ID:

dps_701

 Coordinate:

2:22025098-22025320 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.6 -17.0 -17.0

Flybase annnotation

CDS [Dpse\GA30107-cds]; exon [Dpse\GA30107:3]; exon [Dpse\GA30107:2]; CDS [Dpse\GA30107-cds]; intron [Dpse\GA30107-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAATGGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAACTGCAGTGAGTATATCTAGAGGGGATTCAGTGGGGTGCATTAAGATAACTCTTTCTTTAGTTTTCTTTTATTTGTTAAACTTTCTAATATATTTCTCTGTTTATGGCTGGCAAGAAAAGCACGCTGCAAGGCCTTGTAAGCAAGCACCCAGATCCCCGGTCTCCACTCTATACAGAACGATAACTAATTCAACTCTCTCTCTATCTCTGTGTCCCTCGCTATCCCTAGGCTCGTCCGAAGAAGGTCTCGATCTGTTCGGTTTGACGAACGGCAACAAC
**********************************************************************....((((.((((...((((.((((........)))).))))........................(((((.((((.......))))))))).)))).)))).****************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 M059
embryo
 SRR902012
CNS imaginal disc
 GSM343916
embryo
 V112
male body
..................................................................................................................................................................................................................................................................................................CTCGATCTGTTCGGTTTGACGAAC......... 24 0 1 2.00 2 2 0 0 0 0 0
.................TGCAGCTCCAGTTGACGACGC............................................................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGGTCTCGATCTGTTCGGTTTGACGA........... 26 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................CTGGCAAGAAAAGCACGCTGCA...................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................GAAAAGCACGCTGCAAGGCCT................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GATCTGTTCGGTTTGACGAAC......... 21 0 1 2.00 2 2 0 0 0 0 0
......................................................................TTCAGTGGGGTGCATTAAGA......................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TCTGTTCGGTTTGACGAACGG....... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................GTCTCGATCTGTTCGGTTTG............... 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................CTCTCTATTTCTGTGTCCCTC............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGAAGGTCTCGATCTGTTC..................... 19 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................CTAAGAAGGTCTCGATCTGTTCGGT.................. 25 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................GAAGAAGGTCTCGATCTGTTC..................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................TCTAATATATTTCTCTGTTTA............................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................GCTCCAGTTGACGACGCTCAAGAAC..................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................CACCCAGATCCCCGGTCTCCA................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGAAGGTCTCGATCTGTTCGG................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................TATCCCTAGGCTCGTCCGAAG...................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................TTTCTCTGTTTGTGGCTGGCA...................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CGATCTGTTCGGTTTGAC............. 18 0 1 1.00 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................GTTCGGTTTGACGAACGGCA..... 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................GGCTCGTCCGAAGAAGGTCT............................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................ACGATAACTAATTCAACTCTC................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................GAGGGGATTCAGTGGGGTGTT............................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TCGTCCGAAGAAGGTCTCGA............................ 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................CTTTCTAATATATTTCTCTGT.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................................................................AGCAAGCACCCAGATCCCCGG....................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..............................GACGACGCTCAAGAACTGCAGT............................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
...TGGTCCGCCGAACATGCAGC............................................................................................................................................................................................................................................................................................................ 20 1 2 1.00 2 2 0 0 0 0 0
.....................................................................ATTCAGTGGGGTGCATTAAGA......................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CCGAAGAAGGTCTCGATCTGT....................... 21 0 1 1.00 1 1 0 0 0 0 0
......................CTCCAGTTGACGACGCTCAA......................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................ATCTAGAGGGGATTCAGTGG..................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GAAGGGCTCGCTCTGTTCGGT.................. 21 2 1 1.00 1 0 0 0 0 0 1
.....................GCTCCAGTTGACGACGCTCA.......................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................GTCCACTCTATACAGAACGA.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...............................................................GAGGGGATTCAGTGGGGTGCA............................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................TATTTCTCTGTTTATGGCTGG........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTGTGTCCCTCGCTATCCC..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........CCGAACATGCAGCTCCAGTTG.................................................................................................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.....GTCCGCCGAACATGCAGCTCC......................................................................................................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................TCTCTCTATTTCTGTGTCCCT.............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................GTGTCCCTCGACATCTCTAGG................................................. 21 3 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TATGATCTTCCGAAGAAGGT................................. 20 3 6 0.17 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TTTGACGAACGGACTCAAC 19 3 20 0.10 2 0 0 0 2 0 0
.......................................................................................................................................................CTGACAAGTAAAGGACGCT......................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CTCCGAAGAACGTCTCTAT........................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTTACCAGGCGGGTTGTACGTCGAGGTCAACTGCTGCGAGTTCTTGACGTCACTCATATAGATCTCCCCTAAGTCACCCCACGTAATTCTATTGAGAAAGAAATCAAAAGAAAATAAACAATTTGAAAGATTATATAAAGAGACAAATACCGACCGTTCTTTTCGTGCGACGTTCCGGAACATTCGTTCGTGGGTCTAGGGGCCAGAGGTGAGATATGTCTTGCTATTGATTAAGTTGAGAGAGAGATAGAGACACAGGGAGCGATAGGGATCCGAGCAGGCTTCTTCCAGAGCTAGACAAGCCAAACTGCTTGCCGTTGTTG
******************************************************************************************************************************************************....((((.((((...((((.((((........)))).))))........................(((((.((((.......))))))))).)))).)))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M062
head
