ID:

dps_705

 Coordinate:

2:22175066-22175161 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.1 -14.1 -13.9

Flybase annnotation

exon [Dpse\GA30193:6]; CDS [Dpse\GA30193-cds]; CDS [Dpse\GA30193-cds]; exon [Dpse\GA30193:5]; intron [Dpse\GA30193-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------##################################################
CATCGACGTCCACATCCGCATCCACAGCGACAGCTACATCCTCAAGCAATGCCAACAACAATAATAATAACAACAACAATAACAATCCACCACGAAGCCAGTCGAAACGTCGTCCCTCGCTGGACGCAAGGATTGCCTGTCTGAAGGAGGAGCGCGGCCTGGCCGCCGAATTCATCAAGCACATATTCAACGTCCT
**************************************************................................((((((....((...((((.(((...........))))))).))...))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902012
CNS imaginal disc
 M059
embryo
 GSM343916
embryo
 GSM444067
head
 V112
male body
...............................................................................................................................AAGGATTGCCTGTCTGAAGGAGGAGCGC......................................... 28 0 1 4.00 4 0 4 0 0 0 0
.......................................................................................................GAAACGTCGTCCCTCGCTGGA........................................................................ 21 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................TCGAAACGTCGTCCCTCGCT........................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................CGAAACGTCGTCCCTCGCTG.......................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
............................GACAGCTACATCCTCAAGCA.................................................................................................................................................... 20 0 1 2.00 2 1 0 1 0 0 0
..................................................................................................................................GATTGCCCGTCTGGAGGAGAAG............................................ 22 3 2 1.00 2 1 0 0 0 1 0
..................................................................................................................................GATTGCCTGTCTGAAGGAGGAGCGCGGC...................................... 28 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................GTCGAAACGTCGTCCCTCGCTGGA........................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................CGAAACGTCGTCCCTCGCTGGA........................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............ATCCGCATCCACAGCGACAGC.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
............................GACAGCTACATCCTCAAGCAATGC................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................CTGAAGGAGGAGCGCGGCCTGGCCGCCGA........................... 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CAAGGATTGCCTGTCTGAAGGAGG.............................................. 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CGTCCCTCGCTGGACGCAAGGATTGC............................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................CCCTCGCTGGACGCAAGG................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................AACGTCGTCCCTCGCTGGA........................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................CGAAACGTCGTCCCTCGCTGGAC....................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CAAGGATTGCCTGTCTGAAGG................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................ATTGCCTGTCTGAAGGAGGAGC........................................... 22 0 1 1.00 1 0 0 0 1 0 0
.........................ATCGACAGCTACATCCTCAAGCAAT.................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................AAACGTCGTCCCTCGCTGGA........................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................GCCGAACTCATCAAGCCCATCT.......... 22 3 1 1.00 1 0 0 0 0 1 0
..............................................................................................................................................GAAGGAGGAGCGCGGCCTGGCCGC.............................. 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GAAACGTCGTCCCTCGCTGGAC....................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......GTCCACATCCGCATCCACAGCGAC..................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................AAGGATTGCCTGTCTGAAGGAGGA............................................. 24 0 1 1.00 1 0 1 0 0 0 0
CATCGACGTCCACATCCGCA................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
................CGCATCCACAGCGACAGC.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................AAGGATTGCCTGTCTGAAGGAGG.............................................. 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................AAGCCAGTCGAAACGTCGT................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1
.............................................................................AATAACAATCCACCACGAAGCCAGTC............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
......................................................................................CCACCACGAAGCCAGTCGAAA......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GTCCCTCGCTGGACGCAAGGA................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.....................CCACAGCGACAGCTACATCCT.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CAAGGATTGCCTGTCTGAAGGAGGAG............................................ 26 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................AGTCGAAACGTCGTCCCTCGCTGGAC....................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................AACAATCCACCACGAAGCCAGT.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................AAACGTCGTCCCTCGCTGG......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
......CGTCCACATCCGCATCCACAGC........................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TCCCTCGCTGGACGCAAGGATTGCC........................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............................GACAGCTACATCCTCAAGC..................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................AACTTCGTCCCTGGGTGGACG...................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................GATTGCCCGTCTGGAGGAGAA............................................. 21 3 5 0.40 2 1 0 1 0 0 0

Anti-sense strand reads

GTAGCTGCAGGTGTAGGCGTAGGTGTCGCTGTCGATGTAGGAGTTCGTTACGGTTGTTGTTATTATTATTGTTGTTGTTATTGTTAGGTGGTGCTTCGGTCAGCTTTGCAGCAGGGAGCGACCTGCGTTCCTAACGGACAGACTTCCTCCTCGCGCCGGACCGGCGGCTTAAGTAGTTCGTGTATAAGTTGCAGGA
**************************************************................................((((((....((...((((.(((...........))))))).))...))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
.............................................................AGTTTTATTGTTGTTGTTATTGTTAC............................................................................................................. 26 3 7 0.14 1 1
..............................GTCGATGTAGTAGTCCGT.................................................................................................................................................... 18 2 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:22175016-22175211 + dps_705 CATCGACGTCCACA--------------------------------------------------------TCCGCATCCACAGCGACAGCTACATCCTCAAGCAATGCCAACAACAATAATAATAACAACAACAATAACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------TCG--------------------------------------------AAACGTCGTCCCTCGCTGGA----CGCAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCCGCCG---AATTCATCAAGCACATATTCAACGTCCT
droPer2 scaffold_3:4956127-4956322 + CATCGACGTCCACA--------------------------------------------------------TCCGCATCCACAGCGACAGCTACATCCTCAAGCAATGCCAACAACAATAATAATAACAACAACAATAACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------TCG--------------------------------------------AAACGTCGTCCCTCGCTGGA----CGCAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCCGCCG---AATTCATCAAGCACATATTCAACGTCCT
droWil2 scf2_1100000004943:15072503-15072677 + CCGCA-----------------------------------------------------------------------------------------------------------------------AACAATAATAATAATAATCCAACGGGAACCACTAACACTACCACCTCTA-CCCCATCA---------------TCGGCA------ACGG-----------------CAACTT-TA-----------------TCC--------------------------------------------AAGCGTCGTCCTTCATTAGA----TGCTCGCATTGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCTG---ATTTCATCAAGCATATTTTCAACGTCTT
droVir3 scaffold_12855:8369293-8369455 - CCACATCCTCAGCA--------------------------------------------------------GCAGCA---------GCTACTCCCACC------------------------AACAACAATAACAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCGGTA--------------------------------------------AAGCGACGTCCCTCGTTGGA----CGCCCGGATCGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGTCTGGCTGCCG---ATTTCATCAAGCACATCTTTAACGTGCT
droMoj3 scaffold_6540:23587164-23587307 - TGCTAACAACAACA---------------------------------------------------------------------------------------------------------------ACAACAATACGA--------GCAGCAAC---------------------------------------------TCCTC----------------------------------------GTCGCATCTG---GCG--------------------------------------------AAGCGTCGCCCCTCGCTGGA----TGCTCGCATCGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCTGCCG---ACTTCATCAAGCACATCTTCAACGTGCT
