ID:

dps_684

 Coordinate:

2:21197686-21197836 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA18345-cds]; CDS [Dpse\GA18345-cds]; exon [Dpse\GA18345:8]; intron [Dpse\GA18345-in]; exon [Dpse\GA18345:9]; CDS [Dpse\GA18345-cds]; intron [Dpse\GA18345-in]

No Repeatable elements found

Sense Strand Reads

------------------------------######################################################################################################---------------------------------------------------------------------##################################################
CCAGCCCAGCACAGAACACAGCTCTACGACATGGCCAGTGCTCCTCTGATGCTTGAGAACCTTCTATACAAAAAACGCAATTTGGTTTATGCCTTTGCCCGCCATCGTCTGTTTCTGTTATGCAAACAATCGGTTTGGTTCCCCCTAAAAATCAAATTAAAATTATTTGATAATGAACTCTATTTTTCCTTTTTATTACAGCTAGTACGAGTGCAGTCTGCGGAGGGCATCAAACGCATTGAGATCTCACC
*************************************************************************...((((...(((....))).))))..........................******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M062
head
 M022
male body		 SRR902011
testis
 M059
embryo
................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCATCA................... 24 0 1 4.00 4 2 1 1 0 0 0 0
................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCATC.................... 23 0 1 4.00 4 0 3 1 0 0 0 0
.................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCATC.................... 22 0 1 4.00 4 1 3 0 0 0 0 0
.................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCA...................... 20 0 1 2.00 2 1 1 0 0 0 0 0
...........CAGAACACAGCTCTACGAC............................................................................................................................................................................................................................. 19 0 1 2.00 2 1 0 1 0 0 0 0
...........CAGAACACAGCTCTACGACA............................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................TCGTCTGTTTCTGTTATGCA............................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCA...................... 19 0 1 2.00 2 1 1 0 0 0 0 0
.........................................................................AACGCAATTTGGTTTATGCC.............................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
..........................................CCTCTGATGCTTGAGAACC.............................................................................................................................................................................................. 19 0 1 2.00 2 1 0 0 1 0 0 0
.......................................................................................................................................................................................................CGCTAGTACGAGTGCAGTCT................................ 20 1 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCA...................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................CGCCATCGTCTGTTTCTGTTATGCA............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCA...................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.................................GCCAGTGCTCCTCTGATGCTT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....CCAGCACAGAACACAGCTCTACGA.............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CCGCCATCGTCTGTTTCTGTT.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................CTCTGATGCTTGAGAACCTTCT.......................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................AAACGCAATTTGGTTTATGCCTTT........................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..............................ATGGCCAGTGCTCCTCTGATGCTTGAGA................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCGGAGGGCATCAAACGCATTGAGAT...... 26 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTACGAGTGCAGTCTGCGGAGGGC....................... 25 0 1 1.00 1 0 1 0 0 0 0 0
........GCACAGAACACAGCTCTACGACATG.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................CGTCTGTTTCTGTTATGCAAACA........................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0
............................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGC....................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...............ACACAGCTCTACGACATGGCC....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TTTGCCCGCCATCGTCTGTTTCTGTTAT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GCCATCGTCTGTTTCTGTTATG................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCATCA................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................ATCGTCTGTTTCTGTTATGCAAACAAT......................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
....................................AGTGCTCCTCTGATGCTTG.................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................TGCCTTTGCCCGCCATCGTCTG............................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................TGGTTTATGCCTTTGCCCGCCATCGTCT............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGCA...................... 23 0 1 1.00 1 0 1 0 0 0 0 0
....................................AGTGCTCCTCTGATGCTTGAG.................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................TGGCCAGTGCTCCTCTGAT......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTACGAGTGCAGTCTGCGGAGGGCA...................... 26 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GGAGGGCATCAAACGCATTGAG........ 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................GATGCTTGAGAACCTTCTATA....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................GCTTGAGAACCTTCTATACA..................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.............................................CTGATGCTTGAGAACCTTC........................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGCGGAGGGCATCAAACGCA............. 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGC....................... 18 0 1 1.00 1 1 0 0 0 0 0 0
............................................TCTGATGCTTGAGAACCTTCT.......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.CAGCCCAGCACAGAACACA....................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCATCAAAC................ 25 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................ATTTGGTTTATGCCTTTGCCCGC..................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................AGTACGAGTGCAGTCTGCGGA........................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................TTTTATTACAGATAGTACCA......................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCATC.................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................GCTTGAGAACCTTCTATACAAA................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CCGCCATCGTCTGTTTCTGTTATG................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TCAAACGCATTGAGATCTCACC 22 0 1 1.00 1 1 0 0 0 0 0 0
.....................................GTGCTCCTCTGATGCTTGA................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................TCGCTAGTACGAGTGCAGTCTGCGGAG.......................... 27 2 1 1.00 1 0 0 1 0 0 0 0
.....................................GTGCTCCTCTGATGCTTGAG.................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................CCTTTGCCCGCCATCGTCTGTT.......................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................GCCCGCCATCGTCTGTTTCTGTTATGCA............................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.................................GCCAGTGCTCCTCTGATGCTTGAGAACC.............................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCATCAAACGCA............. 27 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCAT..................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................CTCTGATGCTTGAGAACCTTCTATA....................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCAT..................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCGGAGGGCATCAAACGCA............. 19 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................GGACGAGTGCAGTCTGCGGAGGGCAT..................... 26 1 1 1.00 1 0 0 0 1 0 0 0
.....................................GTGCTCCTCTGATGCTTGAGAACC.............................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................TCGTCTGTTTCTGTTATGCAAAC............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................TGCTTGAGAACCTTCTATACAAAA.................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
...........CAGAACACAGCTCTACGACATGGCC....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGCATC.................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.....................................GTGCTCCTCTGATGCTTGAGAACCTTCT.......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
................................GGCCAGTGCTCCTCTGATGCTTGAGAAC............................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
....................GCTCTACGACATGGCCAGTG................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................TCTGATGCTTGAGAACCTTCTATACAAA................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................TATGCCTTTGCCCGCCATCGTCTG............................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
..............................ATGGCCAGTGCTCCTCTGATGCTT..................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................GCCCGCCATCGTCTGTTTCTGTTAT.................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................GTTTCTGTTATGCAAACAATCGCTA.................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.........................ACGACATGGCCAGTGCTCCT.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCATCA................... 25 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGCGGAGGGCATCAAACGCATTGAGA....... 26 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCATCA................... 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GCCATCGTCTGTTTCTGTTATGCA............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................AACGCAATTTGGTTTATGCCTTT........................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................TGCCCGCCATCGTCTGTTTCTGTTA................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TAGTACGAGTGCAGTCTGCGG............................ 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................TGCTCCTCTGATGCTTGAGAAC............................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................................CCTCTGATGCTTGAGAACCT............................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................TCGTCTGTTTCTGTTATGCAAACAATC........................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TTTGCCCGCCATCGTCTGTTTC........................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0
..................................................GCTTGAGAACCTTCTATAC...................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TTTGCCCGCCATCGTCTGTTTCT....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTGCGGAGGGCATCAAACG............... 19 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTCTGCGGAGGGCATCAAACGC.............. 23 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGC....................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................CGACATGGCCAGTGCTCCTC............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCAAACGCATTGAGATCTC... 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................ACGCAATTTGGTTTATGCC.............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0
......CAGCACAGAACACAGCTCTACG............................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................CTGATGCTTGAGAACCTTCTATA....................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...............................TGGCCAGTGCTCCTCTGATG........................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................GCCTTTGCCCGCCATCGTCTG............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CTGCGGAGGGCATCAAACGCA............. 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................ATTTGGTTTATGCCTTTGCCCGCCATCGT............................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GGGCATCAAACGCATTGA......... 18 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................GCCCGCCATCGTCTGTTTCTGTC.................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................................TTGATTATGCCTGTGCCCGCC.................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................TTTTTATTACAAATAGTACCAG........................................ 22 3 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................ATCGCTAGTACGAGTGCA.................................... 18 2 4 0.25 1 0 0 1 0 0 0 0
........................................TTCCTCTGATGATTGTGAAC............................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0

Anti-sense strand reads

GGTCGGGTCGTGTCTTGTGTCGAGATGCTGTACCGGTCACGAGGAGACTACGAACTCTTGGAAGATATGTTTTTTGCGTTAAACCAAATACGGAAACGGGCGGTAGCAGACAAAGACAATACGTTTGTTAGCCAAACCAAGGGGGATTTTTAGTTTAATTTTAATAAACTATTACTTGAGATAAAAAGGAAAAATAATGTCGATCATGCTCACGTCAGACGCCTCCCGTAGTTTGCGTAACTCTAGAGTGG
*******************************************************************************************************************************...((((...(((....))).))))..........................************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM343916
embryo
....................................................................................................CGGTAGCAGTCAAAGACAA.................................................................................................................................... 19 1 1 1.00 1 1 0 0
..............................................................AGATATGTTGTCTGCGTTAAAT....................................................................................................................................................................... 22 3 2 0.50 1 0 1 0
................................................................................................................................................................................TGAGAAAAAAAGGAAAAATA....................................................... 20 1 3 0.33 1 1 0 0
...........................................................................................GGAAACGCGCGGTAGTAGACG........................................................................................................................................... 21 3 5 0.20 1 1 0 0
