ID:

dps_648

 Coordinate:

2:18390682-18390832 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.2 -5.9 -5.9

Flybase annnotation

CDS [Dpse\GA30171-cds]; exon [Dpse\GA30171:5]; intron [Dpse\GA30171-in]

No Repeatable elements found

mature
  1. Unknown_group_39:100102-100122 +
  2. Unknown_group_108:18414-18434 +
  3. XL_group1e:1756035-1756055 -
  4. XL_group1e:4465619-4465639 -
  5. XL_group1e:4466650-4466670 +
  6. 4_group5:280598-280618 -
  7. 2:6620565-6620585 +
  8. dps_648  2:18390781-18390801 +
  9. 2:23080494-23080514 -
  10. 4_group3:6933831-6933851 +
  11. 4_group3:8327354-8327374 -
  12. 4_group3:8327745-8327765 -
  13. 4_group4:2655534-2655554 +
  14. Unknown_group_289:8238-8258 -
  15. Unknown_group_289:8756-8776 +
  16. XR_group6:6270511-6270531 -
  17. XL_group1a:7477301-7477321 +
star
  1. Unknown_group_39:100064-100084 +
  2. Unknown_group_108:18376-18396 +
  3. XL_group1e:1756061-1756081 -
  4. XL_group1e:4465657-4465677 -
  5. 3:3009153-3009173 -
  6. dps_648  2:18390743-18390763 +
  7. 2:23080532-23080552 -
  8. 4_group1:4916599-4916619 +
  9. 4_group3:6517726-6517746 -
  10. Unknown_group_473:1168-1188 +
  11. Unknown_group_289:8276-8296 -
  12. XR_group6:6270549-6270569 -
  13. Unknown_group_237:8015-8035 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAATTAATAAATAGCCTTTAAAAACGTGTTCTGGAAACCACAAACTTTCTTGCTATATTAATAATGAATCAATCTATGCAAAAAAATTATTTCATATAAATCGGTAAATTGGTTAAAAAGATATAGCGGTTTGATTTTTGAAAATTGTTGAACCTATTCAGTTGAGCGGCACTGCATATTATTCTTAACATATCGTTTCAGGAGCCAGTCTTTCAAAGAGGACGATGGAACTTGGAAAGGAAATGATGATG
***************************************************************************************************************..............((.(((((((...((((..............))))))))))).))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902012
CNS imaginal disc
 SRR902011
testis
 GSM444067
head
 M022
male body		 M059
embryo
 M062
head
 SRR902010
ovaries
.....................................................................................................................................................GAACCTATTCAGTTGAGCGGC................................................................................. 21 0 17 18.59 316 189 98 2 4 14 6 0 3 0
.......................................................................................................................................................................................................................AAGAGGACAGTGGAACT................... 17 2 20 7.40 148 0 0 148 0 0 0 0 0 0
......................................................................................................................................................AACCTATTCAGTTGAGCGGCA................................................................................ 21 0 17 2.71 46 34 7 0 2 1 1 0 0 1
................................................................................................................................................................................................................TCTTTCAAAGAGGACGATGGAACTTG................. 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCAGTTGAGCGG.................................................................................. 21 0 17 1.94 33 25 5 0 1 1 0 1 0 0
.........................................................................................................................................................CTATTCAGTTGAGCGGCACTG............................................................................. 21 0 20 1.45 29 23 0 0 0 1 5 0 0 0
...............................................................................................................................................................................................................................GACGAAACTTGGAAAGGAA......... 19 2 17 1.41 24 24 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTATTCAGTTGAGCGGCACT.............................................................................. 20 0 20 1.35 27 19 4 0 4 0 0 0 0 0
......................................................................................................................................................................................................................AAAGAGGACGATGGAACTTGGAAA............. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................TTCAGTTGAGCGGCACTGCA........................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................CCTATTCAGTTGAGCGGCACT.............................................................................. 21 0 18 0.94 17 11 5 0 0 1 0 0 0 0
.................................................................................................................................................TGTTGAACCTATTCAGTTGAG..................................................................................... 21 0 17 0.76 13 8 5 0 0 0 0 0 0 0
......................................................................................................................................................AACCTATTCAGTTGAGCGGC................................................................................. 20 0 17 0.76 13 12 0 0 0 0 1 0 0 0
........................................................................................................................................................CCTATTCAGTTGAGCGGCACTG............................................................................. 22 0 18 0.72 13 9 4 0 0 0 0 0 0 0
..................................................................................................................................................GTTGAACCTATTCAGTTGAGC.................................................................................... 21 0 17 0.65 11 8 2 0 1 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCGG.................................................................................. 20 0 17 0.59 10 7 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GACGAAACTTGGAAAGGAAA........ 20 2 17 0.59 10 10 0 0 0 0 0 0 0 0
.........................................AAACTTTCTTGCTGTATTAATAATGAATC..................................................................................................................................................................................... 29 1 2 0.50 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................TTTTGAAGGTTGTTGAACCTA............................................................................................... 21 2 12 0.50 6 0 0 0 5 1 0 0 0 0
.....................................................................................................................................................GAGCCTATTCAGTTGAGCGGC................................................................................. 21 1 17 0.47 8 5 3 0 0 0 0 0 0 0
.........................................................................................................................................................CTATTCAGTTGAGCGGCAC............................................................................... 19 0 20 0.45 9 7 1 0 0 0 1 0 0 0
........................................................................................................................................................CCTATTCAGTTGAGCGGCAC............................................................................... 20 0 18 0.44 8 5 0 0 2 0 0 0 1 0
.......................................................................................................................................TTTTGAAGATTGTTGAACCTA............................................................................................... 21 1 12 0.42 5 2 0 0 3 0 0 0 0 0
................................................................................................................................................TTGTTGAACCTATTCAGTTGA...................................................................................... 21 0 16 0.38 6 5 0 0 1 0 0 0 0 0
...................................................................................................................................................TTGAACCTATTCAGTTGAGCG................................................................................... 21 0 17 0.35 6 4 2 0 0 0 0 0 0 0
..........................................................................................................................................................TATTCAGTTGAGCGGCACTG............................................................................. 20 0 20 0.35 7 0 4 0 0 1 2 0 0 0
.......................................ACAAACTTTCTTGCTGTATTAAT............................................................................................................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................AAGATTGTTGAACCTATTCAG.......................................................................................... 21 1 15 0.33 5 0 0 0 5 0 0 0 0 0
..........................................................................................................................................................TATTCAGTTGAGCGGCACT.............................................................................. 19 0 20 0.30 6 5 0 0 1 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCGGCA................................................................................ 22 0 17 0.29 5 5 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACCTATTCAGTTGAGCGGCA................................................................................ 20 0 18 0.28 5 4 1 0 0 0 0 0 0 0
.....................................................................................................................................................GGACCTATTCAGTTGAGCGGC................................................................................. 21 1 18 0.28 5 2 1 0 0 2 0 0 0 0
......................................................................................................................................................AGCCTATTCAGTTGAGCGGCA................................................................................ 21 1 18 0.28 5 4 0 0 0 1 0 0 0 0
............................................................................................................................................AAAATTGTTGAACCTATTCAG.......................................................................................... 21 0 15 0.27 4 3 0 0 0 0 0 0 0 1
...............................................................................................................................................ATTGTTGAACCTATTCAGTTG....................................................................................... 21 0 16 0.25 4 4 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTTGAAAATTGTTGAACCT................................................................................................ 20 0 12 0.25 3 3 0 0 0 0 0 0 0 0
...........................................................................................................................................GAAAATTGTTGAACCTATTCA........................................................................................... 21 0 12 0.25 3 1 0 0 2 0 0 0 0 0
.......................................................................................................................................TTTTGAAAATTGTTGAACCTA............................................................................................... 21 0 12 0.25 3 2 0 0 1 0 0 0 0 0
................................................................................................................................................TTGTTGAACCTATTCAGTTGAG..................................................................................... 22 0 16 0.25 4 0 1 0 1 0 0 0 0 2
..........................................................................................................................................TGAAGATTGTTGAACCTATTC............................................................................................ 21 1 13 0.23 3 1 0 1 1 0 0 0 0 0
..........................................................................................................................................TGAAAATTGTTGAACCTATTC............................................................................................ 21 0 13 0.23 3 2 0 0 1 0 0 0 0 0
.......................................................................................................................................................ACCTATTCAGTTGAGCGGCAC............................................................................... 21 0 18 0.22 4 3 0 0 1 0 0 0 0 0
..........................................................................................................................AGGGCGGTTTGATTTTAGAA............................................................................................................. 20 3 9 0.22 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................................GACCTATTCAGTTGAGCGGCA................................................................................ 21 1 19 0.21 4 4 0 0 0 0 0 0 0 0
.............................................................................................................................................AAATTGTTGAACCTATTCAG.......................................................................................... 20 0 15 0.20 3 1 0 0 2 0 0 0 0 0
.................................................................................................................................................TGTTGGACCTATTCAGTTGAG..................................................................................... 21 1 17 0.18 3 0 0 0 2 0 0 0 0 1
.....................................................................................................................................................GGGCCTATTCAGTTGAGCGGC................................................................................. 21 2 18 0.17 3 0 1 0 1 1 0 0 0 0
......................................................................................................................................................AGCCTATTCAGTTGAGCGGC................................................................................. 20 1 19 0.16 3 1 0 0 0 0 0 0 2 0
........................................................................................................................................TTTGAAGATTGTTGAGCCTATT............................................................................................. 22 2 13 0.15 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................TTTGAAAATTGTTGAACCTAT.............................................................................................. 21 0 13 0.15 2 1 0 0 1 0 0 0 0 0
...................................................................................................................................................TTGAACCTATTCAGTTGAGC.................................................................................... 20 0 20 0.15 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................................AAATTGTTGAACCTATTCAGT......................................................................................... 21 0 14 0.14 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................TTTGAAGATTGTTGAACCTA............................................................................................... 20 1 14 0.14 2 1 0 0 1 0 0 0 0 0
............................................................................................................................................AAGATTGTTGAACCTATTCA........................................................................................... 20 1 15 0.13 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................AATTGTTGAACCTATTCAGTT........................................................................................ 21 0 15 0.13 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................TTGTTGAACCTATTCAGTTG....................................................................................... 20 0 16 0.13 2 1 1 0 0 0 0 0 0 0
...............................................................................................................................................GTTGTTGAACCTATTCAGTTG....................................................................................... 21 1 16 0.13 2 0 0 0 2 0 0 0 0 0