droGri2 scaffold_15074:4964056-4964211 - CAATAATAACAACA---------------------------------------------------------------------------------------------------------------ACAACAACAATAACAACAGCAGCAGCAG---------------------------------------CAACAACAGCGC--------------------------AAATCAG-------------------GTG--------------------------------------------AAGCGTCGTCCATCGCTGGA----TGCGCGCATCGC---------TTGCTTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCCG---ATTTCATCAAGCACATCTTCAATGTACT
droAna3 scaffold_13047:843733-843899 + CAGCAGCATCAGCA--------------------------------------------------------GCAGCATCAGCAGCAGCAC-------C---------------------------AGCAACAGCAACAGCAGTT------------------------GCAC---------CA---------------GCAGCA------ACAGCAACTCCAGCATCTGCAGAACCAG-------------------CCC--------------------------------------------CCGCCTCTGCCCCCGCTGAA----CGCCAACATGAAGAGCCTGAAGTACCTGGAG------CACCT-------------------------------------------------------------------------------------------------------------GCGCTC-------------------------------CAGCTACCG
droBip1 scf7180000396385:156640-156844 - CAGCAGCCAAAGCA--------------------------------------------------------ACAGCAATA---------------CGTCAAAGCAACATCAGCAACAGTAACAATAACAATTGCAACAACAATTACAAAAGCAA---------------------------------------------CAGTAACAGCAACAGA------A------------ACAG-------------------CTA--------------------------------------------CAAT-----CTAGCCCCA----------CGGGCTAG---------CTTCCCGGAGATCATGCAGCCACGCCTCTCGCTCAACGGGCTCCTCAACC------------------------------------------------------------------------------------CCTCGCTGATG---CCCT-----------CGCCCCGCCCCCT
droKik1 scf7180000302634:310496-310715 - AAT----------------------------------------------------------------------------------------------------------------AACAACAACAACAATAACAATAACAATCCACCAAGCAG---------------------------------------------CACCAGC---------AGTGG-----------CAGCCAA-------------------GCC--------------------------------------------AAGCGTCGGCCTTCCCTAGA----TGCCAGGATTGC---------CTGCCTTAAG------G-------------------TAAGTCCCTTAAATCCTATTTAATTCGCTTTA-------------AACAAATATATAATTTTGAT-------TTCTT-TTTA-AAGGAGGAAC-GCGGCCTGGCAGCGG---ATTTCATCAAGCACATATTCAATGTGCT
droFic1 scf7180000453903:224976-225193 - CAACAACAA---------------------------------------------------------------------------------------------------------------TAACAACAACAACAACAACAATCCGCCAGGGAA---------------------------------------------CAGCGG--------------------------CAGTCAG-------------------GTG--------------------------------------------AAGCGCCGCCCCTCCCTGGA----CGCCAGAATCGC---------GTGCCTCAAG------G-------------------TAAGA------------AATTGGATGATCTTTATTCCTGACCCTCATGACTTATGCATCC------TCCGTTTTATTCCTTT-CAGGAGGAGC-GCGGCCTGGCAGCTG---ACTTCATCAAGCACATCTTCAATGTGCT
droEle1 scf7180000491087:122748-122937 + TACCATCCCCACCAGCTGC---ACGCCCACA--------CCCTGCCCCACCAGCA---------------GCAGCAACAGCAGCAACAG-------------------------------------CAACAGCAG------------------------------------------CAGCAGCAGCAGCAACA---ACAGCAGCAGCAACAGC------A------------ACAGCTGCACGGCGATCCCGACGACG------------------------------------------------------------AGGA----GGTGGAGAATGC---------CCGCCTGGAG------CAGGTGCGTCGC--------------------------------------------------------------------------------------------------------AAGCAGAACGCCC---AG----------------------CTCA
droRho1 scf7180000778058:6353-6491 - CAGCAACTACAGCA--------------------------------------------------------GCAGCAGCAACAACAGCAGCATACCC---AGCCGG-------------------ATCCGCTGCAGCAACTAACCAACTACACG------------------------------CAGCAGCAGTT------------------------GCC------GCAGAGCTAC-------------------CCA--------------------------------------------CAACACCGTCCCCAGCCATA----TCAGCAGAATGT---------CTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC
droBia1 scf7180000302411:350391-350519 - GAGGTGCATCCACG--------------------------------------------------------TCCGCTGCTGCTGCGGCAGCAGCCTCC---------------------------AATAACAATAATAATAATCCACCAGGAAG---------------------------------------------CAGTGG--------------------------AAACCAG-------------------GTG--------------------------------------------AAGCGCCGCCCATCACTGGA----TGCAAGAATCGC---------ATGCCTCAAG------G---------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415352:154263-154404 - CATCACGCCCAGCAGCAACATCATGGCCATA--------CG---------CTGCACCCGCATCATACACACC----------------------------------------------------AGCAACAACAGCAGCAACACCACCAGCAG------------------------CACCAACAGCAACAGCA---ACAGCAGCACCACCAGC------A------------GCAG-------------------------------------------------------------------------------------------CAACATGCCGC---------CCAGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG
droEug1 scf7180000409759:552578-552825 - GGGGAGCTTCCACG--------------------------------------------------------TCCGCTGCCGCTGCGGCAGCTTCGTCC---------------------AATAACAATAACAACAATAATAATCCACCAGGAAG---------------------------------------------CAGTGG--------------------------TAATCAA-------------------GTG--------------------------------------------AAGCGCCGCCCATCGCTGGA----CGCCAGGATTGC---------ATGCCTCAAG------G-------------------TTAGT------------ACTTAATTCATTTTAATAAGAAATGTTAA-----------ATAGTAATGTTCGTTTTACGCTTTCCTAGGAGGAAC-GTGGACTGGCTGCAG---ACTTTATCAAGCACATCTTCAACGTGCT
dm3 chr2R:11375801-11375916 - TATCAACAGCAGCA--------------------------------------------------------TCAGCATCAACATCACCAGGC-------------------------------------------------------ACCGCAG------------------------CAACATCAGCAACAGGC---ACCGCAGCAGCAACAGTATCAGAAACCTCCGCATAAGCAA-------------------GTC------------------------------------------C-AGGTGCCATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droSim2 3r:553497-553640 - GAGGAGCGTCCACG--------------------------------------------------------TCCGCTGCAGCCGCGGCAGCGTCCTCC------------------AACAACAATAACAACAATAATAATAATCCACCAGGCAA---------------------------------------------CAGTGTC---------AACCT-----------CAATCAA-------------------GTA--------------------------------------------AAGCGCCGTCCATCTCTGGA----TGCTAGAATCGC---------ATGCCTTAAG------G---------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_6:718824-718967 - GAGGAGCGTCCACG--------------------------------------------------------TCCGCTGCAGCCGCGGCAGCGTCCTCC------------------AACAACAATAACAACAATAATAATAATCCACCAGGCAA---------------------------------------------CAGTGTC---------AACCT-----------CAATCAA-------------------GTA--------------------------------------------AAGCGCCGTCCATCTCTGGA----TGCTAGAATCGC---------ATGCCTTAAG------G---------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:4903178-4903406 + CAGCAGCAGCCACAACAACAGCAGCAGCTTA--------AA---------CAGCA------------------------------------GCAGC----------------------------AACAAGAACGACAGCAACA------------------------GCAC------TAACAGCAACAACAACA------------------------GCCGCTGCGACAACAGCAA-------------------CATCGACGACGACGGCGACGGCAACGGCGACTGCGACGT-----------CAACGC-CTCTGCCGGCGAACCGC---TATGGC---------CGGAGTAAAG------A----------------------------------------------------------------------------------------------------------AAAAGCCGCGGACGAGCGGCCA---CATTT--TCAGTTCAGTTCCAACGCTCC
droEre2 scaffold_4690:17013472-17013694 + CAACAACGACCACAACGAA---GCGGCGG-AATGCTGAGTCCTCTGC------------------------CAGCAACAACAATAACAACAATACC----------------------------AGCACCACCAACAACAACA------------------------ATACCAGCAATAACAACAACAACAACA---ACAACAGCACCACG---------A------------ACAA-------------------CAA---------------------------CAATAATAATAATGTTAAAACAAAGCCC------------------------------------------------------------------------------GTGGACA------------------------------------------------------------------------CGAGTC-CCTACTTGACCCCCGAGAATCTCATCGAGCGCACCGTCGACGTCCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CATCGACGTCCACA--------------------------------------------------------TCCGCATCCACAGCGACAGCTACATCCTCAAGCAATGCCAACAACAATAATAATAACAACAACAATAACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------TCG--------------------------------------------AAACGTCGTCCCTCGCTGGA----CGCAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCCGCCG---AATTCATCAAGCACATATTCAACGTCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................AAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GC............................................2814.0040000000004
..................................................................................................................................................................................................................................................................G--------------------------------------------AAACGTCGTCCCTCGCTGGA----.....................................................................................................................................................................................................2112.0020100000001
................................................................................................................................................................................................................................................................TCG--------------------------------------------AAACGTCGTCCCTCGCT............................................................................................................................................................................................................2012.0020200000000