............................................................................................................................................................................TATTTGAGATAAACAGGAC............................................................ 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:21197636-21197886 - dps_684 CCA--------------------------------GCCC---------------A-G---------CA---CAGAACACAGCTCTA-CGACATGGCCAGTGCTCCTCTGATGCTTGAGAACCTTCTATACAAAAAACGCAATTTGGTTTATGCCTTTGCCCGCCATCGTCTGTTTCTGTTATGCAAACAATCGGTTTG-GTTCCCCCTAAAAATCA--------------------------------------------AATTAAAATTATTT-GAT-----AAT-GAACTCTATTT--------------------------------TT---------CC----------T-----TTTTATTACAGCTAGTACGAGTGCAGTCTGCGGAGGGCATCAAACGCATTGAGATCTCACC
droPer2 scaffold_3:3973091-3973355 - CCA--GCACCC--------------AGCAC--CCAGCCC---------------A-G---------CA---CAGAACACAGCTCTA-CGACATGGCCAGTGCTCCTCTGATGCTTGAGAACCTTCTATACAAAAAACGCAATTTGGTTTATGCCTTTGCCCGCCATCGTCTGTTTCTGTTATGCAAACAATCGGTTTG-GTTCCCCCTAAAAATCA--------------------------------------------AATTAAAATTATTT-GAT-----AAT-GAACTCTATTT--------------------------------TT---------CC----------T-----TTTTATTGCAGCTAGTACGAGTGCAGTCTGCGGAGGGCATCAAACGCATTGAGATCTCACC
droWil2 scf2_1100000004943:14600661-14600931 + CCTT----------------------ATAA--GCAGCAC---------------A-A---------ACAACA---------TCCAA-GATTATGGCCAGCGCTCCATTGCTGCTAGAGAACATCATTTACAAGAAGCGCAATTATGTATTTGCCTTTGTGCGCCATCGTCTCTTTGTGTTATGCAAACAATCGGTAGA-AATA------AATACAC-A--TAT-ACATATTTGTT----------------------------T--------AT---------------------------ATTTAATTGTAAATAACACTTAATAAATGTACATTT----TA----------TT--ATTTATTTCTCAGCTTGTACGCGTTCAATCTGCGGAGGGCATAAAACGTATTGAGATCTCGCC
droVir3 scaffold_12855:6855691-6855930 - dvi_4226 CAA-----------------------------------------------------G---------AA-------------GA--A-CAACATGGCCAGTGCACCGCTGCTGCTCGAGCAATTCATCTATAGGAAGCGCAATTTTGTTTATGCCTTTGTGCGCCATCGTCTCTTTACGTTATGTAAACAATCGGTGTG-ATCG------CGCATTATTT---G-ATT---------------------------------------------TT---------------------------AATTAATTATAT----TAACTCA------TTCATTTCAAT---------ATATACTGATCGGTTCACAGCTAATACGCGTGCAGTCTGCGGAGGGCATCAAACGTATCGAAATCTCGCC
droMoj3 scaffold_6540:25757275-25757508 + AGA----------------------------------------------------------------------------------A-CACCATGGCCAGCGCTCCTTTGCTGCTCGAGCAATTCATCTACAAGAAACGAAATTTCGTTTATGCCTTTGTGCGGCATCGTCTCTTTACGTTATGTAAACAATCGGTGTG-ATCG------A---TG------------------------------------------------------------------------------CATTTCTCTATTAAATGTATGCAGCATCTAACCAG------CTTTCAA---------ATGTGCTGCTTGAATTACAGCTAATACGCGTGCAGTCTGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droGri2 scaffold_14906:2998699-2998963 - CAGC-------------------------------AACA---------------A-C---------CA---C---------ATTTG-CAACATGGCCTGCGCACCGCTGCTTCTGGAACAGTTTATATACAAGAAGCGCAATTTCGTGTATGCCTTTGTGCGCCATCGTCTTTTTGTGTTATGTAAACAATCGGTGTGCAATA------G---------------ATCATTATGCTATTCTACAA---------------AATTAAAATGAAAT-ATT-----AAT-T--TACTAATT--------------------------------TG---------CATTTTTAATAATTTTGATTTGATCGTAGCTAATACGTGTGCAGTCTGCAGAGGGCATCAAGCGCGTTGAGATCTCGCC
droAna3 scaffold_13340:3705170-3705430 - TCCCTGAACCG--------ATCC--CTTAA------CCC---------------C-C---------CA---AGACATCCACCCAAT-AGCCATGGCAAGTGCACCTTTGCTGCTCGAACACTTTATCTACAAGAAGCGCAATTTCGTCTACGCCTTTGTGCGCCATCGTTTATTTGTGTTATGCAAACAATCGGTGGG-GCTA------CCAATTACAA---T-ATC---------------------------------------------TCTAATCACAAAA-CTAATA---TTG--------------------------------TT---------AA----------TC---GACATTTTACAGCTTATACGCGTTCAGTCTGCGGAGGGCATCAAGCGCATCGAGATCTCGCC
droBip1 scf7180000396712:648264-648514 + TTA--------------------------A--CCCCTCCGC-----------CCA-A---------AA-----GAATACACCCAAT-AGTCATGGCAAGTGCACCTTTGCTGCTCGAACACTTCATCTACAAAAAGCGCAATTTCGTCTACGCCTTTGTGCGCCATCGTTTATTTGTGTTATGCAAACAATCGGTTGG-ACTA------CCAGTTGGAA---G-ATT---------------------------------------------TTTATTCACAAAA-CTAATA---TTT--------------------------------TT---------AA----------TC---CGCATTTTACAGCTAATACGCGTTCAGTCTGCGGAGGGCATCAAGCGCATCGAGATCTCGCC
droKik1 scf7180000302639:1587164-1587434 + CAC--ATCCCCCTTACCCAAACCCCACCGAATCCCATCC---------------A-G--------------------------------ACATGGCCTGTGCCCCGCTTCTGCTCGAGCAGTTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTTTGTTCGTGTTATGCAAACAGTCGGTTGT-AACG------GAACT-C-AATT-A-ATGCACCAGCC---------TTAGTTACCAATTACTAATTAT----------------------------ATAA--------------------------------TT---------CC----------TTCCGCTTTCCTTACAGCTAATTCGCGTTCAGTCTGCTGAGGGCATCAAACGCATTGAGATCTCGCC
droFic1 scf7180000454055:1365105-1365354 - CCA-----------------------GTGA--CCTGCCC---------------G-G---------AA---A---------ATCAA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCTTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------ACAATTC-AATT---ATCCAC-TGAC---------CA--------ATAACTAATTTA------------------------CACTATTT--------------------------------CT---------CG----------AT---TATTAATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATTGAGATCTCGCC
droEle1 scf7180000491280:3159789-3160039 - CCA-----------------------GTGA--CCTATCC---------------AAG---------AG---A---------ATCCA-GAAAATGGCCTGTGCACCTTTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCATTCGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTC-AATT---AATCAGTAT-C---------CA--------AATGCTAACTAA------------------------TATTAATT--------------------------------TG---------TA----------TT---ATTTAATTGCAGCTAATTCGCGTTCAGTCCGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droRho1 scf7180000779501:475040-475285 + CCA-----------------------GTGA--CCTATCC---------------G-G---------AA---A---------ATCCA-CAAAATGGCCTGTGCACCTTTGCTGCTCGAGCAGTTCATCTACAGGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTC-AATT---ATTCAGCAGCC---------TA--------GTTAATAAATAAT---------------------------GTTA--------------------------------CT---------TA----------T-----TATTATTACAGCTAATTCGCGTTCAGTCTGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droBia1 scf7180000302136:2296305-2296556 - CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAGTTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTCTTTGTGTTATGCAAACAATCGGTTGG-ACCA------AAAACTC-AATT---ATTCAGCTTCC---------GA--------AATACTAATTAAGGTTTTT-------------------CTATTA--------------------------------TT---------TA----------TTTTTATTATATTTCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droTak1 scf7180000415257:334119-334386 - CCAC----CCC--------------AGTGA--CCCGTCC---------------A-G---------AA---A---------GTCCAGTAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTGCG-ACCA------GAAATGC-ACTTAT-ATTCACCTGCC---------GA--------AATA--AATTAATATTTCTT-AAT-----AT-------TTAATA--------------------------------TT---------TA----------TT---CTTGCATTTCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droEug1 scf7180000409682:1181810-1182066 + CCAC-----CC--------------AGTGA--CCTGTCC---------------A-G---------AA---A---------GTCCA-CAAAATGGCCTGTGCACCACTGATGCTCGAGCAATTTATCTACAAGAAGCGCAATTTCGCTTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAACTGA-AATT---ATTCACCAGCC---------GA--------AATACTAATTAAT----------------AT----ATTTTATTT-------------------------------------------AA----------TT---ATTTAATTTCAGCTAATTCGCGTTCAGTCAGCGGAGGGCATCAAACGCATCGAGATCTCGCC
dm3 chr3R:21449078-21449322 - CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGTAAACAATCGGTTGG-ATCA------GAAATTGCCA---A-ATTCACCTGTC---------CT--------AGTACTAATTAGA----------------AT-------CTGTTA--------------------------------TT---------CA----------TT---TGTTAATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droSim2 3r:20960592-20960836 - dsi_5797 CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAACGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTGCCA---A-ATTTACCTGTC---------CT--------AGTACTAATTAGA----------------AT-------CTGGTA--------------------------------TT---------CA----------TT---TGTGTATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAGCGCATCGAGATCTCGCC
droSec2 scaffold_13:236026-236270 - CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTGTCA---A-ATTTACCTGTG---------CT--------AGTACTAATTAGA----------------AT-------CTGGTA--------------------------------TT---------CA----------TT---TGTGTATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAGCGCATCGAGATCTCGCC
droYak3 3R:25024954-25025221 + dya_1140 CC---------------------------------GTCCAAACACAAAAAAA--A-ACAAAAAAAAAA---A---------GTCCA-TAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTGCCA---GCATTCACCAGGC---------CC--------AATACTAATTGCA----------------AA-------CTGATA--------------------------------TC---------CA----------TTC--TGTGCATTCCAGTTGATACGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCC
droEre2 scaffold_4820:6592619-6592874 + der_960 CCA-----------------------GTGA--CCCGTCC---------------A-A---------AAAGAA---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------CATATTGCCA---CATTTCACCAGGC---------CC--------AGTACTAATTAGA----------------AT-------TTGGGT--------------------------------TT---------CA----------TT---TGTGCATTCCAGTTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCA--------------------------------GCCC---------------A-G---------CA---CAGAACACAGCTCTA-CGACATGGCCAGTGCTCCTCTGATGCTTGAGAACCTTCTATACAAAAAACGCAATTTGGTTTATGCCTTTGCCCGCCATCGTCTGTTTCTGTTATGCAAACAATCGGTTTG-GTTCCCCCTAAAAATCA--------------------------------------------AATTAAAATTATTT-GAT-----AAT-GAACTCTATTT--------------------------------TT---------CC----------T-----TTTTATTACAGCTAGTACGAGTGCAGTCTGCGGAGGGCATCAAACGCATTGAGATCTCACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCATCA...................2414.0040200011000
.........................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCATC....................2314.0040000013000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCATC....................2214.0040100003000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCA......................2012.0020100001000
.......................................................................CAGAACACAGCTCTA-CGAC.........................................................................................................................................................................................................................................................................................................................................1912.0020100010000
.......................................................................CAGAACACAGCTCTA-CGACA........................................................................................................................................................................................................................................................................................................................................2012.0020200000000
.....................................................................................................................................................................TCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2012.0020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCA......................1912.0020100001000
......................................................................................................................................AACGCAATTTGGTTTATGCC..........................................................................................................................................................................................................................................................................2012.0020200000000
.......................................................................................................CCTCTGATGCTTGAGAACC..........................................................................................................................................................................................................................................................................................................1912.0020101000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCA......................2112.0020200000000
................................................................................................................................................................CGCCATCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCA......................2211.0010000001000
..............................................................................................GCCAGTGCTCCTCTGATGCTT.................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................CC---------------A-G---------CA---CAGAACACAGCTCTA-CGA..........................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................CCGCCATCGTCTGTTTCTGTT................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................CTCTGATGCTTGAGAACCTTCT......................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................AAACGCAATTTGGTTTATGCCTTT.......................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................ATGGCCAGTGCTCCTCTGATGCTTGAGA.............................................................................................................................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGGCATCAAACGCATTGAGAT......2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGTGCAGTCTGCGGAGGGC.......................2511.0010000001000
........................................................G---------CA---CAGAACACAGCTCTA-CGACATG......................................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................................................................................................................................................................CGTCTGTTTCTGTTATGCAAACA.......................................................................................................................................................................................................................................2311.0010000000010
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGC.......................2411.0010100000000
...........................................................................ACACAGCTCTA-CGACATGGCC...................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................TTTGCCCGCCATCGTCTGTTTCTGTTAT..............................................................................................................................................................................................................................................2811.0010100000000
.................................................................................................................................................................GCCATCGTCTGTTTCTGTTATG.............................................................................................................................................................................................................................................2211.0010000010000
