ID:

dps_652

 Coordinate:

2:18668199-18668439 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -16.1 -16.1

Flybase annnotation

CDS [Dpse\GA16032-cds]; exon [Dpse\GA16032:13]; CDS [Dpse\GA16032-cds]; exon [Dpse\GA16032:12]; intron [Dpse\GA16032-in]

No Repeatable elements found

Sense Strand Reads

-------###########################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGAATAATGGCAAATAGCCAGCCCAGTTGTAATGATGTGATAGTGCCAGGTACGTTTAATCGAATACAATAAGTGTGTGCAAAAATATGGCTGCCCAGAGCCTCCCGCAGCCCCGGGAGAGGTGTGTGCTTTTGCGATGGGCTCGATGGCTGTGCATTCGCGATGCCTGGGCTGAATGGCCGCGAGTCGAATTGCAAGAACATCCATACGAAAAGTTGAAATTTTCGTATAATAATGCTATTTGGCCACCCAACTGTTGCACTTATTCTGTGGAATTGTTCTTCTTGCAGAGTTATACTTCCTCATATCGAAGTTCCTGACAGCGGGACCCCTGCATGAG
*********************************************************************************************************************************************(((((.((((....(((((((.........)).)))))))))))))).........************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 SRR902011
testis
 GSM444067
head
.............................................................................................................................................GCTCGATGGCTGTGCATTCGC................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................................TGGGCTCGATGGCTGTGCAT....................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................TGGCCGCGAGTCGAATTGCA................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.................................................................................................................................CTTTTGCGATGGGCTCGATG................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................TTCTGTGGAATTGTTCTTCTTT..................................................... 22 1 1 1.00 1 0 0 1 0
.......................................................................................................................................................................................................................................................................TTATTCTGTGGAATTGTTCTTCTTGC.................................................... 26 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................................ATCGAAGTTCCTGACAGCGGT............. 21 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................ATCCATACGAAAAGTTGAAATTT.................................................................................................................... 23 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................................................................................................................TATACTTCCTCATATCGAAGT.......................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................................................TTATTCTGTGGAATTGTTCTT......................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................AACATCCATACGAAAAGTTGA......................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................GATGCCTGGGCTGAATGGCC............................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................ATATCGAAGTTCCTGACAGC................ 20 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................ATGCCTGGGCTGAATGGCCG.............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................TGCATTCGCGATGCCTGGGT........................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 1
..............................................................................................................................................................................GAATTGCCGCGAGTCGGA..................................................................................................................................................... 18 2 5 0.40 2 2 0 0 0
.........................ATTTGTAATGCTGTGATAGTA....................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0
............................................................................TGTTAAAAACTATGGCTGCC..................................................................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0
......................................................................................................CTCACGCATCTCCGGGAGA............................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................AACATCGAAGTTACTGAC................... 18 3 20 0.05 1 1 0 0 0
.............................................................................................................................................................................AGAATTGCCGCGAGTCGGA..................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TACTTATTACCGTTTATCGGTCGGGTCAACATTACTACACTATCACGGTCCATGCAAATTAGCTTATGTTATTCACACACGTTTTTATACCGACGGGTCTCGGAGGGCGTCGGGGCCCTCTCCACACACGAAAACGCTACCCGAGCTACCGACACGTAAGCGCTACGGACCCGACTTACCGGCGCTCAGCTTAACGTTCTTGTAGGTATGCTTTTCAACTTTAAAAGCATATTATTACGATAAACCGGTGGGTTGACAACGTGAATAAGACACCTTAACAAGAAGAACGTCTCAATATGAAGGAGTATAGCTTCAAGGACTGTCGCCCTGGGGACGTACTC
************************************************************************************************************************************************(((((.((((....(((((((.........)).)))))))))))))).........********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M062
head
 GSM343916
embryo
....................................................................................................................................................................................GGCGCTGAGCCTAACGTTC.............................................................................................................................................. 19 2 1 7.00 7 7 0 0 0 0
..........CGTTTATCGGTCGGGTCAAC....................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0
..........AGTTTATCGGTCGGGTCAAC....................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
...........................................CACGGTCCATGCAAATTAGCT..................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...................GTCGGGTCAACATTACTACAC............................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TGACTGTCGCCCCGGGGACGT.... 21 2 1 1.00 1 1 0 0 0 0
..................GGTCGGGTCAACATTACTAC............................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................CGTTCTTGTAGGTATGCTT................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.................................................................................................TCTCGGAGGGCGTCGGGGCC................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................AAGAAGAACGTCTCAATATGA......................................... 21 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................................................................AAACCGGTGGGTTGACAACGTGA............................................................................. 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................CCGACGGGTCTCGGAGGGCGT....................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................AAGCGCTACGGACCCGACTTA................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
..........................................................................................GGACGGGTCTCGGACGGCGTC...................................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0
..........................................................................................GGACGGGTCTCGGACGGCGTCGT.................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0
.............................................................................................CGGGTCTCGGACGGCGTC...................................................................................................................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TTCAAGAACGGTCCCCCTGG.......... 20 3 7 0.14 1 1 0 0 0 0