.................................................................................................................................................TGTTGAACCTATTCAGTTGA...................................................................................... 20 0 17 0.12 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................GTTGAACCTATTCAGTTGAG..................................................................................... 20 0 17 0.12 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAGCCTATTCAGTTGAGCGG.................................................................................. 21 1 17 0.12 2 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCGGCACT.............................................................................. 24 0 17 0.12 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCAGTTGAGCGT.................................................................................. 21 1 18 0.11 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGACCTATTCAGTTGAGCGGCA................................................................................ 22 1 18 0.11 2 1 1 0 0 0 0 0 0 0
........................................................................................................................................................CCTATTCAGTTGAGCGGCA................................................................................ 19 0 18 0.11 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCGAC................................................................................. 21 1 18 0.11 2 0 0 0 0 0 1 0 1 0
..........................................................................................................................AGGGCGGTTTGATTTTAGA.............................................................................................................. 19 3 19 0.11 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................CTATTCAGTTGAGCGGCACTT............................................................................. 21 1 20 0.10 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................TTGAACCTATTCAGTTGAG..................................................................................... 19 0 20 0.10 2 0 0 0 2 0 0 0 0 0
............................................................................................................................GGCGGTTTGATTTTAGAAT............................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................GAAGATTGTTGAACCTGTTCA........................................................................................... 21 2 12 0.08 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................GAAGATTGTTGAACCTATTCA........................................................................................... 21 1 12 0.08 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................AGTTTTGAAGATTGTTGAACC................................................................................................. 21 2 12 0.08 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................TTTTGAAGGTTGTTGAACCT................................................................................................ 20 2 12 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TTTGAAAGTTGTTGAACCTAT.............................................................................................. 21 1 13 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCGAAGAGGACAGTGGAACT................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0
...............................................................................................................GTTAAAAAGATATAGCGGTTT....................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GAAAATTGTTGAACCTATTC............................................................................................ 20 0 13 0.08 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGACGAAACTTGGAAAGGAAA........ 21 2 13 0.08 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GAAGGTTGTTGAACCTATTC............................................................................................ 20 2 13 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TTTGAAAATTGTTGAACCTA............................................................................................... 20 0 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AAATGGTTGAACCTATTCAGTTGAGC.................................................................................... 26 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TTGAAAATTGTTGAACCTATT............................................................................................. 21 0 14 0.07 1 0 0 0 1 0 0 0 0 0
..............................................................................................................GGTTAAAAAGATATAGCGGTT........................................................................................................................ 21 0 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................................................TTGGTTAAAAAGATATAGCGGTT........................................................................................................................ 23 0 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................AAAATTGTTGAACCTGTTCAG.......................................................................................... 21 1 15 0.07 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGC................................................................................. 24 0 15 0.07 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................AAAATTGTTGAACCTATTCA........................................................................................... 20 0 15 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AGATTGTTGAACCTATTCAGT......................................................................................... 21 1 15 0.07 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................TTGAAGGTTGTTGAGCCTATT............................................................................................. 21 3 15 0.07 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................AAGGTTGTTGAACCTATTCAG.......................................................................................... 21 2 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................AAGATTGTTGAACCTGTTCAG.......................................................................................... 21 2 15 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................................................TGGTTAAAAAGATATAGCGGTT........................................................................................................................ 22 0 15 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................TTGTTGGGCCTATTCAGTTG....................................................................................... 20 2 16 0.06 1 0 0 0 1 0 0 0 0 0
................................................................................................................TTAAAAAGATATAGCGGTTTG...................................................................................................................... 21 0 16 0.06 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TGAAGATTGTTGAACCT................................................................................................ 17 1 16 0.06 1 0 0 1 0 0 0 0 0 0
............................................................................................................TTGGTTAAAAAGATATAGCGGA......................................................................................................................... 22 1 16 0.06 1 0 1 0 0 0 0 0 0 0
................................................................................................................TTAAAAAGATATAGCGGTTTT...................................................................................................................... 21 1 16 0.06 1 1 0 0 0 0 0 0 0 0
............................................................................................................TTGGTTAAAAAGATATAGCGG.......................................................................................................................... 21 0 16 0.06 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................TTGTTGGACCTATTCAGTTGAG..................................................................................... 22 1 16 0.06 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................ATTGTTGAACCTATTCAGTT........................................................................................ 20 0 16 0.06 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................AAGGTTGTTGAACCTGTTCAG.......................................................................................... 21 3 16 0.06 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................TTGTTGAGCCTATTCAGTTGAG..................................................................................... 22 1 16 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCG................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AACCTATTCAGTTGAGCGGCAC............................................................................... 22 0 17 0.06 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................GAACCTATTCAGTTGGGCGGC................................................................................. 21 1 17 0.06 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AACCTATTCAGTTGAGCGGCAA............................................................................... 22 1 17 0.06 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCAGTTGAGCGGCACTG............................................................................. 26 0 17 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGTTGAGCCTATTCAGTTGA...................................................................................... 20 1 17 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGTTGAACCTATTCAGTTAA...................................................................................... 20 1 17 0.06 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCAGTTGAGCGGC................................................................................. 22 0 17 0.06 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GAAGGTTGTTGAACCTGTTC............................................................................................ 20 3 17 0.06 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................GATTGTTGAACCTATTCAGTTC....................................................................................... 22 2 17 0.06 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TTGAACCTATTCAGTTGAGCGGC................................................................................. 23 0 17 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGTTGAACCTATTCAGTTG....................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCACTTGAGCG................................................................................... 20 1 17 0.06 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................GTTGGACCTATTCAGTTGAG..................................................................................... 20 1 17 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGTTGAACCTATTCAGTTGAGT.................................................................................... 22 1 17 0.06 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCAGTTGAGCGGT................................................................................. 22 1 17 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CAACCTATTCAGTTGAGCGGC................................................................................. 21 1 17 0.06 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................TGAACCTATTCAGTTGAGCGGCA................................................................................ 23 0 17 0.06 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AACCTATTCAGTTGAGCGG.................................................................................. 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGGCCTATTCAGTTGAGCGG.................................................................................. 20 2 18 0.06 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GAAACTATTCAGTTGGGCGTC................................................................................. 21 3 18 0.06 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................CCTATTCAGTCGAGCGGCACTG............................................................................. 22 1 18 0.06 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCCGTTGAGCGGC................................................................................. 21 1 18 0.06 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCGCC................................................................................. 21 1 18 0.06 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................TGAGCCTATTCAGTTGAGCG................................................................................... 20 1 18 0.06 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTTGAAGATTGTTGAAC.................................................................................................. 17 1 18 0.06 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................GGACCTATTCAGTTGAGCGG.................................................................................. 20 1 18 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCTATTCAGTTGAGCGGCTT............................................................................... 23 2 18 0.06 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCCATTCAGTTGAGCGGC................................................................................. 21 1 18 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAACCTATTAAGTTGAGCGGC................................................................................. 21 1 19 0.05 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................ACCTATTCAGTTGAGCGGCAT............................................................................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAACCTATTCAGTTGAGCGGC................................................................................. 21 1 19 0.05 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................GAACCTATTCAGTTCCGCGGC................................................................................. 21 2 19 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCACGAGCCAATCTATCA.................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................ATTCAGTTGAGCGGCACTG............................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AATTTGAAAAGGAAAGGATG... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTTTGATGAGCCAGGCTTT...................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................ATTCAGTTGAGCGGCACT.............................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................ACTATTCAGTTGAGCGGCACT.............................................................................. 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................GACGAAACTTGGAAAGGAAC........ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACGAAACTTGGAAAGGAAA........ 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................TTGGTTATGAAGCTATAGC............................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TTCAGTTGAGCGGCACTG............................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTAATTATTTATCGGAAATTTTTGCACAAGACCTTTGGTGTTTGAAAGAACGATATAATTATTACTTAGTTAGATACGTTTTTTTAATAAAGTATATTTAGCCATTTAACCAATTTTTCTATATCGCCAAACTAAAAACTTTTAACAACTTGGATAAGTCAACTCGCCGTGACGTATAATAAGAATTGTATAGCAAAGTCCTCGGTCAGAAAGTTTCTCCTGCTACCTTGAACCTTTCCTTTACTACTAC
*********************************************************************************..............((.(((((((...((((..............))))))))))).))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902011
testis
 M062
head
 V112
male body		 GSM444067
head
..............................................................................................................................................................................................................TCAGAAAGTTTCTCCTGCTACCTTG.................... 25 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................GATAAGTCAACTCGCCGTGACGTAT......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TTCTATATCGCCAAACTAAAA................................................................................................................. 21 0 3 0.67 2 2 0 0 0 0 0