............................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCATCA...................2111.0010100000000
....................................................................................................................................................................ATCGTCTGTTTCTGTTATGCAAACAAT.....................................................................................................................................................................................................................................2711.0010000001000
.................................................................................................AGTGCTCCTCTGATGCTTG................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................TGCCTTTGCCCGCCATCGTCTG........................................................................................................................................................................................................................................................2211.0010000001000
...............................................................................................................................................TGGTTTATGCCTTTGCCCGCCATCGTCT.........................................................................................................................................................................................................................................................2811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGCA......................2311.0010000001000
.................................................................................................AGTGCTCCTCTGATGCTTGAG..............................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................TGGCCAGTGCTCCTCTGAT.....................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGTGCAGTCTGCGGAGGGCA......................2611.0010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCATCAAACGCATTGAG........2211.0010100000000
............................................................................................................GATGCTTGAGAACCTTCTATA...................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................GCTTGAGAACCTTCTATACA.................................................................................................................................................................................................................................................................................................2011.0010000001000
..........................................................................................................CTGATGCTTGAGAACCTTC.......................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGCGGAGGGCATCAAACGCA.............2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGC.......................1811.0010100000000
.........................................................................................................TCTGATGCTTGAGAACCTTCT......................................................................................................................................................................................................................................................................................................2111.0010100000000
.CA--------------------------------GCCC---------------A-G---------CA---CAGAACACA....................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCATCAAAC................2511.0010000010000
............................................................................................................................................ATTTGGTTTATGCCTTTGCCCGC.................................................................................................................................................................................................................................................................2311.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGTGCAGTCTGCGGA...........................2111.0010000010000
........................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCATC....................2411.0010100000000
...............................................................................................................GCTTGAGAACCTTCTATACAAA...............................................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................CCGCCATCGTCTGTTTCTGTTATG.............................................................................................................................................................................................................................................2411.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGCATTGAGATCTCACC2211.0010100000000
..................................................................................................GTGCTCCTCTGATGCTTGA...............................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................GTGCTCCTCTGATGCTTGAG..............................................................................................................................................................................................................................................................................................................2011.0010000001000
........................................................................................................................................................CCTTTGCCCGCCATCGTCTGTT......................................................................................................................................................................................................................................................2211.0010000001000
.............................................................................................................................................................GCCCGCCATCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2811.0010100000000
..............................................................................................GCCAGTGCTCCTCTGATGCTTGAGAACC..........................................................................................................................................................................................................................................................................................................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCATCAAACGCA.............2711.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCAT.....................2111.0010000001000
........................................................................................................CTCTGATGCTTGAGAACCTTCTATA...................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCAT.....................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGGCATCAAACGCA.............1911.0010000010000
..................................................................................................GTGCTCCTCTGATGCTTGAGAACC..........................................................................................................................................................................................................................................................................................................2411.0010001000000
.....................................................................................................................................................................TCGTCTGTTTCTGTTATGCAAAC........................................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................TGCTTGAGAACCTTCTATACAAAA..............................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................CAGAACACAGCTCTA-CGACATGGCC...................................................................................................................................................................................................................................................................................................................................2511.0010001000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGCATC....................2711.0010000001000
..................................................................................................GTGCTCCTCTGATGCTTGAGAACCTTCT......................................................................................................................................................................................................................................................................................................2811.0010100000000
.............................................................................................GGCCAGTGCTCCTCTGATGCTTGAGAAC...........................................................................................................................................................................................................................................................................................................2811.0010100000000
................................................................................GCTCTA-CGACATGGCCAGTG...............................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................TCTGATGCTTGAGAACCTTCTATACAAA...............................................................................................................................................................................................................................................................................................2811.0011000000000
....................................................................................................................................................TATGCCTTTGCCCGCCATCGTCTG........................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................ATGGCCAGTGCTCCTCTGATGCTT.................................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................GCCCGCCATCGTCTGTTTCTGTTAT..............................................................................................................................................................................................................................................2511.0010000010000
.....................................................................................A-CGACATGGCCAGTGCTCCT..........................................................................................................................................................................................................................................................................................................................2011.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCATCA...................2511.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................TGCGGAGGGCATCAAACGCATTGAGA.......2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCATCA...................2311.0010100000000
.................................................................................................................................................................GCCATCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................AACGCAATTTGGTTTATGCCTTT.......................................................................................................................................................................................................................................................................2311.0010000001000
............................................................................................................................................................TGCCCGCCATCGTCTGTTTCTGTTA...............................................................................................................................................................................................................................................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................TAGTACGAGTGCAGTCTGCGG............................2111.0010100000000
...................................................................................................TGCTCCTCTGATGCTTGAGAAC...........................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................CCTCTGATGCTTGAGAACCT.........................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................TCGTCTGTTTCTGTTATGCAAACAATC....................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................................................................TTTGCCCGCCATCGTCTGTTTC....................................................................................................................................................................................................................................................2211.0010001000000
...............................................................................................................GCTTGAGAACCTTCTATAC..................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................TTTGCCCGCCATCGTCTGTTTCT...................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGAGGGCATCAAACG...............1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCTGCGGAGGGCATCAAACGC..............2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGC.......................2211.0010100000000
.......................................................................................CGACATGGCCAGTGCTCCTC.........................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGCATTGAGATCTC...1911.0010100000000
.......................................................................................................................................ACGCAATTTGGTTTATGCC..........................................................................................................................................................................................................................................................................1911.0010001000000
......................................C---------------A-G---------CA---CAGAACACAGCTCTA-CG...........................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................CTGATGCTTGAGAACCTTCTATA...................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................TGGCCAGTGCTCCTCTGATG....................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................GCCTTTGCCCGCCATCGTCTG........................................................................................................................................................................................................................................................2111.0010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGAGGGCATCAAACGCA.............2111.0010000001000