.............................................................................................CGGGCCCTGGAGGGCGTCGGG................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................TCAAGAACGGTCCCCCTGG.......... 19 3 19 0.11 2 2 0 0 0 0
......................................................CCCATTAGCTTAGGTTATTC........................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0
..............................................................................................................................CACGAAAACGCCATCCTAG.................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1
............................................................................................................................................................................................................................................................TTGACAGCGTGAGTAAGAA...................................................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:18668149-18668489 - dps_652 ATGA--------ATAATGGCAAATAGCCAGCCCAGTTGTAATGATGTGATAGTGCCAGGTACGTTTAATCGAA----TACAATAAGTG--------------------------------TGTGCAAAAATA-----------TGG--C--TGCCCA---------------------GA----GC-------CTCCCGCAG----------CCC------CGGGAGAGGTGTGTGCT--TT-------TGCGATGGGCTCG-------------------------------------------------------------ATGGCTGTGC--ATTC------GCGATGCCTGGGCTGAATGGCCG-----CGAGTCGAATTG--CAAGAA-CATCC-ATACG---A--AA---AGTTGAAATTTTCGTATAAT--AATGCTATTT---GGCCACCCAACTGTTGCACTTAT-TCTGT--GG--AATTGTTCTTCTTGCAGAGTTATACTTCCTCATATCGAAGTTCCTGACAGCGGGACCCCTGCATGAG
droPer2 scaffold_3:1398326-1398666 - ATGA--------ATAATGGCAAATAGCCAGCCCAGTTGTAATGATGTGATAGTGCCAGGTACGTTTAATCGAA----TACAATAAGTG--------------------------------TGTGCAAAAATA-----------TGG--C--TGCCCA---------------------GA----GC-------CTCCCGCAG----------CCC------CGGGAGAGGTGTGTGCT--TT-------TGCGATGGGCTCG-------------------------------------------------------------ATGGCTGTGC--ATTC------GCGATGCCTGGGCTGAATGGCCG-----CGAGTCGAATTG--CAAGAA-CATCC-ATACG---A--AA---AGTTGAAATTTTCGTATAAT--AATGCTATTT---GGCCACCCAACTGTTGCACTTAT-TCTGT--GG--AATTGTTCTTCTTGCAGAGTTATACTTCCTCATATCGAAGTTCCTGACAGCGGGGCCCCTGCATGAG
droWil2 scf2_1100000004943:7154213-7154635 - ATGA--------ATAATGGAAAATAGGCCGAACAATTCGATTGATGTTATAGTGCCAGGTGTGTGTCCTAATC----TAAATGAATTGTGGGTGTTGTACCATCAAAATGGCTGCTAGTCCGC--AGAAGAA-----------GG--G--GCCT---TGGTACACATAGAGGCAG------CCAGCC-A-------G-CGAGCGCAAGA-GGAAAAGAGAGAGAGGAACGAATGTGTTGCTG---------CTGTTGCCTC---------TGTGTAAGACCCAGGCGC---------------------CGCTGCAATT-CGACTAGCTTTGCGATTTCCCACTGAAAAAAACTGCACCAAAAGGAGG-----AAAAGCGATTTG--CAACAT-AATGG-GTCAG---A--GG---GGGAGCATTTATTGTGTACA--AACTCTG----TTTTTTAACAACTTGTTGCACA------------------TTTCTA-TTTGCAGAATTGTACTTTCTGATATCCAAGTTTTTGACAGCAGGCCCGCTACAAGAC
droVir3 scaffold_13047:3475408-3475750 + dvi_15404 ATAAAATGTGTAATAATGGAAAACAGGCAGCCCAGTTTAAATGATGTGATAGTGCCAGGTGCGTTATATTGTCA-AAGGTTATGAATC--------------------------------TGC--ACAAATT-----------TGG--CGT--CC-AT--------------------T--------------TGGCCGTAG----------TCC---------AAGAGGTACG--------CTACCTCT--GGCTGGCTGGCTGGCCTCAGCCTTAGTGCCCTGGGC------CA--GTGAG----TG---------------------------------------------------------------------TAAAATCTGCGCGAAT-GGCCGACCCG---A--AA--TAAATGCAATTTTATGATAAT--TATGTGCATTT--GCCAAGCAACTTGTTGCATTTAT-TGTGT--ACCGCATTATTTCTATTTCAGAATTGTACTTCCTAATTTCCAAATTTCTTACTGCGGGGCCGCTGGAAGAG
droMoj3 scaffold_6540:20486650-20486988 + ATGT-----GTAATAATGGAAAACAGGCAGCCCAGTTTAAATGATGTGATAGTGCCAGGTGCGTTGTATTATCA-AACTTTGTGAATT--------------------------------TGC--ACAAATA-----------TGG--CGT--CT-AT--------------------T--------------TGACCCCAG----------CC----------AAGAGGTACG--------CTACCTCT--GGCTGGCTGGCTGGCCTCAGCCTCAGTGCCCTGGGC------CCGTGTGAG----TG---------------------------------------------------------------------CAGAATCTGCGCGAAT-GGCCGCATCG---A--AA--TAAATGCAATTTTATGATAAT--TATGCGCTTTT--AGCAAGCAACTTGTTGCATTTAA-TATAT--ACCCCATTGTTTCAATTGCAGAATTGTACTTCCTAATTTCGAAATTTCTGACTGCGGGGCCCCTGGAAGAG
droGri2 scaffold_14906:133983-134333 + ATAAAATGTGTAATAATGGAAAGCAGGAAGCCCAGTTCAAATGATGTGATAGTGCCAGGTGCGTTATATAGCCA-AACTAAATAGGTC--------------------------------TGC--ACAAACA-----------TGG--CGT--CC-AT--------------------T--------------TTACCCCAG----------CCA---------AAGAGGTACG--------CTACCTCC--AACTGGCTGGCTGGCCTCAGCCTCAGTGCCCTGGGCCTGGGCCCGTGTGAG----TG---------------------------------------------------------------------CAGAATCTGCGCGAAT-GGCCGAACCG---A--AA--TAAATACAATTTTATGATAAT--TATGTGAATTT--GGCAAGCAACTTGTTGCATTTAT-TGTGC--ACCGCTCTATTTCTATTGCAGAATTGTACTTTCTAATATCAAAATTTCTGACTGCGGGACCACTGGAAGAG
droAna3 scaffold_13088:183392-183712 + ATGA--------ATAATGGAAAATAGACAGTCTAGTGCCAGTGATGTGATAGTGCCAGGTGCGTACGTTGTGAT-GAC-CCGTAAATG--------------------------------TCT--GAAAATG----------T----CC--CA---------------------GC-CA-----GCCCA-------G-CGAGGTTGAGC---------------G--AAATGTGAGGC--TGCT-----------------------------------------------------------------GCCTTCTGTT-CGGTTTTCTGGGT--TCCG------TCGC---CT-------TT-----ACGGGCC--GTGAAATC--AGCTT-----CC-CCGTG---G--AA--T-ATTGCAATTTGGCGATT-TTC--TGCGATTCT---GCCAGCAACTTGTTGCACTCAT-TGTGT--GT--AATTTTGTTTCTTGCAGAGCTCTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAG
droBip1 scf7180000396413:237681-238000 + ATGA--------ATAATGGAAAATAGACAGTCAAGTGCCAGTGATGTGATAGTACCAGGTGCGTACTTAGTGAT-GAC-CCGTAAATG--------------------------------TCT--GAAAATG----------A----CC--CA---------------------G------CCAGCCGA---------CTAGGTTGAGC---------------G--AAATGTGAGGC--TGCT--------GCC----------------------------------------------------TACTGTTCG------GTTTTGTGGGT--TCCG------TCGC---C-------TTT-----ACGGGCC--GTGAAATC--TACTT-----CC-CCGTG---G--AA--T-ATTGCAATTTGGCGATT-TTC--TGCGATTCT---GCCAGCAACTTGTTGCACTCAT-TGTGT--GT--AATTCTGTTTCTTGCAGAGCTCTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAG
droKik1 scf7180000302387:34659-35001 + ATGA--------ATAATGGAAAATAGACAGTCCAGTGCCAGTGATGTGATAGTGCCAGGTGCGTACCGCCCCCGTGGCGTGTGTGGTG--------------------------------TGT--AAAAACGGGCCAAAT---TGGCG--ACC---------------------------CTCGGCCCT---------GCTGCCTGGCC---------------A--AAGTGTGTGTC--TG---------TGTCT-----------------------------------------------CGCTTCGCCTTCCGTT-CCGATGGCTGTGG-------------AGC---CAGCC--AGTT--------GGCC-CGTGAATTG--CACGGC-CC-----------CGGATTGAT-ATTGCATTTTGGCGACT-TCT--TATGCGTGT--GCCCAGCCACTTGTTGCACTCATG-GTGT--TGC-CTTTCGTTTCCTTTCAGAGCTCTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAG
droFic1 scf7180000453912:1319514-1319852 + ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGAGATAAAACCAGGTGCGTACAGCCCGGG-GTCGTAGCAAGTG--------------------------------TGT--GAAA----------TA-A----GC--CGT--------------------CG-AAAGGCAGCCCCTTTTGGCCCGCTG----------CTC------TC-G--AAATGTGTGTC--TG---------TGTTT---------------------------------------------------CGCCCTTCGAAT-CGAATGGCTGCGT--TTTTTTGT--TCGA---CTGCG---TTT--------GGCCGAGTGAA-TG--CACAG--CGCC---TTTGGCCAGATATAT-CC----------------------GCAGATATATTACCAGCAACTTGTTGCACTAAAACCCGTGTAA--AATTCCCTATCTTACAGAGCTGTACTTCCTCATCTCCAAGTTTCTGGCTGCGGGGCCTCTGGAGGAA
droEle1 scf7180000491008:457046-457396 + ATGA--------AAAATGGAAACTAGTCGGCCCAGTTCCGGTGATGAGATAAAGCCAGGTGCGTACCGTCCGGG-GGCGTGGCGAGTG--------------------------------TGT--GAAAACG----------G----GC--CT---------------------CG-AATCGCAGCCCC---------T-TGGCTTTCTG--C--------TC-G--AAGTGTGTGTC--TG---------TGTTT-----------------------------------------------C--TCGCCCTTCGAAT-AGAATGGCTGCGT--TTTT--------GG---CTGCG---TTT--------GGCCGTGTGAATTG--CACGGGTCCCC---TTTGGCCTGATATAT-TTTCCATATTGGCGACT-CCG--TGCGAGTCCGTTTCCAACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAA
droRho1 scf7180000779477:247950-248300 + ATGA--------ATAATGGAAACTAGACGGCCCAGTTCCGGTGATGAGATAAAGCCAGGTGCGTACCGCCCGGG-GGGATAGCAAGTG--------------------------------TGT--GAAAATG----------G----GC--CC---------------------CG-GATCGCAGCCCC---------TTTG-CTTTCTG--C--------TC-G--AAGTGTGTGTC--TG---------TGTTT-----------------------------------------------C--TCGCCCTTCGAAT-AGAATGGCTGCGT--TTTT--------GG---CTGCG---TTC--------GGCCGAGTGAATTG--CACGGGGCCCC---TTTGGCCTGATAAAT-TTTCCATATTGGCGACT-CCT--TGTGAGTCCGTTTACAACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATATTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAG
droBia1 scf7180000302136:506181-506530 + ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGCGATAAGGCCAGGTGCGTACCGCCCGAG-GGCGCCGCGGGCG--------------------------------TGC--CAAAGCA-----------GG--GC--CCC---------------------CGACAGGCAGCCCC---------C-TGACTTTGT---------------G--AAATGTGTGTC--TG---------TGCCT-----------------------------------------------C--TCGCCCTTCGCATACGAATGGCTGCGT--TTTT------TCGC---CTGCG---TTT--------GGCCAAGCGAACTG--CACGGG-CCCC---TTTTACAAGATATTT-ATGCCGTTTTGGCGACT-CCT--GGCGAGTGCGTTTCCAACAACTTGTTGCACTAAA-CCCGT--GA--ATCTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGAGGGGCCGCTGGAGGAG
droTak1 scf7180000415769:2287037-2287389 - ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGCGATTAGGCCAGGTGCGTACCGTCCCCG-GGCGCCGCTGGTG--------------------------------GCC--CAAA----------CG-AGC--G--CCCC---T----------------CG-TAGCGCAGCCCC---------CCTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGCCT-----------------------------------------------C--TCGCCCTTCGAATACGAATGGCTGCGT--TTTT------TCGC---CTGCG---TTT--------GGCCAAGCGAATTG--CACGGG-CCCC---TTTGGCCAGATATTT-GTGCCGTTCTGGCGACT-CCT--GGCGAGTGCGTTTCCAACTACTTGTTGCACTAAAACCCGT--GA--AATCCCCTTTCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGAGGGGCCGCTGGAGGAG
droEug1 scf7180000409798:235721-236071 - ATGA--------ATAATGGAAACTAGAAAGCCCAGTTCCGGTGATGAGATAAAGCCAGGTGCGTACTAGCCGGG-AACGTAACGAGTG--------------------------------TGC--AAAA----------CGGG----GC--TC---------------------AC-AAACGCAGCCCC---------ATAGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CTGTCGCCCTTCGAAT-GGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAATTG--CACGGG-CGCC---TTTGGCCAGATATAA-TTTCCATATTGGCGACT-CCT--TGCGAGTGCGTTTCCAACAACTTGTTGCACTAAAATATGT--GA--AATTCCATATCTTGCAGAGCTGTACTTCCTCATCTCCAAATTCCTGGCTGCGGGGCCTCTAGAGGAA
dm3 chr3R:20144830-20145180 + ATGA--------ATAATGGAAACTAGACAACCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTACCGCCCGGT-GGCGCAGCGAGTG--------------------------------CGT--CCAA----------CGGG----GC--TA---------------------CC-AAAGGCAGCCCC---------TTTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------CGCCAAGCGAAATT--CACGGG-CCCC---TTTGGCCAGATATAT-CTGGAATATTGACGACT-CCC--AGCGAGCGCATTTTCGACAACTTGTTGCACTAAAACCCGT--GA--AATCCTCTATCTTGCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAG
droSim2 3r:19677193-19677543 + dsi_18018 ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTAACGCCCGGT-GACGCAGCGAGTG--------------------------------CGC--CCAA----------CGGA----GC--CA---------------------CC-AAACGCAGCCCC---------TTTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTGGCCAGATATAT-CTGGCATATTGGCGACT-CCC--AGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAG
droSec2 scaffold_0:20483374-20483724 + dse_587 ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTAACGCCCGGT-GGCGCAGCGAGTG--------------------------------CGC--CCAA----------CGGA----GC--CA---------------------CC-AAACGCAGCCCC---------TTTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTGGCCAGATATAT-CTGGCATATTGGCGACT-CCC--AGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAG
droYak3 3R:26360513-26360863 - ATGA--------ATAATGGAAACTAGACGGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTACAGCCCGCT-GGCGTAGCGAGTG--------------------------------CCC--CCAT----------TGAA----GC--CC---------------------CC-AAACGAAGCCCC---------TTTGACTCTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTGGCCAGATATAT-TTGGCATATTGGCGACT-CCC--TGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAG
droEre2 scaffold_4820:7915555-7915905 - ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTACCGCCCGAT-GGCACAGCGAGTG--------------------------------CCC--CCAT----------TGGA----GC--CC---------------------CG-AAACGCAGCCCC---------TTTGACTCTGT---------------A--TAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGCCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTTGCCAGATATAT-TTGGCATATTGGGGACT-CCC--TGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATGA--------ATAATGGCAAATAGCCAGCCCAGTTGTAATGATGTGATAGTGCCAGGTACGTTTAATCGAA----TACAATAAGTG--------------------------------TGTGCAAAAATA-----------TGG--C--TGCCCA---------------------GA----GC-------CTCCCGCAG----------CCC------CGGGAGAGGTGTGTGCT--TT-------TGCGATGGGCTCG-------------------------------------------------------------ATGGCTGTGC--ATTC------GCGATGCCTGGGCTGAATGGCCG-----CGAGTCGAATTG--CAAGAA-CATCC-ATACG---A--AA---AGTTGAAATTTTCGTATAAT--AATGCTATTT---GGCCACCCAACTGTTGCACTTAT-TCTGT--GG--AATTGTTCTTCTTGCAGAGTTATACTTCCTCATATCGAAGTTCCTGACAGCGGGACCCCTGCATGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................GCTCG-------------------------------------------------------------ATGGCTGTGC--ATTC------GC..............................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................TGGGCTCG-------------------------------------------------------------ATGGCTGTGC--AT........................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................TGGCCG-----CGAGTCGAATTG--CA....................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................CT--TT-------TGCGATGGGCTCG-------------------------------------------------------------ATG...................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCTGT--GG--AATTGTTCTTCTTT.....................................................2211.0010000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT-TCTGT--GG--AATTGTTCTTCTTGC....................................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGTTCCTGACAGCGGT.............2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCC-ATACG---A--AA---AGTTGAAATTT..............................................................................................................................2311.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTTCCTCATATCGAAGT..........................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT-TCTGT--GG--AATTGTTCTT.........................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AA-CATCC-ATACG---A--AA---AGTTGA...................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................GATGCCTGGGCTGAATGGCC..........................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAAGTTCCTGACAGC................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................ATGCCTGGGCTGAATGGCCG-----....................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................TGC--ATTC------GCGATGCCTGGGT...................................................................................................................................................................................................2011.0010000010000
droPer2
ATGA--------ATAATGGCAAATAGCCAGCCCAGTTGTAATGATGTGATAGTGCCAGGTACGTTTAATCGAA----TACAATAAGTG--------------------------------TGTGCAAAAATA-----------TGG--C--TGCCCA---------------------GA----GC-------CTCCCGCAG----------CCC------CGGGAGAGGTGTGTGCT--TT-------TGCGATGGGCTCG-------------------------------------------------------------ATGGCTGTGC--ATTC------GCGATGCCTGGGCTGAATGGCCG-----CGAGTCGAATTG--CAAGAA-CATCC-ATACG---A--AA---AGTTGAAATTTTCGTATAAT--AATGCTATTT---GGCCACCCAACTGTTGCACTTAT-TCTGT--GG--AATTGTTCTTCTTGCAGAGTTATACTTCCTCATATCGAAGTTCCTGACAGCGGGGCCCCTGCATGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCAACTGTTGCACTT.................................................................................1812.002200000
.................................AGTTGTAATGATGTGATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..................................GTTGTAATGATGTGATAGTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droWil2
