------------------------------------------------TGTC---G-CCTTTA----------------------------------------------------------------------------------------------AAATCATTGCAA-------TATA----------------------------------------ATACAATAT------CACCT------------TTCTTTTGACTTTTAGATTGAGCAACTGGACTTAGATGGTTGTCCCATTGCCGATTTGGGCTTGGA
droVir3 scaffold_12855:8364538-8364707 - AGGATATCCAAACGGATGCCAATCTGGATGCCATGGAGAAAAAGGAAAAGGTAAACA---TCC----------------------------------------------------------------------------------GTC---AATTCTCTG-------------------------------------------------------------------------------------------G-AAACAATCGCAA-------TTAA----------------------------------------CTACAC-ATAT------ATTTTTTTT----------CGTCTTGTGCAGATGGAGCAGCTGGATTTGGATGGCTGCCCCATTGCCGACTTGGGCCTGGA
droMoj3 scaffold_6540:23582424-23582584 - AGGATATCCAAATGGATCCCAATCTAGATGCTATGGAGAAGAAGGAGAAGGTAAACT---TTAATGG-AACTCAATCAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------TAAG------CA-----ATT--------TA-----------------------TTAACAACT----------------CACTTTGGGCAGATGGAGCAATTGGATTTGGATGGCTGTCCCATTGCGGATTTGGGACTAGA
droGri2 scaffold_15074:4959332-4959493 - AGGATATACAGGCTGATCCCAATCAGGATGCCATGGAGAAGAAGGAAAAGGTCAGTCAA----------------ACAGCAAAG------------------------------------------------A-----------T----------TTCATTAATT-----------GAAAATTATCTATGC------------------------------------------------------------TA------------------------------------------------------------------------------------------TA------TTTCTGTATGCAGATGGAGCAACTGGATTTGGATGGCTGCGCCATCGCCGATTTAGGCCTGGA
droAna3 scaffold_13340:22833576-22833737 - AGTACATCCTGGCTGATCCAAACATTGATGCCATGGAGAAGACCGAAAAGGTAACAC----T------A------T----A--------------------------------------------------------------T---A---G-CTTTCCT-------------------------------------------------------------------------------------------TATA-----TGTAT--TTTTATACAAA------AA-----------------------------------------------------TGTATA------TTCCTCTTATTAGATTGAACAGTTGGACTTGGACGGCTGCCCTATTGCGGATCTGGGCCTTGA
droBip1 scf7180000396424:1108431-1108594 - AGTACATCCTGGCAGATCCAAACATTGACGCCATGGAGAAGACCGAAAAGGTAAGATAA----------------CCT---------------------------------------------------------------AAT---T---G-CCTCCCT----------------------------------------------------------------------------------------------GATTCATGTAT-------TTAA----------------------------------------CTATAA-TTAT----------------------TATTTAATTCCTTAGATTGAACAGTTGGACTTGGACGGCTGCCCTATTGCCGATCTGGGCCTTGA
droKik1 scf7180000302634:306069-306230 - AGTATATACTATCCGATCCCAACATTGATGCCATGGAAAAGACTGAAAAGGTGAGTG---CCA------------------------------------------------------------------------------AAATTTCAAAT-CTTTCG-------------------------------G------------------------------------------------------------CATA-----TC--TCCGACGACATAAA-----------------------------------------------------T---------CAT----------ATTTTCCCAGATTGAGCAACTTGATTTGGACAGCTGCCCCATTGCCGATCTGGGACTGGA
droFic1 scf7180000453903:220266-220432 - AATACATTCTCTCCGATCCAAACATCGACGCCATGGAGAAAACAGAGAAAGTAAGTTAA----------------TCA---------------------------------------------------------------AAA---T---T-CTTACAT----------------------------------------------------------------------------------------------TGT-----------------GAAA------AC-----GTTTGATTTGTCA-----------------------TTAACCATT----------------TCGTTTTTTCAGATTGAACAACTTGACCTGGATGGCTGCCCCATCGCAGACCTGGGCCTGGA
droEle1 scf7180000491104:2385502-2385557 - AGTACATTCTCTCCGATCCAAACATCGATGCTATGGAGAAGACGGAGAAGGTGAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777661:30991-31045 - AATACATTCTGTCTGATCCAAACATCGATGCTATGGAGAAGACAGAGAAGGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302411:344662-344740 - ATAATAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTGTTAAA----------CCATTTATAGATTGAACAGCTGGACTTGGATGGCTGCCCTATCTCAGACCTGGGCCTAGA
droTak1 scf7180000415261:515776-516001 + AGTACATTCTGACCGACCCAAACATTGATGCCATGGAAAAGACAGAAAAGGTGAGTAAG----------------TCATAACAG------------------------------------------------AAAATGTAAAGGTTTTAAAT-ATGTCG-------------------------------GTGTGATTATGAACAAAACGAGA----AATTTACTTCTTAAATGTCCA------------------------------------T-----------------------------TATAGC-----------------------ATTTAATAAACTCATTTCTTTGATTTTCTAGATTGAACAGCTGGACTTGGATGGCTGCCCCATCGCAGACTTGGGCCTGGA
droEug1 scf7180000409759:548067-548325 - AGTACATTTTGTCCGATCCAAACATCGATGCCATGGAGAAGACAGAAAAGGTGAGTAATGCTAT-------------------------------------------------------------------------------A---T---T-CTTAGTT-----TTAATTTGTAG--------------ATGT----CTGGACAAAATTAGATAGGATTCTTCCTTCCAAATGTATAATATCTTTATCGGCG--------A--TCCGTTGACATGATTCTAAGAAAACAT-------------TGTTGAACTGCTCTGTAA-TTAAT---T---------TA----------TAAATTTTCAGATTGAACAGCTGGACCTAGACGGCTGCCCAATTGCAGACCTAGGTCTAGA
dm3 chr3R:614248-614452 - AGTACATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTACGCTTTTACCAAGTAA-----CAAATTAAGTATTTTAAAATCATTTTTGTCCTTTTTTGATTAGTATTTTATACA-----------T----------TTCA-----------------TAAATGTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAGATTGAACAGCTAGACTTGGATGGCTGTCCCATTGCTGACCTAGGCTTGGA
droSim2 3r:548757-548961 - dsi_17146 AGTACATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTGGGCTTTAACCAAATAA-----CAAATTCAATATCTTGAACTAAGTTTAGTCCTTTTTTAATTAGTATTTTATACA-----------T----------TTCA-----------------TAAAATTACCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAGATTGAACAGCTAGACTTGGATGGCTGCCCAATTGCTGACCTAGGCTTGGA
droSec2 scaffold_6:714161-714365 - AGTACATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTGGGCTTTTACCAAATAA-----CAAATTCAATATCTTGAATTAAGTTTAGTCCTTTTTTAATTAGAATTTTATACA-----------T----------TTCA-----------------TAAAATTTCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAGATTGAACAGCTAGACTTGGATGGCTGCCCAATTGCTGACCTAGGCTTGGA