............................................................................................................................................ATTTGGTTTATGCCTTTGCCCGCCATCGT...........................................................................................................................................................................................................................................................2911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCAAACGCATTGA.........1811.0010100000000
.............................................................................................................................................................GCCCGCCATCGTCTGTTTCTGTC................................................................................................................................................................................................................................................2311.0010001000000
droPer2
CCA--GCACCC--------------AGCAC--CCAGCCC---------------A-G---------CA---CAGAACACAGCTCTA-CGACATGGCCAGTGCTCCTCTGATGCTTGAGAACCTTCTATACAAAAAACGCAATTTGGTTTATGCCTTTGCCCGCCATCGTCTGTTTCTGTTATGCAAACAATCGGTTTG-GTTCCCCCTAAAAATCA--------------------------------------------AATTAAAATTATTT-GAT-----AAT-GAACTCTATTT--------------------------------TT---------CC----------T-----TTTTATTGCAGCTAGTACGAGTGCAGTCTGCGGAGGGCATCAAACGCATTGAGATCTCACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCA......................2112.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCATCAA..................2512.002020000
.............................................................................................GGCCAGTGCTCCTCTGAT.....................................................................................................................................................................................................................................................................................................................1812.002020000
.........................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAGTCTGCGGAGGGCATC....................2312.002000002
........................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGCA......................2212.002000002
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGA...........................2012.002000002
............................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCAT.....................1911.001010000
.............................................................................................................................................................GCCCGCCATCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGCA......................2511.001000001
...............................................................................................................GCTTGAGAACCTTCTATACA.................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................TGGCCAGTGCTCCTCTGATGCTTGAGA.............................................................................................................................................................................................................................................................................................................2711.001010000
........................................................................AGAACACAGCTCTA-CGACA........................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAGTCTGCGGAGGGCATCAA..................2111.001010000
............................................................................................................GATGCTTGAGAACCTTCTATACA.................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................TCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2011.001010000
................................................................................GCTCTA-CGACATGGCCAGTGCTCCT..........................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGAGGGCATCAAA.................1911.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGCA......................2311.001010000
.....................................................................................................CTCCTCTGATGCTTGAGAACC..........................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGC.......................1911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGC.......................2211.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTCTGCGGAGGGCA......................2011.001010000
................................................................................................................................................................CGCCATCGTCTGTTTCTGTTATGCA...........................................................................................................................................................................................................................................2511.001010000
......................................................A-G---------CA---CAGAACACAGCTCTA-CGACA........................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGG.........................2211.001000001
............................................................................................................GATGCTTGAGAACCTTCTATACAAAA..............................................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGC.......................1811.001000001
....................................................................................................................................................................ATCGTCTGTTTCTGTTATGCAAACA.......................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCATC....................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................GCTAGTACGAGTGCAGTCT................................1911.001010000
............................................................................................................................................................TGCCCGCCATCGTCTGTTTCT...................................................................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGC.......................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGCAGTCTGCGGAGGGCATC....................2711.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGGCATC....................2511.001000001
......................................................................................................................................AACGCAATTTGGTTTATGCCT.........................................................................................................................................................................................................................................................................2111.001000100
............................................................................................TGGCCAGTGCTCCTCTGATGCTTGAG..............................................................................................................................................................................................................................................................................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCAGTCTGCGGAGGGC.......................2111.001000001
.......................................................................CAGAACACAGCTCTA-CGAC.........................................................................................................................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................CGCCATCGTCTGTTTCTGTTATG.............................................................................................................................................................................................................................................2311.001000001
................................................................................................................................................................CGCCATCGTCTGTTTCTGTT................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCATTGAGATCTCA..1911.001010000
...................................................................................................................GAGAACCTTCTATACAAA...............................................................................................................................................................................................................................................................................................1811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGAGGGCATCAAACGCATTGAG........2711.001010000
.........................................................................................................TCTGATGCTTGAGAACCTTCTATACAAAA..............................................................................................................................................................................................................................................................................................2911.001010000
.......................................................................CAGAACACAGCTCTA-CGACA........................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................CCCGCCATCGTCTGTTTCTGTT................................................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCATCAA..................2211.001000001
....................................................................................................................................................................ATCGTCTGTTTCTGTTATGCAAA.........................................................................................................................................................................................................................................2311.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCAGTCTGCGGAGGG........................2111.001010000
.......................................................................................................................................ACGCAATTTGGTTTATGCCT.........................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................GTTTATGCCTTTGCCCGCC................................................................................................................................................................................................................................................................1911.001010000
................................................................................................CAGTGCTCCTCTGATGCTTGAGAACC..........................................................................................................................................................................................................................................................................................................2611.001010000
droWil2
CCTT----------------------ATAA--GCAGCAC---------------A-A---------ACAACA---------TCCAA-GATTATGGCCAGCGCTCCATTGCTGCTAGAGAACATCATTTACAAGAAGCGCAATTATGTATTTGCCTTTGTGCGCCATCGTCTCTTTGTGTTATGCAAACAATCGGTAGA-AATA------AATACAC-A--TAT-ACATATTTGTT----------------------------T--------AT---------------------------ATTTAATTGTAAATAACACTTAATAAATGTACATTT----TA----------TT--ATTTATTTCTCAGCTTGTACGCGTTCAATCTGCGGAGGGCATAAAACGTATTGAGATCTCGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................AACGTATTGAGATCTCGCC1917.00761000
..............................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGTATTGAGATCTCGCC2215.00550000
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCTGCGGAGGGC.......................1814.00401030
................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTATTGAGATCTCGCC2014.00431000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAAACGTATTGAGATCTCGCC2112.00220000
...........................................................................................................................................................TTGTGCGCCATCGTCTCTTTGT...................................................................................................................................................................................................................................................2212.00210100
...........................................................................................................................................................TTGTGCGCCATCGTCTCT.......................................................................................................................................................................................................................................................1812.00200200
...............................................................................................................................................ATGTATTTGCCTTTGTGCGCCATCG............................................................................................................................................................................................................................................................2511.00101000
......................................................................................................................................................TGCCTTTGTGCGCCATCGTCTCTTTGT...................................................................................................................................................................................................................................................2711.00110000
.................................................................................................AGCGCTCCATTGCTGCTAGAGAACA..........................................................................................................................................................................................................................................................................................................2511.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCTGCGGAGGGCATA....................2111.00101000
................................................................................................................................................................CGCCATCGTCTCTTTGTGTTATGCA...........................................................................................................................................................................................................................................2511.00100100