ATGA--------ATAATGGAAAATAGGCCGAACAATTCGATTGATGTTATAGTGCCAGGTGTGTGTCCTAATC----TAAATGAATTGTGGGTGTTGTACCATCAAAATGGCTGCTAGTCCGC--AGAAGAA-----------GG--G--GCCT---TGGTACACATAGAGGCAG------CCAGCC-A-------G-CGAGCGCAAGA-GGAAAAGAGAGAGAGGAACGAATGTGTTGCTG---------CTGTTGCCTC---------TGTGTAAGACCCAGGCGC---------------------CGCTGCAATT-CGACTAGCTTTGCGATTTCCCACTGAAAAAAACTGCACCAAAAGGAGG-----AAAAGCGATTTG--CAACAT-AATGG-GTCAG---A--GG---GGGAGCATTTATTGTGTACA--AACTCTG----TTTTTTAACAACTTGTTGCACA------------------TTTCTA-TTTGCAGAATTGTACTTTCTGATATCCAAGTTTTTGACAGCAGGCCCGCTACAAGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................CTG---------CTGTTGCCTC---------TGTGTAAG...................................................................................................................................................................................................................................................................................2113.00300003
...............................................................................................................................................................................................................................................CTG---------CTGTTGCCTC---------TGTGTAAGT..................................................................................................................................................................................................................................................................................2212.00201010
........................................................................................................................................................................................................................................................................................CCAGGCGC---------------------CGCTGCAATT-CGA......................................................................................................................................................................................................................................2112.00201001
.......................................................................TC----TAAATGAATTGTGGGTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200101
.................................................TAGTGCCAGGTGTGTGTCCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCAAGTTTTTGACAGCAG..............2111.00101000
...............ATGGAAAATAGGCCGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................GTTATAGTGCCAGGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................TGTGTCCTAATC----TAAATGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...............................................................................................................................................................................................................................................CTG---------CTGTTGCCTC---------TGTGTAA....................................................................................................................................................................................................................................................................................2011.00110000
............................................................................................................................................................................................................................................TTGCTG---------CTGTTGCCTC---------TGTGT......................................................................................................................................................................................................................................................................................2111.00100001
.............................................................................................................................................................................................................AAGA-GGAAAAGAGAGAGAGGA......................................................................................................................................................................................................................................................................................................................................2111.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TTTTTTAACAACTTGTTG......................................................................................2011.00101000
...................AAAATAGGCCGAACAATTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...........................................................................................................................................................................................................................................................................................................................................................AAAAACTGCACCAAAAGGAGG-----....................................................................................................................................................................................2111.00100010
................................................ATAGTGCCAGGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
................................................ATAGTGCCAGGTGTGTGTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
...............................................TATAGTGCCAGGTGTGTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAG---A--GG---GGGAGCATTTATTG...........................................................................................................................2111.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................CGATTTG--CAACAT-AATGG-GTC......................................................................................................................................................2111.00100010
............................................................................................................................................................................................................................................TTGCTG---------CTGTTGCCTC---------TGTGTAA....................................................................................................................................................................................................................................................................................2311.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGACAGCAGGCCCGCTAC.....2111.00100010
............................................................................................................................................................................................................................................TTGCTG---------CTGTTGCCTC---------TGTGTA.....................................................................................................................................................................................................................................................................................2211.00100001
..............................................TTATAGTGCCAGGTGTGTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
..............................................................................................................................................................................................................................................................TTGCCTC---------TGTGTAAGACCCAG.............................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................TTGCTG---------CTGTTGCCTC---------TGTGTAC....................................................................................................................................................................................................................................................................................2311.00100001