.................................................................................................................................................................................................................................................................CG--------------------------------------------AAACGTCGTCCCTCGCTG...........................................................................................................................................................................................................2012.0020200000000
....................................................................................GACAGCTACATCCTCAAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020110000000
.............................................................................................................................................................................................................................................................................................................................................GATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGC.........................................2811.0010000000001
............................................................................................................................................................................................................................................G-------------------TCG--------------------------------------------AAACGTCGTCCCTCGCTGGA----.....................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................CG--------------------------------------------AAACGTCGTCCCTCGCTGGA----.....................................................................................................................................................................................................2211.0010100000000
.............A--------------------------------------------------------TCCGCATCCACAGCGACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
....................................................................................GACAGCTACATCCTCAAGCAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................CTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCCGCCG---A...........................2911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................CAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGG..................................................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................CGTCCCTCGCTGGA----CGCAAGGATTGC---------................................................................................................................................................................................2611.0010100000000
........................................................................................................................................................................................................................................................................................................................CCCTCGCTGGA----CGCAAGG..............................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................AACGTCGTCCCTCGCTGGA----.....................................................................................................................................................................................................1911.0010010000000
.................................................................................................................................................................................................................................................................CG--------------------------------------------AAACGTCGTCCCTCGCTGGA----C....................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................CAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------.....................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................ATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-..............................................2211.0010000100000
...............................................................................................................................................................................................................................................................................................................AAACGTCGTCCCTCGCTGGA----.....................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................GAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCCGC.................................2411.0010100000000
..................................................................................................................................................................................................................................................................G--------------------------------------------AAACGTCGTCCCTCGCTGGA----C....................................................................................................................................................................................................2211.0010100000000
.......GTCCACA--------------------------------------------------------TCCGCATCCACAGCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
..........................................................................................................................................................................................................................................................................................................................................AAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGA.................................................2411.0010000000001
CATCGACGTCCACA--------------------------------------------------------TCCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
........................................................................CGCATCCACAGCGACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................AAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGG..................................................2311.0010100000000
......................................................................................................................................................................................................................................AAGCCAG-------------------TCG--------------------------------------------AAACGTCGT....................................................................................................................................................................................................................1911.0010000001000
.....................................................................................................................................AATAACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------TC..........................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................CCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------TCG--------------------------------------------AAA..........................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................GTCCCTCGCTGGA----CGCAAGGA.............................................................................................................................................................................................2111.0010100000000
.............................................................................CCACAGCGACAGCTACATCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................CAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAG................................................2611.0010000000001
...........................................................................................................................................................................................................................................AG-------------------TCG--------------------------------------------AAACGTCGTCCCTCGCTGGA----C....................................................................................................................................................................................................2611.0010100000000
........................................................................................................................................AACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------T...........................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................................AAACGTCGTCCCTCGCTGG..........................................................................................................................................................................................................1911.0010100000000
......CGTCCACA--------------------------------------------------------TCCGCATCCACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................TCCCTCGCTGGA----CGCAAGGATTGC---------C...............................................................................................................................................................................2511.0010100000000
....................................................................................GACAGCTACATCCTCAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
CATCGACGTCCACA--------------------------------------------------------TCCGCATCCACAGCGACAGCTACATCCTCAAGCAATGCCAACAACAATAATAATAACAACAACAATAACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------TCG--------------------------------------------AAACGTCGTCCCTCGCTGGA----CGCAAGGATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCCGCCG---AATTCATCAAGCACATATTCAACGTCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................G--------------------------------------------AAACGTCGTCCCTCGCT............................................................................................................................................................................................................1814.004400000
..................................................................................................................................................................................................................................................................G--------------------------------------------AAACGTCGTCCCTCGCTGGA----.....................................................................................................................................................................................................2112.002200000
...............................................................................................................................................................................................................................................................................................................................................TTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCG...........................................2411.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATCAAGCACATATTCAACGTC..2511.001010000
..........CACA--------------------------------------------------------TCCGCATCCACAGCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
......................................................................................................................................ATAACAATCCACCACG--------------------------------------------------------------------------------AAGCCAG-------------------T...........................................................................................................................................................................................................................................................................2411.001000001
.............................................................................................................................................................................................................................................................................................................................................GATTGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------A....................................................1811.001010000
droWil2
CCGCA-----------------------------------------------------------------------------------------------------------------------AACAATAATAATAATAATCCAACGGGAACCACTAACACTACCACCTCTA-CCCCATCA---------------TCGGCA------ACGG-----------------CAACTT-TA-----------------TCC--------------------------------------------AAGCGTCGTCCTTCATTAGA----TGCTCGCATTGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCTG---ATTTCATCAAGCATATTTTCAACGTCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................CTA-CCCCATCA---------------TCGGCA------ACGG-----------------C.....................................................................................................................................................................................................................................................................................................2214.00400130
..................................................................................................................................................................................................................................................................................................................................................................GAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCT................................2513.00301200
............................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCT................................2112.00200200
.........................................................................................................................................................................................................................................................................................................................................CTCGCATTGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGA.................................................2512.00202000
.......................................................................................................................................................................................................................................AACTT-TA-----------------TCC--------------------------------------------AAGCGTCGTCCTTCA..............................................................................................................................................................................................................2511.00100100
............................................................................................................................................................................................................................................................................................................................CATTAGA----TGCTCGCATTGC---------................................................................................................................................................................................1911.00100010
........................................................................................................................................AATAATCCAACGGGAACCACT...............................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................................A-----------------TCC--------------------------------------------AAGCGTCGTCCTTCA..............................................................................................................................................................................................................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAAGCATATTTTCAACGTCTT2411.00100100
.......................................................................................................................................................................................................................................................................................................................................TGCTCGCATTGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGG..................................................2611.00100010
.............................................................................................................................................................................................................................................................................................................................ATTAGA----TGCTCGCATTGC---------CTGC............................................................................................................................................................................2211.00101000
..............................................................................................................................................................................................................................................................................................................................................ATTGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGA.................................................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................GC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-..............................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGC-GCGGCTTGGCTGCT................................1811.00101000
...............................................................................................................................................................................................................................................................................................................................................................CCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTG..................................2611.00100010