 GSM343916
embryo
 M022
male body
..................................................................................................................................................................................................GCTTGGGGCCAGAGGTGC............................................................................................................... 18 3 20 118.05 2361 2237 122 1 0 0 1
.............................................................................................................................................................................................................................................................................................................GCCAAACTGCTTGCCGTTGT.. 20 0 1 3.00 3 2 1 0 0 0 0
................................................................................................................................................................................................................................................................AGGGAGCGATAGGGATCCGAG.............................................. 21 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CAGAGCTAGACAAGCCAAACT.............. 21 0 1 2.00 2 1 0 0 1 0 0
.................ACGTCGAGGTCAACTGCTGC.............................................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
........................GGTCAACTGCTGCGAGTTCTT...................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................GAGCTAGACAAGCCAAACTGC............ 21 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................CGTGCGACGTTCCGGAACATT........................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
.........................................................................................................................................................CCGTTCTTTTCGTGCGACGTT..................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
....................................CGAGTTCTTGACGTCACTCAT.......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................TCGAGGTCAACTGCTGCGAG........................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................TAGGGGCCAGAGGTGAGATA........................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GTCTTGCTATTGATTAAGTTG..................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................TTTCGTGCGACGTTCCGGAAC.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................GGCCACAGGTGAGATATGTC....................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
......................GAGGTCAACTGCTGCGAGTTC........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.....................CGAGGTCAACTGCTGCGAGTT......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GATCCGAGCAGGCTTCTTCCA................................. 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................AGCCGAACTGCTAGCCGTTGT.. 21 2 1 1.00 1 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................TGAGCAGGCTTCTTCCAGAGC............................. 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................GGTCTAGGGGCCAGAGGTG................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................GTTCTTTTCGTGCGACGTTCC................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................AGAGAGATAGAGACACAGGGA.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................GCGACGTTCCGGAACATTCGT........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................CCAGAGGTGAGATATGTCTTG.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................CGATAGGGATCCGAGCAGGC......................................... 20 0 1 1.00 1 1 0 0 0 0 0
..............................CTGCCGCGAGTTCTTGACGTC................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..............................CTGCTGCGAGTTCTTGACGTC................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................TAGGGGCCAGAGGTGAGGTAT.......................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................GGCTTCTTCCAGAGCTAGACA....................... 21 0 1 1.00 1 1 0 0 0 0 0
................................GCTGCGAGTTCTTGACGTCA............................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................TTTGGGCCACAGGTGAGATATG......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................GTCTAGGGGCCACAGGTGAG.............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................GGATCCGAGCAGGCTTCTTCC.................................. 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................ATTCTATTGAGAAAGAAATCA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................GCTTCTTCCAGAGCTAGACAA...................... 21 0 1 1.00 1 0 0 1 0 0 0
................................................................TCCCCTGAGTCACCCCACGTA.............................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................CTTGGGGCCAGAGGTGCCATA........................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CCAGAGCTAGACAAGCCAAAC............... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TCCAGAGCTAGACAAGCCAAA................ 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CAGGCTTCTTCCAGAGCTAGA......................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................CCAGAGGTGAGATATGTCT...................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................GTTCCGGAACATTCGTTCGTG................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........GGGTTGTACGTCGAGGTCAAC.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...................................GCGAGTTCTTGACGTCACTC............................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................GGCTTGGGGCCAGAGGTG................................................................................................................ 18 2 5 0.80 4 4 0 0 0 0 0
.................................................................................................................................................................................................GGCTTGGGGCCAGAGGTGC............................................................................................................... 19 3 15 0.60 9 8 1 0 0 0 0
...................................................................................................................................................................................................CTTGGGGCCAGAGGTGCCAT............................................................................................................ 20 3 2 0.50 1 1 0 0 0 0 0
....................................................CTCATATAGACCGCCGCTAAG.......................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
..........GGCTTGTACGTCGAGGTCAAC.................................................................................................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
....CCAGGCGGCTTGTACGTCGAG.......................................................................................................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................CTTGGGGCCAGAGGTGCTA............................................................................................................. 19 3 13 0.46 6 4 2 0 0 0 0