.............................................................................................................................................................TGGTACACATAGAGGCAG------CC..................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................................................................................................................................................................................................................................CTG---------CTGTTGCCTC---------TGTGTACCT..................................................................................................................................................................................................................................................................................2230.33100001
droVir3
ATAAAATGTGTAATAATGGAAAACAGGCAGCCCAGTTTAAATGATGTGATAGTGCCAGGTGCGTTATATTGTCA-AAGGTTATGAATC--------------------------------TGC--ACAAATT-----------TGG--CGT--CC-AT--------------------T--------------TGGCCGTAG----------TCC---------AAGAGGTACG--------CTACCTCT--GGCTGGCTGGCTGGCCTCAGCCTTAGTGCCCTGGGC------CA--GTGAG----TG---------------------------------------------------------------------TAAAATCTGCGCGAAT-GGCCGACCCG---A--AA--TAAATGCAATTTTATGATAAT--TATGTGCATTT--GCCAAGCAACTTGTTGCATTTAT-TGTGT--ACCGCATTATTTCTATTTCAGAATTGTACTTCCTAATTTCCAAATTTCTTACTGCGGGGCCGCTGGAAGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTACTGCGGGGCCGCTGGA....2111.001000000000000000000000000000010000000000000000000000000000000000
...........................................ATGTGATAGTGCCAGGTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGCGGGGCCGCTGGAAG..2111.001001000000000000000000000000000000000000000000000000000000000000
.......................CAGGCAGCCCAGTTTAAATGATGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................GAATC--------------------------------TGC--ACAAATT-----------TGG--CGT--................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCAGAATTGTACTTCCT.....................................2111.001000000000000000000000000000001000000000000000000000000000000000
......................ACAGGCAGCCCAGTTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................TGATGTGATAGTGCCAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATAAT--TATGTGCATTT--G.....................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................GGCTGGCTGGCTGGCCTCAGCCTTG....................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CA--GTGAG----TG---------------------------------------------------------------------TAAAATCTGC.....................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TCTGCGCGAAT-GGCCGACCC.....................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
.........GTAATAATGGAAAACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
................................................................................TATGAATC--------------------------------TGC--ACAAATT-----------TGG--.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGGGCCGCTGGAAGAA2111.001000000000010000000000000000000000000000000000000000000000000000
..................................GTTTAAATGATGTGATAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TCT--GGCTGGCTGGCTGGCCTC...........................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................TACCTCT--GGCTGGCTGGCTGG...............................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..........................................................GTGCGTTATATTGTCA-AAGGTTATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................C---------AAGAGGTACG--------CTACCTCT--GGCT.........................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
....................................................................TTGTCA-AAGGTTATGAATC--------------------------------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................AT--------------------T--------------TGGCCGTAG----------TCC---------AAGAGG...................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
ATGT-----GTAATAATGGAAAACAGGCAGCCCAGTTTAAATGATGTGATAGTGCCAGGTGCGTTGTATTATCA-AACTTTGTGAATT--------------------------------TGC--ACAAATA-----------TGG--CGT--CT-AT--------------------T--------------TGACCCCAG----------CC----------AAGAGGTACG--------CTACCTCT--GGCTGGCTGGCTGGCCTCAGCCTCAGTGCCCTGGGC------CCGTGTGAG----TG---------------------------------------------------------------------CAGAATCTGCGCGAAT-GGCCGCATCG---A--AA--TAAATGCAATTTTATGATAAT--TATGCGCTTTT--AGCAAGCAACTTGTTGCATTTAA-TATAT--ACCCCATTGTTTCAATTGCAGAATTGTACTTCCTAATTTCGAAATTTCTGACTGCGGGGCCCCTGGAAGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............ATAATGGAAAACAGGCAGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTGACTGCGGGGCCC.........2111.001000010
..................................................AGTGCCAGGTGCGTTGTATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................................................................GTGTGAG----TG---------------------------------------------------------------------CAGAATCTGCG....................................................................................................................................................................2011.001100000
....................AAACAGGCAGCCCAGTTTAAATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGACTGCGGGGCCCCTGGAAG..2611.001100000
droGri2
ATAAAATGTGTAATAATGGAAAGCAGGAAGCCCAGTTCAAATGATGTGATAGTGCCAGGTGCGTTATATAGCCA-AACTAAATAGGTC--------------------------------TGC--ACAAACA-----------TGG--CGT--CC-AT--------------------T--------------TTACCCCAG----------CCA---------AAGAGGTACG--------CTACCTCC--AACTGGCTGGCTGGCCTCAGCCTCAGTGCCCTGGGCCTGGGCCCGTGTGAG----TG---------------------------------------------------------------------CAGAATCTGCGCGAAT-GGCCGAACCG---A--AA--TAAATACAATTTTATGATAAT--TATGTGAATTT--GGCAAGCAACTTGTTGCATTTAT-TGTGC--ACCGCTCTATTTCTATTGCAGAATTGTACTTTCTAATATCAAAATTTCTGACTGCGGGACCACTGGAAGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................GTGCCCTGGGCCTGGGCCCGT...............................................................................................................................................................................................................................................................2112.00220
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCTGACTGCGGGACT..........1911.00110
............................................TGTGATAGTGCCAGGTGCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
............................................................................................................................................................................................................................................................................TCAGCCTCAGTGCCCTGGGCC........................................................................................................................................................................................................................................................................2111.00110
.......................................AATGATGTGATAGTGCCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...................................................................................................................................................................................................................................................................................CAGTGCCCTGGGCCTGGGCCC.................................................................................................................................................................................................................................................................2111.00110
droAna3