.................................................................................................................................................................................................................................................................CC--------------------------------------------AAGCGTCGTCCTTCATTAGA----TG...................................................................................................................................................................................................2411.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCATATTTTCAACGTCTT2111.00100100
..........................................................................................................................................................................CTA-CCCCATCA---------------TCGGCA------ACGG-----------------......................................................................................................................................................................................................................................................................................................2111.00100100
.......................................................................................................................................................................................................................................AACTT-TA-----------------TCC--------------------------------------------AAGCGTCGTCC..................................................................................................................................................................................................................2111.00100100
...........................................................................................................................................................................................................................................................................................................................................CGCATTGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------A....................................................2011.00100010
............................................................................................................................................................................................................................................................................................................................CATTAGA----TGCTCGCATTGC---------CTGCC...........................................................................................................................................................................2411.00101000
.............................................................................................................................................................................................................................................TA-----------------TCC--------------------------------------------AAGCGTCGTCCTT................................................................................................................................................................................................................1811.00100010
..............................................................................................................................................................................................................................................................................................................................TTAGA----TGCTCGCATTGC---------CTGCCT..........................................................................................................................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGC-GCGGCTTGGCTGCTG---ATT.........................2311.00101000
..........................................................................................................................................................................CTA-CCCCATCA---------------TCGGCA------ACGG-----------------CAACTT-T..............................................................................................................................................................................................................................................................................................2811.00110000
..............................................................................................................................................................................CCCCATCA---------------TCGGCA------ACGG-----------------C.....................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................................................................................................................................................................................................................CTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCT................................2711.00100010
...........................................................................................................................................................CTAACACTACCACCTCTA-CCCC..........................................................................................................................................................................................................................................................................................................................................................2211.00101000
droVir3
CCACATCCTCAGCA--------------------------------------------------------GCAGCA---------GCTACTCCCACC------------------------AACAACAATAACAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCGGTA--------------------------------------------AAGCGACGTCCCTCGTTGGA----CGCCCGGATCGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGTCTGGCTGCCG---ATTTCATCAAGCACATCTTTAACGTGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...CATCCTCAGCA--------------------------------------------------------GCAGCA---------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1993.1128000000100000000000001004436000000033120000000000000000000000000
........................................................................................................................................AATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGC.............................................................................................................................................................................................................................................................................2012.002000000000000010000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................GTA--------------------------------------------AAGCGACGTCCCTCGTTGGA----.....................................................................................................................................................................................................2312.002000000000000000000000010000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................A--------------------------------------------AAGCGACGTCCCTCGTTGGA----.....................................................................................................................................................................................................2112.002000100000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AGCGACGTCCCTCGTTGGA----CGCCC................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................ATAACAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATC.................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
......................................................................GCAGCA---------GCTACTCCCACC------------------------AAC................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGTCTGGCTGC.................................2011.001000000000100000000000000000000000000000000000000000000000000000
CCACATCCTCAGCA--------------------------------------------------------GCAGCA---------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATCTGGCGGTA--------------------------------------------AAGCGACGT....................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................GTA--------------------------------------------AAGCGACGTCCCTCGTTGGA----CGCC.................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.CACATCCTCAGCA--------------------------------------------------------GCAGCA---------GCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGTCTGGC....................................2711.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGCGACGTCCCTCGTTGGA----.....................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCGGTA--------------------------------------------AAG..........................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGCCCGGATCGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AG...................................................2511.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCG...........................................2311.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................ATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCG............................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................AACAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCG............................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCCCGGATCGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGT.........................................3311.001000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................ATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGC.............................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................................................GCAGCA---------GCTACTCCCACC------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................C---------------------------------------------------------------------------------------------------GTCGCATCTGGCGGTA--------------------------------------------AAGCGACGTCCC.................................................................................................................................................................................................................2911.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................CTGGCGGTA--------------------------------------------AAGCGACGTCCCTC...............................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................CCCTCGTTGGA----CGCCCGGATCGC---------CTGC............................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTGCCG---ATTTCATCAA..................2011.001000000000000010000000000000000000000000000000000000000000000000