...............................................................................................................................................................................................................................................................CAGGGAGCTGTAGAGATCCGA............................................... 21 3 3 0.33 1 0 1 0 0 0 0
...................................................................................................................................................................................................CTTGGGGCCAGAGGTGCT.............................................................................................................. 18 3 20 0.25 5 5 0 0 0 0 0
...................................................................................................................................................................................................CTTGGGGCCAGAGGTGTCA............................................................................................................. 19 3 20 0.20 4 4 0 0 0 0 0
..................................................................................................................................................................................................GCTTGGGGCCAGAGGTGA............................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................................TTCGTGCGACGTCACGGA................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 1 0
................................................................................................................................................................................................................................................................AGGGAGCTGTAGAGATCCGA............................................... 20 3 7 0.14 1 1 0 0 0 0 0
.......................................................AGATAGATCTCCACTAGGTC........................................................................................................................................................................................................................................................ 20 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................AGGTCTTGCCGTTGATTAAGT....................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0
...................................................................................................................................................................................................CTGGGGGCCAGAGGTGCCA............................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0
..................................................................................................................................................................................................GCTTGGGGCCAGAGGTGCG.............................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0
..................................................................................................................................................................................................CCTTGGGGCCAGAGGTGC............................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................................TGCTTGGGGCCAGAGGTG................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................ACTTGGGGCCAGAGGTGC............................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0
...............................................................................................................AAATAGTCAATTTAAAAGATT............................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:22025048-22025370 - dps_701 GAATGGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAACTGCAGTGAGTATATCT------A-GAGGGG-ATT-CAGTGG---GGT--------------------------GCAT---------------TAAGATAACT-CTTTCTTTAGTTTTCTTTTATTTGTTAA-ACTTTCTAATATA----------------------TT-TCT---------------CTG---TTTATGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTTGTAAGCAAG------CACCC-AGATCCCCG-GTC--T-CCACTCTATACAGA---------------------------ACGATAACTAATTCAACTCT----------------CTCTCTATCTCTGTGTCCCTC---GCTATCCCTAGGCTCGTCCGAAGAAGGTCTCGATCTGTTCGGTTTGACG------------------AACGGCAACAAC---
droPer2 scaffold_3:4806525-4806847 - GAATGGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAACTGCAGTGAGTATATCT------A-GAGGGG-ATT-CAGTGG---GGT--------------------------GCAT---------------TAAGATAACT-CTTTCTTTAGTCTTCTTTTATTTGTTAA-ACTTTCTAATATA----------------------TT-TCT---------------CTG---TTTATGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTTGTAAGCAAG------CACCC-AGATCCCCG-GTG--T-CCACTCTATACAGA---------------------------ACGATAACTAATTCAACTCT----------------CTCTCTATCTCTGTGTCCCTC---GCTATCCCTAGGCTCGTCCGAAGAAGGTCTCGATCTGTTCGGTTTGACG------------------AACGGCAACAAC---
droWil2 scf2_1100000004943:8432312-8432623 - AAACAAGCCACCAAATATGCAACTACAATTGACAACCCTCAAGAATTGCAGTGAGTATTATTAATAATAAAAGGGC-ATTTAAGTAG---CATACAAAATTT-------------------------T-----------------AGC-CCTG-------------------AATAA-AATTTAATATATA----------------------TTTTCT---------------GTTTT-TTTTTGGCTGGCAAGAAAAGCAAGC--TACAAAGCTTCGTAAGACTACAAA-------------------------CCTCT---------CCGA----------------------AAAAGGTATCTGTCGATTATT-----TATT---GAATTTATGT----------------CTTTTCCACATAGGCTCTTCCGAAGAAGGACTCGATTTGCTCGGATTGAGCACCAGCAGCAGCAATGCCAACGGCAACAACAGC
droVir3 scaffold_12855:8541236-8541463 + dvi_4501 TT---------------------------------------------------------------------------------------------------C-------------------------T---------------TTACC-TTTT---------CATTCTATTTGTCTA-TC---------TA------------TTTTCACTTGCTTTAC---------------ACT-C-ATTATGACTGGCAAGAAAAGAACGC--TGCAAAGCCTCGTAAGCAAGCAAGATC----------CCCA-TTA----ATACC-------C-TGCC------CCTGCCATTCCCGGCATAGGTTCAACT-TT-----------AAG-TAATCTATTTGTTT------------------ATCTCTCTCAGGCTCCTCGGAGGAGGGTCTGGACATGCTCGGTCTGAGC------------------AACGGCACAAAC---
droMoj3 scaffold_6540:23740607-23740804 + CT---------------------------------------------------------------------------------------------------A-------------------------T----------------------------------------------------C--TTTTATCT----------------------TTCTCTAC----------T--CTC---ATTATGGCTGGCAAGAAAAGCACGC--TGCAAAGCATCGTAAGGCATTAAGAAC----------CCCG-TAA----CTCCC---------TTCC------TG--------------TGTATGCATAGACTGATTTA-----AAC-TGATC----TGACC---------TCCCTCTGTAATTTTTATAGGCTCGTCGGAGGAGGGTCTGGACATGGTGGGACTAACC------------------AACGGCACAAAC---
droGri2 scaffold_15074:5123286-5123517 + TT---------------------------------------------------------------------------------------------------T-------------------------AC-TTG-------------TC-TTTT---------------G--TATTAT-GCTTAACGATTTATCTGTCTATCTAA-------------TCATCTAACTCTTTT--ATC---ATAATGACTGGCAAGAAAAGCACGC--TGCGAAGCCTCGTAAGAAAGCATA-GCTCCA-CTATCTCAA-AAT----G---------------------------------------------TAAATGCCAACGTACCTTTAAC-CAATTGTATTGTTC----------------GTTTTACGCACAGGCTCCTCGGAGGAGGGTCTCGACATGATCGGCTTGAGC------------------AATGGCACGAAC---
droAna3 scaffold_13340:22978945-22979243 + GAACCGGCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAATTGCAGTAAGTATT--------------GAG-ATT-CTGGTA---ACT--------------------------GGAT--TCTGAAATTTC------TTGGGTTTTTT-------------------TTTTA-ACG-TACCAATTA----------------------TTTTCT-----------TC--ACA---CTTTCGGCTGCCAAGAAAAGCATAC--TGCACGCCCTTGTAAGCAATATAGTGTCTCC-CGAATCCAAAGAACC-ATTTTC---------CACC------TC--------------AGAGTACATCCACTAATATTT-----------------TGTTC----------------A-TCCATTGGCAGGCTCATCAGAGGAGGGTCTGGATCTGTTCGGCCTGACC------------------AACGGCAACAAC---