....................................................................................................................................................ACTTGGATAAGTCAACTCGC................................................................................... 20 0 17 0.41 7 7 0 0 0 0 0
.........................................................................................................................................................GATAAGTCAACTCGCCGTGAC............................................................................. 21 0 20 0.35 7 5 0 1 0 0 1
....................................................................................................................TTTCTATATCGCCAAACTAA................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................................ACTTGGGTAAGTCAACTCGC................................................................................... 20 1 18 0.33 6 4 0 0 1 1 0
....................................................................................................................TTTCTATATCGCCAAACTAAA.................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................TTGGATAAGTCAACTCGCCGT................................................................................ 21 0 17 0.29 5 5 0 0 0 0 0
...................................................................................................................................................AACTTGGATAAGTCAACTCGC................................................................................... 21 0 17 0.24 4 4 0 0 0 0 0
....................................................................................................................................................ACTTGGGTAAGTCAACTCGCC.................................................................................. 21 1 18 0.17 3 1 0 2 0 0 0
....................................................................................................................................................ACTTGGATAAGTCAACTCGCC.................................................................................. 21 0 17 0.12 2 1 0 0 1 0 0
.................................................................................................................................................ACAACTTGGATAAGTCAACT...................................................................................... 20 0 17 0.12 2 2 0 0 0 0 0
........................................................................................................................................................GGATAAGTCAACTCGCCGTGA.............................................................................. 21 0 18 0.11 2 2 0 0 0 0 0
.................................CTTTGGTGTTTAACAGAACGAAAT.................................................................................................................................................................................................. 24 3 10 0.10 1 1 0 0 0 0 0
.................................................................................................................................................ACAACTTGGATAAGTCAACTCGCCGTG............................................................................... 27 0 15 0.07 1 1 0 0 0 0 0
................................................................................................................................................AACAACTTGGATAAGTCAACT...................................................................................... 21 0 16 0.06 1 1 0 0 0 0 0
..................................TTTGGGGTTTGAAAGAACG...................................................................................................................................................................................................... 19 1 17 0.06 1 1 0 0 0 0 0
......................................................................................................................................................TTGGATAAGTCAACTCGCCG................................................................................. 20 0 17 0.06 1 1 0 0 0 0 0
.....................................................................................................................................................CTTGGATAAGTCAACTCGCCG................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0
.................................................................................................................................................ACAACTTGGGTAAGTCAACT...................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0
........................................................................................................................................................GGATAAGTCAACTCGCCGTG............................................................................... 20 0 18 0.06 1 1 0 0 0 0 0
........................................................................................................................................................GGGTAAGTCAACTCGCCGTGAC............................................................................. 22 1 19 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................ATTGGATAAGTCAACTCGCCGT................................................................................ 22 1 19 0.05 1 1 0 0 0 0 0
...................................................................................................................................................AACTTGGGTGAGTCAACTCGC................................................................................... 21 2 19 0.05 1 1 0 0 0 0 0
....................................................................................................................................................ACTTGGGTAAGTCAACTCG.................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................GGTAAGTCAACTCGCCGTGAC............................................................................. 21 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................GATAAGTCAACTCGCCGTGA.............................................................................. 20 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:18390632-18390882 + dps_648 AAATTAAT-AAATAGCCTTTAAA--AACGTGTT-CTGGAAACCACAAAC----TTTCTTGCTATATTA-------ATAATGAATCAATCTATGCAA-AA-AAA------------------------------------------------------------------------------------TTATTTCATATAAATCGGTAAATTGGTTA------AAAAGATATAGCGG-TTTGATTTTTGA----------------AAATTGTTGAACCTATTCAGTTGAGCGGCACTGCATATTATTCTTAACATATCGTTTCAGGAG---CCAGTCTTTCAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATG
droPer2 scaffold_3:1099696-1099917 + dpe_1357 CTGGAA-T-C--------------------------------CACAAAC----TTTCTTGCTATATTA-------ATAATGAATCAATCTATGCAA-AAAAAA------------------------------------------------------------------------------------TTATTTCATATAAATCGGTAAATTGGTTA------AAAAGATATAGCGG-TTTGATTTTTGA----------------AAATTGTTGAACCTATTCAGTTGAGCGGCACTGTATATTATTCTTCACATATCGTTTCAGGAG---CCAGTCTTTTAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATG
droWil2 scf2_1100000004854:419766-419965 + ATATAA-T-AAAAAAAATATAAA--AACCAAACCCAAGAGAAAAAAAAT----GTTTGTATTTTATAA-------ATAATTAATTGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTATTTTGTTTAAATCCGAGTTCTCGTTA------TAAAGATATTAAGT-TTTAAGTTTAAA---------------AATGAAATCAAACCTATTCAGTTGAGCGGCACTGTATATA-CTATAAATAT-TTGT----------------------------------------------------------TTCA
droVir3 scaffold_10019:10001-10189 - ATATAA-T-AAAAAAAATATAAA--AACCAAAC-CAA---ACAAAAAAC----TTTTGTATTTTATAA-------ATAATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTATTTGGTTTAAATCCGAGTGCTCGTTA------TGAAGATATTACGT-TCTAAGTCTAAA---------------AAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGGT-------------------------------------------------------------------GTTTTTGTCTTAACA
droMoj3 scaffold_6540:654343-654398 - TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAG---CCAATCATTTAAAGAGGATGACG----GTACATGGAAAGGCAATGATGATG
droGri2 scaffold_15252:10101224-10101385 - TTAAAA-T-TGCG---------------------TTGGAGAACATGAAC----TTGCTTGTTCCATTA-------ACAATTGATTATACTACACAA--------------------------------------------------------------------------------------------------GTCTAAAACAAAATGGTAATTAAATCGACAAATATATGGTAA-TTTGACTATTTA----------------ACAGTGCTTAACCTATTTAGTTAAGCAGCAGTGTATATCGAT-----------------------------------------------------------------------TCTA
droAna3 scaffold_12916:9462620-9462816 - AAAAAA-T-AAAAAAAATATAAA--AACCAAAC-CAAAAAAAAAAAAAC----TTTTGTATTTTATAA-------AGAATTGATCGTTTTACTTAA-AAAAAA------------------------------------------------------------------------------------TTATTTGGTTTAAATCCGAGTGCTCGTTA------TGAAGATATTATGT-TCTAAGTCTAAA---------------AAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGTATATTATCTGGAAGATGTTAT--------------------------------------------------------------
droBip1 scf7180000394732:9564-9815 + AAAATT-CCAAATAACCGTTGA--------------------------C----TTTTT----------------------------------CCCG-CTACTTTTTTCTTGCAAATAATGAGTAAATGAATGAAGAATAAAATTAAAAATTAAATAGAAAAAAAAACCAATTGGAACAAAGATATAG--------------------------------------------------------------TGAAAAATGTAAGAACAATTTTTCAAACCTATTCAGTTGAGCGGCACTGTATGTTGTTTCTTAAATATAATTTTCAAATTTTACAATCAACAAAGGAAAAAGATGCTCCGGCTCTAAAGAGGAAAAGATAA--
droKik1 scf7180000302660:223690-223874 - AAATAA-T-AAAAATAATATAAC--AACAAACC-CGACAAGACACAATT----TTTATTATTTCACAA-------AAGACAGTTTTCTTTATACAA-AAAAAT------------------------------------------------------------------------------------TTATTTCGATCAAATCGGAGGGCTTGTTG------CAGAGATACACCGT-TTCAAACTTAAA---------------AGAAAAGTCAAACCTATTCAGTTGAGCGGCACTGTATTTCAAT--------------------------------------------------------------------------C
droFic1 scf7180000453928:25950-26149 - GAAAAA-T-TAAATAAGG-AATAAATAATATGT-TTT---T-GAAAAACCTTCTTCAGCATTTTATTA-------TAAAATGATTCAAGAGTTAAA-GAAAA-------------------------------------------------------------------------------------AAAAATTATGGAAATCGGTACACTGGTTT------AGGAATTATAGACAAATTACTTCCTCT----------------AAGATCATGAACCTATTCAGTTGAGCGGCAGTGTATT--ATTCTAAATCTGTT-T--------------------------------------------------------TTCAGG
droEle1 scf7180000490172:7703-7838 - TTGAT------------------------------------------------TTTTGTTTTTTATTG-----------------------------------CTTCCATGCTATTAACCGGTTT----------------------------------------------------------------------------------------------------------------------------TTAAAATT-----------------------------AAA--TGTCTTGCTTATTATATGT-CTATATCCTTGCAGAAG---CCAATCATTCAAAGAAGATGATG----GGACCTGGAAAGGTAATGATGATG
droRho1 scf7180000762212:632-815 - AAAAGA-T-AAAAA-AATATAAA--AACCAAAC-CAAA-AAAAAAAAAC----TTTTGTATTTTATAA-------AGAATTGATCGTTTTACTTAA-AAAAAT------------------------------------------------------------------------------------TTATTTGGTTTAAATCCGAGTGCTCGTTA------TGAAGATATTATGT-TCTAAGTCTAAA----------------AAGAAGTCAAACCTATTCAGTTGAGCGGCAGTGCCTATA------------------------------------------------------------------------ATCATT
droBia1 scf7180000301661:3958-4018 + TATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAG---TCAATCATTCAAAGAGGATGATG----GTACTTGGAAAGGTAACGATGACG
droTak1 scf7180000411287:5279-5334 - TTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAG---CCAATCCTTTAAAGAAGATGATG----GAACCTGGAAAGGTAATGATGATG
droEug1 scf7180000408813:3177-3287 - TTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------AAACTGTT---TTTATACAATTAA--GGTCTTGTTTACAATATGT-ACTTATACTTGCAGAAG---CCAATCCTTTAAAGAAGATGATG----GGACATGGAAAGGTAATGATGACG
dm3 chr3R:403097-403294 + AAAAAA-T-AAAAATGATATAAA--AACAAATT-TAAGAGATCAGAAAC----TTTGCTATTAAACAA-------ATGACTGATCTATTCATACAT-AAAAAT------------------------------------------------------------------------------------TTATTTCGCTTAAATTGGATTGCATATAA------CCTAGTTACAACGG-TTCAAACCTAAA---------------CAAATAGTCAAACCTATTCAGTTGAACGGCACTGTATTTGAATATTCTAATGT-------------------------------------------------------------CTTT
droSim2 2r:3122185-3122314 - AAAATA-GTA-AAAATGTATGAT--TTCTATA-----TAAATCAAAATC----TATTTTGTTTTATACGGATATTTAAAATTATTTAATGTATATATAA-AA----------------------------------------------------------------------------------------------------------------------------------------------T-TA----------------AAATAAGTCAAACCTATTCAGTTGATCGGCACTGTATGT-------------------------------------------------------------------------------
droSec2 scaffold_64:176498-176558 - TATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAGAAG---TCAATCATTCAAAGAAGATGATG----GGACCTGGAAAGGCAATGATGATG
droYak3 v2_chrUn_008:93295-93350 - TTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAG---TCAATCATTCAAAGAAGATGATG----GGACATGGAAAGGCAATGATGATG
droEre2 scaffold_4845:2698849-2699001 + AAATAT-C-AAAACTCCTTTAAT--AAAGAAAC-TAGCAGAACCAAAAC----TTTGCTATTTTAAAA-------ATGAC---------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAGG-TTT---------TGAAAATTA------AAAAAACTCAAACCTATTCAGTTGAGCGGCACTGTATGTATTTTTTT-TAAACTGTATCAACAG---ACGGT----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAATTAAT-AAATAGCCTTTAAA--AACGTGTT-CTGGAAACCACAAAC----TTTCTTGCTATATTA-------ATAATGAATCAATCTATGCAA-AA-AAA------------------------------------------------------------------------------------TTATTTCATATAAATCGGTAAATTGGTTA------AAAAGATATAGCGG-TTTGATTTTTGA----------------AAATTGTTGAACCTATTCAGTTGAGCGGCACTGCATATTATTCTTAACATATCGTTTCAGGAG---CCAGTCTTTCAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGC........................................................................................211718.5931661890301498042
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCA.......................................................................................21172.714613400017120
...............................................................................................................................................................................................................................................................................................................................................TCTTTCAAAGAGGACGATG----GAACTTG.................2612.0020000000020
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGG.........................................................................................21171.943302510015010
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTG....................................................................................21201.452952300010000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACT.....................................................................................20201.352701900004040
.....................................................................................................................................................................................................................................................................................................................................................AAAGAGGACGATG----GAACTTGGAAA.............2411.0010000000010
........................................................................................................................................................................................................................................................................................TTCAGTTGAGCGGCACTGCA..................................................................................2011.0010000000010
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACT.....................................................................................21180.941701100015000
.............................................................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTGAG............................................................................................21170.76130800005000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGC........................................................................................20170.761311200000000
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACTG....................................................................................22180.72130900004000
..............................................................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGC...........................................................................................21170.65110800002010
.................................................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGG.........................................................................................20170.59100700003000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCAC......................................................................................19200.4591700001000