droYak3 3R:933342-933537 - AGTTCATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTACTTTTGTACCAAATAA-----AAAATACA----TTTAAGTTAATTTTAGTCCG------------------TAAA-----------T----------TGCG-----------------TAAATTTATATA----------------------------------------------TCTA------------------------------------T------------------------------------------------------------TT-----------TTATTTTTTTTTTAAGATTGAACAGCTAGACTTGGATGGCTGCCCAATCGCAGACCTAGGCTTGGA
droEre2 scaffold_4770:922206-922261 - AGTACATTCTAGCCGATCCAAACATCGATGCTATGGAAAAGACTGAAAAGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AATATCTCCTGTCCGATCCCAACCTGGATGCCATGGAGAAGACAGAGAAGGTGAGTG---TTGATGCCAAATGAACCCGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TAAG------AG-----TTC--------TA-----------------------A--------TTGTGGAT----------ATACTCGTAGATTGAGCAACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCTGGASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................GTGAGTG---TTGATGCCAAATGAACC.................................................................................................................................................................................................................................................................................................................................................24134.003401901102029
...............................................................................................................................................................................................................................................................................................................A-----------------------A--------TTGTGGAT----------ATACTCGTAG..................................................2018.0080110001230
..................................................GTGAGTG---TTGATGCCAAATGAACCC................................................................................................................................................................................................................................................................................................................................................2512.0020010001000
.......................................................................................................................................................................................................................................................................................................................................A--------TTGTGGAT----------ATACTCGTAG..................................................1912.0020100100000
..................................................GTGAGTG---TTGATGCCAAATGAAC..................................................................................................................................................................................................................................................................................................................................................2312.0020010001000
..............................................................................................................................................................................................................................................................................................................TA-----------------------A--------TTGTGGAT----------ATACTCGTAGA.................................................2212.0020000000101
............................................GAGAAGGTGAGTG---TTGATGC...........................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................TCGACGGCTGTCCCATAGC...............1911.0010100000000
..................CCAACCTGGATGCCATGGAGAAGA....................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
..................................................GTGAGTG---TTGATGCCAAATGAACCCGC..............................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..................................................GTGAGTG---TTGATGCCAAATGA....................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................ATTGAGCAACTGGATCTCGACGGCT.........................2511.0010000000001
.................CCCAACCTGGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATAGCCGATTTGGGGCTGGA2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGTCCCATAGCCGATTTGG.......1911.0010100000000
..................................................GTGAGTG---TTGATGCCAAATG.....................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
..............................................................................................................................................................................................................................................................................................................TA-----------------------A--------TTGTGGAT----------ATACTCGTA...................................................2011.0010000100000
.........................GGATGCCATGGAGAAGACAGAG...............................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........GTCCGATCCCAACCTGGA..................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CCCATAGCCGATTTGGGGCTGG.2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................AACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCT...4011.0010000000001
....................................................................................................................................................................................................................................................................................................TC--------TA-----------------------A--------TTGTGGAT----------ATACTCGTAG..................................................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................A-----------------------A--------TTGTGGAT----------ATACTCGT....................................................1811.0010000000100