ATGA--------ATAATGGAAAATAGACAGTCTAGTGCCAGTGATGTGATAGTGCCAGGTGCGTACGTTGTGAT-GAC-CCGTAAATG--------------------------------TCT--GAAAATG----------T----CC--CA---------------------GC-CA-----GCCCA-------G-CGAGGTTGAGC---------------G--AAATGTGAGGC--TGCT-----------------------------------------------------------------GCCTTCTGTT-CGGTTTTCTGGGT--TCCG------TCGC---CT-------TT-----ACGGGCC--GTGAAATC--AGCTT-----CC-CCGTG---G--AA--T-ATTGCAATTTGGCGATT-TTC--TGCGATTCT---GCCAGCAACTTGTTGCACTCAT-TGTGT--GT--AATTTTGTTTCTTGCAGAGCTCTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................CGTTGTGAT-GAC-CCGTAAATG--------------------------------TCT--GAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............ATAATGGAAAATAGACAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GCCAGCAACTTGTTGCACTC.................................................................................2111.001100000
..........................................................GTGCGTACGTTGTGAT-GAC-CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................GGC--TGCT-----------------------------------------------------------------GCCTTCTGTT-CGG......................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................TT-CGGTTTTCTGGGT--TCCG------TC..............................................................................................................................................................................................................2111.001000010
droBip1
ATGA--------ATAATGGAAAATAGACAGTCAAGTGCCAGTGATGTGATAGTACCAGGTGCGTACTTAGTGAT-GAC-CCGTAAATG--------------------------------TCT--GAAAATG----------A----CC--CA---------------------G------CCAGCCGA---------CTAGGTTGAGC---------------G--AAATGTGAGGC--TGCT--------GCC----------------------------------------------------TACTGTTCG------GTTTTGTGGGT--TCCG------TCGC---C-------TTT-----ACGGGCC--GTGAAATC--TACTT-----CC-CCGTG---G--AA--T-ATTGCAATTTGGCGATT-TTC--TGCGATTCT---GCCAGCAACTTGTTGCACTCAT-TGTGT--GT--AATTCTGTTTCTTGCAGAGCTCTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
ATGA--------ATAATGGAAAATAGACAGTCCAGTGCCAGTGATGTGATAGTGCCAGGTGCGTACCGCCCCCGTGGCGTGTGTGGTG--------------------------------TGT--AAAAACGGGCCAAAT---TGGCG--ACC---------------------------CTCGGCCCT---------GCTGCCTGGCC---------------A--AAGTGTGTGTC--TG---------TGTCT-----------------------------------------------CGCTTCGCCTTCCGTT-CCGATGGCTGTGG-------------AGC---CAGCC--AGTT--------GGCC-CGTGAATTG--CACGGC-CC-----------CGGATTGAT-ATTGCATTTTGGCGACT-TCT--TATGCGTGT--GCCCAGCCACTTGTTGCACTCATG-GTGT--TGC-CTTTCGTTTCCTTTCAGAGCTCTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAGSizeHit CountTotal NormTotal
No Reads
droFic1
ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGAGATAAAACCAGGTGCGTACAGCCCGGG-GTCGTAGCAAGTG--------------------------------TGT--GAAA----------TA-A----GC--CGT--------------------CG-AAAGGCAGCCCCTTTTGGCCCGCTG----------CTC------TC-G--AAATGTGTGTC--TG---------TGTTT---------------------------------------------------CGCCCTTCGAAT-CGAATGGCTGCGT--TTTTTTGT--TCGA---CTGCG---TTT--------GGCCGAGTGAA-TG--CACAG--CGCC---TTTGGCCAGATATAT-CC----------------------GCAGATATATTACCAGCAACTTGTTGCACTAAAACCCGTGTAA--AATTCCCTATCTTACAGAGCTGTACTTCCTCATCTCCAAGTTTCTGGCTGCGGGGCCTCTGGAGGAASizeHit CountTotal NormTotal
No Reads
droEle1
ATGA--------AAAATGGAAACTAGTCGGCCCAGTTCCGGTGATGAGATAAAGCCAGGTGCGTACCGTCCGGG-GGCGTGGCGAGTG--------------------------------TGT--GAAAACG----------G----GC--CT---------------------CG-AATCGCAGCCCC---------T-TGGCTTTCTG--C--------TC-G--AAGTGTGTGTC--TG---------TGTTT-----------------------------------------------C--TCGCCCTTCGAAT-AGAATGGCTGCGT--TTTT--------GG---CTGCG---TTT--------GGCCGTGTGAATTG--CACGGGTCCCC---TTTGGCCTGATATAT-TTTCCATATTGGCGACT-CCG--TGCGAGTCCGTTTCCAACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAASizeHit CountTotal NormTotal
No Reads
droRho1
ATGA--------ATAATGGAAACTAGACGGCCCAGTTCCGGTGATGAGATAAAGCCAGGTGCGTACCGCCCGGG-GGGATAGCAAGTG--------------------------------TGT--GAAAATG----------G----GC--CC---------------------CG-GATCGCAGCCCC---------TTTG-CTTTCTG--C--------TC-G--AAGTGTGTGTC--TG---------TGTTT-----------------------------------------------C--TCGCCCTTCGAAT-AGAATGGCTGCGT--TTTT--------GG---CTGCG---TTC--------GGCCGAGTGAATTG--CACGGGGCCCC---TTTGGCCTGATAAAT-TTTCCATATTGGCGACT-CCT--TGTGAGTCCGTTTACAACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATATTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCTGCGGGGCCGCTGGAGGAGSizeHit CountTotal NormTotal
No Reads
droBia1
ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGCGATAAGGCCAGGTGCGTACCGCCCGAG-GGCGCCGCGGGCG--------------------------------TGC--CAAAGCA-----------GG--GC--CCC---------------------CGACAGGCAGCCCC---------C-TGACTTTGT---------------G--AAATGTGTGTC--TG---------TGCCT-----------------------------------------------C--TCGCCCTTCGCATACGAATGGCTGCGT--TTTT------TCGC---CTGCG---TTT--------GGCCAAGCGAACTG--CACGGG-CCCC---TTTTACAAGATATTT-ATGCCGTTTTGGCGACT-CCT--GGCGAGTGCGTTTCCAACAACTTGTTGCACTAAA-CCCGT--GA--ATCTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGAGGGGCCGCTGGAGGAGSizeHit CountTotal NormTotal
No Reads
droTak1
ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGCGATTAGGCCAGGTGCGTACCGTCCCCG-GGCGCCGCTGGTG--------------------------------GCC--CAAA----------CG-AGC--G--CCCC---T----------------CG-TAGCGCAGCCCC---------CCTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGCCT-----------------------------------------------C--TCGCCCTTCGAATACGAATGGCTGCGT--TTTT------TCGC---CTGCG---TTT--------GGCCAAGCGAATTG--CACGGG-CCCC---TTTGGCCAGATATTT-GTGCCGTTCTGGCGACT-CCT--GGCGAGTGCGTTTCCAACTACTTGTTGCACTAAAACCCGT--GA--AATCCCCTTTCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGAGGGGCCGCTGGAGGAGSizeHit CountTotal NormTotal
No Reads
droEug1
ATGA--------ATAATGGAAACTAGAAAGCCCAGTTCCGGTGATGAGATAAAGCCAGGTGCGTACTAGCCGGG-AACGTAACGAGTG--------------------------------TGC--AAAA----------CGGG----GC--TC---------------------AC-AAACGCAGCCCC---------ATAGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CTGTCGCCCTTCGAAT-GGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAATTG--CACGGG-CGCC---TTTGGCCAGATATAA-TTTCCATATTGGCGACT-CCT--TGCGAGTGCGTTTCCAACAACTTGTTGCACTAAAATATGT--GA--AATTCCATATCTTGCAGAGCTGTACTTCCTCATCTCCAAATTCCTGGCTGCGGGGCCTCTAGAGGAASizeHit CountTotal NormTotal
No Reads
dm3
ATGA--------ATAATGGAAACTAGACAACCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTACCGCCCGGT-GGCGCAGCGAGTG--------------------------------CGT--CCAA----------CGGG----GC--TA---------------------CC-AAAGGCAGCCCC---------TTTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------CGCCAAGCGAAATT--CACGGG-CCCC---TTTGGCCAGATATAT-CTGGAATATTGACGACT-CCC--AGCGAGCGCATTTTCGACAACTTGTTGCACTAAAACCCGT--GA--AATCCTCTATCTTGCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.....................................................................................................................................................................................................................................ATGTGTGTC--TG---------TGTTT-----------------------------------------------CG........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................TTTGT---------------G--AAATGTGTGTC--TG---------TG............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CCCTTCGAAT-CGAATGGCT................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGCCGCGGGACCGC........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCCAAGTTCCTGGCCGCGG..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................ACCCAGTTCCGGTGATGATCTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CGCCCGGT-GGCGCAGCGAGTG--------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCCTCATTTCCAAGTTCCTG.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGTACTTCCTCATTTCCAAGTT.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................T-----------------------------------------------CGCTCGCCCTTCGAAT-CGAA.