...CATCCTCAGCA--------------------------------------------------------GCAGCA---------GCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................CAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCG............................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................AATAACAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGCGGT..........................................................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................ATCGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCG...........................................2511.001000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................AACAATAATAACTC---------------------------------------------------------------------------------------------------GTCGCATCTGGC.............................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TGGCGGTA--------------------------------------------AAGCGACGTCC..................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................GCAGCA---------GCTACTCCCACC------------------------AACAACAA...........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGTCTGGCTGCC................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGCCCGGATCGC---------CTGCCTGAAG------................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GGATCGC---------CTGCCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-..............................................2411.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................ACTCCCACC------------------------AACAACAATAACAAT....................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-GCGGTCTGGCTGCCG---AT..........................2011.001000000000000000000000000000000000000100000000000000000000000000
...CATCCTCAGCA--------------------------------------------------------GCAGCA---------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.707000000000000000000000002201000000000002000000000000000000000000
....ATCCTCAGCA--------------------------------------------------------GCAGCA---------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.091000000000000000000000000001000000000000000000000000000000000000
...CATCCTCAGCA--------------------------------------------------------GCAGCA---------GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071000000000000100000000000000000000000000000000000000000000000000
droMoj3
TGCTAACAACAACA---------------------------------------------------------------------------------------------------------------ACAACAATACGA--------GCAGCAAC---------------------------------------------TCCTC----------------------------------------GTCGCATCTG---GCG--------------------------------------------AAGCGTCGCCCCTCGCTGGA----TGCTCGCATCGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCTGCCG---ACTTCATCAAGCACATCTTCAACGTGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................GA--------GCAGCAAC---------------------------------------------TCCTC----------------------------------------GTCGC....................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................ATCTG---GCG--------------------------------------------AAGCGTCGCCCC.................................................................................................................................................................................................................2011.001000010
............CA---------------------------------------------------------------------------------------------------------------ACAACAATACGA--------GCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................2021.002000011
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGC-GCGGCCTGGCTGCC................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................GCATCGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-..............................................2411.001000001
.........................................................................................................................................................................................................TC----------------------------------------GTCGCATCTG---GCG--------------------------------------------AAGC.........................................................................................................................................................................................................................1911.001100000
........................................................................................................................................................C---------------------------------------------TCCTC----------------------------------------GTCGCATCTG---GCG--------------------------------------------AAG..........................................................................................................................................................................................................................2211.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACTTCATCAAGCACATCTTCAAC.....2411.001100000
...........................................................................................................................................................................................................................................................................................................................................CGCATCGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGG..................................................2211.001100000
..................................................................................................................................................................................................................................................................G--------------------------------------------AAGCGTCGCCCCTCGCTGGA----.....................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCCTGGCTGCC................................2111.001000010
....................................................................................................................................................................................................................................................................................................................TCGCCCCTCGCTGGA----TGCTC................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................................................................GCATCGC---------CTGTCTGAAG------G----------------------------------------------------------------------------------------------------------AGGAG................................................2311.001000001
...........ACA---------------------------------------------------------------------------------------------------------------ACAACAATACGA--------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
...........ACA---------------------------------------------------------------------------------------------------------------ACAACAATACGA--------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
droGri2
CAATAATAACAACA---------------------------------------------------------------------------------------------------------------ACAACAACAATAACAACAGCAGCAGCAG---------------------------------------CAACAACAGCGC--------------------------AAATCAG-------------------GTG--------------------------------------------AAGCGTCGTCCATCGCTGGA----TGCGCGCATCGC---------TTGCTTGAAG------G----------------------------------------------------------------------------------------------------------AGGAGC-GCGGCTTGGCTGCCG---ATTTCATCAAGCACATCTTCAATGTACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................GTCCATCGCTGGA----TGCGCGCATC...........................................................................................................................................................................................2311.00110