........................................................................................................CATTGCTGCTAGAGAACATC........................................................................................................................................................................................................................................................................................................2011.00110000
............................................................................................................................................................TGTGCGCCATCGTCTCTTTGT...................................................................................................................................................................................................................................................2111.00110000
.....................................................................................A-GATTATGGCCAGCGCTCCA..........................................................................................................................................................................................................................................................................................................................2011.00100100
..........................................................................................................................................................TTTGTGCGCCATCGTCTCTTTGTGT.................................................................................................................................................................................................................................................2511.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACGTATTGAGATCTCGCC1811.00110000
..................................................................................................................AGAGAACATCATTTACAAGAAGCGCAAT......................................................................................................................................................................................................................................................................................2811.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................CAATCTGCGGAGGGCATAA...................1911.00100100
droVir3
CAA-----------------------------------------------------G---------AA-------------GA--A-CAACATGGCCAGTGCACCGCTGCTGCTCGAGCAATTCATCTATAGGAAGCGCAATTTTGTTTATGCCTTTGTGCGCCATCGTCTCTTTACGTTATGTAAACAATCGGTGTG-ATCG------CGCATTATTT---G-ATT---------------------------------------------TT---------------------------AATTAATTATAT----TAACTCA------TTCATTTCAAT---------ATATACTGATCGGTTCACAGCTAATACGCGTGCAGTCTGCGGAGGGCATCAAACGTATCGAAATCTCGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................AAGCGCAATTTTGTTTATGCC..........................................................................................................................................................................................................................................................................2112.002000000000000000000000010000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCTGCGGAGGGCATCA...................1812.002001000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................TAGGAAGCGCAATTTTGTTTATGCC..........................................................................................................................................................................................................................................................................2512.002002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TGCCTTTGTGCGCCATCGTCTC........................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATACGCGTGCAGTCTGCGG............................1911.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................GCCTTTGTGCGCCATCGTCTCT.......................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATGCCTTTGTGCGCCATCGTCTC........................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCATCTATAGGAAGCGCAATTTTGTTTA..............................................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCATC....................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................ATTCATCTATAGGAAGCGCAATTTTGTT................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TGTTTATGCCTTTGTGCGCCATC.............................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AATACGCGTGCAGTCTGCGGAGGGC.......................2511.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................CCTTTGTGCGCCATCGTCTCT.......................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGCGGAGGGCATCA...................2111.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTCTGCGGAGGGCA......................2011.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGTATCGAAATCTCGCC2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GTTTATGCCTTTGTGCGCCATCGTCT.........................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................GCACCGCTGCTGCTCGAGCA............................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.AA-----------------------------------------------------G---------AA-------------GA--A-CAACATGGCCAG.................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTGCAGTCTGCGGAGGGCATCC...................2611.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................TCTCTTTACGTTATGTAAACAATCG...................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTCATCTATAGGAAGCGCAAT......................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TGCCTTTGTGCGCCATCGTC..........................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................TCTATAGGAAGCGCAATTTTGTTTATGC...........................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTGCAGTCTGCGGAGGGCATCA...................2611.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................ATGCCTTTGTGCGCCATCGTCTCTT......................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGAGGGCATCAAACGTATCGA.........2711.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................TTACGTTATGTAAACAATCG...................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................ATATACTGATCGGTTCACAGCT................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................TTTGTTTATGCCTTTGTGCGCC................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATCGTCTCTTTACGTTATGTAAACAAT.....................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................G---------AA-------------GA--A-CAACATGGCCAGTGCAC............................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTGTTTATGCCTTTGTGCGCCATCGTCTG........................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCAAACGTATCGAA........1911.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................ATCTATAGGAAGCGCAATT.....................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................TTTGTGCGCCATCGTCTCTTTACGTT................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TACGCGTGCAGTCTGCGGAGGGC.......................2311.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TACGCGTGCAGTCTGCGGAGGGCATCA...................2711.001000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTGCAGTCTGCGGAGGGCATCA...................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GTCTCTTTACGTTATGTAAACAA......................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CGTCTCTTTACGTTATGTAAA.........................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTGCAGTCTGCGGAGGGCATCAA..................2711.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................TTCATCTATAGGAAGCGCA........................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.AA-----------------------------------------------------G---------AA-------------GA--A-CAACATGGCCAGT................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTGTTTATGCCTTTGTGCGCCATCGTC..........................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTGCAGTCTGCGGAGGGCAT.....................2411.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................TTATGCCTTTGTGCGCCATCGTCT.........................................................................................................................................................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................TTACGTTATGTAAACAATC....................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTGCACCGCTGCTGCTCGAGCAAT..........................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................ATGCCTTTGTGCGCCATCGT...........................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TAATACGCGTGCAGTCTGC..............................1911.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................TTTGTGCGCCATCGTCTCA.......................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCATCAAACGTATCGAAATCTCGC.2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TGTTTATGCCTTTGTGCGCCATCGTCTC........................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................GA--A-CAACATGGCCAGTGCAC............................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CCGCTGCTGCTCGAGCAATTCATC.....................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGCAATTCATCTATAGGAAGCG..........................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................ATTTTGTTTATGCCTTTGTGCGCCA...............................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................TCTTTACGTTATGTAAACAATCGC..................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.AA-----------------------------------------------------G---------AA-------------GA--A-CAACATGGCCAGTGCACCG..........................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TACGCGTGCAGTCTGCGGA...........................1911.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AATACGCGTGCAGTCTGCGGAGGGCA......................2611.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................TGTTTATGCCTTTGTGCGCC................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AACGTATCGAAATCTCGCC1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AATTCATCTATAGGAAGCGCAAT......................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGAGGGCATCAAAC................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGTGCGCCATCGTCTCTTTAC...................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGGCATCAAACGTATCG..........2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CTTTGTGCGCCATCGTCTCT.......................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AATTCATCTATAGGAAGCGCAATTTT...................................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................TGTTTATGCCTTTGTGCGCCATCGTCT.........................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGAGGGCATCAAA.................1820.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGA----------------------------------------------------------------------------------A-CACCATGGCCAGCGCTCCTTTGCTGCTCGAGCAATTCATCTACAAGAAACGAAATTTCGTTTATGCCTTTGTGCGGCATCGTCTCTTTACGTTATGTAAACAATCGGTGTG-ATCG------A---TG------------------------------------------------------------------------------CATTTCTCTATTAAATGTATGCAGCATCTAACCAG------CTTTCAA---------ATGTGCTGCTTGAATTACAGCTAATACGCGTGCAGTCTGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGAGGGCATCAAACGCATCG..........2612.002000002
..............................................................................................................................................TTCGTTTATGCCTTTGTGCGGCA...............................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................TCGTCTCTTTACGTTATGTAAACA.......................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTCTGCGGAGGGCATCAA..................2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTGCAGTCTGCGGAGGGC.......................2011.001000001
.........................................................................................CCATGGCCAGCGCTCCTTTGCTGCTC.................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
CAGC-------------------------------AACA---------------A-C---------CA---C---------ATTTG-CAACATGGCCTGCGCACCGCTGCTTCTGGAACAGTTTATATACAAGAAGCGCAATTTCGTGTATGCCTTTGTGCGCCATCGTCTTTTTGTGTTATGTAAACAATCGGTGTGCAATA------G---------------ATCATTATGCTATTCTACAA---------------AATTAAAATGAAAT-ATT-----AAT-T--TACTAATT--------------------------------TG---------CATTTTTAATAATTTTGATTTGATCGTAGCTAATACGTGTGCAGTCTGCAGAGGGCATCAAGCGCGTTGAGATCTCGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TCCCTGAACCG--------ATCC--CTTAA------CCC---------------C-C---------CA---AGACATCCACCCAAT-AGCCATGGCAAGTGCACCTTTGCTGCTCGAACACTTTATCTACAAGAAGCGCAATTTCGTCTACGCCTTTGTGCGCCATCGTTTATTTGTGTTATGCAAACAATCGGTGGG-GCTA------CCAATTACAA---T-ATC---------------------------------------------TCTAATCACAAAA-CTAATA---TTG--------------------------------TT---------AA----------TC---GACATTTTACAGCTTATACGCGTTCAGTCTGCGGAGGGCATCAAGCGCATCGAGATCTCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................CCTTTGTGCGCCATCGTTTA........................................................................................................................................................................................................................................................2013.003300000
................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGAGGGCATCAAGC................2012.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGTCTGCGGAGGGC.......................2011.001000010
.................................................................................................AGTGCACCTTTGCTGCTCGAACACT..........................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................AGCCATGGCAAGTGCACCTT.........................................................................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCGCATCGAGATCT....1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCAGTCTGCGGAGGGCATC....................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTTCAGTCTGCGGAGG.........................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCATCAAGCGCATCG..........2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTTCAGTCTGCGGAGGGCA......................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGGCATCAAGCGCATCGAGATC.....2611.001100000