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGATGATCTAAAGCCAGGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AGTG--------------------------------CGT--CCAA----------CGGG----GC--TA---------------------CC-........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................CGGTGATGATCTAAAGCCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AT-CGAATGGCTGCGT--TTTT------T...............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ACCCAGTTCCGGTGATGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGACT-CCC--AGCGAGCGCATT.....................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................ATGATCTAAAGCCAGGTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTGT---------------G--AAATGTGTGTC--TG---------TGT...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...A--------ATAATGGAAACTAGACAACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGACGACT-CCC--AGCGAGCG.........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CGGT-GGCGCAGCGAGTG--------------------------------CGT--............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATCTTGCAGAGCTG.............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTTCCTGGCCGCGT..............1911.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTCCGGTGATGATCTAAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GA--AATCCTCTATCTTGCAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATAT-CTGGAATATTGACGACT-......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCGCGGGACCGCTGGAG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CCCTTCGAAT-CGAATGGC.................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTAACGCCCGGT-GACGCAGCGAGTG--------------------------------CGC--CCAA----------CGGA----GC--CA---------------------CC-AAACGCAGCCCC---------TTTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTGGCCAGATATAT-CTGGCATATTGGCGACT-CCC--AGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCTATCTTGCAGAGCTG.............................................2115.00550000000000000000
............................................................................................................................................................................................................................................................................................................................................T--TTTT------TCGA---CTGCG---TTT--------GGCC..................................................................................................................................................................................2114.00431000000000000000
..GA--------ATAATGGAAACTAGACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200002000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC--AGCGAGCGCGTTCCCGACAA.............................................................................................2312.00200000020000000000
..............................CCCAGTTCCGGTGATGATCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000011000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTATCTTGCAGAGCTG.............................................1812.00220000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................T-CTGGCATATTGGCGACT-CCC--.................................................................................................................2112.00220000000000000000
...........................................................................................................................................................................................................................................................................................................................................GT--TTTT------TCGA---CTGCG---TTT--------GGC...................................................................................................................................................................................2111.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTTT------TCGA---CTGCG---TTT--------GGCC..................................................................................................................................................................................2011.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGATATAT-CTGGCATATTGGC...........................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTT--------GGCCAAGCGAAATG--CACG..................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--GA--AATTCCCTATCTTGCA...................................................2111.00100000000010000000
...........................................................................................................................................CGGA----GC--CA---------------------CC-AAACGCAGC...............................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGACAACTTGTTGCACTAA................................................................................2311.00100010000000000000
....................................................................................................................................................................................................................................AATGTGTGTC--TG---------TGTTT-----------------------------------------------C.........................................................................................................................................................................................................................................................1811.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCAGAGCTGTACTTCCT.....................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................TTCGAAT-CGAATGGCTGCGT--T.........................................................................................................................................................................................................................2111.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGTTCCCGACAACT...........................................................................................1911.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................TGGCTGCGT--TTTT------TCGA---CTGC.....................................................................................................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAGCGAAATG--CACGGG-CC.............................................................................................................................................................1811.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................CCCTTCGAAT-CGAATGGCTGCG.............................................................................................................................................................................................................................2211.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................ATGGCTGCGT--TTTT------TCGA---CTGC.....................................................................................................................................................................................................2211.00110000000000000000
..............................CCCAGTTCCGGTGATGATCTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...............................................................................................................................................................................C-AAACGCAGCCCC---------TTTGACTT...........................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTGTTGCACTAAAACCC...........................................................................2111.00110000000000000000
droSec2
ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTAACGCCCGGT-GGCGCAGCGAGTG--------------------------------CGC--CCAA----------CGGA----GC--CA---------------------CC-AAACGCAGCCCC---------TTTGACTTTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTGGCCAGATATAT-CTGGCATATTGGCGACT-CCC--AGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGACT-CCC--AGCGAGCG.........................................................................................................2114.0040022