.....................................................................................................................................................................................................ACAGCGC--------------------------AAATCAG-------------------GTG--------------------------------------------AAGC.........................................................................................................................................................................................................................2111.00101
..................................................................................................................................................................................................................................................................................................................................A----TGCGCGCATCGC---------TTGCTTGAAG------................................................................................................................................................................2311.00110
.............................................................................................................................................................................................................................................................................................................................................CATCGC---------TTGCTTGAAG------G----------------------------------------------------------------------------------------------------------AGGA.................................................2111.00110
.........................................................................................................................................................................................................................................................................................................................CATCGCTGGA----TGCGCGCATCG..........................................................................................................................................................................................2111.00110
.....................................................................................................................................................................................................ACAGCGC--------------------------AAATCAG-------------------GTG--------------------------------------------AAGCGTCGTC...................................................................................................................................................................................................................2711.00110
.....................................................................................................................................................................................................ACAGCGC--------------------------AAATCAG-------------------GTG--------------------------------------------AAGCG........................................................................................................................................................................................................................2211.00110
.......................................................................................................................................TAACAACAGCAGCAGCAG---------------------------------------CAACAACAGC..................................................................................................................................................................................................................................................................................................................................2830.33110
............................................................................................................................................ACAGCAGCAGCAG---------------------------------------CAACAACA....................................................................................................................................................................................................................................................................................................................................21200.05101
droAna3
CAGCAGCATCAGCA--------------------------------------------------------GCAGCATCAGCAGCAGCAC-------C---------------------------AGCAACAGCAACAGCAGTT------------------------GCAC---------CA---------------GCAGCA------ACAGCAACTCCAGCATCTGCAGAACCAG-------------------CCC--------------------------------------------CCGCCTCTGCCCCCGCTGAA----CGCCAACATGAAGAGCCTGAAGTACCTGGAG------CACCT-------------------------------------------------------------------------------------------------------------GCGCTC-------------------------------CAGCTACCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................GCAGCAGCAC-------C---------------------------AGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................19120.081100000
...........GCA--------------------------------------------------------GCAGCATCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
CAGCAGCCAAAGCA--------------------------------------------------------ACAGCAATA---------------CGTCAAAGCAACATCAGCAACAGTAACAATAACAATTGCAACAACAATTACAAAAGCAA---------------------------------------------CAGTAACAGCAACAGA------A------------ACAG-------------------CTA--------------------------------------------CAAT-----CTAGCCCCA----------CGGGCTAG---------CTTCCCGGAGATCATGCAGCCACGCCTCTCGCTCAACGGGCTCCTCAACC------------------------------------------------------------------------------------CCTCGCTGATG---CCCT-----------CGCCCCGCCCCCTSizeHit CountTotal NormTotal
No Reads
droKik1
AAT----------------------------------------------------------------------------------------------------------------AACAACAACAACAATAACAATAACAATCCACCAAGCAG---------------------------------------------CACCAGC---------AGTGG-----------CAGCCAA-------------------GCC--------------------------------------------AAGCGTCGGCCTTCCCTAGA----TGCCAGGATTGC---------CTGCCTTAAG------G-------------------TAAGTCCCTTAAATCCTATTTAATTCGCTTTA-------------AACAAATATATAATTTTGAT-------TTCTT-TTTA-AAGGAGGAAC-GCGGCCTGGCAGCGG---ATTTCATCAAGCACATATTCAATGTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAACAA---------------------------------------------------------------------------------------------------------------TAACAACAACAACAACAACAATCCGCCAGGGAA---------------------------------------------CAGCGG--------------------------CAGTCAG-------------------GTG--------------------------------------------AAGCGCCGCCCCTCCCTGGA----CGCCAGAATCGC---------GTGCCTCAAG------G-------------------TAAGA------------AATTGGATGATCTTTATTCCTGACCCTCATGACTTATGCATCC------TCCGTTTTATTCCTTT-CAGGAGGAGC-GCGGCCTGGCAGCTG---ACTTCATCAAGCACATCTTCAATGTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
TACCATCCCCACCAGCTGC---ACGCCCACA--------CCCTGCCCCACCAGCA---------------GCAGCAACAGCAGCAACAG-------------------------------------CAACAGCAG------------------------------------------CAGCAGCAGCAGCAACA---ACAGCAGCAGCAACAGC------A------------ACAGCTGCACGGCGATCCCGACGACG------------------------------------------------------------AGGA----GGTGGAGAATGC---------CCGCCTGGAG------CAGGTGCGTCGC--------------------------------------------------------------------------------------------------------AAGCAGAACGCCC---AG----------------------CTCASizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAACTACAGCA--------------------------------------------------------GCAGCAGCAACAACAGCAGCATACCC---AGCCGG-------------------ATCCGCTGCAGCAACTAACCAACTACACG------------------------------CAGCAGCAGTT------------------------GCC------GCAGAGCTAC-------------------CCA--------------------------------------------CAACACCGTCCCCAGCCATA----TCAGCAGAATGT---------CTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCSizeHit CountTotal NormTotal
No Reads
droBia1
GAGGTGCATCCACG--------------------------------------------------------TCCGCTGCTGCTGCGGCAGCAGCCTCC---------------------------AATAACAATAATAATAATCCACCAGGAAG---------------------------------------------CAGTGG--------------------------AAACCAG-------------------GTG--------------------------------------------AAGCGCCGCCCATCACTGGA----TGCAAGAATCGC---------ATGCCTCAAG------G---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CATCACGCCCAGCAGCAACATCATGGCCATA--------CG---------CTGCACCCGCATCATACACACC----------------------------------------------------AGCAACAACAGCAGCAACACCACCAGCAG------------------------CACCAACAGCAACAGCA---ACAGCAGCACCACCAGC------A------------GCAG-------------------------------------------------------------------------------------------CAACATGCCGC---------CCAGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSizeHit CountTotal NormTotal
No Reads
droEug1
GGGGAGCTTCCACG--------------------------------------------------------TCCGCTGCCGCTGCGGCAGCTTCGTCC---------------------AATAACAATAACAACAATAATAATCCACCAGGAAG---------------------------------------------CAGTGG--------------------------TAATCAA-------------------GTG--------------------------------------------AAGCGCCGCCCATCGCTGGA----CGCCAGGATTGC---------ATGCCTCAAG------G-------------------TTAGT------------ACTTAATTCATTTTAATAAGAAATGTTAA-----------ATAGTAATGTTCGTTTTACGCTTTCCTAGGAGGAAC-GTGGACTGGCTGCAG---ACTTTATCAAGCACATCTTCAACGTGCTSizeHit CountTotal NormTotal