droBip1 scf7180000396424:1246763-1247090 + GAACCGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTTAAGAATTGCAGTAAGTATGC----AGATACCAAGAC-ATTTA----------TAAGATGTTTGTGCCCTGATCTTGATTGGAT--TCTGAAATTTC------GTGGGGTTCTC-------------------TTTTA-ACT-TTCCATTTA----------------------TTTTCT-----------TC--TAA---CTTTCGGCTGCCAAGAAAAGCAAGC--TACTCGCCCTTGTAAGCAACAAAATGTCCCC-TGAATCCAAAGAATC-ATTTTC---------TACC------T---------------CGAGTACACCCACTAATATTT-----------------TGTTC----------------A-TCCATTGGCAGGCTCATCAGAGGAGGGTCTGGATCTGTTCGGCCTGACC------------------AACGGCAACAAC---
droKik1 scf7180000302634:467360-467622 + GAACCGACCGCCCAACATGCAATTGCAGCTAACGACGCTCAAGAACTGCAGTAAGTACATCT----TTA-GAAGGGAATT----TGG---GGT--------------------------GGG------------------------------------------------------------------------------------------------------------------T---TTTATAGCCGGCACTCATAGGACACTTTACAAGGCCTCGTAAGCAGACCAACGCAGCC-GCAACTCAA-CC----AAAATT---------CACTTCTCTAA---------------AGATCGCCTCCTCTAAAATAT------------TTT--TTTCT-------------T--A-ACCATTTTCAGGCTCCTCGGAGGAGGGCCTGGACCTGTTCGGCCTGAGC------------------AACGGCAACAAC---
droFic1 scf7180000453850:121096-121288 + TC---------------------------------------------------------------------------------------------------T----------------------------------------------------------------------TTTAA-ACTCTCACACATA----------------------TTCTCC---------------TTT---ATTTTGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTTGTAAGCAAGAAAATGCACCC-AGATCCCCA-ACT----CTTCC---------TCGA----------------------AGCGAACATCCACTAACCT--------------------TCAC----------------ATCTGACTTCCAGGTTCCTCGGAGGAGGGGCTGGACCTGTTCGGCCTGAGC------------------AACGGGAACAAC---
droEle1 scf7180000491104:2562222-2562436 + CT---------------------------------------------------------------------------------------------------T-------------------------CG-TTTTTC------TTGGGC-TGTT-------------------GCTAA-ACTTTTTCACTTA----------------------CTCTCC---------------ACT---TTCTTGGCTGGCAAGAAAAGCACGC--TGCAAGACCTCGTAAGCAAGCAAATGCACCC-AGATCCCAC-TTA----CCCTC---------TGCG----------------------TGGGATGACCTACTAAACTAC----------------ATTTCC----------------AAACGATTTGCAGGTTCCTCGGAGGAGGGTCTGGACATGTTCGGGCTGAGC------------------AATGGCAACAAC---
droRho1 scf7180000772422:1751-1956 - TT---------------------------------------------------------------------------------------------------T-------------------------T------TC------GTGAGT-TGTC-------------------GCTTA-ACTTTTCCACTTG----------------------TTCTCC---------------ACT---TTCTTGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTCGTAAGCAAGCAAATGCACCC-AGACCCCTT-TAC----CCTCT---------CCGT----------------------AGAAAGCACCCTCTAAATA--------------------ATGC----------------ACCCATTTTCCAGGTTCCTCGGAGGAGGGTCTGGACATGTTCGGGCTGAGC------------------AACGGCAACAAC---
droBia1 scf7180000302411:518980-519188 + TT---------------------------------------------------------------------------------------------------C-------------------------T------TT---ATTAT-TTC-TCTT-------------------GTTAA-ACTTTTCGATTTA----------------------TTCTCT---------------ACA---TTCTTGGCTGGCAAGAAAAGCACAC--TGCAAGACCTCGTAAGCAAGAA-ATTCACCC-AGTTCCCGA-TGT----CCTCT---------CTTT----------------------AGAAAGCCCCCACTAAAGTT------------------TTTGC----------------ACCCAATCTGCAGGTTCTTCGGAGGAGGGGCTGGACCTTTTCGGTCTTACC------------------AACGGAAACAAC---
droTak1 scf7180000415789:466166-466370 + TT---------------------------------------------------------------------------------------------------T-------------------------T-----------------TTC-TTTA-------------------GTTAA-ACTTTTCCATTTG----------------------TTCTCC---------------ACT---TTTTTGGCTGGCAAGAAAAGCACGC--TACAAGGCCCCGTAAGCAAGAAAGTTCCCCC-AGATCCCTA-TAG----CTTCC---------CGTT----------------------GAAGACCACCTATTAAAGTAC----------------TTTTGC----------------ACCCAATTTCCAGGTTCTTCGGAGGAGGGTCTGGACCTGTTTGGTCTGAGC------------------AACGGAAACAAC---
droEug1 scf7180000409759:718186-718391 + TT---------------------------------------------------------------------------------------------------T-------------------------T------TC---------TAC-TT-T-------------------ATAAAAA-CTTTTCATTTA----------------------CTTTTC---------------ACT---CTTTTGGCTGGCAAGAAAAGTACGC--TGCAATGCCTCGTAAGCAAAA-AATGCACCCCAGTTCCCTA-ATC----CCCCC---------TCCT----------------------GAAAATCA-TTACTGATGAATT----TACT-----------AA----------------ACTAATTTTTCAGGTTCCTCAGAGGAGGGTCTGGATCTGTTAGGTCTGACC------------------AACGGCAACAAC---
dm3 chr3R:767876-768073 + TT---------------------------------------------------------------------------------------------------T----------------------------------------------------------------------GTTAA-ACT---CCCTGTT----------------------TTCTCCAT----------T--TTG-TTTTTTGTGCTGGCAAGAAAAGCACGA--TGCATGGCCGCGTAAGCAAGAAGATGCACCC-AAATCCCAA-AAT----CCTTC---------TTCG----------------------ACAAAGCACCCAGTAATGTTA-----------------TTTCC----------------ACTTTATTTTCAGGCTCCTCGGAGGAGGGCCTGGACCTATTCGGTCTGAGC------------------AACGGGAACAAC---
droSim2 3r:694879-695098 + dsi_21282 TT-----------------------------------------------------------------------------------------------------------------------------------------AACATTACC-TTTT-------------------GTTAA-ACTTTTCCCTTTT----------------------TTCTCCATTTTGTTTTTT----TT--TTTTTGTGCTGGCAAGAAAAGCACGC--TGCATGGCCGCGTAAGCAAGATGATGCACCC-AAATCCCAA-AAA----CCTTC---------GCCG----------------------ACAAAGCACCCAGTAATCTTA-----------------TTTCC----------------ACTTTATTTTCAGGCTCCTCGGAGGAGGGTCTGGACCTATTCGGTCTGAGC------------------AACGGGAACAAC---
droSec2 scaffold_6:867310-867529 + TT-----------------------------------------------------------------------------------------------------------------------------------------AACATTACC-TTTT-------------------GTTAA-ACTTTTCCCTTTT----------------------TTCTCCATTTTTTTTGTT----T--TTTTTTGTGCTGGCAAGAAAAGCACGC--TGCATAGCCGCGTAAGCAAGATGATGCACCC-AAATCCCAA-AAT----CCTTC---------GCCG----------------------ACAAAGCACCCAGTAATCTTA-----------------TTTCC----------------ACTTTATTTTCAGGCTCCTCGGAGGAGGGTCTGGACCTATTCGGTCTGAGC------------------AACGGGAACAAC---
droYak3 3R:1093839-1094086 + AAAGTGG----------------------------------------------------------------------TTT-CAGAGGTAGTGT--------------------------TTCCAA--AG-CTA-TCTTTAACATTACG-TTTT-------------------TTTAA-TCTTTTCCCTTTT----------------------TTTTCC-T----------CCTGTT---TTTTTGTCTGGCAAGAAAAGCACGC--TGCATGGCTTCGTAAGCAAGAAGATACACCC-CAAACCCAA-AGT----ACTTT---------GCCT----------------------ACAAAGCACCCAGTAATGTAT-----------------TTTCC----------------AATTTATTTTTAGGCTCCTCGGAGGAGGGTCTGGACCTGTTCGGTCTAAGC------------------AACGGCAACAAC---