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCAC......................................................................................20180.4480501000020
............................................................................................................................................................................................................................................................................TTGTTGAACCTATTCAGTTGA.............................................................................................21160.3860500000010
...............................................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAGCG..........................................................................................21170.3560400002000
......................................................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTG....................................................................................20200.3572000014000
......................................................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACT.....................................................................................19200.3060500000010
.................................................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGCA.......................................................................................22170.2950500000000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCA.......................................................................................20180.2850400001000
........................................................................................................................................................................................................................................................A----------------AAATTGTTGAACCTATTCAG.................................................................................................21150.2740300000100
...........................................................................................................................................................................................................................................................................ATTGTTGAACCTATTCAGTTG..............................................................................................21160.2540400000000
...................................................................................................................................................................................................................................................TTTTGA----------------AAATTGTTGAACCT.......................................................................................................20120.2530300000000
.......................................................................................................................................................................................................................................................GA----------------AAATTGTTGAACCTATTCA..................................................................................................21120.2530100000020
...................................................................................................................................................................................................................................................TTTTGA----------------AAATTGTTGAACCTA......................................................................................................21120.2530200000010
............................................................................................................................................................................................................................................................................TTGTTGAACCTATTCAGTTGAG............................................................................................22160.2540000001210
......................................................................................................................................................................................................................................................TGA----------------AAATTGTTGAACCTATTC...................................................................................................21130.2330200000010
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAC......................................................................................21180.2240300000010
.........................................................................................................................................................................................................................................................................AAATTGTTGAACCTATTCAG.................................................................................................20150.2030100000020
....................................................................................................................................................................................................................................................TTTGA----------------AAATTGTTGAACCTAT.....................................................................................................21130.1520100000010
...............................................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAGC...........................................................................................20200.1530300000000
.........................................................................................................................................................................................................................................................................AAATTGTTGAACCTATTCAGT................................................................................................21140.1420200000000
..........................................................................................................................................................................................................................................................................AATTGTTGAACCTATTCAGTT...............................................................................................21150.1320200000000
............................................................................................................................................................................................................................................................................TTGTTGAACCTATTCAGTTG..............................................................................................20160.1320100001000
.............................................................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTGA.............................................................................................20170.1220200000000
..............................................................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAG............................................................................................20170.1220200000000
.................................................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGCACT.....................................................................................24170.1220200000000
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGT.........................................................................................21180.1120200000000
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCA.......................................................................................19180.1120200000000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTT....................................................................................21200.1020200000000
...............................................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAG............................................................................................19200.1020000000020
....................................................................................................................................................................................................................GTTA------AAAAGATATAGCGG-TTT..............................................................................................................................................21130.0810100000000
.......................................................................................................................................................................................................................................................GA----------------AAATTGTTGAACCTATTC...................................................................................................20130.0810100000000
....................................................................................................................................................................................................................................................TTTGA----------------AAATTGTTGAACCTA......................................................................................................20140.0710100000000
.....................................................................................................................................................................................................................................................TTGA----------------AAATTGTTGAACCTATT....................................................................................................21140.0710000000010
...................................................................................................................................................................................................................GGTTA------AAAAGATATAGCGG-TT...............................................................................................................................................21150.0710100000000
.................................................................................................................................................................................................................TTGGTTA------AAAAGATATAGCGG-TT...............................................................................................................................................23150.0710100000000
..............................................................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGC........................................................................................24150.0711000000000
........................................................................................................................................................................................................................................................A----------------AAATTGTTGAACCTATTCA..................................................................................................20150.0710100000000
..................................................................................................................................................................................................................TGGTTA------AAAAGATATAGCGG-TT...............................................................................................................................................22150.0710100000000
.....................................................................................................................................................................................................................TTA------AAAAGATATAGCGG-TTTG.............................................................................................................................................21160.0610000001000
.................................................................................................................................................................................................................TTGGTTA------AAAAGATATAGCGG-A................................................................................................................................................22160.0610000001000
.....................................................................................................................................................................................................................TTA------AAAAGATATAGCGG-TTTT.............................................................................................................................................21160.0610100000000
.................................................................................................................................................................................................................TTGGTTA------AAAAGATATAGCGG-.................................................................................................................................................21160.0610000001000
...........................................................................................................................................................................................................................................................................ATTGTTGAACCTATTCAGTT...............................................................................................20160.0610100000000
.................................................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCG..........................................................................................19170.0610100000000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAC......................................................................................22170.0610010000000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAA......................................................................................22170.0610000001000
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGCACTG....................................................................................26170.0610100000000
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGC........................................................................................22170.0610100000000
...............................................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAGCGGC........................................................................................23170.0610100000000
.............................................................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTG..............................................................................................19170.0610100000000
.............................................................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTGAGT...........................................................................................22170.0610000001000
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGT........................................................................................22170.0610100000000
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGCA.......................................................................................23170.0610100000000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGG.........................................................................................19170.0610100000000
.................................................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGCTT......................................................................................23180.0610000001000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAT......................................................................................21190.0510100000000
.......................................................................................................................................................................................................................................................................................ATTCAGTTGAGCGGCACTG....................................................................................19200.0510100000000