No Reads
dm3
TATCAACAGCAGCA--------------------------------------------------------TCAGCATCAACATCACCAGGC-------------------------------------------------------ACCGCAG------------------------CAACATCAGCAACAGGC---ACCGCAGCAGCAACAGTATCAGAAACCTCCGCATAAGCAA-------------------GTC------------------------------------------C-AGGTGCCATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................CGCAG------------------------CAACATCAGCAACAGG...........................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCAG------------------------CAACATCAGCAACAG............................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GAGGAGCGTCCACG--------------------------------------------------------TCCGCTGCAGCCGCGGCAGCGTCCTCC------------------AACAACAATAACAACAATAATAATAATCCACCAGGCAA---------------------------------------------CAGTGTC---------AACCT-----------CAATCAA-------------------GTA--------------------------------------------AAGCGCCGTCCATCTCTGGA----TGCTAGAATCGC---------ATGCCTTAAG------G---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................TCTCTGGA----TGCTAGAATCG..........................................................................................................................................................................................1911.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................TCTCTGGA----TGCTAGAATCGC---------ATGCCT..........................................................................................................................................................................2611.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................TCTGGA----TGCTAGAATC...........................................................................................................................................................................................1611.00100000010000000000
.............................................................................................................................................TCCACCAGGCAA---------------------------------------------CAGTGTC---------AACCT-----------C.....................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................TCTCTGGA----TGCTAGAATCGC---------ATGCCTT.........................................................................................................................................................................2711.00100010000000000000
droSec2
GAGGAGCGTCCACG--------------------------------------------------------TCCGCTGCAGCCGCGGCAGCGTCCTCC------------------AACAACAATAACAACAATAATAATAATCCACCAGGCAA---------------------------------------------CAGTGTC---------AACCT-----------CAATCAA-------------------GTA--------------------------------------------AAGCGCCGTCCATCTCTGGA----TGCTAGAATCGC---------ATGCCTTAAG------G---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................AATCCACCAGGCAA---------------------------------------------CAGTGTC---------......................................................................................................................................................................................................................................................................................................................2111.0010001
........................................................................................GCGTCCTCC------------------AACAACAATAACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
........................................................................................................................................................A---------------------------------------------CAGTGTC---------AACCT-----------CAATCAA-------------------GTA--------------------------------------------AAGCGC.......................................................................................................................................................................................................................2911.0010100
.........................................................................................................................................ATAATCCACCAGGCAA---------------------------------------------CAGT..................................................................................................................................................................................................................................................................................................................................2011.0010001
......................................................................................................................................................................................................................................CAATCAA-------------------GTA--------------------------------------------AAGCGCCGTCC..................................................................................................................................................................................................................2111.0010001
......................................................................................................................................................................................................................................CAATCAA-------------------GTA--------------------------------------------AAGCGCCGT....................................................................................................................................................................................................................1911.0010010
...........................................................................TGCAGCCGCGGCAGCGTCCTCC------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.........CCACG--------------------------------------------------------TCCGCTGCAGCCGCGGCAGCGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
................................................................................................................................................................................................................................................................GTA--------------------------------------------AAGCGCCGTCCATCTCTGG..........................................................................................................................................................................................................2211.0010010
.............................................................................................................................................TCCACCAGGCAA---------------------------------------------CAGTGTC---------A.....................................................................................................................................................................................................................................................................................................................2011.0010001
........................................................................................................................................................................................................................................................................................................................CCATCTCTGGA----TGCTAGAATCG..........................................................................................................................................................................................2211.0011000
.........................................................................................................................................ATAATCCACCAGGCAA---------------------------------------------CAGTGTC---------......................................................................................................................................................................................................................................................................................................................2311.0010100
droYak3
CAGCAGCAGCCACAACAACAGCAGCAGCTTA--------AA---------CAGCA------------------------------------GCAGC----------------------------AACAAGAACGACAGCAACA------------------------GCAC------TAACAGCAACAACAACA------------------------GCCGCTGCGACAACAGCAA-------------------CATCGACGACGACGGCGACGGCAACGGCGACTGCGACGT-----------CAACGC-CTCTGCCGGCGAACCGC---TATGGC---------CGGAGTAAAG------A----------------------------------------------------------------------------------------------------------AAAAGCCGCGGACGAGCGGCCA---CATTT--TCAGTTCAGTTCCAACGCTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAACAACGACCACAACGAA---GCGGCGG-AATGCTGAGTCCTCTGC------------------------CAGCAACAACAATAACAACAATACC----------------------------AGCACCACCAACAACAACA------------------------ATACCAGCAATAACAACAACAACAACA---ACAACAGCACCACG---------A------------ACAA-------------------CAA---------------------------CAATAATAATAATGTTAAAACAAAGCCC------------------------------------------------------------------------------GTGGACA------------------------------------------------------------------------CGAGTC-CCTACTTGACCCCCGAGAATCTCATCGAGCGCACCGTCGACGTCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:04 PM