droEre2 scaffold_4770:1066678-1066874 + TT---------------------------------------------------------------------------------------------------C----------------------------------------------------------------------GTTAA-ATT--TCCTTTTT----------------------TTCTCCAT----------T--TTG---TTTTTTGCTGGCAAGAAAAGCACGC--TGCATGGCTTCGTAAGGAAGAAGATACACCC-AAATCCCAA-AAT----CCTTC---------AACT----------------------ACAAAGCACCCAGTAATGTAT-----------------TTTCC----------------GTTTTATTTTTAGGCTCCTCGGAGGAAGGTCTGGACCTGTTCGGTCTGAGC------------------AACGGGAACAAC---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAATGGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAACTGCAGTGAGTATATCT------A-GAGGGG-ATT-CAGTGG---GGT--------------------------GCAT---------------TAAGATAACT-CTTTCTTTAGTTTTCTTTTATTTGTTAA-ACTTTCTAATATA----------------------TT-TCT---------------CTG---TTTATGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTTGTAAGCAAG------CACCC-AGATCCCCG-GTC--T-CCACTCTATACAGA---------------------------ACGATAACTAATTCAACTCT----------------CTCTCTATCTCTGTGTCCCTC---GCTATCCCTAGGCTCGTCCGAAGAAGGTCTCGATCTGTTCGGTTTGACG------------------AACGGCAACAAC---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATCTGTTCGGTTTGACG------------------AAC............2412.0020200000000
.................TGCAGCTCCAGTTGACGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCTCGATCTGTTCGGTTTGACG------------------A..............2612.0020200000000
.......................................................................................................................................................................................................................................................CTGGCAAGAAAAGCACGC--TGCA....................................................................................................................................................................................................................................2212.0020200000000
..............................................................................................................................................................................................................................................................GAAAAGCACGC--TGCAAGGCCT..............................................................................................................................................................................................................................2112.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTTCGGTTTGACG------------------AAC............2112.0020200000000
..............................................................................TT-CAGTGG---GGT--------------------------GCAT---------------TAAGA....................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCGGTTTGACG------------------AACGG..........2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGATCTGTTCGGTTTG....................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTCTCGATCTGTTC..........................................1911.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGGTCTCGATCTGTTC..........................................2111.0010010000000
......................................................................................................................................................................................TCTAATATA----------------------TT-TCT---------------CTG---TTTA...............................................................................................................................................................................................................................................................2111.0010100000000
.....................GCTCCAGTTGACGACGCTCAAGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................CACCC-AGATCCCCG-GTC--T-CCA....................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTCTCGATCTGTTCGG........................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCTAGGCTCGTCCGAAG...........................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGTTCGGTTTGAC..................................1811.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGTTTGACG------------------AACGGCA........2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGTCCGAAGAAGGTCT....................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................ACGATAACTAATTCAACTCT----------------C.........................................................................................................2111.0010100000000
......................................................................GAGGGG-ATT-CAGTGG---GGT--------------------------GTT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCGAAGAAGGTCTCGA.................................................2011.0010100000000
...................................................................................................................................................................................CTTTCTAATATA----------------------TT-TCT---------------CTG---T..................................................................................................................................................................................................................................................................2111.0010000000001
.........................................................................................................................................................................................................................................................................................AGCAAG------CACCC-AGATCCCCG-G.............................................................................................................................................................................................2111.0010000010000
..............................GACGACGCTCAAGAACTGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.............................................................................ATT-CAGTGG---GGT--------------------------GCAT---------------TAAGA....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGAAGGTCTCGATCTGT............................................2111.0010100000000
......................CTCCAGTTGACGACGCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................ATCT------A-GAGGGG-ATT-CAGTGG---.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................GCTCCAGTTGACGACGCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................GAGGGG-ATT-CAGTGG---GGT--------------------------GCA.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................TA----------------------TT-TCT---------------CTG---TTTATGGCTGG........................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTCCCTC---GCTATCCC..........................................................................2011.0010100000000
droPer2
GAATGGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAACTGCAGTGAGTATATCT------A-GAGGGG-ATT-CAGTGG---GGT--------------------------GCAT---------------TAAGATAACT-CTTTCTTTAGTCTTCTTTTATTTGTTAA-ACTTTCTAATATA----------------------TT-TCT---------------CTG---TTTATGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTTGTAAGCAAG------CACCC-AGATCCCCG-GTG--T-CCACTCTATACAGA---------------------------ACGATAACTAATTCAACTCT----------------CTCTCTATCTCTGTGTCCCTC---GCTATCCCTAGGCTCGTCCGAAGAAGGTCTCGATCTGTTCGGTTTGACG------------------AACGGCAACAAC---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................AGTTGACGACGCTCAAGAACTGCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGAAGAAGGTCTCGATCTGTT...........................................2512.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGATCTGTTCGGTTTGACG------------------AAC............2612.002200000