..................................................................................................GTGCACCTTTGCTGCTCGAACAC...........................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................A---AGACATCCACCCAAT-AGCCATGG.....................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................ATCCACCCAAT-AGCCATGGCAAG.................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................TGCACCTTTGCTGCTCGAACAC...........................................................................................................................................................................................................................................................................................................2211.001000010
....................................................................................................................................................................................................................................................................................................................................................................................TATACGCGTTCAGTCTGCGGAGGGCATC....................2811.001000010
................................................................................................................................................CGTCTACGCCTTTGTGCGCCA...............................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGAGGGCATCAAGCGCATC...........2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCATCAAGCGCATCGA.........2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGGCATCAAGCGCATCGA.........2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................TGCGGAGGGCATCAAGCGCATCGAGA.......2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCTGCGGAGGGCATCAAGCGCA.............2411.001100000
........................................................................GACATCCACCCAAT-AGCCATGGC....................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................TGCGGAGGGCATCAAGCGCATC...........2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAGTCTGCGGAGGGCATCAAGCGCATC...........2811.001010000
....................................................................................................................................................................ATCGTTTATTTGTGTTATGCAAACA.......................................................................................................................................................................................................................................2511.001000001
.................................................................................................................................................................................................................................................................................................................................................................................GCTTATACGCGTTCAGTCTGCG.............................2211.001000001
............................................................................................................................ATCTACAAGAAGCGCAATTTC...................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCAAGCGCATCGAGATCTCGCC2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................TACGCGTTCAGTCTGCGGAGGGCATC....................2611.001000001
droBip1
TTA--------------------------A--CCCCTCCGC-----------CCA-A---------AA-----GAATACACCCAAT-AGTCATGGCAAGTGCACCTTTGCTGCTCGAACACTTCATCTACAAAAAGCGCAATTTCGTCTACGCCTTTGTGCGCCATCGTTTATTTGTGTTATGCAAACAATCGGTTGG-ACTA------CCAGTTGGAA---G-ATT---------------------------------------------TTTATTCACAAAA-CTAATA---TTT--------------------------------TT---------AA----------TC---CGCATTTTACAGCTAATACGCGTTCAGTCTGCGGAGGGCATCAAGCGCATCGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
CAC--ATCCCCCTTACCCAAACCCCACCGAATCCCATCC---------------A-G--------------------------------ACATGGCCTGTGCCCCGCTTCTGCTCGAGCAGTTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTTTGTTCGTGTTATGCAAACAGTCGGTTGT-AACG------GAACT-C-AATT-A-ATGCACCAGCC---------TTAGTTACCAATTACTAATTAT----------------------------ATAA--------------------------------TT---------CC----------TTCCGCTTTCCTTACAGCTAATTCGCGTTCAGTCTGCTGAGGGCATCAAACGCATTGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droFic1
CCA-----------------------GTGA--CCTGCCC---------------G-G---------AA---A---------ATCAA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCTTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------ACAATTC-AATT---ATCCAC-TGAC---------CA--------ATAACTAATTTA------------------------CACTATTT--------------------------------CT---------CG----------AT---TATTAATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATTGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droEle1
CCA-----------------------GTGA--CCTATCC---------------AAG---------AG---A---------ATCCA-GAAAATGGCCTGTGCACCTTTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCATTCGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTC-AATT---AATCAGTAT-C---------CA--------AATGCTAACTAA------------------------TATTAATT--------------------------------TG---------TA----------TT---ATTTAATTGCAGCTAATTCGCGTTCAGTCCGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droRho1
CCA-----------------------GTGA--CCTATCC---------------G-G---------AA---A---------ATCCA-CAAAATGGCCTGTGCACCTTTGCTGCTCGAGCAGTTCATCTACAGGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTC-AATT---ATTCAGCAGCC---------TA--------GTTAATAAATAAT---------------------------GTTA--------------------------------CT---------TA----------T-----TATTATTACAGCTAATTCGCGTTCAGTCTGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droBia1
CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAGTTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTCTTTGTGTTATGCAAACAATCGGTTGG-ACCA------AAAACTC-AATT---ATTCAGCTTCC---------GA--------AATACTAATTAAGGTTTTT-------------------CTATTA--------------------------------TT---------TA----------TTTTTATTATATTTCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droTak1
CCAC----CCC--------------AGTGA--CCCGTCC---------------A-G---------AA---A---------GTCCAGTAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTGCG-ACCA------GAAATGC-ACTTAT-ATTCACCTGCC---------GA--------AATA--AATTAATATTTCTT-AAT-----AT-------TTAATA--------------------------------TT---------TA----------TT---CTTGCATTTCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
droEug1
CCAC-----CC--------------AGTGA--CCTGTCC---------------A-G---------AA---A---------GTCCA-CAAAATGGCCTGTGCACCACTGATGCTCGAGCAATTTATCTACAAGAAGCGCAATTTCGCTTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAACTGA-AATT---ATTCACCAGCC---------GA--------AATACTAATTAAT----------------AT----ATTTTATTT-------------------------------------------AA----------TT---ATTTAATTTCAGCTAATTCGCGTTCAGTCAGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotal
No Reads
dm3
CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGTAAACAATCGGTTGG-ATCA------GAAATTGCCA---A-ATTCACCTGTC---------CT--------AGTACTAATTAGA----------------AT-------CTGTTA--------------------------------TT---------CA----------TT---TGTTAATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..........................................................................................................................................................TTTGTGCGCCATCGTCTGTTTT....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATCTACAAGAAGCGCAATTT....................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................TCATCTACAAGAAGCGCAATT.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAGGGCATCAAACG...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATCTACAAGAAGCGCAATTTC...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................TACAAGAAGCGCAATTTC...................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................AAGCGCAATTTCGCCTACGCC..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CAAGAAGCGCAATTTCGCCT...............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................TTTGTGCGCCATCGTCTGT.......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................TGTGCACCACTGCTGCTCG................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAGGGCATCAAACGCATCGAG........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CAAGAAGCGCAATTTCGCCTA..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCAGTCGGCGGAGGGT.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTCAGTCGGCGG............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TGTGCACCACTGCTGCTCGA...............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTCGCCTACGCCTTTGTGCGCC................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCATCGAGATCTCG..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CTGCTGCTCGAGCAATTCATCTACAAGA..............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ATTCATCTACAAGAAGCGCAATTT....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................GTTTGTGTTATGTAAACA.......................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTCAGTCGGCGGA...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TCTACAAGAAGCGCAATTTCGCCTA..............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATTTCGCCTACGCCTTTGTGCGCCATC.............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AATTCGCGTTCAGTCGGCGGAGGGCATCA...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GGCCTGTGCACCACTGCTGCTC.................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CGCAATTTCGCCTACGCC..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGCATCAAA.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................ATTCATCTACAAGAAGCGCA........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGTGCGCCATCGTCTGTTTGTGTTA...............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTCAGTCGGCGGAGGGCATCA...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTTGTGCGCCATCGTCTGTTT.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................A---------GTCCA-GAAAATGGCCTG.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTCGCCTACGCCTTTGTGCGCCATC.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GCCATCGTCTGTTTGTGTTATGT............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATCGAGATCTCGCC1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................................CTGTGCACCACTGCTGCTCGAGCA............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AAGCGCAATTTCGCCTACGCCTTT.......................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGTGCGCCATCGTCTGTT......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATTCGCGTTCAGTCGGCGGAGGGCA......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGGCGGAGGGCATCAAACGCT.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CGAGCAATTCATCTACAAGA..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AGCGCAATTTCGCCTACGCC..........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CTACAAGAAGCGCAATTTCGCCTACGCCT.........................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................GCTGCTCGAGCAATTCATCTAC..................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGTCGGCGGAGGGCG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TGGCCTGTGCACCACTGCTGCT..................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TCGCCTACGCCTTTGTGCGCCA...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCGGCGGAGGGCATCAC..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATTCGCGTTCAGTCGGCGGAGGGCATA....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CTGTGCACCACTGCTGCTCG................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AGAAGCGCAATTTCGCCTAC.............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CTAATTCGCGTTCAGTCGGCGGAGGGC.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGAGGGCATCAAACG...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TCCA-GAAAATGGCCTGTGCACC...........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGGCGGAGGGCATCATC.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCGTCTGTTTGTGTTATGT............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTCAGTCGGCGGAGGATC......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAACGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTGCCA---A-ATTTACCTGTC---------CT--------AGTACTAATTAGA----------------AT-------CTGGTA--------------------------------TT---------CA----------TT---TGTGTATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAGCGCATCGAGATCTCGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................T-------CTGGTA--------------------------------TT---------CA----------TT---TGTGTATTCCA...................................................2412.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AATTCGCGTTCAGTCGGCG.............................1912.00211000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCTAATTCGCGTTCAGTCGGC..............................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGTCGGCGGAGGGCATCAAG.................2611.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCAGTCGGCGGAGGGCATC....................2511.00101000000000000000
...............................................................................................................................................TCGCCTACGCCTTTGTGCGCC................................................................................................................................................................................................................................................................2111.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAGGGCATCAAGCGCATC...........2511.00110000000000000000
..............................................................................................................................................TTCGCCTACGCCTTTGTGCGCCATCGG...........................................................................................................................................................................................................................................................2711.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGTCGGCGGAGGGCATC....................2311.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCTAATTCGCGTTCAGTCGGCGGAGG.........................2611.00101000000000000000
.................................................................................................................................................................................GTTATGCAAACAATCGGTTGG-AC...........................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGCATCA...................2311.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCGCATCGAGATCTCGCC2211.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGCATCAAG.................2511.00101000000000000000