..................................................GTGAGTG---TTGATGCCAAA.......................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
..............................................................................................................................................................................................................................................................................................................TA-----------------------A--------TTGTGGAT----------ATACTCGTAGT.................................................2211.0010000000001
............................................................TTGATGCCAAATGAACCCGCA.............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................GTGAGTG---TTGATGCCAAATGAACCCG...............................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................TA-----------------------A--------TTGTGGAT----------ATACTCGTAG..................................................2111.0010000000001
droPer2
AATATCTCCTGTCCGATCCCAACCTGGATGCCATGGAGAAGACAGAGAAGGTGAGTG---TTGATGCCAAATGAACCCGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TAAG------AG-----TTC--------TA-----------------------A--------TTTTGGAT----------ATACTCGTAGATTGAGCAACTGGATCTCGACGGCTGTCCCATAGCCGATTTGGGGCTCGASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................................................................................................................................................................................................................................................AACTGGATCTCGACGGCT.........................1814.004400000
....................................................................................................................................................................................................................................................................................................................................................................................ACTGGATCTCGACGGCTGT.......................1913.003300000
...................................................................................................................................................................................................................................................................................................................................................................................AACTGGATCTCGACGGCTGTCCCATAGCC..............2913.003300000
....................................................................................................................................................................................................................................................................................................................................................................................ACTGGATCTCGACGGCTGTCCC....................2212.002200000
..................................................GTGAGTG---TTGATGCCAAATGAACC.................................................................................................................................................................................................................................................................................................................................................2412.002000002
..................................................GTGAGTG---TTGATGCCAAATGAAC..................................................................................................................................................................................................................................................................................................................................................2312.002000002
..........................................................................................................................................................................................................................................................................................................................................................................................TCTCGACGGCTGTCCCATAGC...............2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................GCAACTGGATCTCGACGGCG.........................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................GAGCAACTGGATCTCGACGGCT.........................2211.001100000
...................CAACCTGGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................................................GTGAGTG---TTGATGCCAAATG.....................................................................................................................................................................................................................................................................................................................................................2011.001000001
droWil2
AATATATTTTCGCTGATCCAAATATTGATGCCATGGAGAAGACCGAAAAGGTAAGAGACG--------A------C----A---------------------------------------------------------------TGTC---G-CCTTTA----------------------------------------------------------------------------------------------AAATCATTGCAA-------TATA----------------------------------------ATACAATAT------CACCT------------TTCTTTTGACTTTTAGATTGAGCAACTGGACTTAGATGGTTGTCCCATTGCCGATTTGGGCTTGGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................ATATTGATGCCATGGAGAAGACCGA................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAGCAACTGGACTTAGATGGTT.........................2612.00200020
...................................................................................................................................................................................................................................................................................................................................................................................AACTGGACTTAGATGGTTG........................1911.00100010