...........................................................TCT------A-GAGGGG-ATT-CAGTGG---G........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................TA----------------------TT-TCT---------------CTG---TTTATGGCTGG........................................................................................................................................................................................................................................................2111.001010000
................................CGACGCTCAAGAACTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGAAGGTCTCGATCTGTT...........................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................C---GCTATCCCTAGGCTCGTCCG..............................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCGATCTGTTCGGTTTGAC..................................2311.001100000
...............................ACGACGCTCAAGAACTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.........................CAGTTGACGACGCTCAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGAAGGTCTCGATC...............................................1811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGTGTCCCTC---GCTATC............................................................................2111.001000010
droWil2
AAACAAGCCACCAAATATGCAACTACAATTGACAACCCTCAAGAATTGCAGTGAGTATTATTAATAATAAAAGGGC-ATTTAAGTAG---CATACAAAATTT-------------------------T-----------------AGC-CCTG-------------------AATAA-AATTTAATATATA----------------------TTTTCT---------------GTTTT-TTTTTGGCTGGCAAGAAAAGCAAGC--TACAAAGCTTCGTAAGACTACAAA-------------------------CCTCT---------CCGA----------------------AAAAGGTATCTGTCGATTATT-----TATT---GAATTTATGT----------------CTTTTCCACATAGGCTCTTCCGAAGAAGGACTCGATTTGCTCGGATTGAGCACCAGCAGCAGCAATGCCAACGGCAACAACAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACTCGATTTGCTCGGA.......................................2212.00200200
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGAAGGACTCGATTTGCT...........................................2211.00110000
...........................................................................................................................................................................................................................................TTTT-TTTTTGGCTGGCAAGA...................................................................................................................................................................................................................................................2011.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGGACTCGATTTGCTCGGATTG....................................2811.00110000
.............................................................................................................................................................................................TA----------------------TTTTCT---------------GTTTT-TTTTTGGC...........................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCGATTTGCTCGGATTGAGC.................................2411.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGATTTGCTCGGATTGAGCACC..............................2911.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTCGGATTGAGCACC..............................2111.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAATGCCAACGG..........2111.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGGACTCGATTTGCTC..........................................2111.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCGATTTGCTCGGATTGA...................................2211.00110000
.......................................................................................................................................................................................................................TTCT---------------GTTTT-TTTTTGGCTGGC.......................................................................................................................................................................................................................................................2111.00101000
.............................TGACAACCCTCAAGAATTGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTGAGCACCAGCAGCAGCAATGC................2711.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGGACTCGATTTGCTCGGA.......................................2411.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGGACTCGATTTGCT...........................................2011.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTCGGATTGAGCACCAGCA..........................2511.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGGACTCGATTTGCT...........................................2111.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTCCGAAGAAGGACTCGAT................................................2311.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGAAGGACTCGATTTGCC...........................................2211.00110000
droVir3
TT---------------------------------------------------------------------------------------------------C-------------------------T---------------TTACC-TTTT---------CATTCTATTTGTCTA-TC---------TA------------TTTTCACTTGCTTTAC---------------ACT-C-ATTATGACTGGCAAGAAAAGAACGC--TGCAAAGCCTCGTAAGCAAGCAAGATC----------CCCA-TTA----ATACC-------C-TGCC------CCTGCCATTCCCGGCATAGGTTCAACT-TT-----------AAG-TAATCTATTTGTTT------------------ATCTCTCTCAGGCTCCTCGGAGGAGGGTCTGGACATGCTCGGTCTGAGC------------------AACGGCACAAAC---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGC------------------AACGGCACAAAC---2011.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAAGCCTCGTAAGCAAGCAAG................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGGACATGCTCGGTCTGAGC------------------A..............2511.001000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GAAAAGAACGC--TGCAAAGCCTCGTAAGCAAGC...................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATGCTCGGTCTGAGC------------------AAC............2411.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTGGACATGCTCGGTCTGA...................................2311.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
CT---------------------------------------------------------------------------------------------------A-------------------------T----------------------------------------------------C--TTTTATCT----------------------TTCTCTAC----------T--CTC---ATTATGGCTGGCAAGAAAAGCACGC--TGCAAAGCATCGTAAGGCATTAAGAAC----------CCCG-TAA----CTCCC---------TTCC------TG--------------TGTATGCATAGACTGATTTA-----AAC-TGATC----TGACC---------TCCCTCTGTAATTTTTATAGGCTCGTCGGAGGAGGGTCTGGACATGGTGGGACTAACC------------------AACGGCACAAAC---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................TTCTCTAC----------T--CTC---ATTATGGCTG.........................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGAGGAGGGTCTGGACATG.............................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATGGTGGGACTAACC------------------AACGGC.........2711.001100000
....................................................................................................................................................................................................................................................................................................................................................TG--------------TGTATGCATAGACTGATTT............................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATGGTGGGACTAACC------------------AACG...........2511.001100000