droSec2
CCC--------------------------------GTCC---------------A-G---------AA---A---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTGTCA---A-ATTTACCTGTG---------CT--------AGTACTAATTAGA----------------AT-------CTGGTA--------------------------------TT---------CA----------TT---TGTGTATTCCAGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAGCGCATCGAGATCTCGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................ATGGCCTGTGCACCACTGCTGCT..................................................................................................................................................................................................................................................................................................................2312.0022000
....................................................................................................................................................................ATCGTCTGTTTGTGTTATGCAAA.........................................................................................................................................................................................................................................2311.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCATCAAGCGCATCGAGAT......2211.0011000
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCAGTCGGCGGAGGGCATC....................2411.0011000
......................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTCAGTCGGCGGAGGGCATCA...................2711.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCAGTCGGCGGAGGGCA......................2311.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGGAGGGCATCAAGCGC..............2111.0010100
.................................................................................................................................................................GCCATCGTCTGTTTGTGTTATGC............................................................................................................................................................................................................................................2311.0011000
.................................................................................................................................................GCCTACGCCTTTGTGCGCCATCGTCTGT.......................................................................................................................................................................................................................................................2811.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGGCATCAAGCGCATCGAGATCT....2711.0011000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAGGGCATCAAGCGCA.............2311.0011000
....................................................................................................................................................................................................................................................................................................................................................................................AATTCGCGTTCAGTCGGCGGAGGGC.......................2511.0010100
.......................................................................................................................................................................GTCTGTTTGTGTTATGCAAACAAT.....................................................................................................................................................................................................................................2411.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGGCGGAGGGCATCA...................1811.0011000
..............................................................................................................................................................TGCGCCATCGTCTGTTTGT...................................................................................................................................................................................................................................................1911.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCGGCGGAGGGC.......................1811.0010100
...................................................................................................................................AGAAGCGCAATTTCGCCT...............................................................................................................................................................................................................................................................................1811.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................ATTCGCGTTCAGTCGGCGGAGGGCATC....................2711.0010100
...............................................................................................................................TACAAGAAGCGCAATTTCGCC................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGGCGGAGGGCATCAAGCGCATCG..........2711.0010100
.................................................................................................................................................................................................................................................................................................................................................................................GCTAATTCGCGTTCAGTCGGCGGAG..........................2511.0010100
.........................................................................................................................TTCATCTACAAGAAGCGCAATTT....................................................................................................................................................................................................................................................................................2311.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................ATTCGCGTTCAGTCGGCGGAGGGC.......................2411.0010100
..........................................................................................................................TCATCTACAAGAAGCGCAATT.....................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................CGCCTACGCCTTTGTGCGCCATC.............................................................................................................................................................................................................................................................2311.0011000
............................................................................................................................................ATTTCGCCTACGCCTTTGTGCGCC................................................................................................................................................................................................................................................................2411.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGGCGGAGGGCATCAAGC................2111.0010100
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCAGTCGGCGGAGGGCA......................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCAGTCGGCGGAGGGCATCA...................2611.0010100
.........................................................................................................ACTGCTGCTCGAGCAATTCATCTACA.................................................................................................................................................................................................................................................................................................2611.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGC.......................1911.0010001
droYak3
CC---------------------------------GTCCAAACACAAAAAAA--A-ACAAAAAAAAAA---A---------GTCCA-TAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------GAAATTGCCA---GCATTCACCAGGC---------CC--------AATACTAATTGCA----------------AA-------CTGATA--------------------------------TC---------CA----------TTC--TGTGCATTCCAGTTGATACGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................GTTGATACGCGTTCAGTCGGCG.............................2212.00200000020000
....................................................................................................................................................................ATCGTCTGTTTGTGTTATGC............................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGGCGGAGGGCATC....................1911.00100000010000
............................................................................................................................ATCTACAAGAAGCGCAATTTC...................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................ATCGTCTGTTTGTGTTATGCA...........................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................ATCTACAAGAAGCGCAATTTCGCCTAC.............................................................................................................................................................................................................................................................................2711.00100000010000
..................................................................................................................CGAGCAATTCATCTACAAGAAGC...........................................................................................................................................................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................TTGATACGCGTTCAGTCGGCGGAGGGCA......................2811.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................TTCAGTCGGCGGAGGGCATCAAACGCA.............2711.00101000000000
...............................................................................................................GCTCGAGCAATTCATCTACAAGAAGCG..........................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGTCGGCGGAGGGCA......................2111.00101000000000
.......................................................................................................................AATTCATCTACAAGAAGCGCAAT......................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................TCTACAAGAAGCGCAATTTCGCC................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................CGTCTGTTTGTGTTATGCAAACA.......................................................................................................................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAGGGCATCAAACGC..............2211.00100000100000
...................................................................................................................................AGAAGCGCAATTTCGCCTACGCCT.........................................................................................................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................GATACGCGTTCAGTCGGCGGAGGGCATCA...................2911.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................ACGCGTTCAGTCGGCGGAGGGC.......................2211.00100000010000
...........................................................................................................................................................TTGTGCGCCATCGTCTGTTTGT...................................................................................................................................................................................................................................................2211.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCGGCGGAGGGCATCAAACG...............2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................GTTGATACGCGTTCAGTCGGCGGAGGG........................2711.00100000010000
.....................................................................................................................................................................TCGTCTGTTTGTGTTATGCA...........................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................TCATCTACAAGAAGCGCAATTTC...................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGC.......................1911.00100000010000
........................................................................................................................ATTCATCTACAAGAAGCGCAATT.....................................................................................................................................................................................................................................................................................2311.00100000010000
........................................................................................................................ATTCATCTACAAGAAGCGCAA.......................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................GATACGCGTTCAGTCGGCGGAGG.........................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGTCGGCGGAGGGCATC....................2311.00100000010000
................................................................................................................................ACAAGAAGCGCAATTTCGCCTACGCCT.........................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................TCATCTACAAGAAGCGCAAT......................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................GTTGATACGCGTTCAGTCGGCGGAG..........................2511.00100000010000
.......................................................................................................................AATTCATCTACAAGAAGCGCAATT.....................................................................................................................................................................................................................................................................................2411.00100000010000
.............................................................................................................................TCTACAAGAAGCGCAATTTCGCCTA..............................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGGCGGAGGGCATCAAACGCA.............2611.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACGCATCGAGATCTC...2011.00101000000000
droEre2