.............................................................................................................................................................................................................................................................................................................................................................................TTGAGCAACTGGACTTAGATGGT..........................2311.00100100
................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGGACTTAGATG............................1811.00100010
.....................ATATTGATGCCATGGAGAA......................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................ATTGAGCAACTGGACTTAGATGGTT.........................2511.00100010
........................TTGATGCCATGGAGAAGACCGAAAAGA...........................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.......................ATTGATGCCATGGAGAAGAC...................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................CCAAATATTGATGCCATGGAGAA......................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................CTTAGATGGTTGTCCCATTGCC..............2211.00100010
.ATATATTTTCGCTGATCCAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................................................................................................................................................................................................AGATTGAGCAACTGGACC..................................1811.00110000
...................................................................................................................................................................................................................................................................................................................................................................................AACTGGACTTAGATGGTTGTC......................2111.00110000
..................CAAATATTGATGCCATGGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
....................AATATTGATGCCATGGAGAA......................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
...................AAATATTGATGCCATGGAGAAGAC...................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................AATATTGATGCCATGGAGAAGACC..................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................AACTGGACTTAGATGGTT.........................1811.00100010
..........................................................................................................................................................................................................................................................................................................................................................................AGATTGAGCAACTGGACT..................................1811.00100010
.......................ATTGATGCCATGGAGAAGACC..................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..................CAAATATTGATGCCATGAG.........................................................................................................................................................................................................................................................................................................................................................................................1960.17100010
droVir3
AGGATATCCAAACGGATGCCAATCTGGATGCCATGGAGAAAAAGGAAAAGGTAAACA---TCC----------------------------------------------------------------------------------GTC---AATTCTCTG-------------------------------------------------------------------------------------------G-AAACAATCGCAA-------TTAA----------------------------------------CTACAC-ATAT------ATTTTTTTT----------CGTCTTGTGCAGATGGAGCAGCTGGATTTGGATGGCTGCCCCATTGCCGACTTGGGCCTGGASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................................................................................................................................................................................................................................................................................................GGATGGCTGCCCCATTGCCGAC...........2214.0040000000000000000000000000000000000000000000000000000000000000040000000000000000
.....................ATCTGGATGCCATGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000010000000000002000000
.....ATCCAAACGGATGCCAATCTG....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
................TGCCAATCTGGATGCCATGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCCCCATTGCCGACTTGGGCCTG..2712.0020000000000000000000000000000000000000000000000000000000000000000000011000000000
............................................................TCC----------------------------------------------------------------------------------GTC---AATTCTCTG-------------------------------------------------------------------------------------------G-AAACA............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000002000000
..............................CCATGGAGAAAAAGGAAAA.............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
.................GCCAATCTGGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
......TCCAAACGGATGCCAATCTGGATGCCAT............................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AGATGGAGCAGCTGGATTT.................................1911.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
.......................CTGGATGCCATGGAGAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AGCTGGATTTGGATGGCTGC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................ATCTGGATGCCATGGAGAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
.................GCCAATCTGGATGCCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..GATATCCAAACGGATGCCAATCT.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
..............GATGCCAATCTGGATGCCATGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...............ATGCCAATCTGGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATGGAGCAGCTGGATTTGGATGGC..........................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCTGGATGCCATGGAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGATTTGGATGGC..........................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GGATTTGGATGGCTGCCCCATTGCC..............2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATGCCAATCTGGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GATGCCATGGAGAAAAAGGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AGCTGGATTTGGATGGCTGCCC.....................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................AATCTGGATGCCATGGAGAAAAA...................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTGGATGCCATGGAGAAAAA...................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................CTGGATGCCATGGAGAAAA....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000100000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTTTTTT----------CGTCTTGTGCAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTGGATGGCTG........................1811.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
...........ACGGATGCCAATCTGGATGCCATGGAGAA......................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCCGACTTGGGCCTGGA1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGGATTTGGATGGCTGCCCCATTGCC..............2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATGCCAATCTGGATGCCATGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000001000000000000000000000000000000000000000000000000000000000000000000
........CAAACGGATGCCAATCTGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAATCTGGATGCCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AGCTGGATTTGGATGGCT.........................1811.0010000000000100000000000000000000000000000000000000000000000000000000000000000000
.............GGATGCCAATCTGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGGATTTGGATGGCTGCC......................1911.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATGGAGCAGCTGGATTT.................................1811.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTTTTTT----------CGTCTTGTGG....................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000001000000
droMoj3
AGGATATCCAAATGGATCCCAATCTAGATGCTATGGAGAAGAAGGAGAAGGTAAACT---TTAATGG-AACTCAATCAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------TAAG------CA-----ATT--------TA-----------------------TTAACAACT----------------CACTTTGGGCAGATGGAGCAATTGGATTTGGATGGCTGTCCCATTGCGGATTTGGGACTAGASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTTGGATGGCTGTCCCATT.................2511.001000001
..............................................................................................................................................................................................................................................................................................................................................................................GGAGCAATTGGATTTGGATGGCC.........................2311.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATTGCGGATTTGGGA.....2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................GCAATTGGATTTGGATGGCT.........................2011.001100000
.........AAATGGATCCCAATCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................GGAGCAATTGGATTTGGATGGCT.........................2311.001000001
droGri2
AGGATATACAGGCTGATCCCAATCAGGATGCCATGGAGAAGAAGGAAAAGGTCAGTCAA----------------ACAGCAAAG------------------------------------------------A-----------T----------TTCATTAATT-----------GAAAATTATCTATGC------------------------------------------------------------TA------------------------------------------------------------------------------------------TA------TTTCTGTATGCAGATGGAGCAACTGGATTTGGATGGCTGCGCCATCGCCGATTTAGGCCTGGASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................CCAATCAGGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................1912.00220
droAna3
AGTACATCCTGGCTGATCCAAACATTGATGCCATGGAGAAGACCGAAAAGGTAACAC----T------A------T----A--------------------------------------------------------------T---A---G-CTTTCCT-------------------------------------------------------------------------------------------TATA-----TGTAT--TTTTATACAAA------AA-----------------------------------------------------TGTATA------TTCCTCTTATTAGATTGAACAGTTGGACTTGGACGGCTGCCCTATTGCGGATCTGGGCCTTGASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................................................................................................................................................................................................................................................GTTGGACTTGGACGGCTGCC......................2012.002010001
............................................................................................................................................................................................................................................................................................................................................................................ATTGAACAGTTGGACTTGGAC.............................2111.001010000
..................................................................................................................................................................................................................................................................................................................................................................................CAGTTGGACTTGGACGGCT.........................1911.001100000