....................................................................................................................................................................................................................................................................CACGC--TGCAAAGCATCGTAAGGC......................................................................................................................................................................................................................2311.001000010
droGri2
TT---------------------------------------------------------------------------------------------------T-------------------------AC-TTG-------------TC-TTTT---------------G--TATTAT-GCTTAACGATTTATCTGTCTATCTAA-------------TCATCTAACTCTTTT--ATC---ATAATGACTGGCAAGAAAAGCACGC--TGCGAAGCCTCGTAAGAAAGCATA-GCTCCA-CTATCTCAA-AAT----G---------------------------------------------TAAATGCCAACGTACCTTTAAC-CAATTGTATTGTTC----------------GTTTTACGCACAGGCTCCTCGGAGGAGGGTCTCGACATGATCGGCTTGAGC------------------AATGGCACGAAC---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GAACCGGCCGCCCAACATGCAGCTCCAGTTGACGACGCTCAAGAATTGCAGTAAGTATT--------------GAG-ATT-CTGGTA---ACT--------------------------GGAT--TCTGAAATTTC------TTGGGTTTTTT-------------------TTTTA-ACG-TACCAATTA----------------------TTTTCT-----------TC--ACA---CTTTCGGCTGCCAAGAAAAGCATAC--TGCACGCCCTTGTAAGCAATATAGTGTCTCC-CGAATCCAAAGAACC-ATTTTC---------CACC------TC--------------AGAGTACATCCACTAATATTT-----------------TGTTC----------------A-TCCATTGGCAGGCTCATCAGAGGAGGGTCTGGATCTGTTCGGCCTGACC------------------AACGGCAACAAC---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................CT--------------------------GGAT--TCTGAAATTTC------TT...................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCTGGATCTGTTCGGC.......................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGGTCTGGATCTGTT...........................................2011.001010000
droBip1
GAACCGTCCGCCCAACATGCAGCTCCAGTTGACGACGCTTAAGAATTGCAGTAAGTATGC----AGATACCAAGAC-ATTTA----------TAAGATGTTTGTGCCCTGATCTTGATTGGAT--TCTGAAATTTC------GTGGGGTTCTC-------------------TTTTA-ACT-TTCCATTTA----------------------TTTTCT-----------TC--TAA---CTTTCGGCTGCCAAGAAAAGCAAGC--TACTCGCCCTTGTAAGCAACAAAATGTCCCC-TGAATCCAAAGAATC-ATTTTC---------TACC------T---------------CGAGTACACCCACTAATATTT-----------------TGTTC----------------A-TCCATTGGCAGGCTCATCAGAGGAGGGTCTGGATCTGTTCGGCCTGACC------------------AACGGCAACAAC---SizeHit CountTotal NormTotal
No Reads
droKik1
GAACCGACCGCCCAACATGCAATTGCAGCTAACGACGCTCAAGAACTGCAGTAAGTACATCT----TTA-GAAGGGAATT----TGG---GGT--------------------------GGG------------------------------------------------------------------------------------------------------------------T---TTTATAGCCGGCACTCATAGGACACTTTACAAGGCCTCGTAAGCAGACCAACGCAGCC-GCAACTCAA-CC----AAAATT---------CACTTCTCTAA---------------AGATCGCCTCCTCTAAAATAT------------TTT--TTTCT-------------T--A-ACCATTTTCAGGCTCCTCGGAGGAGGGCCTGGACCTGTTCGGCCTGAGC------------------AACGGCAACAAC---SizeHit CountTotal NormTotal
No Reads
droFic1
TC---------------------------------------------------------------------------------------------------T----------------------------------------------------------------------TTTAA-ACTCTCACACATA----------------------TTCTCC---------------TTT---ATTTTGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTTGTAAGCAAGAAAATGCACCC-AGATCCCCA-ACT----CTTCC---------TCGA----------------------AGCGAACATCCACTAACCT--------------------TCAC----------------ATCTGACTTCCAGGTTCCTCGGAGGAGGGGCTGGACCTGTTCGGCCTGAGC------------------AACGGGAACAAC---SizeHit CountTotal NormTotal
No Reads
droEle1
CT---------------------------------------------------------------------------------------------------T-------------------------CG-TTTTTC------TTGGGC-TGTT-------------------GCTAA-ACTTTTTCACTTA----------------------CTCTCC---------------ACT---TTCTTGGCTGGCAAGAAAAGCACGC--TGCAAGACCTCGTAAGCAAGCAAATGCACCC-AGATCCCAC-TTA----CCCTC---------TGCG----------------------TGGGATGACCTACTAAACTAC----------------ATTTCC----------------AAACGATTTGCAGGTTCCTCGGAGGAGGGTCTGGACATGTTCGGGCTGAGC------------------AATGGCAACAAC---SizeHit CountTotal NormTotal
No Reads
droRho1
TT---------------------------------------------------------------------------------------------------T-------------------------T------TC------GTGAGT-TGTC-------------------GCTTA-ACTTTTCCACTTG----------------------TTCTCC---------------ACT---TTCTTGGCTGGCAAGAAAAGCACGC--TGCAAGGCCTCGTAAGCAAGCAAATGCACCC-AGACCCCTT-TAC----CCTCT---------CCGT----------------------AGAAAGCACCCTCTAAATA--------------------ATGC----------------ACCCATTTTCCAGGTTCCTCGGAGGAGGGTCTGGACATGTTCGGGCTGAGC------------------AACGGCAACAAC---SizeHit CountTotal NormTotal
No Reads
droBia1
TT---------------------------------------------------------------------------------------------------C-------------------------T------TT---ATTAT-TTC-TCTT-------------------GTTAA-ACTTTTCGATTTA----------------------TTCTCT---------------ACA---TTCTTGGCTGGCAAGAAAAGCACAC--TGCAAGACCTCGTAAGCAAGAA-ATTCACCC-AGTTCCCGA-TGT----CCTCT---------CTTT----------------------AGAAAGCCCCCACTAAAGTT------------------TTTGC----------------ACCCAATCTGCAGGTTCTTCGGAGGAGGGGCTGGACCTTTTCGGTCTTACC------------------AACGGAAACAAC---SizeHit CountTotal NormTotal
No Reads
droTak1
TT---------------------------------------------------------------------------------------------------T-------------------------T-----------------TTC-TTTA-------------------GTTAA-ACTTTTCCATTTG----------------------TTCTCC---------------ACT---TTTTTGGCTGGCAAGAAAAGCACGC--TACAAGGCCCCGTAAGCAAGAAAGTTCCCCC-AGATCCCTA-TAG----CTTCC---------CGTT----------------------GAAGACCACCTATTAAAGTAC----------------TTTTGC----------------ACCCAATTTCCAGGTTCTTCGGAGGAGGGTCTGGACCTGTTTGGTCTGAGC------------------AACGGAAACAAC---SizeHit CountTotal NormTotal
No Reads
droEug1
TT---------------------------------------------------------------------------------------------------T-------------------------T------TC---------TAC-TT-T-------------------ATAAAAA-CTTTTCATTTA----------------------CTTTTC---------------ACT---CTTTTGGCTGGCAAGAAAAGTACGC--TGCAATGCCTCGTAAGCAAAA-AATGCACCCCAGTTCCCTA-ATC----CCCCC---------TCCT----------------------GAAAATCA-TTACTGATGAATT----TACT-----------AA----------------ACTAATTTTTCAGGTTCCTCAGAGGAGGGTCTGGATCTGTTAGGTCTGACC------------------AACGGCAACAAC---SizeHit CountTotal NormTotal
No Reads
dm3
TT---------------------------------------------------------------------------------------------------T----------------------------------------------------------------------GTTAA-ACT---CCCTGTT----------------------TTCTCCAT----------T--TTG-TTTTTTGTGCTGGCAAGAAAAGCACGA--TGCATGGCCGCGTAAGCAAGAAGATGCACCC-AAATCCCAA-AAT----CCTTC---------TTCG----------------------ACAAAGCACCCAGTAATGTTA-----------------TTTCC----------------ACTTTATTTTCAGGCTCCTCGGAGGAGGGCCTGGACCTATTCGGTCTGAGC------------------AACGGGAACAAC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTATTTTCAGGCTCCTCG...............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGAGGGCCTGGACCTATTC..........................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CATGGCCGCGTAAGCAAGAAGATGCAC...........................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGAGGAGGGCCTGGACC...............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAGGAGGGCCTGGAC................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGTCTGAGC------------------AAC............1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................A-----------------TTTCC----------------ACTTTATTTTCAGGCTCC..................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATTCGGTCTGAGC------------------AACG...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