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAAGTTCCTGGCCGCGG..............2112.0022000
..............................................ATCTAAAGCCAGGTGCGTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCAGAGCTGTACTTCCT.....................................2111.0011000
...........................................................................................................................................................................................................................................................................................................................................................GA---CTGCG---TTT--------GGCCAAGC..............................................................................................................................................................................1811.0010010
................................................CTAAAGCCAGGTGCGTAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................AGCGAGTG--------------------------------CGC--CCAA----------CGGA----GC--C.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
........................................................................................................................................................................................................TGACTTTGT---------------G--AAATGTGTGTC--.........................................................................................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................AATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCT......................................................................................................................................................................................................................................................2111.0010100
.........................................TGATGATCTAAAGCCAGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............................................................................CAGCGAGTG--------------------------------CGC--CCAA----------CGGA----GT--..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...............................CCAGTTCCGGTGATGATCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................................................................................................................................TTT--------GGCCAAGCGAAATG--CACG..................................................................................................................................................................2111.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTCCAAGTTCCTGGCCGTT...............2311.0011000
.....................................................................................................................................................................................................................................................................................................................CCCTTCGAAT-CGAATGGCTGC..............................................................................................................................................................................................................................2111.0010001
........................................................................................................................................................................................................................................TGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCC..................................................................................................................................................................................................................................................2111.0011000
.................................................................................GCGAGTG--------------------------------CGC--CCAA----------CGGA----GC--C.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............ATAATGGAAACTAGACAGCCCAGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GA--AATTCCCTATCTTGCA...................................................2011.0011000
..............................................................GTAACGCCCGGT-GGCGCAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCCTATCTTGCAGAGC...............................................2011.0010001
.............................................................................................................................................................................................................TTGT---------------G--AAATGTGTGTC--TG---------TG............................................................................................................................................................................................................................................................................................................2011.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................T-CTGGCATATTGGCGACT-CCC--.................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AATTCCCTATCTTGCAGAGC...............................................2111.0010100
........................................................................................................................................................................................................................................................................................................................................TGCGT--TTTT------TCGA---CTGCG---TTT--------......................................................................................................................................................................................2111.0011000
droYak3
ATGA--------ATAATGGAAACTAGACGGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTACAGCCCGCT-GGCGTAGCGAGTG--------------------------------CCC--CCAT----------TGAA----GC--CC---------------------CC-AAACGAAGCCCC---------TTTGACTCTGT---------------G--AAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGGCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTGGCCAGATATAT-TTGGCATATTGGCGACT-CCC--TGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCCTGGCCGCGGGAC...........1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTACTTCCTCATCTCC..............................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCTGTACTTCCTCATC.................................2111.00101000000000
..GA--------ATAATGGAAACTAGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEre2
ATGA--------ATAATGGAAACTAGACAGCCCAGTTCCGGTGATGATCTAAAGCCAGGTGCGTACCGCCCGAT-GGCACAGCGAGTG--------------------------------CCC--CCAT----------TGGA----GC--CC---------------------CG-AAACGCAGCCCC---------TTTGACTCTGT---------------A--TAATGTGTGTC--TG---------TGTTT-----------------------------------------------CGCTCGCCCTTCGAAT-CGAATGCCTGCGT--TTTT------TCGA---CTGCG---TTT--------GGCCAAGCGAAATG--CACGGG-CCCC---TTTTGCCAGATATAT-TTGGCATATTGGGGACT-CCC--TGCGAGCGCGTTCCCGACAACTTGTTGCACTAAAACCCGT--GA--AATTCCCTATCTTGCAGAGCTGTACTTCCTCATCTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGTACTTCCTCATCTCCAA............................2411.0011000000
............ATAATGGAAACTAGACAGCCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTGTACTTCCTCATCTCCAAGTT.........................2811.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGGGGACT-CCC--TG...............................................................................................................1911.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGTACTTCCTCATCT................................2011.0010000100
..............................CCCAGTTCCGGTGATGATCTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010

Generated: 05/17/2015 at 10:55 PM