.......................................................................................................................................................................................................................................................................................ATTCAGTTGAGCGGCACT.....................................................................................18200.0510100000000
........................................................................................................................................................................................................................................................................................TTCAGTTGAGCGGCACTG....................................................................................18200.0510100000000
droPer2
CTGGAA-T-C--------------------------------CACAAAC----TTTCTTGCTATATTA-------ATAATGAATCAATCTATGCAA-AAAAAA------------------------------------------------------------------------------------TTATTTCATATAAATCGGTAAATTGGTTA------AAAAGATATAGCGG-TTTGATTTTTGA----------------AAATTGTTGAACCTATTCAGTTGAGCGGCACTGTATATTATTCTTCACATATCGTTTCAGGAG---CCAGTCTTTTAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................CGATG----GAACTTGGAAAGGA..........1911.001100000
............................................................................................................................................................................................TATTTCATATAAATCGGTAAA.............................................................................................................................................................................2120.501010000
..............................................................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGC........................................................................................24140.213300000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA..................................................................................26190.163300000
..............................................................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGCACTGT...................................................................................29130.081100000
...................................................................................................................................................................................................................GGTTA------AAAAGATATAGCGG-TT...............................................................................................................................................21180.061000001
................................................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGG.........................................................................................21190.051000001
droWil2
ATATAA-T-AAAAAAAATATAAA--AACCAAACCCAAGAGAAAAAAAAT----GTTTGTATTTTATAA-------ATAATTAATTGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTATTTTGTTTAAATCCGAGTTCTCGTTA------TAAAGATATTAAGT-TTTAAGTTTAAA---------------AATGAAATCAAACCTATTCAGTTGAGCGGCACTGTATATA-CTATAAATAT-TTGT----------------------------------------------------------TTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................TAAA---------------AATGAAATCAAACCTATTCAGT................................................................................................2621.00201010
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTAT.................................................................................2650.60302010
..........................................................................................................................................................................................................................................................................TGAAATCAAACCTATTCAGTTGAGCGG.........................................................................................2720.50100010
...............................................................................................................................................................................................................................AAAGATATTAAGT-TTTAAGTTTAAA---------------A.....................................................................................................................2620.50101000
..............................................................................................................................................................................................TTTTGTTTAAATCCGAGTTCTCGT........................................................................................................................................................................2420.50101000
...............................................................................................................................................................................................................................AAAGATATTAAGT-TTTAAGTTTAAA---------------AA....................................................................................................................2720.50100010
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTG....................................................................................24160.44706010
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAC......................................................................................22160.44707000
.......................................................................................................................................................................................................................................................................................ATTCAGTTGAGCGGCACTGTAT.................................................................................2270.29202000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA..................................................................................26140.21303000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTG....................................................................................21160.19320100
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAC......................................................................................21160.19303000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTG....................................................................................23160.19311010
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACT.....................................................................................23160.19302010
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCA.......................................................................................21170.18302010
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTGTA..................................................................................23140.14211000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACT.....................................................................................22160.13202000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTG....................................................................................27160.13202000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGC........................................................................................20180.11200110
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACTGTA..................................................................................24140.07101000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTGTA..................................................................................29140.07100100
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTA..................................................................................25140.07101000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGT...................................................................................25160.06101000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCAC......................................................................................25160.06101000
................................................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACTG....................................................................................26160.06101000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGT...................................................................................24160.06101000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCG..........................................................................................21190.05101000
droVir3
ATATAA-T-AAAAAAAATATAAA--AACCAAAC-CAA---ACAAAAAAC----TTTTGTATTTTATAA-------ATAATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTATTTGGTTTAAATCCGAGTGCTCGTTA------TGAAGATATTACGT-TCTAAGTCTAAA---------------AAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGGT-------------------------------------------------------------------GTTTTTGTCTTAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATAT.......................................................................................................................................................2484.75380000902020040000000000010010000000020017000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTAT...............................................................................................................................................................................................2771.5711000040000001010000000000000000001010003000000000000000000000000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACCTAT.....................................................................................................2761.177000030000001000000000000000000000010002000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTA................................................................................................................................................................................................2671.148000030000000000000000000000000001012001000000000000000000000000
.....................................................................................................................................................................................................................TTA------TGAAGATATTACGT-TCTAAGTCT........................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TACGT-TCTAAGTCTAAA---------------AAAGA.................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AAGAAGTCAAACCTATTCAGTTGAGC...........................................................................................2661.006000000100000000000000000000000000020003000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATATTA.....................................................................................................................................................2680.887000010000000100000000000000000000001004000000000000000000000000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACCTA......................................................................................................2660.835000010000000010000000000100000000001001000000000000000000000000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACCT.......................................................................................................2560.674000020000000000000000000000000000000002000000000000000000000000
................................................................................TGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTAT...............................................................................................................................................................................................2670.574000000100000000000000000001000002000000000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATATT......................................................................................................................................................2580.504000001000000010000000000000000000000002000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------...................................................................................................................................................................................................2380.504000000000000000000000000000000000000004000000000000000000000000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACC........................................................................................................2460.503000010000000000000000001000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................TCTAAGTCTAAA---------------AAAGAAGTCAAACCTA......................................................................................................2860.503001000000000000000000000001000001000000000000000000000000000000
............................................................................TAATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------...................................................................................................................................................................................................2680.504000000000000000000000000010000001002000000000000000000000000000
.............................................................................................................................................................................................................................................TCTAAGTCTAAA---------------AAAGAAGTCAAACC........................................................................................................2660.332000000000000010000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................CTAAGTCTAAA---------------AAAGAAGTCAAACC........................................................................................................2560.332001000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTG....................................................................................27100.303000000000000000000000000001000000011000000000000000000000000000
...........................................................................................................................................................................................................................................................................GAAGTCAAACCTATTCAGTTGAGCGGC........................................................................................2770.292000000000000000000000000000000001010000000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTATT..............................................................................................................................................................................................2870.292000000000000100000000000000000000001000000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TT.................................................................................................................................................................................................2570.292000000000000010000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................TTAAATCCGAGTGCTCGTTA------TGAAG...........................................................................................................................................................2580.252000000000000000000000000000000000000002000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................2180.252000000001000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................ATCCGAGTGCTCGTTA------TGAAGATAT.......................................................................................................................................................2580.252000000000000000000000000000000000000002000000000000000000000000
....................................................................................................................................................................................................TTAAATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................2680.252000000000000000000000000000000001000001000000000000000000000000