............................................................................................................................................................................................................................................................AAGAAAAGCACGA--TGCATGG.................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TCG----------------------ACAAAGCACCCAGTAATGTTA-----------------TT.......................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CAAGAAAAGCACGA--TGCATGG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................T---CCCTGTT----------------------TTCTCCAT----------T--TTG-TTTTTTGT.............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGC------------------AACGGGAACAAC---1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AAGAAAAGCACGA--TGCATGGC................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGAGGAGGGCCTGG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGGAGGGCCTGGACCTATTCGGTC......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAGCACCCAGTAATGTTA-----------------TTT......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGAGGAGGGCCTGGACCTAT............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCGGTCTGAGC------------------AACGGGA........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGAGGAGGGCCTGGA.................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TGGCAAGAAAAGCACGA--TGCAA...................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................T--TTG-TTTTTTGTGCTGGCAAGA...................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGGCCTGGACCTATTCGGTC......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGAGGGCCTGGACCTATTCGG........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................T----------------------TTCTCCAT----------T--TTG-TTTTTTGT.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCGGTCTGAGC------------------AACGGG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CATGGCCGCGTAAGCAAGAAGATG..............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
TT-----------------------------------------------------------------------------------------------------------------------------------------AACATTACC-TTTT-------------------GTTAA-ACTTTTCCCTTTT----------------------TTCTCCATTTTGTTTTTT----TT--TTTTTGTGCTGGCAAGAAAAGCACGC--TGCATGGCCGCGTAAGCAAGATGATGCACCC-AAATCCCAA-AAA----CCTTC---------GCCG----------------------ACAAAGCACCCAGTAATCTTA-----------------TTTCC----------------ACTTTATTTTCAGGCTCCTCGGAGGAGGGTCTGGACCTATTCGGTCTGAGC------------------AACGGGAACAAC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGAGGGTCTGGACCTATTCGGTCTG....................................2911.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCGGTCTGAGC------------------AACGGGAA.......2311.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGAGGGTCTGGACCT..............................................1911.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTATTCGGTCTGAGC------------------AACGGGAA.......2811.00100000000000010000
............................................................................................................................................................................................................................................................AAGAAAAGCACGC--TGCATGGC................................................................................................................................................................................................................................2111.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGAGGGTCTGGACCTATTC..........................................2311.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGAGGAGGGTCTGGAC................................................2311.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATTCGGTCTGAGC------------------AACGGGAA.......2411.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGTCTGAGC------------------AACGGGAA.......2111.00100100000000000000
............................................................................................................................................................................................................................TTTTGTTTTTT----TT--TTTTT...............................................................................................................................................................................................................................................................18200.05100010000000000000
droSec2
TT-----------------------------------------------------------------------------------------------------------------------------------------AACATTACC-TTTT-------------------GTTAA-ACTTTTCCCTTTT----------------------TTCTCCATTTTTTTTGTT----T--TTTTTTGTGCTGGCAAGAAAAGCACGC--TGCATAGCCGCGTAAGCAAGATGATGCACCC-AAATCCCAA-AAT----CCTTC---------GCCG----------------------ACAAAGCACCCAGTAATCTTA-----------------TTTCC----------------ACTTTATTTTCAGGCTCCTCGGAGGAGGGTCTGGACCTATTCGGTCTGAGC------------------AACGGGAACAAC---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................AAT----CCTTC---------GCCG----------------------ACAAAGCAC......................................................................................................................................2111.0011000
droYak3
AAAGTGG----------------------------------------------------------------------TTT-CAGAGGTAGTGT--------------------------TTCCAA--AG-CTA-TCTTTAACATTACG-TTTT-------------------TTTAA-TCTTTTCCCTTTT----------------------TTTTCC-T----------CCTGTT---TTTTTGTCTGGCAAGAAAAGCACGC--TGCATGGCTTCGTAAGCAAGAAGATACACCC-CAAACCCAA-AGT----ACTTT---------GCCT----------------------ACAAAGCACCCAGTAATGTAT-----------------TTTCC----------------AATTTATTTTTAGGCTCCTCGGAGGAGGGTCTGGACCTGTTCGGTCTAAGC------------------AACGGCAACAAC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGTTCGGTCTAAGC------------------AACGGC.........2520.50101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGTCTAAGC------------------AACGGC.........1920.50100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTGGACCTGTTCGGT.......................................1920.50101000000000
droEre2
TT---------------------------------------------------------------------------------------------------C----------------------------------------------------------------------GTTAA-ATT--TCCTTTTT----------------------TTCTCCAT----------T--TTG---TTTTTTGCTGGCAAGAAAAGCACGC--TGCATGGCTTCGTAAGGAAGAAGATACACCC-AAATCCCAA-AAT----CCTTC---------AACT----------------------ACAAAGCACCCAGTAATGTAT-----------------TTTCC----------------GTTTTATTTTTAGGCTCCTCGGAGGAAGGTCTGGACCTGTTCGGTCTGAGC------------------AACGGGAACAAC---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGAGGAAGGTCTG...................................................2012.0020000200
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCGGTCTGAGC------------------AACGGGAACA.....2511.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCGGTCTGAGC------------------AACGGGA........2211.0010100000

Generated: 05/17/2015 at 11:04 PM