...................AAACATTGATGCCATGGAGAAGACCG.................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..........................GATGCCATGGAGAAGACCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................GAACAGTTGGACTTGGACGGCTGCC......................2511.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCGGATCTGGGCCTTGA2211.001100000
.........................TGATGCCATGGAGAAGACCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGACTTGGACGGCTGCC......................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................AGTTGGACTTGGACGGCTGCC......................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................GTTGGACTTGGACGGCTGCCC.....................2111.001100000
droBip1
AGTACATCCTGGCAGATCCAAACATTGACGCCATGGAGAAGACCGAAAAGGTAAGATAA----------------CCT---------------------------------------------------------------AAT---T---G-CCTCCCT----------------------------------------------------------------------------------------------GATTCATGTAT-------TTAA----------------------------------------CTATAA-TTAT----------------------TATTTAATTCCTTAGATTGAACAGTTGGACTTGGACGGCTGCCCTATTGCCGATCTGGGCCTTGASizeHit CountTotal NormTotal
No Reads
droKik1
AGTATATACTATCCGATCCCAACATTGATGCCATGGAAAAGACTGAAAAGGTGAGTG---CCA------------------------------------------------------------------------------AAATTTCAAAT-CTTTCG-------------------------------G------------------------------------------------------------CATA-----TC--TCCGACGACATAAA-----------------------------------------------------T---------CAT----------ATTTTCCCAGATTGAGCAACTTGATTTGGACAGCTGCCCCATTGCCGATCTGGGACTGGASizeHit CountTotal NormTotal
No Reads
droFic1
AATACATTCTCTCCGATCCAAACATCGACGCCATGGAGAAAACAGAGAAAGTAAGTTAA----------------TCA---------------------------------------------------------------AAA---T---T-CTTACAT----------------------------------------------------------------------------------------------TGT-----------------GAAA------AC-----GTTTGATTTGTCA-----------------------TTAACCATT----------------TCGTTTTTTCAGATTGAACAACTTGACCTGGATGGCTGCCCCATCGCAGACCTGGGCCTGGASizeHit CountTotal NormTotal
No Reads
droEle1
AGTACATTCTCTCCGATCCAAACATCGATGCTATGGAGAAGACGGAGAAGGTGAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AATACATTCTGTCTGATCCAAACATCGATGCTATGGAGAAGACAGAGAAGGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAATAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTGTTAAA----------CCATTTATAGATTGAACAGCTGGACTTGGATGGCTGCCCTATCTCAGACCTGGGCCTAGASizeHit CountTotal NormTotal
No Reads
droTak1
AGTACATTCTGACCGACCCAAACATTGATGCCATGGAAAAGACAGAAAAGGTGAGTAAG----------------TCATAACAG------------------------------------------------AAAATGTAAAGGTTTTAAAT-ATGTCG-------------------------------GTGTGATTATGAACAAAACGAGA----AATTTACTTCTTAAATGTCCA------------------------------------T-----------------------------TATAGC-----------------------ATTTAATAAACTCATTTCTTTGATTTTCTAGATTGAACAGCTGGACTTGGATGGCTGCCCCATCGCAGACTTGGGCCTGGASizeHit CountTotal NormTotal
No Reads
droEug1
AGTACATTTTGTCCGATCCAAACATCGATGCCATGGAGAAGACAGAAAAGGTGAGTAATGCTAT-------------------------------------------------------------------------------A---T---T-CTTAGTT-----TTAATTTGTAG--------------ATGT----CTGGACAAAATTAGATAGGATTCTTCCTTCCAAATGTATAATATCTTTATCGGCG--------A--TCCGTTGACATGATTCTAAGAAAACAT-------------TGTTGAACTGCTCTGTAA-TTAAT---T---------TA----------TAAATTTTCAGATTGAACAGCTGGACCTAGACGGCTGCCCAATTGCAGACCTAGGTCTAGASizeHit CountTotal NormTotal
No Reads
dm3
AGTACATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTACGCTTTTACCAAGTAA-----CAAATTAAGTATTTTAAAATCATTTTTGTCCTTTTTTGATTAGTATTTTATACA-----------T----------TTCA-----------------TAAATGTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAGATTGAACAGCTAGACTTGGATGGCTGTCCCATTGCTGACCTAGGCTTGGASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................TCGATGCCATGGAAAAGACTGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
.....ATTCTATCCGATCCAAACATCGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2719.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGGATGGC..........................2518.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000020000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000001000
................TCCAAACATCGATGCCATGGAAAAGAC...................................................................................................................................................................................................................................................................................................................................................................................2716.006000000000000000000000000000000000000000000000010100000000000000000000000000021000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTAGACTTGGATGGCTGTCCC....................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTCC.....................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTCCCATT.................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGGATG............................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ACTTGGATGGCTGTCCCAT..................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................TGAACAGCTAGACTTGGATGGCTGT.......................2513.003000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATTGCTGACCTAGGCT....2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000
..........................GATGCCATGGAAAAGACTGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000
..............................CCATGGAAAAGACTGAAA..............................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGTCCCATTGCTGACCTAGGC.....2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................CATCGATGCCATGGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010