..............................................................................................................................................................................................................................................CTAAGTCTAAA---------------AAAGAAGTCAAACCTA......................................................................................................2760.171000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AAGAAGTCAAACCTATTCAGTTGA.............................................................................................2460.171000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACCTATT....................................................................................................2860.171000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................AAGAAGTCAAACCTATTCAGTTGAGCGG.........................................................................................2860.171000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTGG...................................................................................2160.171000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAGC...........................................................................................2760.171000000000000000000000000010000000000000000000000000000000000000
..............................................................................ATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TTA................................................................................................................................................................................................2770.141000000000000000000000000000000001000000000000000000000000000000
.............................................................................AATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------T..................................................................................................................................................................................................2670.141000000000000000000000000000000000010000000000000000000000000000
..............................................................TTATAA-------ATAATTGATCGTTTTAC..................................................................................................................................................................................................................................................................................................2370.141000000100000000000000000000000000000000000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------T..................................................................................................................................................................................................2470.141000000000000000000000000000000000000001000000000000000000000000
............................................................................TAATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------TT.................................................................................................................................................................................................2870.141000000000000000000000000100000000000000000000000000000000000000
............................................................................TAATTGATCGTTTTACTTAA-CAAAAT------------------------------------------------------------------------------------T..................................................................................................................................................................................................2770.141000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AGAAGTCAAACCTATTCAGTTGAG............................................................................................2470.141000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATCA.......................................................................................................................................................2480.131000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATA........................................................................................................................................................2380.131000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTGGTTTAAATCCGAGTGCTCGTTA------................................................................................................................................................................2580.131000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGAT.........................................................................................................................................................2280.131000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAA............................................................................................................................................................1980.131000000000000000000000000000000000000001000000000000000000000000
...............................................................................TTGATCGTTTTACTTAA-CA...........................................................................................................................................................................................................................................................................................1980.131000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................TTTAAATCCGAGTGCTCGTTA------TGAAGAT.........................................................................................................................................................2880.131000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................TTGGTTTAAATCCGAGTGCTC..........................................................................................................................................................................2180.131000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................ATTTGGTTTAAATCCGAGTGC............................................................................................................................................................................2180.131000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATATTC.....................................................................................................................................................2680.131000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................TAAATCCGAGTGCTCGTTA------TGAA............................................................................................................................................................2380.131000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................TAAATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................2580.131000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATCCGAGTGCTCGTTA------TGAAGATA........................................................................................................................................................2480.131000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................TTTGGTTTAAATCCGAGTGCTCGTTA------T...............................................................................................................................................................2780.131000000000000000000000000000000000000001000000000000000000000000
........................................................TGTATTTTATAA-------ATAATTGATCGTTT.....................................................................................................................................................................................................................................................................................................2690.111000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTCAGTTGAGCGGCACTG....................................................................................18100.101010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACT.....................................................................................26100.101000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCAC......................................................................................25110.091000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGT...........................................................................................19140.071000000000000000000000000000000000010000000000000000000000000000
droMoj3
TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAG---CCAATCATTTAAAGAGGATGACG----GTACATGGAAAGGCAATGATGATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAGGATGACG----GTA.....................2011.001000001
droGri2
TTAAAA-T-TGCG---------------------TTGGAGAACATGAAC----TTGCTTGTTCCATTA-------ACAATTGATTATACTACACAA--------------------------------------------------------------------------------------------------GTCTAAAACAAAATGGTAATTAAATCGACAAATATATGGTAA-TTTGACTATTTA----------------ACAGTGCTTAACCTATTTAGTTAAGCAGCAGTGTATATCGAT-----------------------------------------------------------------------TCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AAAAAA-T-AAAAAAAATATAAA--AACCAAAC-CAAAAAAAAAAAAAC----TTTTGTATTTTATAA-------AGAATTGATCGTTTTACTTAA-AAAAAA------------------------------------------------------------------------------------TTATTTGGTTTAAATCCGAGTGCTCGTTA------TGAAGATATTATGT-TCTAAGTCTAAA---------------AAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGTATATTATCTGGAAGATGTTAT--------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAC......................................................................................22165.63904824000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACT.....................................................................................23165.068121572010
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTG....................................................................................24153.8758242013010
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA..................................................................................26153.134724184010
.....................................................................................................................................................................................................................................................................................................CACTGTATATTATCTGGAAGATGTTA...............................................................2612.002011000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACC.....................................................................................23161.13180180000
...................................................................................................................................................................................................................................................................................................GGCACTGTATATTATCTGGAAGATGT.................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................TCAGTTGAGCGGCACTGTATATTATC...........................................................................2611.001010000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGT...................................................................................25150.9314671000
..............................................................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCAC......................................................................................2640.753030000
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAGC...........................................................................................27150.6710190000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCAC......................................................................................23160.63100100000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACT.....................................................................................26160.6310181000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCAC......................................................................................25160.569090000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACT.....................................................................................24160.569270000
..............................................................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCACT.....................................................................................2740.502020000
......................................................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTGTATATT..............................................................................2620.501100000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTG....................................................................................25150.477511000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTATA................................................................................2890.444400000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTAT.................................................................................27100.404040000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAC......................................................................................21160.386240000
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTG....................................................................................27150.335131000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTATA................................................................................2790.333300000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTG....................................................................................23150.335500000
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGA.............................................................................................25150.274004000
..............................................................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCACC.....................................................................................2740.251010000
.....................................................................................................................................................................................................TAAATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................25150.203030000
.........................................................................................................................................................................................................TCCGAGTGCTCGTTA------TGAAGATATTATG...................................................................................................................................................28150.203210000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGC........................................................................................20200.204040000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGT...................................................................................24150.203201000
.......................................................TTGTATTTTATAA-------AGAATTGATCGTT......................................................................................................................................................................................................................................................................................................26150.203010020
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGC........................................................................................21200.204100021
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAG............................................................................................26150.203110010
................................................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGG.........................................................................................21200.153200100
......................................................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTGTATAT...............................................................................2570.141010000