CCA-----------------------GTGA--CCCGTCC---------------A-A---------AAAGAA---------GTCCA-GAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATGCAAACAATCGGTTGG-ACCA------CATATTGCCA---CATTTCACCAGGC---------CC--------AGTACTAATTAGA----------------AT-------TTGGGT--------------------------------TT---------CA----------TT---TGTGCATTCCAGTTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCGAGATCTCGTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................CTGTGCACCACTGCTGCTCG................................................................................................................................................................................................................................................................................................................2012.0022000000
........................................................................................................................ATTCATCTACAAGAAGCGCAAT......................................................................................................................................................................................................................................................................................2212.0020010100
...................................................................................................TGCACCACTGCTGCTCGAGCA............................................................................................................................................................................................................................................................................................................2112.0021000100
...............................................................................................................................................................GCGCCATCGTCTGTTTGTGTTA...............................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATCGAGATCTCGTT1911.0011000000
.......................................................................................................................................................................GTCTGTTTGTGTTATGCAAACAATCG...................................................................................................................................................................................................................................2611.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCAGTCGGCGGAGGGCATCA...................2611.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCAGTCGGCGGAGGGCATC....................2411.0011000000
....................................................................................................GCACCACTGCTGCTCGAGCAATTCA.......................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................TGCTCGAGCAATTCATCTAC..................................................................................................................................................................................................................................................................................................2011.0010000010
..........................................................................................AATGGCCTGTGCACCACTGC......................................................................................................................................................................................................................................................................................................................2011.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCAGTCGGCGGAGGGCATCAAA.................2711.0011000000
.............................................................................................................................................................................TTGTGTTATGCAAACAATCGG..................................................................................................................................................................................................................................2111.0011000000
....................................................................................................GCACCACTGCTGCTCGAGCA............................................................................................................................................................................................................................................................................................................2011.0011000000
.................................................................................................TGTGCACCACTGCTGCTCGAGC.............................................................................................................................................................................................................................................................................................................2211.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGGCGGAGGGCATCAAACGCA.............2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................TTCGCGTTCAGTCGGCGGAGGGC.......................2311.0011000000
...........................................................................................................................CATCTACAAGAAGCGCAATTT....................................................................................................................................................................................................................................................................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCAGTCGGCGGAGGGCATC....................2511.0011000000
......................................................................................................................................................CGCCTTTGTGCGCCATCGTCTG........................................................................................................................................................................................................................................................2211.0011000000
.............................................................................................................................TCTACAAGAAGCGCAATTTCGCCTAC.............................................................................................................................................................................................................................................................................2611.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCAGTCGGCGGAGGGCA......................2311.0011000000
...................................................................AAGAA---------GTCCA-GAAAATGGCC...................................................................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................ATGGCCTGTGCACCACTGCTGCTCG................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................................TACGCCTTTGTGCGCCATCGTCTGTT......................................................................................................................................................................................................................................................2611.0011000000
....................................................................AGAA---------GTCCA-GAAAATGGCCTGTGCA.............................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................................................ATCGTCTGTTTGTGTTATGCAAACA.......................................................................................................................................................................................................................................2511.0011000000
.......................................................................................................................AATTCATCTACAAGAAGCGC.........................................................................................................................................................................................................................................................................................2011.0010000010
..................................................................................................................................AAGAAGCGCAATTTCGCC................................................................................................................................................................................................................................................................................1811.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAGGGCATCAAACGCATCGA.........2711.0011000000
............................................................................................................................ATCTACAAGAAGCGCAATTT....................................................................................................................................................................................................................................................................................2011.0010000100
..................................................................................................................CGAGCAATTCATCTACAAGAA.............................................................................................................................................................................................................................................................................................2111.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAGGGCATCAAACGCATCGAGATC.....2811.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAGGGCATCAA..................1811.0011000000
...................................................................................................................................................................CATCGTCTGTTTGTGTTATGC............................................................................................................................................................................................................................................2111.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGCA......................2011.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCGGCGGAGGGCATCAAA.................2411.0011000000
........................................................................................................CACTGCTGCTCGAGCAATTC........................................................................................................................................................................................................................................................................................................2011.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAGTCGGCGGAGGGCATCAAACGCA.............2511.0011000000
...............................................................................................................................TACAAGAAGCGCAATTTCGCCTACGCCT.........................................................................................................................................................................................................................................................................2811.0010000100
...........................................................................................................TGCTGCTCGAGCAATTCATCTAC..................................................................................................................................................................................................................................................................................................2311.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAGGGCATCAAAC................2011.0010000100
.................................................................................................................................CAAGAAGCGCAATTTCGCCTACGCC..........................................................................................................................................................................................................................................................................2511.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGGCGGAGGGCATCAA..................1911.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGTCGGCGGAGGGCATCA...................2311.0011000000
....................................................................................................................................................................ATCGTCTGTTTGTGTTATGCA...........................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCAAACGCATCGAGATCTCG..2511.0010000100
.............................................................................................................................TCTACAAGAAGCGCAATTT....................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCGGCGGAGGGCATCA...................2211.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................TTCAGTCGGCGGAGGGCATCAAACG...............2511.0010000100
.............................................................................................................................TCTACAAGAAGCGCAATTTCGCC................................................................................................................................................................................................................................................................................2311.0011000000
....................................................................................................................................................................ATCGTCTGTTTGTGTTATGC............................................................................................................................................................................................................................................2011.0010000100
.......................................................................A---------GTCCA-GAAAATGGCCTGTGC..............................................................................................................................................................................................................................................................................................................................2111.0011000000
..................................................................................................GTGCACCACTGCTGCTCGAGCA............................................................................................................................................................................................................................................................................................................2211.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGGCGGAGGGCATCAC..................1920.5010000100

Generated: 05/17/2015 at 11:01 PM