....................................................................................................................................A-----------T----------TTCA-----------------TAAATGTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAG..................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGACTTGGATGGCTGTCCC....................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000
................TCCAAACATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTC......................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCGATGCCATGGAAAAGACTGAAAAGA...........................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...ACATTCTATCCGATCCAAACATCGAT.................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTCCCA...................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACATTCTATCCGATCCAAACATC....................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCATGGAAAAGACTGAAAAGA...........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.................................TGGAAAAGACTGAAAAGA...........................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATTGAACAGCTAGACTTGGATGGC..........................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCCGATCCAAACATCGATGCCATGG..........................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAACATCGATGCCATGGAAAA......................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGAACAGCTAGACTTGGATGGCTGTCCCA...................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TAGACTTGGATGGCTGTCCCAT..................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCATTGCTGACCT.........1811.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATCCGATCCAAACATCGATGCCATGGAA........................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
........................TCGATGCCATGGAAAAGACTGAA...............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................TAGACTTGGATGGCTGTCCCATTGC...............2511.001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAACATCGATGCCATGGAA........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CCGATCCAAACATCGATGCCATG...........................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TCA-----------------TAAATGTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAG..................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACATCGATGCCATGGAAAA......................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGAACAGCTAGACTTGGATGGC..........................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGACTTGGATGGCTGTCCCAT..................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATCGATGCCATGGAAAAGACTGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGCTAGACTTGGATGGC..........................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCCATGGAAAAGACTGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
....................AACATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGGCTGTCCCATTGCTGACC..........2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........TCCGATCCAAACATCGATGCCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AAATGTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAG..................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGATGCCATGGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
AGTACATTCTATCCGATCCAAACATCG...................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................CAAACATCGATGCCATGG..........................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACATCGATGCCATGGAAAAGACTGAAA..............................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGTCCCATTGCTGACC..........2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGGATGGCATC.......................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGATGCCATGGAAAAGACTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACATCGATGCCATGGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTCCCATTGCTGACCTA........2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TAGACTTGGATGGCTGTC......................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCCCATTGCTGACCTAGG......2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATTGAACAGCTAGACTTGGATGGCT.........................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................CATCGATGCCATGGAAAAGAC...................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATCGATGCCATGGAAAAGACTGAAA..............................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACATCGATGCCATGGAAAAGAC...................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................TCGATGCCATGGAAAAGACTG.................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGG...............................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATTGAACAGCTAGACTTGGATGGCTGT.......................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GACTTGGATGGCTGTCCC....................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................TCGATGCCATGGAAAAGACTGAAA..............................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ACTTGGATGGCTGTCCCATT.................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCATTGCTGACCTAGGCTTG..2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGATGCCATGGAAAAGACTGAAA..............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTCCC....................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................CGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............ATCCAAACATCGATGCCATGGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAACATCGATGCCATGGAAAAGAC...................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACATCGATGCCATGGAAAAGACTGA................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGGATGGCTGTCCCATTGCTGAC...........2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGAACAGCTAGACTTGGATGGC..........................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACAGCTAGACTTGGATGGCT.........................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTACATTCTATCCGATCCAAACATC....................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGCTAGACTTGGATGGCT.........................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTACATTCTATCCGATCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGGATGGCTG........................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGATGCCATGGAAAAGACTGAAAAGA...........................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGATGCCATGGAAAAGACTGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATCGATGCCATGGAAAA......................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AACAGCTAGACTTGGAT.............................1711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATCCGATCCAAACATCGATGCCATGG..........................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAACATCGATGCCATGGAAAAGA....................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGGAT.............................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACAGCTAGACTTGGATGG...........................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTCCCATTGCT..............2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGTCATC...................2320.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGTACATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTGGGCTTTAACCAAATAA-----CAAATTCAATATCTTGAACTAAGTTTAGTCCTTTTTTAATTAGTATTTTATACA-----------T----------TTCA-----------------TAAAATTACCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAGATTGAACAGCTAGACTTGGATGGCTGCCCAATTGCTGACCTAGGCTTGGASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................TCGATGCCATGGAAAAGACTGAAA..............................................................................................................................................................................................................................................................................................................................................................................2412.00200000000110000000
.......................ATCGATGCCATGGAAAAGACTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
................................ATGGAAAAGACTGAA...............................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATTGAACAGCTAGACTTGGATGGC..........................2511.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGAACAGCTAGACTTGGATGGC..........................2211.00100000000100000000
.GTACATTCTATCCGATCCAAACA......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTAGACTTGGATGGCTGCCCA....................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTAGACTTGGATGGCTGCCC.....................2011.00101000000000000000
...................AAACATCGATGCCATGGAAAAGACTGA................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.......................ATCGATGCCATGGAAAAGACTGAAAA.............................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
droSec2
AGTACATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTGGGCTTTTACCAAATAA-----CAAATTCAATATCTTGAATTAAGTTTAGTCCTTTTTTAATTAGAATTTTATACA-----------T----------TTCA-----------------TAAAATTTCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCAGATTGAACAGCTAGACTTGGATGGCTGCCCAATTGCTGACCTAGGCTTGGASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGCCCAAT..................2411.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................CAATTGCTGACCTAGGCTTGGA2211.0010010
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGCCC.....................2111.0010010
droYak3
AGTTCATTCTATCCGATCCAAACATCGATGCCATGGAAAAGACTGAAAAGGTAAGTTACTTTTGTACCAAATAA-----AAAATACA----TTTAAGTTAATTTTAGTCCG------------------TAAA-----------T----------TGCG-----------------TAAATTTATATA----------------------------------------------TCTA------------------------------------T------------------------------------------------------------TT-----------TTATTTTTTTTTTAAGATTGAACAGCTAGACTTGGATGGCTGCCCAATCGCAGACCTAGGCTTGGASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................ATCGATGCCATGGAAAAGACTG.................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
...................AAACATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000
..................CAAACATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGACCTAGGCTTGGA2011.00101000000000
.GTTCATTCTATCCGATCCAAACAT.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGCCCA....................2211.00100000100000
.....................................................................................................................................................................................................................................................................................................................................................................................CTAGACTTGGATGGCTGCCC.....................2011.00100010000000
....................AACATCGATGCCATGGAAAAGA....................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................GCTAGACTTGGATGGCTGCC......................2011.00100010000000
.......................ATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................CCAAACATCGATGCCATGGAAAAGACT..................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGAACAGCTAGACTTGGAT.............................2011.00100000010000
droEre2
AGTACATTCTAGCCGATCCAAACATCGATGCTATGGAAAAGACTGAAAAGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............CCGATCCAAACATCGATGCTATGGAAAA......................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000

Generated: 10/20/2015 at 07:08 PM