.....................................................................................................................................................................................................TAAATCCGAGTGCTCGTTA------TGAAGATA........................................................................................................................................................27150.132020000
....................................................................................................................................................................................................TTAAATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................26150.132020000
...................................................................................................................................................................................................TTTAAATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................27150.132100010
.....................................................................................................................................................................................................TAAATCCGAGTGCTCGTTA------TGAA............................................................................................................................................................23150.132110000
..............................................................................................................................................................................................TTTGGTTTAAATCCGAGTGCTCGT........................................................................................................................................................................24150.132110000
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTG..............................................................................................24150.132110000
..............................................................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGC........................................................................................24150.132110000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTA..................................................................................25150.132200000
................................................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACT.....................................................................................25160.132020000
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACT.....................................................................................21160.132100010
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACC.....................................................................................26160.132020000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTAA.................................................................................27170.122200000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTGTATA................................................................................2590.111100000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGTAT.................................................................................28100.101010000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGG.........................................................................................19200.102000020
...............................................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCA.......................................................................................24200.102200000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTAT.................................................................................26100.101010000
..........................ACCAAAC-CAAAAAAAAAAAAAC----TTT......................................................................................................................................................................................................................................................................................................................................25130.081010000
.............................................................................................................................................................................................................................................TCTAAGTCTAAA---------------AAAGAAGTCAAACC........................................................................................................26150.071010000
.......................................................TTGTATTTTATAA-------AGAATTGATCGTTT.....................................................................................................................................................................................................................................................................................................27150.071010000
..............................................................................................................................................................................................................GTGCTCGTTA------TGAAGATATTATGT-.................................................................................................................................................24150.071001000
.....................................................................................................................................................................................................TAAATCCGAGTGCTCGTTA------TGAAG...........................................................................................................................................................24150.071010000
..............................................................................................................................................................................................................................TGAAGATATTATGT-TCTAAGG..........................................................................................................................................21150.071000010
.....................................................................................................................................................................................................................TTA------TGAAGATATTATGT-TCTAAGTCTAAA---------------......................................................................................................................29150.071100000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGC...................................................................................25150.071010000
...................................................................A-------AGAATTGATCGTTTTACTTAA-AA...........................................................................................................................................................................................................................................................................................24150.071100000
.....................................................TTTTGTATTTTATAA-------AGAATTGATCGT.......................................................................................................................................................................................................................................................................................................27150.071010000
...........................................................................................................................................................................................................CGAGTGCTCGTTA------TGAAGATATTATG...................................................................................................................................................26150.071100000
....................................................................................................................................................................................................TTAAATCCGAGTGCTCGTTA------................................................................................................................................................................20150.071010000
.........................................................................................................................................................................................................................................................................AAGAAGTCAAACCTATTCAGTTGAGC...........................................................................................26150.071010000
..............................................................................................................................................................................................TTTGGTTTAAATCCGAGTGCTCGTC.......................................................................................................................................................................25150.071010000
..............................................................................................................................................................................................................................TGAAGATATTATGT-TCTAAGTCTAAA---------------AA....................................................................................................................28150.071000010
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGTA..................................................................................27150.071100000
..............................................................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGG.........................................................................................23150.071100000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGC...................................................................................26150.071010000
.......................................................................................................................................................................................................AATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................23150.071010000
......................................................................................................................................................................................................................TA------TGAAGATATTATGT-TCTAAGTC.........................................................................................................................................24150.071010000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACCT.......................................................................................................25150.071010000
..............................................................................................................................................................................................TTTGGTTTAAATCCGAGTGCTCGTT.......................................................................................................................................................................25150.071100000
..........................................................................................................................................................................................................................................................................AGAAGTCAAACCTATTCAGTTGAGCGG.........................................................................................27150.071100000
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAC............................................................................................26150.071010000
....................................................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACTGT...................................................................................23150.071010000
..............................................................................................................................................................................................................GTGCTCGTTA------TGAAGATATTATGT-T................................................................................................................................................25150.071000010
...............................................................................................................................................................................................TTGGTTTAAATCCGAGTGCTCGTTA------................................................................................................................................................................25150.071010000
...............................................................................TTGATCGTTTTACTTAA-AAAAAA------------------------------------------------------------------------------------TTAT...............................................................................................................................................................................................27150.071100000
..........................................................................................................................................................................................................................................................................AGAAGTCAAACCTATTCAGTTGAGCGGC........................................................................................28150.071010000
.................................................................................................................................................................................................GGTTTAAATCCGAGTGCTCGTTA------TGAAGA..........................................................................................................................................................29150.071100000
................................................................................................................................................................................................TGGTTTAAATCCGAGTGCTCG.........................................................................................................................................................................21150.071100000
...........................................................................................................................................................................................................................................T-TCTAAGTCTAAA---------------AAAGAAGTCAAACC........................................................................................................27150.071010000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGT...................................................................................26150.071100000
..............................................AAC----TTTTGTATTTTATAA-------AGAATTGATC.........................................................................................................................................................................................................................................................................................................28150.071100000
..................................................................AA-------AGAATTGATCGTTTTACTTAA-AAA..........................................................................................................................................................................................................................................................................................26150.071100000
......................................................TTTGTATTTTATAA-------AGAATTGATCGT.......................................................................................................................................................................................................................................................................................................26150.071010000
..............................................................................................................................................................................................TTTGGTTTAAATCCGAGTGCTCGTTA------TG..............................................................................................................................................................28150.071100000
..................................................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTT..................................................................................26150.071010000
.........................................................GTATTTTATAA-------AGAATTGATCGTTT.....................................................................................................................................................................................................................................................................................................25150.071010000
..............................................................................................................................................................................................................................................CTAAGTCTAAA---------------AAAGAAGTCAAACC........................................................................................................25150.071010000
........................................................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAGCG..........................................................................................28150.071100000
...............................................................................................................................................................................................TTGGTTTAAATCCGAGTGCTCGTTA------TG..............................................................................................................................................................27150.071010000
..................................................................AA-------AGAATTGATCGTTTTACTTAA-AAAA.........................................................................................................................................................................................................................................................................................27150.071100000
........................................................................................................................................................................................................................................ATGT-TCTAAGTCTAAA---------------AAAGA.................................................................................................................21150.071000001
..................................................................................................................................................................................................................TCGTTA------TGAAGATATTATGT-TCTAAGTC.........................................................................................................................................28150.071010000
................................................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACTG....................................................................................26150.071100000
.......................................................................................................................................................................................................................................TATGT-TCTAAGTCTAAA---------------AAAGAAGTCA............................................................................................................27150.071000010
..............................................................................................................................................................................................................GTGCTCGTTA------TGAAGATA........................................................................................................................................................18150.071010000
.............................................................................................................................................................................................ATTTGGTTTAAATCCGAGTGCTCGTTA------................................................................................................................................................................27150.071100000
...............................................................................................................................................................................................................................................TAAGTCTAAA---------------AAAGAAGTCAAACCTAT.....................................................................................................27150.071001000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCAC......................................................................................19160.061010000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACC.....................................................................................24160.061010000
......................................................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACT.....................................................................................19160.061010000
.....................................................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACT.....................................................................................20160.061010000
...................................................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACT.....................................................................................22160.061100000
................................................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACC.....................................................................................25160.061010000
............................CAAAC-CAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................18200.051010000
.................................................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCA.......................................................................................22200.051000010
droBip1
AAAATT-CCAAATAACCGTTGA--------------------------C----TTTTT----------------------------------CCCG-CTACTTTTTTCTTGCAAATAATGAGTAAATGAATGAAGAATAAAATTAAAAATTAAATAGAAAAAAAAACCAATTGGAACAAAGATATAG--------------------------------------------------------------TGAAAAATGTAAGAACAATTTTTCAAACCTATTCAGTTGAGCGGCACTGTATGTTGTTTCTTAAATATAATTTTCAAATTTTACAATCAACAAAGGAAAAAGATGCTCCGGCTCTAAAGAGGAAAAGATAA--SizeHit CountTotal NormTotal
No Reads
droKik1
AAATAA-T-AAAAATAATATAAC--AACAAACC-CGACAAGACACAATT----TTTATTATTTCACAA-------AAGACAGTTTTCTTTATACAA-AAAAAT------------------------------------------------------------------------------------TTATTTCGATCAAATCGGAGGGCTTGTTG------CAGAGATACACCGT-TTCAAACTTAAA---------------AGAAAAGTCAAACCTATTCAGTTGAGCGGCACTGTATTTCAAT--------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droFic1
GAAAAA-T-TAAATAAGG-AATAAATAATATGT-TTT---T-GAAAAACCTTCTTCAGCATTTTATTA-------TAAAATGATTCAAGAGTTAAA-GAAAA-------------------------------------------------------------------------------------AAAAATTATGGAAATCGGTACACTGGTTT------AGGAATTATAGACAAATTACTTCCTCT----------------AAGATCATGAACCTATTCAGTTGAGCGGCAGTGTATT--ATTCTAAATCTGTT-T--------------------------------------------------------TTCAGGSizeHit CountTotal NormTotal
No Reads
droEle1
TTGAT------------------------------------------------TTTTGTTTTTTATTG-----------------------------------CTTCCATGCTATTAACCGGTTT----------------------------------------------------------------------------------------------------------------------------TTAAAATT-----------------------------AAA--TGTCTTGCTTATTATATGT-CTATATCCTTGCAGAAG---CCAATCATTCAAAGAAGATGATG----GGACCTGGAAAGGTAATGATGATGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAAGA-T-AAAAA-AATATAAA--AACCAAAC-CAAA-AAAAAAAAAC----TTTTGTATTTTATAA-------AGAATTGATCGTTTTACTTAA-AAAAAT------------------------------------------------------------------------------------TTATTTGGTTTAAATCCGAGTGCTCGTTA------TGAAGATATTATGT-TCTAAGTCTAAA----------------AAGAAGTCAAACCTATTCAGTTGAGCGGCAGTGCCTATA------------------------------------------------------------------------ATCATTSizeHit CountTotal NormTotal
No Reads
droBia1
TATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAG---TCAATCATTCAAAGAGGATGATG----GTACTTGGAAAGGTAACGATGACGSizeHit CountTotal NormTotal
No Reads
droTak1
TTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAG---CCAATCCTTTAAAGAAGATGATG----GAACCTGGAAAGGTAATGATGATGSizeHit CountTotal NormTotal
No Reads
droEug1
TTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------AAACTGTT---TTTATACAATTAA--GGTCTTGTTTACAATATGT-ACTTATACTTGCAGAAG---CCAATCCTTTAAAGAAGATGATG----GGACATGGAAAGGTAATGATGACGSizeHit CountTotal NormTotal
No Reads
dm3
AAAAAA-T-AAAAATGATATAAA--AACAAATT-TAAGAGATCAGAAAC----TTTGCTATTAAACAA-------ATGACTGATCTATTCATACAT-AAAAAT------------------------------------------------------------------------------------TTATTTCGCTTAAATTGGATTGCATATAA------CCTAGTTACAACGG-TTCAAACCTAAA---------------CAAATAGTCAAACCTATTCAGTTGAACGGCACTGTATTTGAATATTCTAATGT-------------------------------------------------------------CTTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................CACTGTATTTGAATATTCT......................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CACTGTATTTGAATATTC.......................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACTGATCTATTCATACAT-AA...........................................................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ACAACGG-TTCAAACCTAAA---------------CAA...................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ATCTATTCATACAT-AAAAAT------------------------------------------------------------------------------------TTAT...............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGAACGGCACTGTATTTGAATA..........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGAACGGCACTGTATTTGAATATTCT......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TCGCTTAAATTGGATTGCATATAA------CC..............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TATAAA--AACAAATT-TAAGAGATCAGA................................................................................................................................................................................................................................................................................................................................................2680.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TT-TAAGAGATCAGAAAC----TTTGCTAT.................................................................................................................................................................................................................................................................................................................................2590.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TGACTGATCTATTCATACA...............................................................................................................................................................................................................................................................................................1980.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATT-TAAGAGATCAGAAAC----TTTGCTAT.................................................................................................................................................................................................................................................................................................................................2690.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AATGATATAAA--AACAAATT-TAAGAGA.....................................................................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AA--AACAAATT-TAAGAGATCAGAAAC----T........................................................................................................................................................................................................................................................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ACCTAAA---------------CAAATAGTCAAACC........................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AACAAATT-TAAGAGATCAGAA...............................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAAA---------------CAAATAGTCAAACCTATTCAGT................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTAAA---------------CAAATAGTCAAACCTA......................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAAA--AACAAATT-TAAGAGATCAGA................................................................................................................................................................................................................................................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................A--AACAAATT-TAAGAGATCAGA................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TGACTGATCTATTCATACAT-A............................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................A-------ATGACTGATCTATTCATACA...............................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TATAAA--AACAAATT-TAAGAGATCAG.................................................................................................................................................................................................................................................................................................................................................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................T-TAAGAGATCAGAAAC----TTTGCTATT................................................................................................................................................................................................................................................................................................................................2590.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................T-TAAGAGATCAGAAAC----TTTGC....................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................TAAGAGATCAGAAAC----TTTGCT...................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...............................TT-TAAGAGATCAGAAAC----TTTGCTA..................................................................................................................................................................................................................................................................................................................................2490.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................TAGTCAAACCTATTCAGTTGA.............................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGAGATCAGAAAC----TTTGCTAT.................................................................................................................................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................GAGATCAGAAAC----TTTGCTATT................................................................................................................................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AAAT------------------------------------------------------------------------------------TTATTTCGCTTACG.....................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
AAAATA-GTA-AAAATGTATGAT--TTCTATA-----TAAATCAAAATC----TATTTTGTTTTATACGGATATTTAAAATTATTTAATGTATATATAA-AA----------------------------------------------------------------------------------------------------------------------------------------------T-TA----------------AAATAAGTCAAACCTATTCAGTTGATCGGCACTGTATGT-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAGAAG---TCAATCATTCAAAGAAGATGATG----GGACCTGGAAAGGCAATGATGATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAG---TCAATCATTCAAAGAAGATGATG----GGACATGGAAAGGCAATGATGATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAATAT-C-AAAACTCCTTTAAT--AAAGAAAC-TAGCAGAACCAAAAC----TTTGCTATTTTAAAA-------ATGAC---------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAGG-TTT---------TGAAAATTA------AAAAAACTCAAACCTATTCAGTTGAGCGGCACTGTATGTATTTTTTT-TAAACTGTATCAACAG---ACGGT----------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:00 PM